Citrus Sinensis ID: 044773
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | 2.2.26 [Sep-21-2011] | |||||||
| P37821 | 473 | 1-aminocyclopropane-1-car | N/A | no | 0.993 | 0.606 | 0.767 | 1e-129 | |
| Q9T065 | 469 | 1-aminocyclopropane-1-car | yes | no | 1.0 | 0.616 | 0.750 | 1e-129 | |
| Q00257 | 475 | 1-aminocyclopropane-1-car | N/A | no | 1.0 | 0.608 | 0.749 | 1e-126 | |
| Q9M2Y8 | 470 | 1-aminocyclopropane-1-car | no | no | 0.979 | 0.602 | 0.757 | 1e-124 | |
| Q42881 | 469 | 1-aminocyclopropane-1-car | N/A | no | 0.979 | 0.603 | 0.764 | 1e-123 | |
| Q37001 | 470 | 1-aminocyclopropane-1-car | no | no | 0.979 | 0.602 | 0.721 | 1e-121 | |
| Q43309 | 474 | 1-aminocyclopropane-1-car | no | no | 1.0 | 0.609 | 0.693 | 1e-115 | |
| Q9S9U6 | 460 | 1-aminocyclopropane-1-car | no | no | 0.937 | 0.589 | 0.639 | 1e-103 | |
| Q10DK7 | 487 | 1-aminocyclopropane-1-car | yes | no | 0.968 | 0.574 | 0.621 | 1e-100 | |
| A2XLL2 | 487 | 1-aminocyclopropane-1-car | N/A | no | 0.968 | 0.574 | 0.621 | 1e-100 |
| >sp|P37821|1A1C_MALDO 1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/292 (76%), Positives = 251/292 (85%), Gaps = 5/292 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV QS + +SRR+S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDRGPIPG 472
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Malus domestica (taxid: 3750) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q9T065|1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/289 (75%), Positives = 250/289 (86%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQK +LKVKGVL+TNPSNPLGTT +R ELN L++FI+ K IHLISDEIYSGTVF++
Sbjct: 181 AYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTN 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGF+S+ME+LKDR ENT+V++RVHIVYSLSKDLGLPGFRVG IYSNDD VV+AATKMSS
Sbjct: 241 PGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGL+SSQTQYLLSALLSDK F +NY+ EN+ RLK RH+KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLL SNTFEAE+ELWKKIVY+VKLNISPGSSCHC EPGWFRVCFAN+SE+TLK++
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+ RLK FVD + T +QS HQ +KN R+ + WVFRLSF D ER
Sbjct: 421 LDRLKRFVDGPSPTRRSQSEHQRLKNLRKMKVSNWVFRLSFHDREPEER 469
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00257|1A12_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/295 (74%), Positives = 252/295 (85%), Gaps = 6/295 (2%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQ R+L+VKGVLVTNPSNPLGTTM+R+ELNL+ +FIT K IHLISDEIYSGTVF S
Sbjct: 181 AYKDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVS ME+LK+R+ E+ EVW RVHIVYSLSKDLGLPGFRVGAIYSNDD VVAAATKMSS
Sbjct: 241 PGFVSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLSA+LSDKKF +YISEN+KRLKQR + LVSGL+KAGI+CL SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLL S+ FE+E+ELWKKIVY+V LNISPGSSCHCTEPGWFRVCFANMSE TLKL+
Sbjct: 361 WVDMRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKLA 420
Query: 241 MQRLKAFVDSI-TTTLHNQSNHQS--IKNSRRRSFTKWVFRLSFDDP---MTGER 289
++RLK+FV + +TT N NH + KN ++ FTKWVFR S + M ER
Sbjct: 421 VRRLKSFVTELRSTTTSNHRNHDNKICKNIKKNIFTKWVFRQSAQEANRKMQAER 475
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9M2Y8|1A19_ARATH 1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/284 (75%), Positives = 247/284 (86%), Gaps = 1/284 (0%)
Query: 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSI 66
K LKVKGVLVTNPSNPLGT ++R ELNLLV+FIT KNIHLISDEIYSGTVF FVS+
Sbjct: 187 KLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGFEQFVSV 246
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSS 126
M++LKD+N EN+EV RVHIVYSLSKDLGLPGFRVGAIYSND+ VV+AATKMSSFGLVSS
Sbjct: 247 MDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSS 306
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
QTQYLLSALLSDKKF Y+ EN+KRLK R +KLVSGLE AGI+CLKSNAGLFCWVDMRH
Sbjct: 307 QTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFCWVDMRH 366
Query: 187 LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246
LL +NTFEAE+ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTL L+M+RLK
Sbjct: 367 LLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMKRLKE 426
Query: 247 FVDSITT-TLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+V+S + + ++S+H IK+ R+R+ + WVFR+S+ D + ER
Sbjct: 427 YVESTDSRRVISKSSHDRIKSLRKRTVSNWVFRVSWTDRVPDER 470
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q42881|1A13_SOLLC 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/284 (76%), Positives = 249/284 (87%), Gaps = 1/284 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY A+KR+LKVKGVLVTNPSNPLGTT++RNEL LL+ FI EK IHLISDEIYSGTVF+S
Sbjct: 181 AYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVS+ME+L ++N T VW RVHIVYSLSKDLGLPGFR+GAIYSND+ VV+AATKMSS
Sbjct: 241 PGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLS +LSDKKF + YISEN+KRLK+RH LV GL+ AGI+CL+SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLLSSN F+AEM+LWKKIVYDV LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 241 MQRLKAFVDSITTTLHN-QSNHQSIKNSRRRSFTKWVFRLSFDD 283
M+R+K FV+S N Q+ QS NS+++SF+KWVFRLSF+D
Sbjct: 421 MRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLSFND 464
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q37001|1A15_ARATH 1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/284 (72%), Positives = 246/284 (86%), Gaps = 1/284 (0%)
Query: 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSI 66
K LKVKGVLVTNPSNPLGT ++R ELNLLV+FIT KNIHLISDEIYSGT+F F+S+
Sbjct: 187 KLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGFEQFISV 246
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSS 126
M++LKD+ E+TEV RVH+VYSLSKDLGLPGFRVGAIYSND+ +V+AATKMSSFGLVSS
Sbjct: 247 MDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSSFGLVSS 306
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
QTQYLLSALLSDKKF Y+ EN+KRLK R R+LVSGLE AGI+CL+SNAGLFCWVDMRH
Sbjct: 307 QTQYLLSALLSDKKFTSQYLEENQKRLKSRQRRLVSGLESAGITCLRSNAGLFCWVDMRH 366
Query: 187 LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246
LL +NTFEAE++LWKKIVY+VKLNISPGSSCHCTEPGWFRVCFANMSEDTL L+++RLK
Sbjct: 367 LLDTNTFEAELDLWKKIVYNVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLALKRLKT 426
Query: 247 FVDSITTT-LHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
FV+S + ++S+H+ +K+ R+++ + WVFR+S+ D + ER
Sbjct: 427 FVESTDCGRMISRSSHERLKSLRKKTVSNWVFRVSWTDRVPDER 470
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q43309|1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/294 (69%), Positives = 240/294 (81%), Gaps = 5/294 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFS 59
AY+ A+K L VKG+L+TNPSNPLGTT ++ ELN+L +FIT+ KNIHL+SDEIYSGTVF+
Sbjct: 181 AYEQAKKLDLNVKGILITNPSNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFN 240
Query: 60 SPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
S F+S+MEILK+ ENT+V NRVHIV SLSKDLGLPGFRVGAIYSND V++AATKMS
Sbjct: 241 SSEFISVMEILKNNQLENTDVLNRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQYLLS+LLSDKKF +NY+ EN+KRLK R RKLV GLE GI CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSSLLSDKKFTKNYLRENQKRLKNRQRKLVLGLEAIGIKCLKSNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMR LL S TFEAEM+LWKKIVY+VKLNISPGSSCHC EPGWFRVCFANM ++TLKL
Sbjct: 361 CWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPGSSCHCEEPGWFRVCFANMIDETLKL 420
Query: 240 SMQRLKAFVDSITTTLHNQ-SNHQSIKNSRRRSF---TKWVFRLSFDDPMTGER 289
+++RLK VD ++ Q S + + SR+++ + WVFRLSF D ER
Sbjct: 421 ALKRLKMLVDDENSSRRCQKSKSERLNGSRKKTMSNVSNWVFRLSFHDREAEER 474
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9S9U6|1A111_ARATH 1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/283 (63%), Positives = 227/283 (80%), Gaps = 12/283 (4%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ A K +L VKGVL+TNPSNPLGT+ +R EL+LL+ F + K IH++SDEIYSGTVF S
Sbjct: 179 AYERALKHNLNVKGVLITNPSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDS 238
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P F S++E+ KD+N + ++H+VYSLSKDLGLPGFRVG IYSN++ VV+AATKMSS
Sbjct: 239 PEFTSVLEVAKDKN---MGLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMSS 295
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGL+SSQTQ+LL+ LLSD++F NY+ ENKKRL++R +LVSGL++AGISCLKSNAGLFC
Sbjct: 296 FGLISSQTQHLLANLLSDERFTTNYLEENKKRLRERKDRLVSGLKEAGISCLKSNAGLFC 355
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVD+RHLL SNTFEAE LW KIV +V LNISPGSSCHC EPGWFRVCFANMS+ T++++
Sbjct: 356 WVDLRHLLKSNTFEAEHSLWTKIVCEVGLNISPGSSCHCDEPGWFRVCFANMSDQTMEVA 415
Query: 241 MQRLKAFVDSITTTLHNQSNHQ--SIKNSRRRSF-TKWVFRLS 280
M R+K FVD +N Q ++ ++RRRS KWV +LS
Sbjct: 416 MDRVKGFVD------NNNGGKQKRTMWDTRRRSLINKWVSKLS 452
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q10DK7|1A11_ORYSJ 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/285 (62%), Positives = 219/285 (76%), Gaps = 5/285 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQKR L+VKGVL+TNPSNPLGT R +L +V+F+ K IHLISDEIY+GT F+
Sbjct: 193 AYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAE 252
Query: 61 P--GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM 118
P GFVS +E++ R+ +V +RVH+VYSLSKDLGLPGFRVGAIYS + VV+AATKM
Sbjct: 253 PPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKM 312
Query: 119 SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 178
SSFGLVSSQTQYLL+ALL D+ F ++Y++ENK+R+K+RH +LV GL + GI CL SNAGL
Sbjct: 313 SSFGLVSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGL 372
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238
FCWVDM HL+ S +F EMELWKK+V++V LNISPGSSCHC EPGWFRVCFANMS TL
Sbjct: 373 FCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTLD 432
Query: 239 LSMQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFT---KWVFRLS 280
++MQRL++FVDS T N + ++ R S KW RL+
Sbjct: 433 VAMQRLRSFVDSATGGGDNAALRRAAVPVRSVSCPLAIKWALRLT 477
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|A2XLL2|1A11_ORYSI 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/285 (62%), Positives = 219/285 (76%), Gaps = 5/285 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQKR L+VKGVL+TNPSNPLGT R +L +V+F+ K IHLISDEIY+GT F+
Sbjct: 193 AYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAE 252
Query: 61 P--GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM 118
P GFVS +E++ R+ +V +RVH+VYSLSKDLGLPGFRVGAIYS + VV+AATKM
Sbjct: 253 PPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKM 312
Query: 119 SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 178
SSFGLVSSQTQYLL+ALL D+ F ++Y++ENK+R+K+RH +LV GL + GI CL SNAGL
Sbjct: 313 SSFGLVSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGL 372
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238
FCWVDM HL+ S +F EMELWKK+V++V LNISPGSSCHC EPGWFRVCFANMS TL
Sbjct: 373 FCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTLD 432
Query: 239 LSMQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFT---KWVFRLS 280
++MQRL++FVDS T N + ++ R S KW RL+
Sbjct: 433 VAMQRLRSFVDSATGGGDNAALRRAAVPVRSVSCPLAIKWALRLT 477
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Oryza sativa subsp. indica (taxid: 39946) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | ||||||
| 225467508 | 469 | PREDICTED: 1-aminocyclopropane-1-carboxy | 1.0 | 0.616 | 0.840 | 1e-142 | |
| 359497594 | 469 | PREDICTED: 1-aminocyclopropane-1-carboxy | 1.0 | 0.616 | 0.837 | 1e-141 | |
| 255579517 | 466 | acc synthase, putative [Ricinus communis | 0.975 | 0.605 | 0.837 | 1e-138 | |
| 224097212 | 467 | 1-aminocyclopropane-1-carboxylate [Popul | 0.961 | 0.595 | 0.826 | 1e-136 | |
| 224127212 | 468 | 1-aminocyclopropane-1-carboxylate [Popul | 0.968 | 0.598 | 0.804 | 1e-134 | |
| 157921976 | 470 | 1-aminocyclopropane 1-carboxylate syntha | 0.975 | 0.6 | 0.778 | 1e-131 | |
| 20152191 | 471 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.613 | 0.790 | 1e-131 | |
| 3273184 | 467 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.614 | 0.771 | 1e-128 | |
| 4001618 | 473 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.606 | 0.767 | 1e-128 | |
| 74325222 | 473 | ACC synthase [Malus x domestica] | 0.993 | 0.606 | 0.767 | 1e-128 |
| >gi|225467508|ref|XP_002269780.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3 [Vitis vinifera] gi|147801368|emb|CAN74730.1| hypothetical protein VITISV_037836 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/289 (84%), Positives = 261/289 (90%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVNFIT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVSIME+L DRN NTEVW RVHIVYSLSKDLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLS +LSDKKF +NY+SEN+KRLKQRH+ L+SGL+ AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLLSSNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+QR+KAFVDS TTT +NQS HQS KN RR+SFTKWVFRLSF D ER
Sbjct: 421 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497594|ref|XP_003635576.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/289 (83%), Positives = 260/289 (89%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVNFIT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVSIME+L DRN NTEVW RVHIVYSLSKDLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLS +LSDKKF +NY+SEN+KRLKQRH+ L+SGL+ GI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNTGIDCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLLSSNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+QR+KAFVDS TTT +NQS HQS KN RR+SFTKWVFRLSF D ER
Sbjct: 421 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579517|ref|XP_002530601.1| acc synthase, putative [Ricinus communis] gi|223529849|gb|EEF31781.1| acc synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/283 (83%), Positives = 260/283 (91%), Gaps = 1/283 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY AQ R+LKVKGVLVTNPSNPLGT M+R ELNLLVNFI++K+IHLI DEIYSGTVFSS
Sbjct: 176 AYLEAQNRNLKVKGVLVTNPSNPLGTAMTRTELNLLVNFISDKSIHLICDEIYSGTVFSS 235
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVSIME+LKDR CENTE+ NRVHIVYSLSKDLGLPGFRVGAIYSNDD VV+AATKMSS
Sbjct: 236 PGFVSIMEVLKDRKCENTEISNRVHIVYSLSKDLGLPGFRVGAIYSNDDLVVSAATKMSS 295
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVS+QTQ+LLSALLSDKKF ++YISEN+KRLKQR + L+ GLEKAGISCLKSNAGLFC
Sbjct: 296 FGLVSAQTQHLLSALLSDKKFTKHYISENQKRLKQRQKMLIKGLEKAGISCLKSNAGLFC 355
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WV+M+HLL SNTFEAEMELWK IVYDVKLNISPGSSCHCTEPGWFR+CFANMSEDTL L+
Sbjct: 356 WVNMKHLLKSNTFEAEMELWKTIVYDVKLNISPGSSCHCTEPGWFRICFANMSEDTLNLA 415
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDD 283
M RLK+FVDSI T NQS+HQ +KNSRRRS TKWVFRLSFD+
Sbjct: 416 MNRLKSFVDSINNT-QNQSSHQMLKNSRRRSLTKWVFRLSFDN 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097212|ref|XP_002310878.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222853781|gb|EEE91328.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/282 (82%), Positives = 262/282 (92%), Gaps = 4/282 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
A+Q AQKR+L+VKGVLVTNPSNPLGTTM+ NELNLL++F+TEK IHLISDEIYSGTVFSS
Sbjct: 181 AFQEAQKRNLRVKGVLVTNPSNPLGTTMTGNELNLLLSFVTEKGIHLISDEIYSGTVFSS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVSI+E+LKDR CEN++VWNRVHIVYSLSKDLGLPGFRVGAIYSNDD VV+AATKMSS
Sbjct: 241 PGFVSILEVLKDRKCENSQVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLSALLSDKKF +NYISEN+KRLKQR + LV GLEKAGISCLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTRNYISENQKRLKQRQKLLVKGLEKAGISCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WV+M+HLLSSNTF EMELWKKIV++VKLNISPGSSCHCTEPGWFRVCFANMSE+TL L+
Sbjct: 361 WVNMKHLLSSNTFTEEMELWKKIVHEVKLNISPGSSCHCTEPGWFRVCFANMSEETLNLA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFD 282
+QRLK+FV+S + NQS+HQ +K+SRR+ TKWVFRLSFD
Sbjct: 421 IQRLKSFVES----MKNQSHHQMLKSSRRKFLTKWVFRLSFD 458
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127212|ref|XP_002320015.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222860788|gb|EEE98330.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/282 (80%), Positives = 263/282 (93%), Gaps = 2/282 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
A+Q AQKR+L+VKGVLVTNPSNPLGTT++R+ELNLL++ ITEK IHLISDEIYSGTVF+S
Sbjct: 181 AFQEAQKRNLRVKGVLVTNPSNPLGTTITRSELNLLLSLITEKGIHLISDEIYSGTVFNS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVS+ME+LKD CE+++VWNRVH+VYSLSKDLGLPGFRVGAIYSNDD VV+AATKMSS
Sbjct: 241 PGFVSVMEVLKDMKCESSQVWNRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLL+ALLSDKKF +NYISEN+KRLKQR + LV GLEKAGISCLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLAALLSDKKFTRNYISENQKRLKQRQKLLVKGLEKAGISCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WV+M+HLLSSNTF+AEMELWKKIV+ VKLNISPGSSCHCTEPGWFRVCFANMSE+TL L+
Sbjct: 361 WVNMKHLLSSNTFDAEMELWKKIVHQVKLNISPGSSCHCTEPGWFRVCFANMSEETLNLA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFD 282
+QRLK+FV+S+ ++NQS+HQ +KN+RR+S KWV RLSFD
Sbjct: 421 IQRLKSFVESM--NINNQSHHQLLKNARRKSLAKWVLRLSFD 460
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157921976|gb|ABW03081.1| 1-aminocyclopropane 1-carboxylate synthase 1 [Prunus salicina] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/294 (77%), Positives = 257/294 (87%), Gaps = 12/294 (4%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQKR+L+VKGVLVTNPSNPLGTTM+R+ELNLL++F+ +K IHLISDEIYSGTVFSS
Sbjct: 181 AYQAAQKRNLRVKGVLVTNPSNPLGTTMTRSELNLLLSFVEDKGIHLISDEIYSGTVFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F S+ME+LK+R C EN+ +WNRVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFTSVMEVLKERKCDENSPMWNRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGL+SSQTQYLLSA+LSDKK +NYISEN+KRLKQR ++LVSGL+KAGISCLK NAGLF
Sbjct: 301 SFGLISSQTQYLLSAMLSDKKLTKNYISENQKRLKQRQKRLVSGLQKAGISCLKGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V+LNISPGSSCHCTEPGWFRVCFAN+SE TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVRLNISPGSSCHCTEPGWFRVCFANLSEKTLDL 420
Query: 240 SMQRLKAFVDSI----TTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDD--PMTG 287
+M RLKAFV T +Q+NH SRRRS TKWVFRLSFDD P+ G
Sbjct: 421 AMHRLKAFVGEYFNVPDTNGRSQTNH-----SRRRSLTKWVFRLSFDDRSPVPG 469
|
Source: Prunus salicina Species: Prunus salicina Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20152191|dbj|BAB89348.1| 1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/291 (79%), Positives = 251/291 (86%), Gaps = 2/291 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A KR+LKVKGVLVTNPSNPLGTT+SR+ELNLL++F+TEK IHLISDEIYSGTVFSS
Sbjct: 181 AYQAAGKRNLKVKGVLVTNPSNPLGTTLSRHELNLLLSFVTEKGIHLISDEIYSGTVFSS 240
Query: 61 PGFVSIMEILKDRNCE-NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
PGF+S+MEIL D+ NTEVW RVHIVYSLSKDLGLPGFRVGAIYSNDD VV AATKMS
Sbjct: 241 PGFLSVMEILMDKKYSMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVEAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQYLLSA+LSDKKF +NYISEN+KRL+ R L+SGLE AGI CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFRKNYISENQKRLRHRQEMLISGLESAGIRCLKSNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLLSS TF+AEMELWKKIVYDV LNISPGSSCHC EPGWFRVCFANMS TL L
Sbjct: 361 CWVDMRHLLSSETFDAEMELWKKIVYDVGLNISPGSSCHCDEPGWFRVCFANMSAATLNL 420
Query: 240 SMQRLKAFVDSITT-TLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
++QR+K FV S + NQS HQS+ NSRR+S TKWVFRLSFD ER
Sbjct: 421 AIQRIKLFVQSTAAGSKQNQSYHQSLNNSRRKSLTKWVFRLSFDGREPDER 471
|
Source: Diospyros kaki Species: Diospyros kaki Genus: Diospyros Family: Ebenaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3273184|dbj|BAA31137.1| 1-aminocyclopropane-1-carboxylate synthase [Actinidia deliciosa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/289 (77%), Positives = 253/289 (87%), Gaps = 2/289 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQKR+L+VKGVLVTNPSNPLGTT++R ELNLL+ FIT KNIHLISDEIYSGTVFSS
Sbjct: 181 AYQSAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P FVSIME+LKD + +TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD VVAAATKMSS
Sbjct: 241 PDFVSIMEVLKD-SSHSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMSS 299
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLL+++LSDK F ++YISEN+KRLK+R L+SGL+ AGI CLKSNAGLFC
Sbjct: 300 FGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLFC 359
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLLSS +F++EMELWKKIVY V LNISPGSSCHC+EPGWFRVCFANMSEDTL ++
Sbjct: 360 WVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDIA 419
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+QR+K FV + T H+Q H S+K S+R+S TKWVFRLSFD ER
Sbjct: 420 IQRIKTFVQT-TNNNHSQRIHPSVKKSKRKSLTKWVFRLSFDGREPDER 467
|
Source: Actinidia deliciosa Species: Actinidia deliciosa Genus: Actinidia Family: Actinidiaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4001618|dbj|BAA35057.1| 1-aminocyclopropane-1-carboxylate synthase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/292 (76%), Positives = 251/292 (85%), Gaps = 5/292 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV QS + +SRR+S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDRSPIPG 472
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74325222|gb|ABA03056.1| ACC synthase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/292 (76%), Positives = 251/292 (85%), Gaps = 5/292 (1%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV QS + +SRR+S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDRGPIPG 472
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | ||||||
| UNIPROTKB|A5BL65 | 469 | VITISV_037836 "Putative unchar | 1.0 | 0.616 | 0.840 | 1.2e-129 | |
| UNIPROTKB|Q8S935 | 471 | DK-ACS1 "1-aminocyclopropane-1 | 1.0 | 0.613 | 0.790 | 5.2e-120 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 0.993 | 0.614 | 0.771 | 3.3e-118 | |
| UNIPROTKB|P37821 | 473 | ACS-1 "1-aminocyclopropane-1-c | 0.993 | 0.606 | 0.767 | 2.3e-117 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 1.0 | 0.616 | 0.750 | 3.8e-117 | |
| UNIPROTKB|A1IIT7 | 473 | PbACS1B "1-aminocyclopropane-1 | 0.993 | 0.606 | 0.753 | 1.9e-115 | |
| UNIPROTKB|Q9SXN8 | 473 | pPPACS1 "1-aminocyclopropane-1 | 0.993 | 0.606 | 0.756 | 1.9e-115 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 1.0 | 0.614 | 0.758 | 1.9e-115 | |
| UNIPROTKB|Q6TRG0 | 474 | ACS1b "1-aminocyclopropane-1-c | 0.979 | 0.597 | 0.763 | 3.1e-115 | |
| UNIPROTKB|Q00257 | 475 | ACS2 "1-aminocyclopropane-1-ca | 0.968 | 0.589 | 0.770 | 1.7e-114 |
| UNIPROTKB|A5BL65 VITISV_037836 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 243/289 (84%), Positives = 261/289 (90%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQKR LKVKGVL+TNPSNPLGTT SR+ELNLLVNFIT K IHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVSIME+L DRN NTEVW RVHIVYSLSKDLGLPGFRVGAIYSND VV+AATKMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLS +LSDKKF +NY+SEN+KRLKQRH+ L+SGL+ AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLLSSNTFEAEMELWKKI+YDV+LNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+QR+KAFVDS TTT +NQS HQS KN RR+SFTKWVFRLSF D ER
Sbjct: 421 LQRIKAFVDSSTTTNNNQSRHQSNKNQRRKSFTKWVFRLSFRDREASER 469
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| UNIPROTKB|Q8S935 DK-ACS1 "1-aminocyclopropane-1-carboxylate synthase" [Diospyros kaki (taxid:35925)] | Back alignment and assigned GO terms |
|---|
Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
Identities = 230/291 (79%), Positives = 251/291 (86%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A KR+LKVKGVLVTNPSNPLGTT+SR+ELNLL++F+TEK IHLISDEIYSGTVFSS
Sbjct: 181 AYQAAGKRNLKVKGVLVTNPSNPLGTTLSRHELNLLLSFVTEKGIHLISDEIYSGTVFSS 240
Query: 61 PGFVSIMEILKDRNCE-NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
PGF+S+MEIL D+ NTEVW RVHIVYSLSKDLGLPGFRVGAIYSNDD VV AATKMS
Sbjct: 241 PGFLSVMEILMDKKYSMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVEAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQYLLSA+LSDKKF +NYISEN+KRL+ R L+SGLE AGI CLKSNAGLF
Sbjct: 301 SFGLVSSQTQYLLSAMLSDKKFRKNYISENQKRLRHRQEMLISGLESAGIRCLKSNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLLSS TF+AEMELWKKIVYDV LNISPGSSCHC EPGWFRVCFANMS TL L
Sbjct: 361 CWVDMRHLLSSETFDAEMELWKKIVYDVGLNISPGSSCHCDEPGWFRVCFANMSAATLNL 420
Query: 240 SMQRLKAFVDSITT-TLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
++QR+K FV S + NQS HQS+ NSRR+S TKWVFRLSFD ER
Sbjct: 421 AIQRIKLFVQSTAAGSKQNQSYHQSLNNSRRKSLTKWVFRLSFDGREPDER 471
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| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 223/289 (77%), Positives = 253/289 (87%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQKR+L+VKGVLVTNPSNPLGTT++R ELNLL+ FIT KNIHLISDEIYSGTVFSS
Sbjct: 181 AYQSAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P FVSIME+LKD + +TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD VVAAATKMSS
Sbjct: 241 PDFVSIMEVLKDSS-HSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMSS 299
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLL+++LSDK F ++YISEN+KRLK+R L+SGL+ AGI CLKSNAGLFC
Sbjct: 300 FGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLFC 359
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLLSS +F++EMELWKKIVY V LNISPGSSCHC+EPGWFRVCFANMSEDTL ++
Sbjct: 360 WVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDIA 419
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+QR+K FV + T H+Q H S+K S+R+S TKWVFRLSFD ER
Sbjct: 420 IQRIKTFVQT-TNNNHSQRIHPSVKKSKRKSLTKWVFRLSFDGREPDER 467
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| UNIPROTKB|P37821 ACS-1 "1-aminocyclopropane-1-carboxylate synthase" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
Identities = 224/292 (76%), Positives = 251/292 (85%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTTLHNQSNHQS--IKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV QS + +SRR+S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGGSQSSHLSHSRRQSLTKWVSRLSFDDRGPIPG 472
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| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 217/289 (75%), Positives = 250/289 (86%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQK +LKVKGVL+TNPSNPLGTT +R ELN L++FI+ K IHLISDEIYSGTVF++
Sbjct: 181 AYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTN 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGF+S+ME+LKDR ENT+V++RVHIVYSLSKDLGLPGFRVG IYSNDD VV+AATKMSS
Sbjct: 241 PGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGL+SSQTQYLLSALLSDK F +NY+ EN+ RLK RH+KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLL SNTFEAE+ELWKKIVY+VKLNISPGSSCHC EPGWFRVCFAN+SE+TLK++
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
+ RLK FVD + T +QS HQ +KN R+ + WVFRLSF D ER
Sbjct: 421 LDRLKRFVDGPSPTRRSQSEHQRLKNLRKMKVSNWVFRLSFHDREPEER 469
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| UNIPROTKB|A1IIT7 PbACS1B "1-aminocyclopropane-1-carboxylate synthase" [Pyrus x bretschneideri (taxid:225117)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 220/292 (75%), Positives = 250/292 (85%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VK VLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKSVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR + LVSGL+KAGISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL S+TFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSSTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTT--LHNQSNHQSIKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV ++ +S + +SR +S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGRSQSSHLSHSRGQSLTKWVSRLSFDDRCPIHG 472
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| UNIPROTKB|Q9SXN8 pPPACS1 "1-aminocyclopropane-1-carboxylic acid synthase" [Pyrus pyrifolia (taxid:3767)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 221/292 (75%), Positives = 249/292 (85%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+K +L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKCNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENFEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR + LVSGL+KAGISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTT--LHNQSNHQSIKNSRRRSFTKWVFRLSFDD--PMTG 287
+MQRLKAFV ++ +S + +SR +S TKWV RLSFDD P+ G
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGRSQSSHLSHSRGQSLTKWVSRLSFDDRCPIHG 472
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| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 220/290 (75%), Positives = 252/290 (86%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQK LKVKGVLVTNPSNPLGT ++R ELNLLV+FIT KNIHLISDEIYSGTVF
Sbjct: 181 AYQQAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGF 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
FVS+M++LKD+N EN+EV RVHIVYSLSKDLGLPGFRVGAIYSND+ VV+AATKMSS
Sbjct: 241 EQFVSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLSALLSDKKF Y+ EN+KRLK R +KLVSGLE AGI+CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLL +NTFEAE+ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTL L+
Sbjct: 361 WVDMRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLA 420
Query: 241 MQRLKAFVDSITTT-LHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMTGER 289
M+RLK +V+S + + ++S+H IK+ R+R+ + WVFR+S+ D + ER
Sbjct: 421 MKRLKEYVESTDSRRVISKSSHDRIKSLRKRTVSNWVFRVSWTDRVPDER 470
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| UNIPROTKB|Q6TRG0 ACS1b "1-aminocyclopropane-1-carboxylate synthase 1b" [Pyrus communis (taxid:23211)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 219/287 (76%), Positives = 248/287 (86%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNCE-NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC+ N+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDKNSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR + LVSGL+KAGISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDSITTT--LHNQSNHQSIKNSRRRSFT-KWVFRLSFDD 283
+MQRLKAFV ++ +S + +SR +S T KWV RLSFDD
Sbjct: 421 AMQRLKAFVGEYYNVPEVNGRSQSSHLSHSRGQSLTRKWVSRLSFDD 467
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| UNIPROTKB|Q00257 ACS2 "1-aminocyclopropane-1-carboxylate synthase CMA101" [Cucurbita maxima (taxid:3661)] | Back alignment and assigned GO terms |
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Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
Identities = 218/283 (77%), Positives = 248/283 (87%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQ R+L+VKGVLVTNPSNPLGTTM+R+ELNL+ +FIT K IHLISDEIYSGTVF S
Sbjct: 181 AYKDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVS ME+LK+R+ E+ EVW RVHIVYSLSKDLGLPGFRVGAIYSNDD VVAAATKMSS
Sbjct: 241 PGFVSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLSA+LSDKKF +YISEN+KRLKQR + LVSGL+KAGI+CL SNAGLFC
Sbjct: 301 FGLVSSQTQYLLSAMLSDKKFTISYISENQKRLKQRQKMLVSGLQKAGINCLDSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLL S+ FE+E+ELWKKIVY+V LNISPGSSCHCTEPGWFRVCFANMSE TLKL+
Sbjct: 361 WVDMRHLLESDKFESELELWKKIVYEVGLNISPGSSCHCTEPGWFRVCFANMSESTLKLA 420
Query: 241 MQRLKAFVDSI-TTTLHNQSNHQS--IKNSRRRSFTKWVFRLS 280
++RLK+FV + +TT N NH + KN ++ FTKWVFR S
Sbjct: 421 VRRLKSFVTELRSTTTSNHRNHDNKICKNIKKNIFTKWVFRQS 463
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q00257 | 1A12_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.7491 | 1.0 | 0.6084 | N/A | no |
| Q42881 | 1A13_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.7640 | 0.9792 | 0.6034 | N/A | no |
| P37821 | 1A1C_MALDO | 4, ., 4, ., 1, ., 1, 4 | 0.7671 | 0.9930 | 0.6067 | N/A | no |
| Q9T065 | 1A18_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.7508 | 1.0 | 0.6162 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.4.1.14 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | ACS1 | SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_1179, whole genome shotgun sequence); (469 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | pVvSPMS | SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (369 aa) | • | • | 0.916 | ||||||
 | grip58 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (265 aa) | • | • | 0.907 | ||||||
 | SAMDC | SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (360 aa) | • | 0.899 | |||||||
 | GSVIVG00032257001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (336 aa) | • | 0.899 | |||||||
 | GSVIVG00028846001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (297 aa) | • | 0.899 | |||||||
 | METK5 | RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa) | • | 0.899 | |||||||
 | GSVIVG00025952001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (318 aa) | • | 0.899 | |||||||
 | GSVIVG00025412001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (816 aa) | • | 0.899 | |||||||
 | GSVIVG00024734001 | RecName- Full=Cytosine-specific methyltransferase; EC=2.1.1.37; (926 aa) | • | 0.899 | |||||||
 | METK4 | RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 289 | |||
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 1e-129 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 1e-102 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-71 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-45 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 3e-41 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 3e-27 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 5e-19 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 1e-18 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 8e-17 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 5e-16 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 6e-16 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 1e-15 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 8e-14 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 9e-14 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-13 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 2e-13 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 6e-13 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 8e-13 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 1e-12 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 5e-12 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 8e-12 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 1e-11 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 3e-11 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 1e-10 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 1e-10 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 3e-10 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 4e-10 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 4e-10 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 6e-10 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 6e-10 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 9e-10 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 2e-09 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 2e-09 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 2e-09 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-09 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 3e-09 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 9e-09 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 1e-08 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 1e-08 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 2e-08 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 4e-08 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 6e-08 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 8e-08 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 1e-07 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-07 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 2e-07 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 2e-07 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-07 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 8e-07 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 9e-07 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 1e-06 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 1e-06 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 2e-06 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 2e-06 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 2e-06 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 2e-06 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 1e-05 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 2e-05 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 2e-05 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 5e-05 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 6e-05 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 6e-05 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 1e-04 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 2e-04 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 2e-04 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 2e-04 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 3e-04 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 0.001 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 0.002 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 0.002 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 0.003 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 0.003 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 0.003 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 590 bits (1524), Expect = 0.0
Identities = 231/283 (81%), Positives = 257/283 (90%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ AQK +LKVKGVL+TNPSNPLGTT +R ELNLLV+FIT KNIHLISDEIYSGTVF S
Sbjct: 181 AYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
PGFVS+ME+LKDR ENT+V NRVHIVYSLSKDLGLPGFRVGAIYSND+ VV+AATKMSS
Sbjct: 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQYLLSALLSDKKF +NY+ EN+KRLKQR +KLVSGLE AGI CLKSNAGLFC
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFC 360
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
WVDMRHLL SNTFEAEMELWKKIVY+VKLNISPGSSCHCTEPGWFRVCFANMSE+TL L+
Sbjct: 361 WVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLA 420
Query: 241 MQRLKAFVDSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDD 283
M+RLK+FV+S + N+S+HQ +KN RR++ +KWVFRLSF D
Sbjct: 421 MKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSFHD 463
|
Length = 468 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 374 bits (963), Expect = e-129
Identities = 150/249 (60%), Positives = 199/249 (79%), Gaps = 2/249 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+ +++V+GVL+TNPSNPLG T+ R+ L +++F+ KNIHL+SDEIYSG+VFS+
Sbjct: 190 AYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA 249
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
FVS+ EI++ R V RVHIVYSLSKDLGLPGFRVG IYS +D VV A +MSS
Sbjct: 250 SEFVSVAEIVEARG--YKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS 307
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
F LVSSQTQ+LL+++LSD++F +NYI N++RL++R+ +V GL +AGI CLK NAGLFC
Sbjct: 308 FTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFC 367
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
W+++ LL + T E E+ LW I+ +VKLNISPGSSCHC+EPGWFRVCFANMSEDTL+++
Sbjct: 368 WMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVA 427
Query: 241 MQRLKAFVD 249
++R+ F+D
Sbjct: 428 LKRIHRFMD 436
|
Length = 447 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 308 bits (789), Expect = e-102
Identities = 149/286 (52%), Positives = 210/286 (73%), Gaps = 6/286 (2%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQ+ + KVKG+++TNPSNPLGT + ++ L LV F+T KNIHL+ DEIY+ TVF+
Sbjct: 189 AYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG 248
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
FVS+ E++ D + V + +HIVYSLSKD+GLPGFRVG +YS +D+VV+ A KMSS
Sbjct: 249 GDFVSVAEVVNDVDISEVNV-DLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSS 307
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVSSQTQ +L+++LSD +F N++ E+ +RL RH+ +G++KA I+CL SNAGLF
Sbjct: 308 FGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFA 367
Query: 181 WVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
W+D+RHLL N+FE+E+ELW I+ VKLN+SPGSS CTEPGWFR+CFANM +DTL +
Sbjct: 368 WMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHV 427
Query: 240 SMQRLKAFVDSITTTLHNQS--NHQSIKN--SRRRSFTKWVFRLSF 281
++ R++ FV + ++ N Q I+N +++ + + RLSF
Sbjct: 428 ALGRIQDFVSKNKNKIVEKASENDQVIQNKNAKKLKWRQSNLRLSF 473
|
Length = 496 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 3e-71
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 18/238 (7%)
Query: 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSI 66
+ K VL T+P NP GT + EL L++ E NI L+ DE Y+G VF S V+
Sbjct: 138 EATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVAT 197
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSS 126
+L + + +V S SK GL G+RVG I N V++ K++ S+
Sbjct: 198 RALLAE------GPN--LLVVGSFSKAFGLAGWRVGYILGNAA-VISQLRKLARPFYSST 248
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
Q +A LSD + + E ++R+K+R L GLE AG+S L S AG F +
Sbjct: 249 HLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDP 308
Query: 187 LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244
EA + L + ++ +V + ++PGSS PGW R+ A +E+ L+ ++ +
Sbjct: 309 -------EAALALAQVLLEEVGVYVTPGSSFGG--PGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-45
Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K + + NP+NP G +S EL L + I +ISDE Y+ V+ + +L
Sbjct: 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGE-PPPALALL 190
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQT 128
+ RV ++ S SK GLPG R+G + + + ++ K+ + S+ +
Sbjct: 191 DA--------YERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLS 242
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHL 187
Q +A L D + ++ E ++R ++R L+ L++ G + +K + G F W+D+
Sbjct: 243 QAAAAAALDD---GEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG 299
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246
E ++++ + + + PGS+ G+ R+ FA E+ L+ +++RL
Sbjct: 300 DDE-------EFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFAT-PEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-41
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 23/246 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +++ +P+NP G S+ EL +V E +I +ISDEIY V+ SI+E+
Sbjct: 163 KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELA 222
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQ 127
R +R + S SK G+ G+R+G + + ++AA K + +
Sbjct: 223 GAR--------DRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC-APTP 273
Query: 128 TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL-EKAGISCLKS-NAGLFCWVDMR 185
QY A L+ + + + E ++ ++R LV L E G+S +K + + +
Sbjct: 274 AQYAAIAALNGPQ-SDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIP 332
Query: 186 HLLSSNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDTLKLSMQRL 244
LL S F A+ +L ++ V + PGS G+ R+ A SE+TL+ +++RL
Sbjct: 333 ELLDSEEF-AK-KLLEE--AGVAV--VPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRL 385
Query: 245 KAFVDS 250
F+
Sbjct: 386 ARFLAE 391
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-27
Identities = 62/254 (24%), Positives = 121/254 (47%), Gaps = 20/254 (7%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
QL K K +++ +PSNP G S EL + + E +I ++SDEIY V+
Sbjct: 156 QLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAE 215
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-- 120
F SI + + E+ +R V SK + G+R+G + ++ A +K+ S
Sbjct: 216 FTSIASL-------SPELRDRTITVNGFSKAYAMTGWRLGYAAGPKE-LIKAMSKLQSHS 267
Query: 121 FGLVSSQTQYL-LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGL 178
+S QY ++AL Q+ + E ++ ++R +V GL + G+ C K
Sbjct: 268 TSNPTSIAQYAAVAALNGP----QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAF 323
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238
+ + ++ LL + +E + ++ + + + PG + PG+ R+ +A S + L+
Sbjct: 324 YVFPNVSKLL-GKSITDSLEFAEALLEEAGVAVVPGIA--FGAPGYVRLSYAT-SLEDLE 379
Query: 239 LSMQRLKAFVDSIT 252
++R++ F++S+
Sbjct: 380 EGLERIERFLESLK 393
|
Length = 393 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 5e-19
Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 23/241 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K + V++ PSNP G T+S+ EL + + + +KNI ++SDEIYS V+ P SI
Sbjct: 161 KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFP 219
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQT 128
+ R E T V N LSK + G+R+G +++ + K+ + + SS +
Sbjct: 220 EMR--EKTIVIN------GLSKSHSMTGWRIGFLFAPSY-LAKHILKVHQYNVTCASSIS 270
Query: 129 QY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
QY L AL + K A+ + KKR + +L+S G+ K + + + H
Sbjct: 271 QYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS----MGLDVEKPTGAFYLFPSIGH- 325
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247
+ ++F+ ++L ++ L + PGS+ G+ R+ +A S +TLK + RL+AF
Sbjct: 326 FTMSSFDFALDLVEE----AGLAVVPGSAFSEYGEGYVRLSYA-YSIETLKEGLDRLEAF 380
Query: 248 V 248
+
Sbjct: 381 L 381
|
Length = 387 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-18
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +L++NP NP G ++ EL +L + ++ LISDE+Y V+ + S + +
Sbjct: 162 KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSL- 220
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-VSSQTQ 129
+ +RV I+ S+SK G R+G + S + ++AAA K+ L + Q
Sbjct: 221 -------EGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQ 273
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166
+ALL ++Y E ++ K+R L L K
Sbjct: 274 IGAAALL---DTPESYFDEVREEYKKRRDILYEELNK 307
|
Length = 397 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 8e-17
Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 37/250 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K+K V++ P+NP G T SR ++ L + + + +I +ISDE+YS ++ VSI E L
Sbjct: 166 KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL 225
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV----------VAAATKMSS 120
D + ++ LSK + G+R+G I++ + V AAT M+
Sbjct: 226 PD----------QTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQ 275
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
F V AL + K A KK +R ++ + G +K + +
Sbjct: 276 FAAV--------EALTNGKDDALPM----KKEYIKRRDYIIEKMTDLGFKIIKPDGAFYI 323
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
+ + + ++F+ + +K + PG++ G+ R+ +A S +T+K +
Sbjct: 324 FAKIPAGYNQDSFKFLQDFARK----KAVAFIPGAAFGPYGEGYVRLSYA-ASMETIKEA 378
Query: 241 MQRLKAFVDS 250
M+RLK +++
Sbjct: 379 MKRLKEYMEE 388
|
Length = 391 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 5e-16
Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 28/247 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K +++TNPSNP G+ SR + ++ E + LISDEIY+G VF+ F S+ +
Sbjct: 177 RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADF- 235
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDTVVAAATK------MSSFGL 123
+T V RV I+ +K+L +PG+R+G + + M G
Sbjct: 236 ------DTTV-PRV-ILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGP 287
Query: 124 VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCW- 181
S L ALL Q ++ + +L++ L + + + G+S +F
Sbjct: 288 CSVVQAALGEALL---NTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMS 344
Query: 182 -VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
+D+ + ++E ++K++ + + + PG H PG+ R+ + E L+ +
Sbjct: 345 RLDLEKFRDIKS---DVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISRPVE-VLREA 398
Query: 241 MQRLKAF 247
++R+KAF
Sbjct: 399 VERIKAF 405
|
Length = 412 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 6e-16
Identities = 67/255 (26%), Positives = 103/255 (40%), Gaps = 50/255 (19%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN------IHLISDEIYSGTVFSSPGFV 64
K K V++ +P+NP G S L L + EK+ I+LISDE Y V+
Sbjct: 168 KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP 227
Query: 65 SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND-----DTVVAAATKMS 119
I + +N+ V VYS SK L LPG R+G I N D +VAA +
Sbjct: 228 YIFKY-----YDNSIV------VYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFAN 276
Query: 120 -SFGLV--SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK-LVSGLEKAGISCLKSN 175
G V + Q +++ L A +S K+ R L GL + G C+K
Sbjct: 277 RILGFVNAPALMQRVVAKCLD----ATVDVSIYKRN-----RDLLYDGLTELGFECVKPQ 327
Query: 176 AGLFCWVDMRHLLS-SNTF-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMS 233
+ + + F E + L + PGS C PG+FR+ + +
Sbjct: 328 GAFYLFP--KSPEEDDVAFCEKAKKH--------NLLLVPGSGFGC--PGYFRLSYC-VD 374
Query: 234 EDTLKLSMQRLKAFV 248
+T++ S+ +
Sbjct: 375 TETIERSLPAFEKLA 389
|
Length = 394 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 33/252 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K ++V NPSNP G+ SR+ L + + I +I+DEIY VF F+ +
Sbjct: 169 KTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASF- 227
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND------DTVVAAATKMSSFGLV 124
+ V V + +SK +PG+R+G I +D DTV+ +
Sbjct: 228 ------ASIV--PVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ---R 276
Query: 125 SSQTQYLLSALLSD--KKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFC 180
++ L D + Q + LK + +L K G+ C K ++
Sbjct: 277 ILGPATIVQGALPDILENTPQEFFDGKISVLK-SNAELCYEELKDIPGLVCPKPEGAMYL 335
Query: 181 WV--DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRVCFANMSEDTL 237
V ++ + +++ +K+ + + PGS P W R+ L
Sbjct: 336 MVKLELELF---PEIKDDVDFCEKLAREESVICLPGS---AFGLPNWVRITITVPESM-L 388
Query: 238 KLSMQRLKAFVD 249
+ + R+K F +
Sbjct: 389 EEACSRIKEFCE 400
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 30/246 (12%)
Query: 11 KVKGVLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIME 68
K K V VT P+ NP G TMS L+ + ++ +I D+ Y + P +
Sbjct: 226 KPKAVYVT-PTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPL-- 282
Query: 69 ILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTV-VAAATKMSSFGLVS 125
D RV +Y S SK L PG R+G + + + + K ++ S
Sbjct: 283 KALDAP-------GRV--IYLGSFSKTL-APGLRLGYVVAPPELIEKLLRLKQAADLGPS 332
Query: 126 SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWV 182
S +Q L+A L + ++ ++ +R L+ L + GLF W+
Sbjct: 333 SLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWL 391
Query: 183 DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC--HCTEPGWFRVCFANMSEDTLKLS 240
++ + + L K +V GS+ R+ F++ SE+ ++
Sbjct: 392 ELPEGIDAREL-LAAALEKGVVVTP-----LGSAFSADGDPRNGLRLSFSSPSEEEIEEG 445
Query: 241 MQRLKA 246
++RL A
Sbjct: 446 IKRLAA 451
|
Length = 459 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-14
Identities = 52/244 (21%), Positives = 112/244 (45%), Gaps = 27/244 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
K K +L+ +P+NP G ++++EL + + + ++ ++SDEIY+ + + S I
Sbjct: 154 KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIK 212
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT 128
+++R ++ SK + G+R+G I + A K+ + ++ + T
Sbjct: 213 GMRERTI----------LISGFSKGFAMTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPT 261
Query: 129 --QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
Q+ A L + + + + ++R V+ + G++C + + +
Sbjct: 262 MAQF---AALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISS 318
Query: 187 L-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
LSS F ++ L +K+ + PGS + G+ R +A S + L+ +M+R+K
Sbjct: 319 TGLSSEEFAEQLLLEEKVA------VVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMK 371
Query: 246 AFVD 249
FV+
Sbjct: 372 RFVE 375
|
Length = 378 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
K K + + P+NP G LV F E NI + D YS F S +E+
Sbjct: 164 KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVD 223
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT 128
KD E +SLSK + G+R+G N D ++A K+ + + S
Sbjct: 224 GAKDVGIE----------FHSLSKTYNMTGWRIGMAVGNAD-LIAGLGKVKT-NVDSGVF 271
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
Q + A ++ Q+ + E +K ++R L+ L+K GI K A + WV +
Sbjct: 272 QAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGY 331
Query: 189 SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247
+S F A + +V ++PG G+ R+ + ++ L+ ++ R+K
Sbjct: 332 TSAEFAARLLEETGVV------VTPGVGFGEYGEGYIRISL-TVPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K V + NP+NP GT + R EL L+ + ++ DE Y FS S +E+L
Sbjct: 145 KTKLVFLCNPNNPTGTLLPREELRALLE-ALPEGGLVVIDEAYIE--FSPE---SSLELL 198
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQY 130
K + ++ + SK GL G RVG +N + + A F VSS
Sbjct: 199 KYPPN--------LIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN-VSSPALA 249
Query: 131 LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS 190
A L D +Y+ E+ +R+++ +L + L+ G+ + + F V + ++
Sbjct: 250 AAIAALRD----ADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRVPDAEAA 305
Query: 191 NTFEAEMELWKKIVY 205
EA L KK +
Sbjct: 306 ALAEA---LLKKGIL 317
|
Length = 356 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 6e-13
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 23/209 (11%)
Query: 20 PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79
P NP G T R+ L + E I L SDE Y+ F P S +E+ +
Sbjct: 145 PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPP-HSALEVGIE------- 196
Query: 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQ-TQYLLSALLSD 138
V +SLSK G+ G+R G + ++ + ++FG+ S Q A SD
Sbjct: 197 ---NVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSD 253
Query: 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEME 198
N++ E +K K++ + K G+ L +A + WV + + + + +
Sbjct: 254 ----DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRL- 308
Query: 199 LWKKIVYDVKLNISPGSSCHCTEPGWFRV 227
L IV ++PG + E G+ RV
Sbjct: 309 LENGIV------VAPGENFGSGEEGYVRV 331
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-13
Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K + V NP+NP G + L +++ E ++ +ISDEIY + VS +
Sbjct: 166 KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLT 224
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND-----DTVVAAATKMSSFGLV- 124
KD V ++ LSK G+R+G IY D V A K++ L
Sbjct: 225 KDVP---------VIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCP 275
Query: 125 SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL-EKAGISCLKSNAGLFCWVD 183
++ Q+ A L+ +Y+ E K+LK+R + L E GIS K + +
Sbjct: 276 NTPAQFAAIAGLTG---PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPR 332
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ ++ + E ++++ + GS G FR+ F + L+ +M R
Sbjct: 333 ----IEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDR 387
Query: 244 LKAFV 248
+ F+
Sbjct: 388 FEEFM 392
|
Length = 398 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 52/259 (20%), Positives = 100/259 (38%), Gaps = 39/259 (15%)
Query: 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIM 67
+VK ++ NP NP G ++ EL + + +ISDEI++ V +
Sbjct: 155 VDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA 214
Query: 68 EILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDTVVAAATKM-------- 118
+ + + + S SK L G + I SN + ++
Sbjct: 215 SL-------SERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGP 267
Query: 119 SSFGLVSSQTQY-----LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLK 173
S+ G+++++ Y L LL Y+ +N+ + K + G+ +
Sbjct: 268 SALGIIATEAAYNQGEPWLDELL-------EYLKDNRDYVADFLNKHLP-----GVKVTE 315
Query: 174 SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMS 233
W+D R L + EL + ++ + K+ +SPGS+ G+ R+ FA
Sbjct: 316 PQGTYLAWLDCREL----GLDDS-ELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA-CP 369
Query: 234 EDTLKLSMQRLKAFVDSIT 252
L+ +++RLK +
Sbjct: 370 RAILEEALERLKRALKKRR 388
|
Length = 388 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 54/263 (20%), Positives = 96/263 (36%), Gaps = 49/263 (18%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
L K + +L+ +P NP+G +R EL L N+ ++SDEI++ V+ P
Sbjct: 149 DLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRHNVVVVSDEIHADLVY--PP 206
Query: 63 -----FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK 117
S+ E+ R + S K + G + + + A +
Sbjct: 207 NKHIPLASLSP----------EIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQE 256
Query: 118 ---------MSSFGLVSSQTQY-----LLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163
+ FG V+ + Y L ALL+ Y+ N+ +++ K
Sbjct: 257 AAQRVHIQHGNLFGYVAFEAAYREGEPWLDALLA-------YLRGNRDLVEEFIAK---- 305
Query: 164 LEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223
I A W+D R L + +L + L ++PG S G
Sbjct: 306 -RLPQIRVRPPEATYLAWLDCRALGLDDA-----DLRAFFIEQAGLGLNPGISFGDGGSG 359
Query: 224 WFRVCFANMSEDTLKLSMQRLKA 246
+ R+ F TL+ +++RL+
Sbjct: 360 FMRLNFG-CPRSTLEQALERLRQ 381
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 8e-12
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHL--ISDEIYSGTVFSSPGFVSIME 68
+K + + NPSNP MS L + + + EK L I+D++Y GT F F S+
Sbjct: 241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVY-GT-F-VDDFRSLFA 297
Query: 69 ILKDRNCENTEVWNRVHI-VYSLSKDLGLPGFRVGAIYSNDDTVV 112
+L NT I VYS SK G G+R+G I ++D V
Sbjct: 298 VLP----YNT-------ILVYSFSKYFGATGWRLGVIALHEDNVF 331
|
Length = 527 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF----SSPGFVSI 66
+ + + + +P+NP G T SR++L ++ + +++DE+Y + +P F+ I
Sbjct: 158 RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDI 217
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-LVS 125
E D +R+ V S SK+ + G+R+G + VA L+
Sbjct: 218 AE--PD---------DRIIFVNSFSKNWAMTGWRLGWL-------VAPPALGQVLEKLI- 258
Query: 126 SQTQYLLSALLSDKKFAQ-----------NYISENKKRLKQRHRKLVSGLEKA-GISCLK 173
+Y S + F Q ++++E RL++ LV L G+ K
Sbjct: 259 ---EYNTSCVAQ---FVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAK 312
Query: 174 SNAG--LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231
+ F + + L K++V + L ++PG++ G+ R CFA
Sbjct: 313 PDGAMYAFFRIP--------GVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR 364
Query: 232 MSEDTLKLSMQRLKAFV 248
L +++RL+ F+
Sbjct: 365 -DPARLDEAVERLRRFL 380
|
Length = 382 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + +P NP G +S +EL +V + E+ + SDE Y + + IL
Sbjct: 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEG----RPVSIL 197
Query: 71 KDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA---AATKMSSFGLVSS 126
R C + + V+SLSK L G+R G + + D +VA K + +V +
Sbjct: 198 DPRVCGGDHT---GLLAVHSLSKRSNLAGYRAGFV-AGDPALVAELLTVRKHAGL-MVPA 252
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 181
Q + A L D +++E K R R +L LEKAG S AGL+ W
Sbjct: 253 PVQAAMVAALGD----DGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW 303
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHL--ISDEIYSGTVFSSPGFVSIME 68
+K + V NPSNP MS + +V+ + L ++D++Y GT F S+
Sbjct: 240 SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVY-GTF--VDDFRSLFA 296
Query: 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAI 104
L NT VYS SK G G+R+G I
Sbjct: 297 ELP----YNTI------GVYSFSKYFGATGWRLGTI 322
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 27/244 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ +GVL+ +PSNP GT+++ +EL +V + + I DEIY G + + VS + +
Sbjct: 163 RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAP-VSALSLG 221
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQT 128
D V + S SK + G+R+G + + +V K++ F S+
Sbjct: 222 DD-----------VITINSFSKYFNMTGWRLGWLVV-PEALVGTFEKLAQNLFICASALA 269
Query: 129 QYLLSALLSDKKFAQNYISENKKR---LKQRHRKLVSGLEKAGISC-LKSNAGLFCWVDM 184
Q+ +AL F + ++ ++R K+R +V LE G + + + + D
Sbjct: 270 QH--AALAC---FEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADC 324
Query: 185 RHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF-RVCFANMSEDTLKLSMQR 243
R + ++ L + +++D + + PG P + R+ +A S L+ ++ R
Sbjct: 325 RGVAHPAAGDS-AALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVAR 382
Query: 244 LKAF 247
L
Sbjct: 383 LGKL 386
|
Length = 388 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 32/209 (15%)
Query: 16 LVTN-PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKD 72
++ PSNP + +V ++ ++ D Y+ V+ SIM++ KD
Sbjct: 168 MILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKD 227
Query: 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGLVSSQTQ 129
E ++LSK + G+R+G + N + +V+A ++ S +G +
Sbjct: 228 VAVE----------FFTLSKSYNMAGWRIGFMVGNPE-LVSALARIKSYHDYGTFTPLQV 276
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM----R 185
++AL D Q + + ++ K+R LV GL +AG A ++ W +
Sbjct: 277 AAIAALEGD----QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYA 332
Query: 186 HLLSSNTFEAEMELWKKIVYDVKLNISPG 214
+ S +E KK++ + K+ +SPG
Sbjct: 333 AMGS-------LEFAKKLLNEAKVCVSPG 354
|
Length = 395 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 53/263 (20%)
Query: 15 VLVTN-PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LK 71
L+ N PSNP + +V F + +I ++SD YS F S++++ K
Sbjct: 168 ALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAK 227
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT--Q 129
D E T S+SK + G+R+G N+ ++AA T++ S+ + T Q
Sbjct: 228 DVTVEFT----------SMSKTFSMAGWRMGFAVGNE-RLIAALTRVKSYLDYGAFTPIQ 276
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM----R 185
+A L+ Q+ I+E ++ K+R LV +AG A +F W + R
Sbjct: 277 VAATAALNG---PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFR 333
Query: 186 HLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM---- 241
HL S +E K +V + ++PG V F + +++++
Sbjct: 334 HLGS-------LEFSKLLVEKADVAVAPG------------VGFGEHGDGYVRIALVENE 374
Query: 242 QRL-------KAFVDSITTTLHN 257
QR+ K F+ S TLHN
Sbjct: 375 QRIRQAARNIKRFLSSADETLHN 397
|
Length = 405 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 24/246 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K +++ NP+NP G R L +V+ E + + SDEIY V SI +
Sbjct: 281 RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLA 340
Query: 71 KDRNCENTEVWNRVHIVYS-LSKDLGLPGFRVGAIYSNDDTVVAA-----ATKMSSFGLV 124
D C + +S LSK + G+R+G + + + +A +++ L
Sbjct: 341 PDLFC----------VTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLC 390
Query: 125 SS-QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLFCW 181
S+ Q ++ L + ++Y+ + +Q R+LV A GIS +K A + +
Sbjct: 391 SNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ--RELVYNALNAIPGISAVKPKAAFYIF 448
Query: 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241
+ + + + +++D K+ I G+ + +P FRV + ED L+ +M
Sbjct: 449 PKID--VKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLED-LEDAM 505
Query: 242 QRLKAF 247
RL F
Sbjct: 506 DRLADF 511
|
Length = 517 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 6e-10
Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 40/252 (15%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
+ K VL+ NP NP G R EL LL F + I DE++ VF + +M +
Sbjct: 159 RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLP 218
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT 128
+++R V I S K L G++VG V AA + +++
Sbjct: 219 GMRERT---------VKI-GSAGKIFSLTGWKVG-------FVCAAPPLLR---VLAKAH 258
Query: 129 QYL-------LSALLS---DKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 178
Q+L L A ++ K +Y + L + +L +GL + G L S
Sbjct: 259 QFLTFTTPPNLQAAVAYGLGK--PDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTY 316
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP--GWFRVCFANMSEDT 236
F VD+ E ++ +++V + + P S+ + +P R CFA + T
Sbjct: 317 FLTVDLA---PLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDAT 372
Query: 237 LKLSMQRLKAFV 248
L +++RL A
Sbjct: 373 LDEAVERLAAAR 384
|
Length = 387 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-10
Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 29/253 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFSS---PGFVSI 66
+ + +++ PSNP G SR EL L + + ++ +++D+IY F P ++
Sbjct: 166 RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAA 225
Query: 67 MEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVS 125
L+D RV + +SK + G+R+G D + A S S S
Sbjct: 226 APELRD----------RVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPS 275
Query: 126 SQTQ-YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVD 183
S +Q +AL D Q++++E+ KQR ++ L G+SCL + + +V+
Sbjct: 276 SISQAAAAAALNGD----QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVN 331
Query: 184 MRHLLSSNT-----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238
L+ T E + ++ ++ + + G++ + P +FR+ A S +TL+
Sbjct: 332 CAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTA-YGLSP-YFRLSIAT-SLETLE 388
Query: 239 LSMQRLKAFVDSI 251
+ R++ V ++
Sbjct: 389 EACARIERAVAAL 401
|
Length = 402 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 9e-10
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 41/193 (21%)
Query: 9 HLKVKG----VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFV 64
HL + + V+ P+NP G ++ EL L + NI L+ D Y G F PG +
Sbjct: 173 HLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY-GPPF--PGII 229
Query: 65 SIMEILKDRNCENTEVW--NRVHIVYSLSKDLGLPGFRVGAIYSNDDT---VVAAATKMS 119
E T +W N + SLSK LGLPG R G + ++++ + +S
Sbjct: 230 FS---------EATPLWNPNIIL-CMSLSK-LGLPGVRCGIVIADEEIIEALSNMNGIIS 278
Query: 120 ----SFGLVSSQTQYLLSALLSDKKFAQNYISEN--KKRLKQRHRKLVSGLEKA--GISC 171
G + + ++ + +SE + +Q+ + ++ L + C
Sbjct: 279 LAPGRLG------PAIAAEMIESGDLLR--LSETVIRPFYRQKVQLAIALLRRYLPDEPC 330
Query: 172 L--KSNAGLFCWV 182
L K +F W+
Sbjct: 331 LIHKPEGAIFLWL 343
|
Length = 416 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 46/248 (18%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIY----SGTV-----FSSPGFVS 65
LVT P+NP G L+ L + I LI DE Y SG F+ P
Sbjct: 168 ALVT-PNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD--- 223
Query: 66 IMEILKDRNCENTEVWNR--VHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL 123
W+ VH+ YS SK L G RVGA+ ++ + M + +
Sbjct: 224 ---------------WDDTLVHL-YSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAI 267
Query: 124 VSSQ-TQY-LLSAL--LSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
+ + Q + L L+D + + N+ + +R + + L ++ F
Sbjct: 268 CAPRIGQIAVAWGLPNLAD------WRAGNRAEIARRRDAFRAVFARLPGWELLASGAYF 321
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
+V RH E+ +++ + + PG+ + G+ R+ FAN +
Sbjct: 322 AYV--RHPFPD---RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGE 376
Query: 240 SMQRLKAF 247
++RL+AF
Sbjct: 377 LVERLRAF 384
|
Length = 386 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 73
G LV +P+NP GT +SR+EL L + + HL+ DEIY G + S++E+ D
Sbjct: 168 GALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDA-ASVLEVDDD- 225
Query: 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVG 102
++ S SK G+ G+R+G
Sbjct: 226 ----------AFVLNSFSKYFGMTGWRLG 244
|
Length = 387 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFV--SIME 68
K K V+V P NP T+ ++ LV ++ ++ISD Y+ F G+ SI+E
Sbjct: 175 KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFD--GYKTPSILE 232
Query: 69 I--LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGL 123
+ KD E+ Y+LSK + G+RVG + N +V A K+ S +G+
Sbjct: 233 VEGAKDVAVES----------YTLSKSYNMAGWRVGFVVGN-KKLVGALKKIKSWLDYGM 281
Query: 124 VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
+ AL D Q+ + E ++ ++R L+ AG K A +F W
Sbjct: 282 FTPIQVAATIALDGD----QSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAK 337
Query: 184 ----MRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214
RHL S +E K+++ + K+ +SPG
Sbjct: 338 IPEPARHLGS-------LEFSKQLLTEAKVAVSPG 365
|
Length = 403 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 42/255 (16%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+L + K + + N +NP G M R L +V + +++SDE+Y
Sbjct: 145 ELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLD-EDGS 203
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
SI +++ + S+SK LPG RVG I +N++ V
Sbjct: 204 TPSI-----------ADLYEKGISTNSMSKTYSLPGIRVGWIAANEE--VIDI------- 243
Query: 123 LVSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSG--------LEK-AGISCL 172
+ Y ++ A + D A E++ + +R+RK+V + K +S +
Sbjct: 244 -LRKYRDYTMICAGVFDDMLAS-LALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYV 301
Query: 173 KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232
K A +V + + S F ++L K+ V L PG+ G R+ +
Sbjct: 302 KPKAVSTSFVKLDVDMPSEDF--CLKLLKE--TGVLL--VPGN--RFDLEGHVRIGYCC- 352
Query: 233 SEDTLKLSMQRLKAF 247
+TLK +++L F
Sbjct: 353 DTETLKKGLKKLSEF 367
|
Length = 373 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 21/239 (8%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K + +L+ P NP G +R EL L+ + E ++ +DE+Y F +S+ +
Sbjct: 187 KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASL- 244
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDTV-VAAATKMSSFGLVSSQT 128
++ R + SL K L G+++G AI T V A +F ++
Sbjct: 245 -------PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA-TATPM 296
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
Q+ A L + ++Y E K+ + LV GL++ G S+ F VD H
Sbjct: 297 QWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVD--H-- 349
Query: 189 SSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFA-NMSEDTLKLSMQRLK 245
+ FE ++ + ++ +V + P S + E G V FA E+TL+ +++R+K
Sbjct: 350 TPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMK 408
|
Length = 413 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 9e-09
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 36/208 (17%)
Query: 3 QLAQKRHLKVKGVL-----------VTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDE 51
+LA ++ + + +PSNP G + + L +V + E+ + SDE
Sbjct: 129 RLAGATVVRADSLTELGPQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDE 188
Query: 52 IYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV 111
Y + + VSI L R C + V+SLSK L G+R G + + D +
Sbjct: 189 CYLELGWDAEP-VSI---LDPRVCGGDH--TGLLAVHSLSKQSNLAGYRAGFV-AGDPAL 241
Query: 112 VA---AATKMSSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167
VA K + G+ V + Q + A L D + E ++R +R L LE A
Sbjct: 242 VAELLEVRKHA--GMMVPAPVQAAMVAALGDDAHVR----EQRERYARRRAVLRPALEAA 295
Query: 168 GISCLKSNAGLF--------CWVDMRHL 187
G S AGL+ CW + L
Sbjct: 296 GFRVDHSEAGLYLWATRGEDCWDTVAWL 323
|
Length = 364 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-08
Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
QL K ++V NPSNP G+ SR L ++ + + +I+DEIY VFS
Sbjct: 160 QLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGAT 219
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND---------DTVVA 113
F + + ++ V + L+K +PG+R+G I +D D +V
Sbjct: 220 FEPVASL-------SSNV--PILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVK 270
Query: 114 AATKMSSFGLVSSQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL-EKAGIS 170
+ + ++ T Q L ++L + Q Y L+ L G+
Sbjct: 271 LSQR-----ILGPCTIVQGALPSIL--LRTPQEYFDGTLSVLESNAMLCYGALAAVPGLQ 323
Query: 171 CLKSNAG--LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-PGWFRV 227
+ + + ++M H F+ ++E ++++ + + PGS C E PG+FRV
Sbjct: 324 PVMPSGAMYMMVGIEMEHF---PEFKNDVEFTERLIAEQSVFCLPGS---CFEYPGFFRV 377
Query: 228 CFANMSEDTLKLSMQRLKAFVD 249
+ + R++ F +
Sbjct: 378 VLTVPVVMMEE-ACSRIQEFCE 398
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS- 59
AY+ A + + + ++V NP NP G ++R+ + ++ F EK I L++DE+Y ++
Sbjct: 208 AYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDG 267
Query: 60 SPGFVSIMEILKDRNCENTEVWNRVHIV--YSLSKDL-GLPGFRVG--AIYSNDDTVVAA 114
F+S ++L + E V +V +S SK + G G R G + + V
Sbjct: 268 EKPFISFRKVLLELPAEYN---TDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQ 324
Query: 115 ATKMSSFGLVSSQTQYLLSALLSD--KKFAQNYISENKKR------LKQRHRKLVSGLEK 166
K++S L S+ L++ L+ + ++ +Y ++R LK+R L L K
Sbjct: 325 IYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK 384
Query: 167 A-GISC 171
G+SC
Sbjct: 385 IEGVSC 390
|
Length = 481 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 46/260 (17%)
Query: 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF 63
L ++ H+ + + + +P+NP GT +++ +L LV++ E ++ D YS + S P
Sbjct: 168 LPEEPHIDI--IYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFI-SDPSL 224
Query: 64 -VSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-------AIYSNDDTVVA-- 113
SI EI R C E S SK G G R+G Y++ +V+
Sbjct: 225 PHSIFEIPGARFCA-IE-------FRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDW 276
Query: 114 ---AATKMSSFGLVSSQTQYLLSALLSDKKFAQN-----YISENKKRLKQRHRKLVSGLE 165
TK F S Q A + + Y EN + L++ LE
Sbjct: 277 ERRQCTK---FNGASYPVQRAAEAGYAGEGLQPILEAISYYMENARILRK-------ALE 326
Query: 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225
AG + WV +SS + + ++Y+ + +PGS + G+
Sbjct: 327 AAGFKVYGGEHAPYLWVKTPEGISS------WDFFDFLLYEYHVVGTPGSGFGPSGEGFV 380
Query: 226 RVCFANMSEDTLKLSMQRLK 245
R E+ ++ + +R+K
Sbjct: 381 RFSAFGKRENIIE-ACERIK 399
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSI--ME 68
K K +++ +P+NP G S+ L + E ++ +ISDE+Y G F FV + +
Sbjct: 162 KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLA 220
Query: 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG 102
+ +R S SKD + G+R+G
Sbjct: 221 GMPERTI----------TFGSFSKDFAMTGWRIG 244
|
Length = 384 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 20 PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCEN 77
PSNP T R +V F + I L+ D Y+ F S++EI KD E
Sbjct: 179 PSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVE- 237
Query: 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSAL 135
++LSK + G+RVG + N + T ++ +G+ S+ + +AL
Sbjct: 238 ---------FHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETAL 288
Query: 136 -LSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTF 193
L D +Y+ + ++R + R L+ GL + G + + A ++ WV + S F
Sbjct: 289 QLPD-----SYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPVGMGSTDF 342
|
Length = 394 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-08
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 26/180 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
K K + + P+NP G +V+F + +I + D YS + S +E+
Sbjct: 166 KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVP 225
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS------FG 122
KD E +SLSK + G+R+G N D ++A K+ S F
Sbjct: 226 GAKDVGIE----------FHSLSKTYNMTGWRIGFAVGNAD-LIAGLGKVKSNVDSGVFQ 274
Query: 123 LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 182
+ Q A L+ Q + E +K ++R LV GL K G+ A + W
Sbjct: 275 AI----QEAGIAALNG---PQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWA 327
|
Length = 385 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 36/248 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + ++V P NP T S +L L +I ++SDE+Y VF S+
Sbjct: 162 RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSM---- 217
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT------KMSSFGLV 124
+ E+ R IV S K + G+RVG +A A K+ F +
Sbjct: 218 ----ARHRELAERSVIVSSFGKSYHVTGWRVG-------YCLAPAELMDEIRKVHQFMVF 266
Query: 125 SSQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRK-LVSGLEKAGISCLKSNAGLFCW 181
S+ T Q+ + L++ +Y+ QR R L L + L S F
Sbjct: 267 SADTPMQHAFAEALAEP---ASYLGLGA--FYQRKRDLLARELAGSRFELLPSEGSFFML 321
Query: 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKL 239
RH S+ E++ + +++ D ++ P S+ + T+ G R+ F+ + TL
Sbjct: 322 ARFRHF--SD--ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVE 376
Query: 240 SMQRLKAF 247
+RL +
Sbjct: 377 GARRLCSL 384
|
Length = 384 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 61/261 (23%), Positives = 102/261 (39%), Gaps = 54/261 (20%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFI-TEKNIHLISDEIYSGTVFS-----SPGFV 64
K + ++ +P+NP G L VN I E I+ ISDE Y + SPG
Sbjct: 160 KTRAIVTISPNNPTGVVYPEALLRA-VNQICAEHGIYHISDEAYEYFTYDGVKHFSPG-- 216
Query: 65 SIMEILKDRNCENTEVWNRVHIV--YSLSKDLGLPGFRVG----------AIYSNDDTVV 112
SI N H + YSLSK G +R+G AI DT++
Sbjct: 217 SIPG------SGN-------HTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTIL 263
Query: 113 AAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISC- 171
+S QY L K +Y ++ + Q + L+ L + C
Sbjct: 264 ICPPVVS---------QYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRCT 311
Query: 172 -LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230
+N +C L NT + EL K+++ + ++ + PG++ + R+ +
Sbjct: 312 LHPANGAFYC------FLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG 365
Query: 231 NMSEDTLKLSMQRLKAFVDSI 251
+ + T K ++RL + +I
Sbjct: 366 ALQKATAKEGIERLVQGLKTI 386
|
Length = 389 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 73
+++ NP NP G+ S LN + + I +I+DE+Y VF S FV M +
Sbjct: 173 AMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-MGLF--- 228
Query: 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT----VVAAATKMSSFGLVSSQTQ 129
+ V V + S+SK +PG+ +G + + D + + A + +
Sbjct: 229 ---ASIV--PVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPP 283
Query: 130 YLLSALLSD--KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCL----KSNAGLFCWVD 183
+ A + + +K +++ S+ L+ L++ I C+ K+ F V
Sbjct: 284 TFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE--IPCIMCPQKAEGAFFALVK 341
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ LL + E +ME K+ + L I PG + W R+ FA + + +L+ + R
Sbjct: 342 LNLLLLED-IEDDMEFCLKLAKEESLIILPGVTVGLKN--WLRITFA-VEQSSLEDGLGR 397
Query: 244 LKAF 247
LK+F
Sbjct: 398 LKSF 401
|
Length = 409 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 60/202 (29%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + ++V +P NP GT ++ EL + E ++ +I+DE+Y VF
Sbjct: 159 RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFD----------- 207
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV-VAAATKMSSF-----GLV 124
H+ L+ LPG R + TV +++A K + G
Sbjct: 208 -----------GARHL--PLA---TLPGMR-------ERTVTISSAAKTFNVTGWKIGWA 244
Query: 125 SSQTQYLLSALLSDKKF-------------------AQNYISENKKRLKQRHRKLVSGLE 165
L++A+ + K++ +++ + L+ + +L +GL
Sbjct: 245 CG-PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLA 303
Query: 166 KAGISCLKSNAGLFCWVDMRHL 187
+AG S F D R L
Sbjct: 304 EAGFEVHDSAGTYFLCADPRPL 325
|
Length = 387 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
+ G+L+ NP NP G + L +V+ E ++ +I DEIY+ V++ V + E++
Sbjct: 172 IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG 231
Query: 72 DRNCENTEVWNRVHIV-----YSLSKDLGLPGFRVGAI--YSND-DTVVAA------ATK 117
D V +SK+L PG R G I Y+ D D V K
Sbjct: 232 D--------------VPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAK 277
Query: 118 MSSFGLVSSQT--QYLLSALLSDKKFAQNYISENKKRLKQR 156
M V S T Q + ++S ++ +NY+ E KR ++R
Sbjct: 278 MIE---VCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKR 314
|
Length = 433 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-07
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 27/241 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
K K +++ P NP+ + ++ F + NI ++ D Y+ F +S + +
Sbjct: 166 KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVP 225
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSS 126
K+ E + SLSK L G R+G + N++ V A S+ +G V
Sbjct: 226 GAKEVGVE----------INSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYG-VFL 274
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
Q A L + + +N+ ++R LV G G + K +F W ++
Sbjct: 275 PIQKAACAAL---RNGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPK 331
Query: 187 LLSSNTF-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
+S +F A M+ +V +PG + G+ R+ E+ L+ +++ ++
Sbjct: 332 GWTSLSFAYALMDRANVVV-------TPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIR 383
Query: 246 A 246
Sbjct: 384 N 384
|
Length = 399 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
+ + +P NPLG++ + E+ + + L+ D Y F+ ++ +
Sbjct: 161 IYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRD--FAREHTLAA-----EYA 213
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV-VAAATKMSSFGLVSSQTQYLLS 133
E+T YS SK G+ G R+GA+ + D + V + ++ G + Q
Sbjct: 214 PEHTVT------SYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLG-TNVIAQEAAI 266
Query: 134 ALLSDK 139
A L K
Sbjct: 267 AGLKVK 272
|
Length = 380 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
V + NP+NP G +S+ E+ +++ ++NI+LI DE + + + I + +N
Sbjct: 145 VFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKN 204
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSA 134
+ I+ + +K +PG R+G +++ + +M +++
Sbjct: 205 ---------LIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQT 255
Query: 135 LLSDKKFAQ---NYISENKKRLKQR 156
LL DK++ + +I E K L
Sbjct: 256 LLDDKEYIKKTIQWIKEEKDFLYNG 280
|
Length = 354 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 45/253 (17%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
+++ NP+NP G+ S L + + I +I+DE+Y F S FV +
Sbjct: 194 MVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPM-------- 245
Query: 75 CENTEVWNRVHIVY---SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYL 131
V+ V V S+SK +PG+R+G I + D + TK +V S YL
Sbjct: 246 ----GVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETK-----VVDSIRNYL 296
Query: 132 LSALLSD-KKFAQN---YISENKKRLKQRHRKLVSGLEKA---------GISCL----KS 174
+ +D F Q I N K ++ K + L++ I C+ K
Sbjct: 297 --NISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKIKEIKCITCPHKP 352
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234
+F V + L + + +M+ K+ + + + PGS+ W R+ FA +
Sbjct: 353 EGSMFVMVKL-DLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKN--WLRITFA-IDP 408
Query: 235 DTLKLSMQRLKAF 247
+L+ ++RLK+F
Sbjct: 409 PSLEDGLERLKSF 421
|
Length = 430 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIME--ILKD 72
V++ +P+NP G T+S EL V + + LI+DE YS ++P S++E IL
Sbjct: 159 VILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPP-PSLLEASILVG 217
Query: 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAI 104
N N V ++ S+SK PG R G I
Sbjct: 218 ----NESFKN-VLVINSISKRSSAPGLRSGFI 244
|
Length = 374 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 23/239 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + +++ P+NP G T+ + + + + NI+++SDE Y ++ +++
Sbjct: 166 RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA 225
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQT 128
D NT + N S SK + G+R+G + + + V+ K+ ++ G V+S
Sbjct: 226 PD----NTILAN------SFSKTFAMTGWRLGFVIAPEQ-VIKDMIKLHAYIIGNVASFV 274
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHL 187
Q L K+ + + E +K +R + ++ L++ I + + + ++
Sbjct: 275 QIAGIEALRSKE-SWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET 333
Query: 188 -LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
+SS F AE L K V + PG++ G+ R+ +A E ++ +M+R++
Sbjct: 334 GMSSEDF-AEWLLEKARVV-----VIPGTAFGKAGEGYIRISYATSKEKLIE-AMERME 385
|
Length = 391 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 54/241 (22%), Positives = 95/241 (39%), Gaps = 35/241 (14%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
+++ P NP GT S ++ L I +I+++SDE+Y VF G S+
Sbjct: 167 IILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASV-------- 218
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSA 134
+ E+ R +V S K + G++VG VA A + F V QY
Sbjct: 219 LRHPELRERAFVVSSFGKTYHVTGWKVG-------YCVAPAALSAEFRKVH---QYNTFT 268
Query: 135 LLSDKKFA-QNYISENKKRLKQ-----RHRK--LVSGLEKAGISCLKSNAGLFCWVDMRH 186
+ + + A +Y+ + + + ++ + L + L F VD
Sbjct: 269 VNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSA 328
Query: 187 LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP---GWFRVCFANMSEDTLKLSMQR 243
+ S+ + E W + + + P S +P R+CFA E+TL + +R
Sbjct: 329 I--SDLDDVEFCQW--LTREHGVAAIP-LSVFYADPFPHRLVRLCFAK-QEETLDAAAER 382
Query: 244 L 244
L
Sbjct: 383 L 383
|
Length = 386 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 21/168 (12%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K V + +P+NP G +SR+++ ++ E + ++ DE Y FS G S + +L
Sbjct: 142 KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVV-DEAY--GEFS--GEPSTLPLL 196
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQ 129
+ N + ++ +LSK GL G R+G +N + ++ A K+ F +S Q
Sbjct: 197 AEYP-------NLI-VLRTLSKAFGLAGLRIGYAIANAE-IIDALNKVRAPFN-LSRLAQ 246
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNA 176
A L D ++I + + + +L GL+K G+ S+A
Sbjct: 247 AAAIAALRD----DDFIEKTVEEINAERERLYDGLKKLPGLEVYPSDA 290
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 27/214 (12%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
++V NP+NP G + L L + + L+ DE + P S+ R
Sbjct: 129 LVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFT---PDA-SLAP-QAARF 183
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSA 134
+ ++ SL+K GL G R+G + ++ + + + V+ A
Sbjct: 184 -------PGLVVLRSLTKFFGLAGLRLGFVVAHPALIARLREALGPWT-VNGPALAAGRA 235
Query: 135 LLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFE 194
L+D + + + RL +L + L + G + LF V ++ E
Sbjct: 236 ALADT----AWQAATRARLAAERARLAALLARLGGLRVVGGTALFLLVRTPD--AAALHE 289
Query: 195 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228
A L ++ + I + +P + R
Sbjct: 290 A---LARRGIL-----IRDFDNFPGLDPRYLRFA 315
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 2e-05
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 73
++V NP+NP G S + L + + I +ISDE+Y T+F FVS+ +
Sbjct: 207 AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS-- 264
Query: 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM 118
V + +SK +PG+++G I ND V TK+
Sbjct: 265 -------IVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKV 302
|
Length = 462 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 86 IVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQN 144
++ S+SK LG P R+ + S+ T +++S VS Q L+ A L+D ++ Q
Sbjct: 276 LIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QA 333
Query: 145 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 182
+++ + QR +KL L++ GI+ GL W+
Sbjct: 334 RLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWL 371
|
Length = 431 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 5e-05
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 72
K V + NP+NP GT ++ +L + I+E N ++ DE Y V ++ F + +L
Sbjct: 153 KIVWICNPNNPTGTYVNDRKLTQFIEGISE-NTLIVIDEAYYEYV-TAKDFPETLPLL-- 208
Query: 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLL 132
E + ++ + SK GL FRVG +++ + F VSS Q
Sbjct: 209 ------EKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPFN-VSSLAQKAA 261
Query: 133 SALLSDKKFAQNYISENKKRLKQ 155
+ D +F + + N + L+Q
Sbjct: 262 TIAFGDDEFIEEIVRVNTEGLRQ 284
|
Length = 366 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ V+ P+NP G ++ EL L + I LI D Y F I I
Sbjct: 179 STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY------GVPFPGI--IF 230
Query: 71 KDRNCENTEVWNRVHIV-YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVS 125
D T +WN I+ SLSK LGLPG R G I +N+ V+ A T M+ G++S
Sbjct: 231 SDA----TPLWNENIILCMSLSK-LGLPGSRCGIIIANEK-VIQAITNMN--GIIS 278
|
Length = 417 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 23/174 (13%)
Query: 15 VLVTN-PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS--PGFVSIMEILK 71
+L N P+NP G ++ +V+F E NI ++ D Y+ F F+S+ K
Sbjct: 182 LLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSV-PGAK 240
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQ---T 128
+ E ++SLSK + G+R+ + N+ V A AT + S Q
Sbjct: 241 EVGVE----------IHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNND--SGQFIAI 288
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 182
Q L + + +++ +R KLV L + G + +V
Sbjct: 289 QKAGIYALDHPEI----TEKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYV 338
|
Length = 410 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS--PG 62
A+ + + V+ +++ NP NP G +S L ++ F ++ + L+ DE+Y ++ P
Sbjct: 204 ARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERP- 262
Query: 63 FVSIMEILKD 72
F+S ++L D
Sbjct: 263 FISAKKVLMD 272
|
Length = 407 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K V + NP+NP G+ + R + ++ I + ++ DE Y F G + I
Sbjct: 148 QPKLVFLCNPNNPTGSVIERED---IIKIIEKSRGIVVVDEAY----FEFYGNTIVDVIN 200
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQY 130
+ N + ++ +LSK GL G RVG +N++ + S + + S
Sbjct: 201 EFEN---------LIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPYNINSLSQVI 251
Query: 131 LLSALLSDK-KFAQNYISENKKRL 153
L L + K NYI ++RL
Sbjct: 252 ALKVLRTGVLKERVNYILNERERL 275
|
Length = 351 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 72
+ ++ +NPSNP+G+ ++ ++L +++ T ++ DE Y+ + + S + +LK
Sbjct: 161 RMLMFSNPSNPVGSWLTADQLARVLD-ATPPETLIVVDEAYAEYA-AGDDYPSALTLLKA 218
Query: 73 RNCENTEVWNRVHIVY-SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYL 131
R W IV + SK GL G RVG +D +V ++ + V+ Q
Sbjct: 219 RGLP----W----IVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAA 270
Query: 132 LSALLSDKKFAQNYISENK---KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
A L D++ ++ +RLK+ L + G S A F + D R
Sbjct: 271 ALAALDDEEHLAKGVALALAERERLKKE-------LAEMGYRIAPSRAN-FLFFDAR--- 319
Query: 189 SSNTFEAEMEL--------WKKIVYDVKLNISPGS 215
+ AE L WK+ ++ + +S GS
Sbjct: 320 RPASAVAEALLRQGVIVKPWKQPGFETFIRVSIGS 354
|
Length = 371 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 35/252 (13%)
Query: 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF 63
LAQ R + VL + P NP + V F + ++ L+ D Y VF
Sbjct: 163 LAQARLM----VL-SYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVE 217
Query: 64 V-SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
SI++ +++ + E ++LSK + GFR+G N ++ A ++ +
Sbjct: 218 PPSILQADPEKSV-SIEF-------FTLSKSYNMGGFRIGFAIGNAQ-LIQALRQVKA-- 266
Query: 123 LVSSQTQYL------LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
V QY ++AL Q + + + +QR ++ L + G A
Sbjct: 267 -VVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALHQIGWPVPLPEA 321
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE-D 235
++ W + N+ +E ++V + SPGS + G+ R FA + + D
Sbjct: 322 TMYVWAKLPEPWQGNS----VEFCTQLVAQTGVAASPGSGFGKSGEGYVR--FALVHDPD 375
Query: 236 TLKLSMQRLKAF 247
L+ +++R+ AF
Sbjct: 376 ILEEAVERIAAF 387
|
Length = 388 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 20 PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79
P+NP G R L + NI LI DE + + GF+ L D
Sbjct: 151 PNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP---QLADNPH---- 203
Query: 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA 114
+ ++ SL+K +PG R+G + ++DD VA
Sbjct: 204 ----LWVLRSLTKFYAIPGLRLGYLVNSDDAAVAR 234
|
Length = 356 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + V + NP+NP GT + E+ + + ++ ++ DE Y+ V + +E++
Sbjct: 154 RTRLVFIANPNNPTGTYLPAEEVERFLAGV-PPDVLVVLDEAYAEYV-RRKDYEDGLELV 211
Query: 71 KDRNCENTEVWNRVHIVYS--LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQ 127
N V + SK GL G RVG + + ++ A ++ F V+S
Sbjct: 212 AKF--PNV--------VVTRTFSKAYGLAGLRVGYGIAPPE-IIDALNRVRQPFN-VNSL 259
Query: 128 TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 174
A L D F + + N + + L L + G+ + S
Sbjct: 260 ALAAAVAALDDDAFVEKSRALNAEGMAW----LTEFLAELGLEYIPS 302
|
Length = 367 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSS--PGFVSIMEIL 70
V + NP+NP GT ++ EL ++F+ ++ ++ DE Y V + P + ++E
Sbjct: 155 VWICNPNNPTGTYVNHEEL---LSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKY 211
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL------V 124
++ + ++ + SK GL RVG Y +A+ + +
Sbjct: 212 EN-----------LIVLRTFSKAYGLAALRVG--Y-----GIASEELIEKLNIARPPFNT 253
Query: 125 SSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155
+ QY A L D+ F + + +N + L+Q
Sbjct: 254 TRIAQYAAIAALEDQAFLKECVEKNAEGLEQ 284
|
Length = 359 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF 58
A+ + + V+ ++V NP NP G ++ +V F ++ + L++DE+Y V+
Sbjct: 265 ARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY 318
|
Length = 534 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 20 PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCEN 77
P+NP G ++ V F + NI ++ D Y F VS ++ KD E
Sbjct: 176 PNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIE- 234
Query: 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM------SSFGLVSSQTQYL 131
+Y+LSK + G+RV N+ V+ A + S FG +
Sbjct: 235 ---------LYTLSKTFNMAGWRVAFAVGNES-VIEAINLLQDHLFVSLFGAIQ---DAA 281
Query: 132 LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 181
+ ALLSD Q+ ++E R + R +S + G F W
Sbjct: 282 IEALLSD----QSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAW 327
|
Length = 389 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K +++ NP+NP G S+ L +V + N+ + +DEIY ++ +SI +
Sbjct: 168 RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLA 227
Query: 71 KDRNCENTEVWNRVHIVYS-LSKDLGLPGFRVG 102
D C + ++ LSK + GFRVG
Sbjct: 228 PDLLC----------VTFNGLSKAYRVAGFRVG 250
|
Length = 404 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
V NP+NP G + EL L++ + ++N LI DE F+ ++ +
Sbjct: 121 VFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDE----------AFIDFVKKPESPE 170
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYS 106
EN + + +K GLPG RVG +
Sbjct: 171 GENII------KLRTFTKSYGLPGIRVGYVKG 196
|
Length = 311 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.97 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.97 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.97 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.97 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.97 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.97 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.97 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.96 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PLN02368 | 407 | alanine transaminase | 99.96 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.95 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.95 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.94 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.93 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.92 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.91 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.91 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.89 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.89 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.89 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.89 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.89 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.89 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.88 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.88 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.88 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.87 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.87 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.87 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.86 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.86 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.86 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.86 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.86 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.86 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.86 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.85 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.85 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.85 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.85 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.85 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.84 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.84 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.84 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.84 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.84 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.84 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.84 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.83 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.83 | |
| PLN02721 | 353 | threonine aldolase | 99.83 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.83 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.83 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.82 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.82 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.82 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.82 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.82 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.82 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.82 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.81 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.81 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.81 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.8 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.8 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.8 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.8 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.8 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.8 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.8 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.79 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.79 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.79 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.79 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.79 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.79 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.78 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.77 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.77 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.77 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.76 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.76 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.76 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.74 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.74 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.74 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.74 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.73 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.73 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.73 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.73 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.72 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.72 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.71 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.71 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.71 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.71 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.7 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.7 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.7 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.69 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.69 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.69 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.69 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.68 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.68 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.68 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.68 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.67 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.67 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.67 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.67 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.67 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.67 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.66 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.66 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.66 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.65 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.65 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.65 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.65 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.65 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.64 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.64 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.64 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.64 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.63 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.63 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.63 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.63 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.62 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.62 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.62 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.61 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.61 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.6 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.6 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.59 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.59 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.57 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.57 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.57 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.57 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.57 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.57 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.56 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.56 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.56 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.56 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.56 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PLN02651 | 364 | cysteine desulfurase | 99.56 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.56 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.55 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.55 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.55 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.55 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.54 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.54 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.54 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.54 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.53 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.53 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.53 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.52 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.52 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.52 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.51 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.51 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.51 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.51 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.49 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.49 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.49 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.48 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.48 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.48 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.48 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.48 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.48 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.47 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.47 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.47 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.47 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.46 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.46 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.45 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.45 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.45 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.44 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.44 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.43 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.42 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.42 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.41 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.4 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.4 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.4 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.37 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.37 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.37 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.36 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.36 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.36 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.35 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.35 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.35 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.35 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.35 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.33 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.32 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.32 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.31 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.3 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.29 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.28 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.27 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.25 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.24 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.23 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.22 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.21 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.21 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.18 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.17 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.15 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.12 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.12 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.11 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.11 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.1 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.09 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.09 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.05 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.02 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.98 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.97 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.97 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.96 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.95 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 98.9 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.88 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.88 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 98.87 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.86 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.86 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 98.84 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.82 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.8 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.78 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.78 | |
| PLN02452 | 365 | phosphoserine transaminase | 98.76 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.76 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.67 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.61 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.6 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 98.58 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.58 | |
| PLN02263 | 470 | serine decarboxylase | 98.55 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.47 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.42 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.41 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.4 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.38 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.36 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 98.31 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.27 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.27 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.23 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.0 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.84 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 97.72 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 97.71 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.35 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 97.34 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 97.26 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 97.18 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.15 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 97.04 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.01 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 96.83 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 96.82 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.52 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 96.04 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 96.03 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 95.8 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 94.36 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 92.72 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 88.4 |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=329.75 Aligned_cols=278 Identities=81% Similarity=1.254 Sum_probs=232.2
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
..++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.|++..+.++.+...+..+.+.+..+++++++
T Consensus 189 ~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~ 268 (468)
T PLN02450 189 NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVY 268 (468)
T ss_pred CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEE
Confidence 34789999999999999999999999999999999999999999998878765555655543211111123468999999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||||.+|++|+|+||++++++.+.+.+.....+..+|++.|.++..+|+++.+...++++.++.++++++.+.+.|+++|
T Consensus 269 S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~g 348 (468)
T PLN02450 269 SLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAG 348 (468)
T ss_pred eccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999987776666666655555788999999999999877455789999999999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.++++|+|+|++++.......+.++.+++..+++++||.+.||..|+...++|+||+++..+++++++++++|++++
T Consensus 349 i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 349 IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFV 428 (468)
T ss_pred CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998655444445556788888888999999999998777899999998668999999999999999
Q ss_pred HHHHHhhhccccccccccccccccccceeEEeecCCCC
Q 044773 249 DSITTTLHNQSNHQSIKNSRRRSFTKWVFRLSFDDPMT 286 (289)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (289)
+.....--+.+.||..|+++|.-.++|+++++|.|--.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (468)
T PLN02450 429 ESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSFHDREP 466 (468)
T ss_pred HhccccccccchhcccccccchhhhccceEEeeccCCc
Confidence 86652222446678889999999999999999988543
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=310.37 Aligned_cols=243 Identities=56% Similarity=1.003 Sum_probs=207.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC-CCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE-VWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~i~i 87 (289)
+.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.|.+..+.++.++..+.+. .+ ..++++++
T Consensus 197 ~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~--~~~~~~~v~vv 274 (496)
T PLN02376 197 NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDI--SEVNVDLIHIV 274 (496)
T ss_pred CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccc--cccCCCeEEEE
Confidence 4579999999999999999999999999999999999999999999988877777788777543100 00 12467789
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||||.||+||+|+||++++++.+.........++.++++.|.+++.+++++.++++++++.++.++++++.+.+.|++.
T Consensus 275 ~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~ 354 (496)
T PLN02376 275 YSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA 354 (496)
T ss_pred EeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998788877776666666688999999999999988777889999999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++.++++|+|+|++++..... ..+.++.+++..++++.||.+.||..|+...++|+||+++..+++++++++++|++
T Consensus 355 gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~ 434 (496)
T PLN02376 355 DIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQD 434 (496)
T ss_pred CCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHH
Confidence 99999999999999999865432 33345567888899888999999999987778999999986688999999999999
Q ss_pred HHHHHHH
Q 044773 247 FVDSITT 253 (289)
Q Consensus 247 ~l~~~~~ 253 (289)
++.+...
T Consensus 435 ~l~~~~~ 441 (496)
T PLN02376 435 FVSKNKN 441 (496)
T ss_pred HHHHhhh
Confidence 9986554
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=300.99 Aligned_cols=226 Identities=28% Similarity=0.500 Sum_probs=198.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++++++++|+++|++|+++||.||+|.++.|++..+.++.+..+ ..++++.+.|
T Consensus 162 ~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~--------~~~~~i~i~s 233 (393)
T COG0436 162 PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAG--------ARDRTITINS 233 (393)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCC--------CcceEEEEec
Confidence 47999999999999999999999999999999999999999999999998876677777743 3588999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.++++|||+||++++++.+.+.+.+... ..+.+.+.|.++..+|+.... ..+.++.++.|++|++.+.+.|.+.
T Consensus 234 ~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~ 312 (393)
T COG0436 234 FSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEI 312 (393)
T ss_pred ccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999976777666654433 234778999999999998754 4667888899999999999999988
Q ss_pred -CCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 -GISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 -g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+.+.. |+|+||+|++++...+ ..+++..|++++||.+.||..||.. +.+++||+++. ++++++++++++
T Consensus 313 ~g~~~~~~p~Ga~Y~~~~i~~~~d------~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl 385 (393)
T COG0436 313 GGLSVVKPPEGAFYLFPKIPELLD------SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRL 385 (393)
T ss_pred CCeeeccCCCeeEEEEeecCCCCC------HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHH
Confidence 699888 8899999999997633 3689999999999999999999995 88999999996 679999999999
Q ss_pred HHHHHHH
Q 044773 245 KAFVDSI 251 (289)
Q Consensus 245 ~~~l~~~ 251 (289)
+++++..
T Consensus 386 ~~~~~~~ 392 (393)
T COG0436 386 ARFLAEY 392 (393)
T ss_pred HHHHHhc
Confidence 9988764
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=300.31 Aligned_cols=243 Identities=60% Similarity=1.057 Sum_probs=208.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
..++|+|+++|||||||.+++++++++|+++|+++++++|+||+|....|++.++.++.++..+.+ ..+..++++++.
T Consensus 198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~--~~~~~~~v~vi~ 275 (447)
T PLN02607 198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARG--YKGVAERVHIVY 275 (447)
T ss_pred CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcC--CCCCcCcEEEEE
Confidence 457899999999999999999999999999999999999999999988787666778777644210 002257899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||||.||++|+|+||+++.++.+...+.....+..+|++.|.+++.+|.+..+.+.++++.++.++++++.+.+.|++.|
T Consensus 276 s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~g 355 (447)
T PLN02607 276 SLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAG 355 (447)
T ss_pred cchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999977777776766666656788999999999999887678899999999999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+++.++++|+|+|+++++.........+.+++..+++++||.+.||..|+...++|+||+++..++++++++++||.+++
T Consensus 356 i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 356 IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFM 435 (447)
T ss_pred CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998654332223445788888888999999999999888899999999668999999999999999
Q ss_pred HHHHH
Q 044773 249 DSITT 253 (289)
Q Consensus 249 ~~~~~ 253 (289)
++..+
T Consensus 436 ~~~~~ 440 (447)
T PLN02607 436 DRRKT 440 (447)
T ss_pred HHHHh
Confidence 87665
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=278.05 Aligned_cols=249 Identities=67% Similarity=1.098 Sum_probs=232.8
Q ss_pred ChHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 1 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.+.+.++|.|+++||+||.|.+++++++..+++++.++|+.+|+||+|++-.|+...+.++.++..+.. ..
T Consensus 216 A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~----~~ 291 (471)
T KOG0256|consen 216 ALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPH----LD 291 (471)
T ss_pred HHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccc----cC
Confidence 35677777889999999999999999999999999999999999999999999999999889999999987541 25
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
.+++.++.|+||-||+||+|+|.|...++.+.....++..++.++++.|..++.+|.+..+.+.++++.+++++.+.+++
T Consensus 292 ~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~ 371 (471)
T KOG0256|consen 292 PDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYI 371 (471)
T ss_pred CCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|+++||.+.+..+|+|+|+++.+......+..+.++++.++++.++.+.||+.|.+..+||+|++|++..++.++.+
T Consensus 372 ~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~a 451 (471)
T KOG0256|consen 372 VEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVA 451 (471)
T ss_pred HhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHH
Confidence 99999999999999999999999999999888999999999999888999999999999999999999998788888889
Q ss_pred HHHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSITT 253 (289)
Q Consensus 241 l~~l~~~l~~~~~ 253 (289)
++|+++++..+..
T Consensus 452 m~Ri~~~~~~~~~ 464 (471)
T KOG0256|consen 452 MRRLKQFLDSQVQ 464 (471)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999995443
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=282.02 Aligned_cols=238 Identities=20% Similarity=0.302 Sum_probs=191.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.++++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|.+..+.++.++.+ .
T Consensus 162 l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~---------~ 232 (433)
T PRK06855 162 LENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG---------D 232 (433)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC---------c
Confidence 3445544457899999999999999999999999999999999999999999998887655667777643 1
Q ss_pred CceEEEecCccccCCCCceEEEEEecC----HHHHHHHH---hc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSND----DTVVAAAT---KM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~----~~~~~~~~---~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
.++++++||||.+++||+|+||+++++ +.+...+. .. ....+++++.|.++..++.++.+ ++++++.++.|
T Consensus 233 ~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~ 311 (433)
T PRK06855 233 VPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRY 311 (433)
T ss_pred CCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHH
Confidence 357999999999999999999999842 22222222 21 12234678999999999998777 88999999999
Q ss_pred HHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccC----CC-----------------hhhHHHHHHHHHHhcCeEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS----NT-----------------FEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~----~~-----------------~~~~~~~~~~ll~~~gi~v 211 (289)
+++++.+.+.|++. |+.+.+|+||||+|+++++.... .. ..+..+++..+++++||.+
T Consensus 312 ~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 391 (433)
T PRK06855 312 EKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICV 391 (433)
T ss_pred HHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEE
Confidence 99999999999887 78888999999999999864200 00 0123467778888999999
Q ss_pred eCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.||..|+.. ..++||+++..+.+++++++++|++++++
T Consensus 392 ~PG~~F~~~-~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 392 VPLSSFCTE-LNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred ecCCcCCCC-CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 999999853 34699999867899999999999999875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=277.71 Aligned_cols=241 Identities=24% Similarity=0.357 Sum_probs=197.7
Q ss_pred HHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++.. .+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++.. ..
T Consensus 156 ~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~--------~~ 227 (405)
T PRK09148 156 ERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG--------AK 227 (405)
T ss_pred HHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC--------cc
Confidence 444432 257899999999999999999999999999999999999999999988776544455554411 23
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++++++||||.+|++|+|+||+++++ .+.+.+.....+ .+++.+.|.++..++.+. +.++++.++.++++++.
T Consensus 228 ~~~i~~~SfSK~~~~pGlR~G~~v~~~-~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~ 303 (405)
T PRK09148 228 DVTVEFTSMSKTFSMAGWRMGFAVGNE-RLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDV 303 (405)
T ss_pred CcEEEEeccccccCCcchheeeeeCCH-HHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999954 455555544332 336778999999999754 56788899999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|+++|+.+..|++|+|+|++++..... .+..+++..+++++||.+.||..|+..+++++||+++ .+++++++
T Consensus 304 l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~~l~~ 379 (405)
T PRK09148 304 LVESFGRAGWDIPPPAASMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQRIRQ 379 (405)
T ss_pred HHHHHHHcCCccCCCCeeEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHH
Confidence 9999999888888899999999998864322 1235688888878899999999997656789999998 58999999
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 044773 240 SMQRLKAFVDSITTTLHNQS 259 (289)
Q Consensus 240 ~l~~l~~~l~~~~~~~~~~~ 259 (289)
++++|.++++....|+|+.-
T Consensus 380 al~~l~~~l~~~~~~~~~~~ 399 (405)
T PRK09148 380 AARNIKRFLSSADETLHNVV 399 (405)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998753
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=261.56 Aligned_cols=233 Identities=21% Similarity=0.323 Sum_probs=204.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
||+++... .+|++++||||||||.+|+.++|.+|.++|++||+.||.||+|+++.+.|+...+++.+-+ +..
T Consensus 150 LE~~~~~~-~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~-------~~a 221 (388)
T COG1168 150 LEKAFVDE-RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSE-------RFA 221 (388)
T ss_pred HHHHHhcC-CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcCh-------hhh
Confidence 56777765 7899999999999999999999999999999999999999999999999877777776644 246
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHH-HHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA-ATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~-~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
++.+.+.|.||+|+++|+++++++++++.+... .+++ .....+|.++..+..++++.+ ..|+.++.+.++.+++
T Consensus 222 ~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~ 298 (388)
T COG1168 222 DNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRD 298 (388)
T ss_pred cceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998887443 3333 234458889999999999988 7899999999999999
Q ss_pred HHHHHHHhc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 159 KLVSGLEKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 159 ~l~~~l~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.+++. ++++..|+|.|.+|+++....-. +.+....++++.+|++.+|..||..+++++|++++. +.+.
T Consensus 299 ~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~-----d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~ 372 (388)
T COG1168 299 YVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLD-----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAI 372 (388)
T ss_pred HHHHHHHhhCCCcEEecCCCceeeeeeccccCCC-----hHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHH
Confidence 999999988 89999999999999999976433 246888899999999999999999999999999996 9999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDSI 251 (289)
Q Consensus 237 l~~~l~~l~~~l~~~ 251 (289)
+++++++|+.+++..
T Consensus 373 L~eal~ri~~al~~~ 387 (388)
T COG1168 373 LEEALERLKRALKKR 387 (388)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=275.35 Aligned_cols=232 Identities=23% Similarity=0.353 Sum_probs=187.9
Q ss_pred HHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. .+++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.+++....++.++.. ..
T Consensus 166 ~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~--------~~ 237 (403)
T PRK08636 166 EKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG--------AK 237 (403)
T ss_pred HHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC--------cc
Confidence 444443 257899999999999999999999999999999999999999999998776655556665521 23
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++++++||||.+|+||+|+||++++++ +.+.+..... ....+++.|.++..++... ..++++.++.++++++.
T Consensus 238 ~~~i~~~S~SK~~~~~GlRiG~iv~~~~-li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 313 (403)
T PRK08636 238 DVAVESYTLSKSYNMAGWRVGFVVGNKK-LVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDV 313 (403)
T ss_pred ccEEEEEecccccCCccceeeeeeCCHH-HHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999654 4444443332 2335677888877776533 56788999999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|++.|+.+..|++|+|+|+++++.... .+..+++..+++++||.+.||..|+..+++++||+++ .+++++++
T Consensus 314 l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~ 389 (403)
T PRK08636 314 LIESFANAGWELQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENENRIRQ 389 (403)
T ss_pred HHHHHHHCCCcccCCCcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCHHHHHH
Confidence 9999999888888999999999999864321 1235688888888999999999998766789999999 58999999
Q ss_pred HHHHHHHHHHH
Q 044773 240 SMQRLKAFVDS 250 (289)
Q Consensus 240 ~l~~l~~~l~~ 250 (289)
++++|+++++.
T Consensus 390 ~~~rl~~~l~~ 400 (403)
T PRK08636 390 AARNIKKFLKE 400 (403)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=274.79 Aligned_cols=222 Identities=23% Similarity=0.287 Sum_probs=181.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++-+ ..+++++++|
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~--------~~~~vi~~~S 246 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEG--------ARECAIEFRS 246 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCC--------cccceEEEec
Confidence 47899999999999999999999999999999999999999999988765543445554411 2357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHH-----------HHHh-c-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVA-----------AATK-M-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~-----------~~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
|||++|++|+|+||++++++.+.. .... . ..+..++.+.|.++..++.... ..++++.++.++++
T Consensus 247 fSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~ 324 (409)
T PRK07590 247 FSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDYYMEN 324 (409)
T ss_pred CccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHHHHHH
Confidence 999999999999999997655431 1111 1 2233477899999988887542 56788999999999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.+.|+++|+++.++++|+|+|++++...+. .+++..+++++||.+.||..|+..+.+++||+++ .++++
T Consensus 325 r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~------~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~ 397 (409)
T PRK07590 325 AKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSS------WDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF-GSREN 397 (409)
T ss_pred HHHHHHHHHhcCCceecCCcceEEEEECCCCCCH------HHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc-CCHHH
Confidence 9999999999898888889999999999864332 4678888888899999999998766789999986 48999
Q ss_pred HHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFV 248 (289)
Q Consensus 237 l~~~l~~l~~~l 248 (289)
+++++++|++++
T Consensus 398 l~~~l~rl~~~~ 409 (409)
T PRK07590 398 VLEAMERIKKAL 409 (409)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=272.69 Aligned_cols=218 Identities=20% Similarity=0.325 Sum_probs=183.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++.+ ..+++++++|
T Consensus 165 ~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 236 (399)
T PRK07681 165 DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG--------AKEVGVEINS 236 (399)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC--------CcccEEEEee
Confidence 47899999999999999999999999999999999999999999998776655556555522 3468899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+..... ...++.+.|.++..++.++ .+++++.++.++++++.+.+.|++.
T Consensus 237 ~SK~~~~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (399)
T PRK07681 237 LSKSYSLAGSRIGYMIGNE-EIVRALTQFKSNTDYGVFLPIQKAACAALRNG---AAFCEKNRGIYQERRDTLVDGFRTF 312 (399)
T ss_pred cccccCCccceeEEEecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999964 44454544332 2347789999999999875 3567888899999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++..|++|+|+|++++...+ ..+++..+++++||.+.||..|+..+++++||+++. +++++++++++|++
T Consensus 313 g~~~~~p~~g~f~~~~l~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 313 GWNVDKPAGSMFVWAEIPKGWT------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred CCcccCCCeeeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 9888889999999999975432 256888888778999999999986667899999994 78999999999987
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=270.73 Aligned_cols=224 Identities=17% Similarity=0.311 Sum_probs=182.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++..+.. ..+++++++|
T Consensus 177 ~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~--------~~~~vi~i~S 248 (405)
T PRK06207 177 AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI--------DPENVITIMG 248 (405)
T ss_pred hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC--------CcCcEEEEec
Confidence 35889999999999999999999999999999999999999999998887655455544411 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||+++++|+|+||+++++ .+.+.+...... ...+.+.|.++..++.++ ..++++..+.++++++.+.+.|++.
T Consensus 249 fSK~~~lpGlRiG~ii~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (405)
T PRK06207 249 PSKTESLSGYRLGVAFGSP-AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP---DGWMKDRIARHQAIRDDLLRVLRGV 324 (405)
T ss_pred chhhccCcccceEEEEcCH-HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999965 444444443322 235668999999999864 2345666677788889999999887
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
++++.+|++|+|+|++++... .+..+++..+++++||.+.||..|+...++++||+++. +++++++++++|++
T Consensus 325 ~~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~ 398 (405)
T PRK06207 325 EGVFVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQ 398 (405)
T ss_pred CCceecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 788888999999999997521 12246888887788999999999986667899999995 88999999999999
Q ss_pred HHHHH
Q 044773 247 FVDSI 251 (289)
Q Consensus 247 ~l~~~ 251 (289)
++++.
T Consensus 399 ~l~~~ 403 (405)
T PRK06207 399 LIERY 403 (405)
T ss_pred HHHHh
Confidence 98764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=270.40 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=183.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. ..++.++.+ ..+++++++|
T Consensus 186 ~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~--------~~~~vi~i~S 256 (413)
T PLN00175 186 SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPG--------MYERTVTMNS 256 (413)
T ss_pred cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCC--------CcCcEEEEec
Confidence 4689999999999999999999999999999999999999999999877543 345555522 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||++++++.+ +.+.... ...+++++.|.++..+|+.. +.++++.++.|+++++.+.+.|++.
T Consensus 257 fSK~~~~~G~RiG~~v~~~~l~-~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (413)
T PLN00175 257 LGKTFSLTGWKIGWAIAPPHLT-WGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEV 332 (413)
T ss_pred chhhccCcchheeeeEeCHHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999965544 4343332 22447889999999999875 5678999999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC---CCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---TEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+++.+|+||+|+|+++.... ..+..+++..+++++||.+.||..|+. .+.+++||+++. +++++++++++|
T Consensus 333 g~~~~~p~g~~f~~~~~~~~~----~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL 407 (413)
T PLN00175 333 GFKVYPSSGTYFVMVDHTPFG----FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERM 407 (413)
T ss_pred CCeecCCCeeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHH
Confidence 999999999999999975311 012356888888889999999999864 235799999995 899999999999
Q ss_pred HHHHH
Q 044773 245 KAFVD 249 (289)
Q Consensus 245 ~~~l~ 249 (289)
+++++
T Consensus 408 ~~~~~ 412 (413)
T PLN00175 408 KTKLK 412 (413)
T ss_pred HHHHh
Confidence 98765
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=265.97 Aligned_cols=232 Identities=22% Similarity=0.381 Sum_probs=188.1
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.+. .
T Consensus 156 l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----------~ 225 (391)
T PRK07309 156 LEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY----------L 225 (391)
T ss_pred HHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh----------c
Confidence 34444443 368999999999999999999999999999999999999999999988766555566555 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.+++++++||||.+|++|+|+||++++++.+........ ....++++.|.++..++.++.+ +....++.++++++.
T Consensus 226 ~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 302 (391)
T PRK07309 226 PDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDY 302 (391)
T ss_pred cCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHH
Confidence 368999999999999999999999997554444333222 2234678999999999987643 245677889999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|++.|+.+.+|++|+|+|++++..... +..+++..+++++||.+.||..|+..+++++||+++. +++++++
T Consensus 303 ~~~~l~~~~~~~~~p~gg~~~~~~l~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~ 377 (391)
T PRK07309 303 IIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQ----DSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKE 377 (391)
T ss_pred HHHHHHHCCCeecCCCeeEEEEEECCCCCCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHH
Confidence 9999999899999999999999998754321 2246777777788999999999987778899999985 7899999
Q ss_pred HHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSI 251 (289)
Q Consensus 240 ~l~~l~~~l~~~ 251 (289)
++++|++++++.
T Consensus 378 ~i~~l~~~~~~~ 389 (391)
T PRK07309 378 AMKRLKEYMEEH 389 (391)
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=269.64 Aligned_cols=221 Identities=19% Similarity=0.320 Sum_probs=175.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC-ccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. ..++.++.+ ..+++++++
T Consensus 164 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~--------~~~~vi~~~ 235 (388)
T PRK07366 164 AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP--------EKSVSIEFF 235 (388)
T ss_pred ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCC--------CcccEEEEe
Confidence 46899999999999999999999999999999999999999999998776543 445555422 235689999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCC--C-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--V-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||||++|++|+|+||++++++ +.+.+........ . +.+.+.+++.+... ++++++.++.++++++.+.+.|+
T Consensus 236 SfSK~~g~~GlRiG~~v~~~~-li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~ 310 (388)
T PRK07366 236 TLSKSYNMGGFRIGFAIGNAQ-LIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALH 310 (388)
T ss_pred ecccccCCcchhheehcCCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999554 4554544433221 2 23445555554433 56789999999999999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++|+.+..|++|+|+|++++..... +..+++..+++++||.+.||..|+..+.+++||+++. +++++++++++|+
T Consensus 311 ~~~~~~~~p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~ 385 (388)
T PRK07366 311 QIGWPVPLPEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIA 385 (388)
T ss_pred HCCCcccCCCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 9888878899999999999864321 1246778888889999999999986667899999985 7999999999998
Q ss_pred HHH
Q 044773 246 AFV 248 (289)
Q Consensus 246 ~~l 248 (289)
+++
T Consensus 386 ~~l 388 (388)
T PRK07366 386 AFL 388 (388)
T ss_pred HhC
Confidence 763
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=266.80 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=177.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+++....++.... +..+++++++|
T Consensus 166 ~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~--------~~~~~~i~~~S 237 (389)
T PRK08068 166 EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTP--------GAKDVGIELYT 237 (389)
T ss_pred ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCC--------CccCCEEEEec
Confidence 3689999999999999999999999999999999999999999998877653334444332 23467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||+++++ .+.+.+....... +.+++.|.++..++.+. .+++++.++.++++++.+.+.|+++
T Consensus 238 ~SK~~g~~GlRiG~~~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~ 313 (389)
T PRK08068 238 LSKTFNMAGWRVAFAVGNE-SVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREI 313 (389)
T ss_pred chhccCCccceeEeEecCH-HHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999954 4555444443322 23345777777777654 4668889999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+.+.+|++|+|+|++++...+ ..+++..+++++||.+.||..|+..+++++||+++. +++++.+++++|+++
T Consensus 314 g~~~~~~~g~~~~~v~~~~~~~------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 386 (389)
T PRK08068 314 GWEVDAPKGSFFAWMPVPKGYT------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL 386 (389)
T ss_pred CCcccCCCeeEEEEEECCCCCC------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 9988899999999999976432 256888888778999999999987667899999985 788999999988763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=267.26 Aligned_cols=223 Identities=21% Similarity=0.419 Sum_probs=183.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++. ..++..+.+ ..+++++++|
T Consensus 153 ~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~~i~~~S 223 (378)
T PRK07682 153 AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKG--------MRERTILISG 223 (378)
T ss_pred cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhccc--------ccCCEEEEec
Confidence 4689999999999999999999999999999999999999999999877543 334444421 3468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+.... ....++++.|.++..+|+++ ..++++.++.++++++.+.+.|+++
T Consensus 224 ~SK~~~~~GlR~G~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 299 (378)
T PRK07682 224 FSKGFAMTGWRLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAG---NDDVIRMRDSYRKRRNFFVTSFNEI 299 (378)
T ss_pred CcccccChhhhhhhhhcCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999654 544443332 22347789999999999875 3457888999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..|++|+|+|+.++... .+..+++..+++++||.+.||..|+..+++++||+++. +.+++++++++|+++
T Consensus 300 ~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 373 (378)
T PRK07682 300 GLTCHVPGGAFYAFPSISSTG-----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRF 373 (378)
T ss_pred CCccCCCCeeEEEEEeccCCC-----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHH
Confidence 999899999999999875321 12256888888788999999999986667899999996 789999999999998
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
++..
T Consensus 374 l~~~ 377 (378)
T PRK07682 374 VENK 377 (378)
T ss_pred Hhhc
Confidence 8653
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=265.52 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=181.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++.. ..+++++++|
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~--------~~~~~i~~~S 234 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG--------AKDVGIEFHS 234 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCC--------cccCEEEEEe
Confidence 47899999999999999999999999999999999999999999988776655556555421 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||+++++ .+.+.+..... ...++.+.|.++..++.+. .+++++.++.++++++.+.+.|++.
T Consensus 235 fSK~~g~~GlRiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 310 (383)
T TIGR03540 235 LSKTYNMTGWRIGMAVGNA-DLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKI 310 (383)
T ss_pred cccccCCccceeeEEeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999964 44444444322 2335678899999999875 5678888999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+.+.++++|+|+|+++++..+. .+++..+++++||.+.||..|+..+++++||+++. +++++.+++++|++
T Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 311 GIDVEKPKATFYVWVPVPEGYTS------AEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred CCEecCCCcceEEEEECCCCCCH------HHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 99999999999999999754322 56888888888999999999986567899999984 78999999998865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=266.70 Aligned_cols=221 Identities=22% Similarity=0.301 Sum_probs=179.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++..+.++.++.+ ..+++++++|
T Consensus 172 ~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~vi~~~S 243 (402)
T TIGR03542 172 PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG--------AKECAIEFRS 243 (402)
T ss_pred CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC--------CcccEEEEec
Confidence 46899999999999999999999999999999999999999999988665433344444411 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHH-------HHHH-Hhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTV-------VAAA-TKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~-------~~~~-~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
|||.+|+||+|+||++++++.+ .... ... .....++.+.|.++..++.+..+ .+.++.++.++++++.+
T Consensus 244 fSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 321 (402)
T TIGR03542 244 FSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENARIL 321 (402)
T ss_pred CccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHHH
Confidence 9999999999999999976544 1222 122 22334778999998888887543 34666778999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|++.|+++.++.+|+|+|++++...+. .+++..+++++||.+.||+.|+..+.+++||+++. ++++++++
T Consensus 322 ~~~L~~~~~~~~~~~~~~f~~v~l~~~~~~------~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~ 394 (402)
T TIGR03542 322 RKALEAAGFKVYGGEHAPYLWVKTPEGISS------WDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVEA 394 (402)
T ss_pred HHHHHhcCceecCCCceeEEEEECCCCCCH------HHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHH
Confidence 999998888888888999999999864332 56888888888999999999987667899999875 89999999
Q ss_pred HHHHHHH
Q 044773 241 MQRLKAF 247 (289)
Q Consensus 241 l~~l~~~ 247 (289)
+++|+++
T Consensus 395 l~~l~~~ 401 (402)
T TIGR03542 395 CERIKEA 401 (402)
T ss_pred HHHHHhh
Confidence 9999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=263.69 Aligned_cols=218 Identities=20% Similarity=0.400 Sum_probs=180.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.++|.+++++|+++|++++++||+||+|.++.+++ ...++.++.. ..+++++++|
T Consensus 161 ~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~--------~~~~vi~~~S 231 (384)
T PRK06348 161 SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAG--------MPERTITFGS 231 (384)
T ss_pred cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCC--------CcCcEEEEec
Confidence 468999999999999999999999999999999999999999999987754 3334444421 2478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||++|++|+|+||+++++ .+.+.+..... ...++++.|.++..++... +.++++.++.++++++.+.+.|++.
T Consensus 232 fSK~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~ 307 (384)
T PRK06348 232 FSKDFAMTGWRIGYVIAPD-YIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESI 307 (384)
T ss_pred chhccCCccccceeeecCH-HHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999964 45555444332 2347889999999999753 6678889999999999999999887
Q ss_pred -CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++++.+|++|+|+|++++. ..+ ..+++..+++++||.+.||..|+..+++++||+++ .+++++++++++|+
T Consensus 308 ~~~~~~~p~gg~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~ 380 (384)
T PRK06348 308 PNLSLHPPKGSIYAFINIKKTGLS------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIEVLEEAFNRIE 380 (384)
T ss_pred CCceeccCCeeEEEEEecccCCCC------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHHHHHHHHHHHH
Confidence 7788899999999999874 222 25688888888899999999998766789999998 48999999999997
Q ss_pred HH
Q 044773 246 AF 247 (289)
Q Consensus 246 ~~ 247 (289)
++
T Consensus 381 ~~ 382 (384)
T PRK06348 381 KM 382 (384)
T ss_pred hh
Confidence 64
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=263.03 Aligned_cols=224 Identities=21% Similarity=0.339 Sum_probs=182.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....+..... +...++++++|
T Consensus 159 ~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 230 (389)
T PRK05957 159 PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIP--------GSGNHTISLYS 230 (389)
T ss_pred cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCC--------CccCcEEEEec
Confidence 4789999999999999999999999999999999999999999998877543333433332 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+...... .+.+.+.|.++..+++++ ..++++.++.++++++.+.+.|++.
T Consensus 231 ~SK~~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~ 306 (389)
T PRK05957 231 LSKAYGFASWRIGYMVIPI-HLLEAIKKIQDTILICPPVVSQYAALGALQVG---KSYCQQHLPEIAQVRQILLKSLGQL 306 (389)
T ss_pred chhhccCccceeEEEecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999965 455544443322 335668999999999875 3346666777899999999999887
Q ss_pred -C-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 -G-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 -g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
+ +.+.++++|+|+|++++...+ +.+++..+++++||.+.||..|+...++++||+++..+++++++++++|.
T Consensus 307 ~~~~~~~~~~gg~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~ 380 (389)
T PRK05957 307 QDRCTLHPANGAFYCFLKVNTDLN------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLV 380 (389)
T ss_pred CCCccccCCCeeEEEEEeCCCCCC------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHH
Confidence 5 377789999999999875433 25788888888899999999998766779999998678999999999999
Q ss_pred HHHHHH
Q 044773 246 AFVDSI 251 (289)
Q Consensus 246 ~~l~~~ 251 (289)
+.+++.
T Consensus 381 ~~~~~~ 386 (389)
T PRK05957 381 QGLKTI 386 (389)
T ss_pred HHHHhh
Confidence 988764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=268.50 Aligned_cols=237 Identities=19% Similarity=0.296 Sum_probs=183.0
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCCC----CCceE
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTEV----WNRVH 85 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d~----~~~~i 85 (289)
++|+++++|||||||.+++.+++++|+++|++++++||+||+|..+.|++ ..+.++..+..++ +. ..+++
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l-----~~~~~~~~~vi 292 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLEL-----PAEYNTDVELV 292 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhh-----cccccCCeEEE
Confidence 68999999999999999999999999999999999999999999987743 3455665543321 11 13689
Q ss_pred EEecCccc-cCCCCceEEEEEe--cCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCc-----hH--HHHHHHHHHHHHH
Q 044773 86 IVYSLSKD-LGLPGFRVGAIYS--NDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDK-----KF--AQNYISENKKRLK 154 (289)
Q Consensus 86 ~i~s~sK~-~g~~G~r~G~i~~--~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~-----~~--~~~~~~~~~~~~~ 154 (289)
+++||||. ++++|+|+||+++ .++.+.+.+.... ...++|++.|.++..++... .+ ..+++++.++.++
T Consensus 293 ~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
T PTZ00377 293 SFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLK 372 (481)
T ss_pred EEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 99999998 5889999999997 2455555444433 33357889999999999642 11 1444556666789
Q ss_pred HHHHHHHHHHHhc-CCceecCCceEEEEEecCcccc--C----CChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEE
Q 044773 155 QRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLS--S----NTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFR 226 (289)
Q Consensus 155 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~--~----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~R 226 (289)
++++.+.+.|+++ |+++..|+||||+|+++..+.. . ....+...++..+++++||.+.||+.|+.. +.+++|
T Consensus 373 ~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~R 452 (481)
T PTZ00377 373 RRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFR 452 (481)
T ss_pred HHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEE
Confidence 9999999999988 8999999999999987642110 0 001112346778888999999999999853 457999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
|+++ .+++++++++++|++++++..+
T Consensus 453 ls~~-~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 453 ITIL-PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred EEEC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 6889999999999999988765
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=263.99 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=177.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.|++....++..+. +..+++++++|
T Consensus 161 ~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 232 (384)
T PRK12414 161 PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHR--------ELAERSVIVSS 232 (384)
T ss_pred cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCc--------CccCcEEEEec
Confidence 4789999999999999999999999999999999999999999999877664444444431 13468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++. .+.+.... ....++.+.|.++..++.++.. ..+.++.++++++.+.+.|++.
T Consensus 233 fSK~~~~pGlRiG~~v~~~~l-~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~ 307 (384)
T PRK12414 233 FGKSYHVTGWRVGYCLAPAEL-MDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGS 307 (384)
T ss_pred ccccccCccceEEEEecCHHH-HHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999997554 44444433 2344788999999999987643 2356788999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+.+++||||+|++++..... ...+++..+++++||.+.||..|+..+ .+++||+++. +++++++++++|.
T Consensus 308 g~~~~~~~gg~~~~~~~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~ 382 (384)
T PRK12414 308 RFELLPSEGSFFMLARFRHFSDE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLC 382 (384)
T ss_pred CCeecCCCcceEEEEcccccCCC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHh
Confidence 98889999999999988752111 123577677778999999999997433 5799999996 8999999999997
Q ss_pred H
Q 044773 246 A 246 (289)
Q Consensus 246 ~ 246 (289)
+
T Consensus 383 ~ 383 (384)
T PRK12414 383 S 383 (384)
T ss_pred h
Confidence 4
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=263.31 Aligned_cols=236 Identities=21% Similarity=0.302 Sum_probs=190.9
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++.. ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++.++.. .
T Consensus 154 l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~--------~ 225 (395)
T PRK08175 154 LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG--------A 225 (395)
T ss_pred HHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC--------c
Confidence 34555432 57899999999999999999999999999999999999999999988776555555554421 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+++++++||||.||+||+|+||+++++ .+.+.+.+... ..+.+++.|.++..++... +.++++.++.++++++
T Consensus 226 ~~~~i~~~S~SK~~g~pGlRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~ 301 (395)
T PRK08175 226 KDVAVEFFTLSKSYNMAGWRIGFMVGNP-ELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRD 301 (395)
T ss_pred ccCEEEEeeccccccCcchhheeeeCCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999954 55555544432 2335677888888888653 6678899999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 159 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
.+.+.|++.|+.+..|++|+|+|++++..... .+..+++..+++++||.+.||..|+..+++++||+++ .+++.+.
T Consensus 302 ~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~~~~ 377 (395)
T PRK08175 302 VLVKGLHEAGWMVEMPKASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRDRIR 377 (395)
T ss_pred HHHHHHHHcCCcccCCCEEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHHHHH
Confidence 99999999998888899999999999865421 1235688888888999999999998766789999998 4899999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSITT 253 (289)
Q Consensus 239 ~~l~~l~~~l~~~~~ 253 (289)
+++++|.+++++..+
T Consensus 378 ~al~~l~~~l~~~~~ 392 (395)
T PRK08175 378 QAIRGIKAMFRADGL 392 (395)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999976543
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=262.93 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=180.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++.+ ..+++++++|
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 236 (385)
T PRK09276 165 KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG--------AKDVGIEFHS 236 (385)
T ss_pred ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC--------CcCCEEEEec
Confidence 46899999999999999999999999999999999999999999988776655556555421 2467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+..... ..+.+.+.|.++..++... ..++++.++.++++++.+.+.|++.
T Consensus 237 ~SK~~g~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (385)
T PRK09276 237 LSKTYNMTGWRIGFAVGNAD-LIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKL 312 (385)
T ss_pred chhhcCCcchhheeeeCCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999654 4444443322 2235668888888888753 6678889999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++.+|++|+|+|++++...+ ..+++..+++++||.+.||..|+..+++++||+++. +++++.+++++|++
T Consensus 313 ~~~~~~~~~~~~~~v~~~~~~~------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 313 GLEVEPPKATFYVWAPVPKGYT------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred CCcccCCCcceEEEEECCCCCC------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 9888889999999999986432 256888888888999999999986667899999984 88999999998864
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=265.66 Aligned_cols=232 Identities=22% Similarity=0.348 Sum_probs=196.1
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++.+ ++|+++++.- |||||.+||.+++++|+++|++|+++||+||+|+.+.+++.+.+++..+ |.
T Consensus 218 le~~~~~~-~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~l---------d~ 287 (459)
T COG1167 218 LEEALAQW-KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKAL---------DA 287 (459)
T ss_pred HHHHHhhc-CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhh---------CC
Confidence 56666666 7999655533 8999999999999999999999999999999999998887777777777 56
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.++|++++||||++. ||+|+||+++|++.+....... .....++.+.|.+++.++.++.+ +++++++++.|+++++.
T Consensus 288 ~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~ 365 (459)
T COG1167 288 PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDA 365 (459)
T ss_pred CCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHH
Confidence 799999999999997 9999999999765554443322 22334788999999999998777 99999999999999999
Q ss_pred HHHHHHhc---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCCCC--CCeEEEEEecCC
Q 044773 160 LVSGLEKA---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHCTE--PGWFRVCFANMS 233 (289)
Q Consensus 160 l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~--~~~~Ris~~~~~ 233 (289)
+.+.|.++ +..+..|.+|+|+|+++++..+. .++...++ ++|+.+.| |..|...+ .+++|++++..+
T Consensus 366 l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~------~~l~~~a~-~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~ 438 (459)
T COG1167 366 LLEALAEYLPELATWTRPEGGLFLWLELPEGIDA------RELLAAAL-EKGVVVTPLGSAFSADGDPRNGLRLSFSSPS 438 (459)
T ss_pred HHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCH------HHHHHHHH-HCCCEEEcCCccccCCCCCCCeEEEEcCCCC
Confidence 99999998 46788999999999999987654 45676666 66999998 88887644 568999998889
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~ 252 (289)
++++++++++|.+++.+..
T Consensus 439 ~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 439 EEEIEEGIKRLAALLREAA 457 (459)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=264.68 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=181.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++.. ..+++++++|
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S 233 (386)
T PRK09082 162 PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE--------LRERAFVVSS 233 (386)
T ss_pred ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC--------ccCcEEEEee
Confidence 46899999999999999999999999999999999999999999988776555556655522 3578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+.... ..+.++.+.|.+++.++... +++.++.++.++++++.+.+.|++.
T Consensus 234 ~SK~~~~~G~RiG~iv~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 309 (386)
T PRK09082 234 FGKTYHVTGWKVGYCVAPA-ALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANS 309 (386)
T ss_pred chhhccchhhhhhhhhCCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999965 4444444332 22347889999999999742 5667888999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++++.++++|+|+|+++++.. . .+..+++..+++++||.+.||+.|+. .+.+++||+++. +++++++++++|+
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~ 384 (386)
T PRK09082 310 RFKLLPCEGTYFQLVDYSAIS-D---LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLC 384 (386)
T ss_pred CCcccCCCeeEEEEEeccccC-C---CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHh
Confidence 999999999999999987521 1 12356888888899999999998863 346799999996 8999999999987
Q ss_pred H
Q 044773 246 A 246 (289)
Q Consensus 246 ~ 246 (289)
+
T Consensus 385 ~ 385 (386)
T PRK09082 385 Q 385 (386)
T ss_pred h
Confidence 5
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=262.13 Aligned_cols=219 Identities=22% Similarity=0.314 Sum_probs=180.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++.++.+ ..+.+++++|
T Consensus 169 ~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 240 (394)
T PRK05942 169 QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG--------AKDIGVEFHT 240 (394)
T ss_pred ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC--------ccccEEEEec
Confidence 57999999999999999999999999999999999999999999988776555455554421 2356788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||+++++ .+.+.+..... ....+++.|.++..+++.. +.++++.++.++++++.+.+.|++.
T Consensus 241 fSK~~~~~GlRiG~i~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (394)
T PRK05942 241 LSKTYNMAGWRVGFVVGNR-HIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGEL 316 (394)
T ss_pred chhccCChhhheeeeecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999954 55555544332 2336778999999999743 5678889999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+.+.++++|+|+|++++...+. .+++..+++++||.+.||..|+..+++++||+++. +.+.+.++++++.++
T Consensus 317 ~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 317 GWNIPPTKATMYLWVPCPVGMGS------TDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA 389 (394)
T ss_pred CCeecCCCeeeEEEEECCCCCCH------HHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 88888899999999999854332 45777778889999999999986667899999984 788899998888653
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=262.10 Aligned_cols=229 Identities=21% Similarity=0.351 Sum_probs=185.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+ +..+++++++|
T Consensus 189 ~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~---------~~~~~vi~~~S 259 (430)
T PLN00145 189 ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVF---------GEVAPVLTLGS 259 (430)
T ss_pred cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhh---------cccCcEEEEec
Confidence 468999999999999999999999999999999999999999999987766555565554 23468999999
Q ss_pred CccccCCCCceEEEEEec-CHHHH------HHHHhccccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN-DDTVV------AAATKMSSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~-~~~~~------~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|++||+|+||++++ ++.+. +.+....... .++.+.|.++..++.... ++++++.++.++++++.+.
T Consensus 260 ~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 337 (430)
T PLN00145 260 ISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICY 337 (430)
T ss_pred cccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999984 23222 2233333322 356799999999998632 6778999999999999999
Q ss_pred HHHHhc-CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|+++ |+.+ ..|++++|+|++++...-. ...+..+++..+++++||.+.||..|+. ++|+||+++. +++++++
T Consensus 338 ~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~ 413 (430)
T PLN00145 338 EKIKEIKCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLED 413 (430)
T ss_pred HHHhcCCCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHH
Confidence 999987 7775 4799999999998742100 0112356888899999999999999985 6899999994 8999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
++++|+++++...+
T Consensus 414 al~rl~~~~~~~~~ 427 (430)
T PLN00145 414 GLERLKSFCLRHAK 427 (430)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988765
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=264.37 Aligned_cols=229 Identities=22% Similarity=0.353 Sum_probs=182.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.++. ...++++++|
T Consensus 203 ~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~---------~~~~vi~l~S 273 (462)
T PLN02187 203 ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFA---------SIVPVLTLAG 273 (462)
T ss_pred CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhc---------cCCcEEEEec
Confidence 4688999999999999999999999999999999999999999999888665555665552 2256999999
Q ss_pred CccccCCCCceEEEEEecC-HHH---HHHHHhccc---cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND-DTV---VAAATKMSS---FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~-~~~---~~~~~~~~~---~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|+++|+|+||+++++ +.+ .+.+..... .. .++.+.|.++..+++... .+++++.++.++++++.+.
T Consensus 274 fSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~ 351 (462)
T PLN02187 274 ISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVC 351 (462)
T ss_pred chhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999853 322 223333222 21 247799999999997532 6789999999999999999
Q ss_pred HHHHhcCC-c-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKAGI-S-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~g~-~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|++++. . +..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+. ++|+||+++. +++.+++
T Consensus 352 ~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~iRis~~~-~~e~l~~ 427 (462)
T PLN02187 352 DRLKDIPCVVCPKKPESCTYLLTKLELSLMD-NIKDDIDFCVKLAREENLVFLPGDALGL--KNWMRITIGV-EAHMLED 427 (462)
T ss_pred HHHhhCCCCcCCCCCCEeEEEEeecChhhCC-CCCCHHHHHHHHHhhCCEEEECccccCC--CCeEEEEeCC-CHHHHHH
Confidence 99998743 3 24688999999988632111 0112346777888899999999999974 6899999995 7999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
++++|.++++...+
T Consensus 428 al~rL~~~l~~~~~ 441 (462)
T PLN02187 428 ALERLKGFCTRHAK 441 (462)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987765
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=261.11 Aligned_cols=227 Identities=23% Similarity=0.412 Sum_probs=187.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++++++||+||||.+++.+++++|+++|+++ ++++|+||+|.++.|++....++.++.++ ..+++++++
T Consensus 165 ~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~-------~~~~vi~~~ 237 (402)
T PRK06107 165 PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE-------LRDRVLVTN 237 (402)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC-------ccCCEEEEe
Confidence 4688999999999999999999999999999998 99999999999887876666676666442 347899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.||++|+|+||++++++ +.+.+..... ...++.+.|.++..+|.++ ..++++.++.++++++.+.+.|++
T Consensus 238 S~SK~~~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~ 313 (402)
T PRK06107 238 GVSKTYAMTGWRIGYAAGPAD-LIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNA 313 (402)
T ss_pred ccchhhcCcccceeeeecCHH-HHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999654 4555544432 2447889999999999764 567889999999999999999988
Q ss_pred c-CCceecCCceEEEEEecCcccc-----CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 167 A-GISCLKSNAGLFCWVDMRHLLS-----SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 167 ~-g~~~~~~~~g~~~~i~~~~~~~-----~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
+ |+.+.+|++|+|+|++++...+ .....+..+++..+++++||.+.||..|+. .+++||+++. ++++++++
T Consensus 314 ~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~ 390 (402)
T PRK06107 314 IPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEA 390 (402)
T ss_pred CCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHH
Confidence 7 8888899999999999853211 000113356788888899999999999975 5799999995 89999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|++++++
T Consensus 391 l~~l~~~l~~ 400 (402)
T PRK06107 391 CARIERAVAA 400 (402)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=267.97 Aligned_cols=229 Identities=20% Similarity=0.325 Sum_probs=181.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++.++.+ ...+++++|
T Consensus 280 ~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~---------~~~vi~~~S 350 (517)
T PRK13355 280 SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP---------DLFCVTFSG 350 (517)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC---------CCeEEEEec
Confidence 57899999999999999999999999999999999999999999998887655667766632 235778899
Q ss_pred CccccCCCCceEEEEEec--CHH---HHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN--DDT---VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~--~~~---~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||+++++|+|+||++++ ++. +.+.+..... ..+.+.+.|.++..+|.......+++++.++.+ ++++++.+.
T Consensus 351 ~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~-~~r~~l~~~ 429 (517)
T PRK13355 351 LSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVY-EQRELVYNA 429 (517)
T ss_pred chhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999964 222 2222222222 244778999999999975432356666655544 557999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|+++ |+++.+|+|+||+|++++..... ..+..+++..+++++||.+.||..|+...+++|||+++ .++++++++++
T Consensus 430 L~~~~g~~~~~p~g~fy~~~~l~~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~-~~~~~l~~a~~ 506 (517)
T PRK13355 430 LNAIPGISAVKPKAAFYIFPKIDVKKFN--IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL-PRLEDLEDAMD 506 (517)
T ss_pred HhcCCCcccCCCCeeeEEEeecCcccCC--CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-CCHHHHHHHHH
Confidence 9988 89999999999999998742100 11234677788889999999999998767889999997 58999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|+++++..
T Consensus 507 rl~~~~~~~ 515 (517)
T PRK13355 507 RLADFFSYY 515 (517)
T ss_pred HHHHHHHHh
Confidence 999998754
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=257.86 Aligned_cols=230 Identities=22% Similarity=0.362 Sum_probs=187.5
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+.++++|+|++|+||||||.++++++|++|+++|++||+++|.||+|..+.+++....+++.+ | +++++++-
T Consensus 168 ~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl-P-------gm~ertit 239 (420)
T KOG0257|consen 168 KITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL-P-------GMYERTIT 239 (420)
T ss_pred hccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC-C-------chhheEEE
Confidence 345789999999999999999999999999999999999999999999999998877788777 5 58999999
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHH-----HHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFA-----QNYISENKKRLKQRHRKL 160 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l 160 (289)
++|+||++|++|||+||+++++..+....... ...+.++++.|.+.+.++....-+ ..+..++.+.|+++++.|
T Consensus 240 vgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil 319 (420)
T KOG0257|consen 240 VGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDIL 319 (420)
T ss_pred eccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999544444333222 222347778888888887754310 144666999999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccC---C---ChhhHHHHHHHHHHhcCeEEeCCCCCCCCC-----CCeEEEEE
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSS---N---TFEAEMELWKKIVYDVKLNISPGSSCHCTE-----PGWFRVCF 229 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~---~---~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----~~~~Ris~ 229 (289)
.+.|.++|+++..|+|++|+|++++..... + ...++..++.-++++.|+.+.|++.|+..+ .+++|+++
T Consensus 320 ~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~ 399 (420)
T KOG0257|consen 320 AKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCF 399 (420)
T ss_pred HHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999821111 0 112335688889999999999999999744 35789999
Q ss_pred ecCCHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLK 245 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~ 245 (289)
.. +.+.++.+.++|+
T Consensus 400 ~k-~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 400 CK-ADETLRKAIERLK 414 (420)
T ss_pred Hh-hHHHHHHHHHHHh
Confidence 75 7889999999987
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=260.61 Aligned_cols=228 Identities=23% Similarity=0.392 Sum_probs=183.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+.+....++..+. ...++++++|
T Consensus 176 ~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~~i~~~S 246 (412)
T PTZ00433 176 DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFD---------TTVPRVILGG 246 (412)
T ss_pred cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhcc---------CCCceEEEcc
Confidence 3689999999999999999999999999999999999999999998877654445555552 2345789999
Q ss_pred CccccCCCCceEEEEEe--cC---HHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYS--ND---DTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~--~~---~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||.+|++|+|+||+++ |+ +.+.+.+..... ...++++.|.++..++.+. . +.++++.++.++++++.+.+.
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~r~~l~~~ 324 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEGAMVLYNH 324 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 21 234444444332 2357889999999999864 3 678899999999999999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|++. |+.+..|++|+|+|++++...-. ...+..+++..+++++||.+.||..|+. ++++||+++. .+++++++++
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~al~ 400 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVE 400 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHH
Confidence 9886 78888999999999998742100 0012256888888778999999999974 5799999985 7899999999
Q ss_pred HHHHHHHHHH
Q 044773 243 RLKAFVDSIT 252 (289)
Q Consensus 243 ~l~~~l~~~~ 252 (289)
+|.++++...
T Consensus 401 ~l~~~~~~~~ 410 (412)
T PTZ00433 401 RIKAFCERHK 410 (412)
T ss_pred HHHHHHHHhc
Confidence 9999987654
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=259.43 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=182.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++.++. ...++++++|
T Consensus 167 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S 237 (401)
T TIGR01264 167 EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLS---------STVPILSCGG 237 (401)
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcC---------CCCcEEEEcc
Confidence 3579999999999999999999999999999999999999999999877665455665552 2246899999
Q ss_pred CccccCCCCceEEEEEecCH-----HHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDD-----TVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~-----~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||+|+++|+|+||++++++ .+.+.+.... ....++++.|.++..++.+. . ++++++.++.++++++.+.+.
T Consensus 238 fSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~r~~l~~~ 315 (401)
T TIGR01264 238 LAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT-P-QEYFDGTLSVLESNAMLCYGA 315 (401)
T ss_pred CcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999742 2233333332 23447889999999999763 2 678899999999999999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|+++ |+.+..|++|+|+|++++...-. ...+..+++..+++++||.+.||..|+. ++++||+++. ++++++++++
T Consensus 316 L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~ 391 (401)
T TIGR01264 316 LAAVPGLRPVMPSGAMYMMVGIEMEHFP-EFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTV-PVVMMEEACS 391 (401)
T ss_pred HHhCCCCcccCCCeeeEEEEEecccccC-CCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcC-CHHHHHHHHH
Confidence 9988 77778899999999998642000 0112356888888888999999999863 6899999985 7899999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|.+++++
T Consensus 392 rl~~~~~~ 399 (401)
T TIGR01264 392 RIQEFCER 399 (401)
T ss_pred HHHHHHhc
Confidence 99998864
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=259.33 Aligned_cols=224 Identities=25% Similarity=0.388 Sum_probs=180.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++. +..+++++++|
T Consensus 158 ~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 229 (387)
T PRK08912 158 PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLP--------GMRERTVKIGS 229 (387)
T ss_pred ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCC--------CccCceEEEee
Confidence 4689999999999999999999999999999999999999999998877654444554442 12468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++. .+.+...... ...++..|.++..++... .+++++.++.++++++.+.+.|++.
T Consensus 230 ~SK~~g~~GlRiG~~~~~~~~-~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK08912 230 AGKIFSLTGWKVGFVCAAPPL-LRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRI 305 (387)
T ss_pred chhhccCcCceeEEEecCHHH-HHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999996544 4444333222 335667788887777643 5567888999999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+++.++++|+|+|++++..... .+..+++..+++++||.+.||..|+. ...+++||+++. +++++++++++|+
T Consensus 306 g~~~~~~~g~~~l~~~l~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~ 381 (387)
T PRK08912 306 GFPVLPSQGTYFLTVDLAPLGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLA 381 (387)
T ss_pred CCcccCCCcceEEEecccccCCC---CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHH
Confidence 99999999999999998752111 12356888888888999999999864 236899999996 7899999999999
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 382 ~~l~ 385 (387)
T PRK08912 382 AARR 385 (387)
T ss_pred HHHh
Confidence 8775
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=258.48 Aligned_cols=221 Identities=22% Similarity=0.444 Sum_probs=182.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.++ +....++.++.. ..+++++++
T Consensus 157 ~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~ 228 (382)
T PRK06108 157 PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--------PDDRIIFVN 228 (382)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC--------CcCCEEEEe
Confidence 46899999999999999999999999999999999999999999988775 333344444422 346899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.+|++|+|+||++++++ +.+.+..... ...++.+.|.++..++..+ .+++++.+++++++++.+.+.|++
T Consensus 229 S~SK~~g~~G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 304 (382)
T PRK06108 229 SFSKNWAMTGWRLGWLVAPPA-LGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRA 304 (382)
T ss_pred echhhccCcccceeeeeCCHH-HHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999654 4444433322 2336788999999999875 456788889999999999999988
Q ss_pred c-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 167 A-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
+ |+++..|++|+|+|++++...+ ..+++..+++++||.+.||..|++.+++++||+++. +++++++++++|+
T Consensus 305 ~~~~~~~~p~~g~~~~~~l~~~~~------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~ 377 (382)
T PRK06108 305 LPGVEVAKPDGAMYAFFRIPGVTD------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLR 377 (382)
T ss_pred CCCCcccCCCeeEEEEEeCCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 7 8888899999999999875432 256888888889999999999976667899999997 8999999999999
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 378 ~~l~ 381 (382)
T PRK06108 378 RFLA 381 (382)
T ss_pred HHHh
Confidence 8764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=264.78 Aligned_cols=239 Identities=21% Similarity=0.318 Sum_probs=183.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++|+++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+ +..+.++.++..+.++ .+...++++++|
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~--~~~~~~vi~l~S 348 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGY--GEKDISLVSFQS 348 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhcc--ccCCceEEEEec
Confidence 6899999999999999999999999999999999999999999999885 4556677666432100 001236899999
Q ss_pred Ccccc-CCCCceEEEEEec--CHHHHHHHHhccc-cCCCChHHHHHHHHHhCC-----chHHHHH---HHHHHHHHHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYSN--DDTVVAAATKMSS-FGLVSSQTQYLLSALLSD-----KKFAQNY---ISENKKRLKQRH 157 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~~--~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~-----~~~~~~~---~~~~~~~~~~~~ 157 (289)
|||.+ |++|+|+||++++ ++.+.+.+.+... ..+.+.+.|.++..++.. ..+ +.+ ..++++.|++++
T Consensus 349 ~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~ 427 (534)
T PLN02231 349 VSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRA 427 (534)
T ss_pred cCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHH
Confidence 99976 7899999999874 4556555544333 233566888888888864 234 443 445688999999
Q ss_pred HHHHHHHHhc-CCceecCCceEEEEEecCccccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEE
Q 044773 158 RKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCF 229 (289)
Q Consensus 158 ~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~ 229 (289)
+.+.+.|+++ |+.+.+|+||||+|+++.-+... ....+...++..+++++||.+.||+.|+. .+..++|+++
T Consensus 428 ~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~ 507 (534)
T PLN02231 428 KTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI 507 (534)
T ss_pred HHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe
Confidence 9999999988 89999999999999665321110 00011234678888899999999999986 3456799999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+ .+++++++++++|.+++++..+
T Consensus 508 ~-~~~e~l~eal~RL~~~~~~~~~ 530 (534)
T PLN02231 508 L-PQEDKIPAIVSRLTEFHKSFMD 530 (534)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHH
Confidence 7 5899999999999999988765
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=259.30 Aligned_cols=222 Identities=18% Similarity=0.306 Sum_probs=174.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. ...+........ +.+..+++++++
T Consensus 165 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~~~ 241 (396)
T PRK09147 165 ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL---GRDDFKRLVVFH 241 (396)
T ss_pred hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc---CccccccEEEEe
Confidence 3789999999999999999999999999999999999999999999877653 222222111100 002357899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++++|+|+||++++++ +.+.+..... ...++++.|.++...+.. .+++++.++.++++++.+.+.|++
T Consensus 242 S~SK~~~~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~ 316 (396)
T PRK09147 242 SLSKRSNVPGLRSGFVAGDAA-LLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAP 316 (396)
T ss_pred ccccccCCccceeeeecCCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999654 4444443332 234677888887777754 456888999999999999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEEecCCHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~~Ris~~~~~~e~l~~~ 240 (289)
. +.+..|++|+|+|++++ .+ ..+++..+++++||.+.||..|+. .+.+++||+++. ++++++++
T Consensus 317 ~-~~~~~p~~g~f~~~~~~--~~------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~ 386 (396)
T PRK09147 317 V-LDVQLPDAGFYLWAKVP--GD------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEA 386 (396)
T ss_pred h-cCCCCCCeeEEEEEECC--CC------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHH
Confidence 5 67778999999999987 11 246888888888999999999863 235799999985 78999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|++++.
T Consensus 387 l~rl~~~~~ 395 (396)
T PRK09147 387 AERIVDFCR 395 (396)
T ss_pred HHHHHHHhc
Confidence 999998764
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=257.73 Aligned_cols=224 Identities=26% Similarity=0.446 Sum_probs=183.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+.+. ..++.++. |..+++++++|
T Consensus 160 ~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~--------~~~~~vi~~~s 230 (387)
T PRK07683 160 EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFP--------EMREKTIVING 230 (387)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhcc--------CCcCCeEEEee
Confidence 4689999999999999999999999999999999999999999998866543 34555442 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|+||+|+||++++++ +.+.+..... ...++++.|.++..++..+ ..+.++.++.++++++.+.+.|.+.
T Consensus 231 ~SK~~~~pGlRiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (387)
T PRK07683 231 LSKSHSMTGWRIGFLFAPSY-LAKHILKVHQYNVTCASSISQYAALEALTAG---KDDAKMMRHQYKKRRDYVYNRLISM 306 (387)
T ss_pred ccccccCccceeEEEEcCHH-HHHHHHHHHHhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999654 4444333222 2335778999999999875 3457888899999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
++.+.++++|+|+|+.++... .+..+++..+++++||.+.||+.|+..+++++||+++. +++++.+++++|.++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~ 380 (387)
T PRK07683 307 GLDVEKPTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAF 380 (387)
T ss_pred CCcccCCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 888899999999999887521 11245777778889999999999987667899999996 899999999999998
Q ss_pred HHHHH
Q 044773 248 VDSIT 252 (289)
Q Consensus 248 l~~~~ 252 (289)
+++..
T Consensus 381 l~~~~ 385 (387)
T PRK07683 381 LQQKA 385 (387)
T ss_pred HHhhc
Confidence 87544
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=260.25 Aligned_cols=222 Identities=18% Similarity=0.371 Sum_probs=185.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.+. ..+++++++|
T Consensus 165 ~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~----------~~~~~i~~~s 234 (391)
T PRK08361 165 KRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY----------APDNTILANS 234 (391)
T ss_pred cccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhc----------CCCCEEEEec
Confidence 468899999999999999999999999999999999999999999887655444455444 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++.+. .+..... .+.++++.|.++..+++++.+ .+++++.++.++++++.+.+.|++.
T Consensus 235 ~SK~~~~~GlRiG~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~ 312 (391)
T PRK08361 235 FSKTFAMTGWRLGFVIAPEQVIK-DMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEM 312 (391)
T ss_pred CchhcCCcHhhhhhhccCHHHHH-HHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999655444 3333322 244778999999999988765 5678999999999999999999987
Q ss_pred -CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++.+.+|++|+|+|++++. ..+ ..+++..+++++||.+.||..|+..+++++||+++. +++++++++++|+
T Consensus 313 ~~~~~~~p~g~~~~~~~l~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~ 385 (391)
T PRK08361 313 PHIKVFEPKGAFYVFANIDETGMS------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERME 385 (391)
T ss_pred CCCeecCCCEEEEEEEECCCCCCC------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 8888999999999999974 222 256788888788999999999987667899999995 7889999999999
Q ss_pred HHHHH
Q 044773 246 AFVDS 250 (289)
Q Consensus 246 ~~l~~ 250 (289)
+++++
T Consensus 386 ~~l~~ 390 (391)
T PRK08361 386 KALEE 390 (391)
T ss_pred HHHhc
Confidence 98764
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=258.29 Aligned_cols=229 Identities=24% Similarity=0.369 Sum_probs=177.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++..+ +..+++++++|
T Consensus 169 ~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~---------~~~~~vi~~~S 239 (409)
T PLN00143 169 ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF---------ASIVPVITLGS 239 (409)
T ss_pred cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh---------cccCcEEEEcc
Confidence 468899999999999999999999999999999999999999999987765443444444 23468999999
Q ss_pred CccccCCCCceEEEEEec-CHHHH------HHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN-DDTVV------AAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~-~~~~~------~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|+++|+|+||++++ ++.+. ..+..... ...++.+.|.++..++.+.. ..++++.++.++++++.+.
T Consensus 240 fSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 317 (409)
T PLN00143 240 ISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCY 317 (409)
T ss_pred chhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999994 33222 22222221 22257799999999997632 5567888888999999999
Q ss_pred HHHHhcCC-ce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKAGI-SC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~g~-~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|.+++. .+ ..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+. ++++||+++. +++++++
T Consensus 318 ~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRi~~~~-~~~~l~~ 393 (409)
T PLN00143 318 DKLKEIPCIMCPQKAEGAFFALVKLNLLLLE-DIEDDMEFCLKLAKEESLIILPGVTVGL--KNWLRITFAV-EQSSLED 393 (409)
T ss_pred HHHhcCCCCCCCCCCCeeEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEEcC-CHHHHHH
Confidence 99988743 32 4688999999999752100 0112346777787889999999999964 6899999994 7999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
++++|+++++....
T Consensus 394 al~rl~~~l~~~~~ 407 (409)
T PLN00143 394 GLGRLKSFCGRHAK 407 (409)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876543
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=261.78 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=179.0
Q ss_pred HHHhhhCCCccEEEEe-CCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNFITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~-~p~NPtG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++. +++|+++++ |||||||.+++.+++++|+++|+++ +++||+||+|.++.+.+. .+.... .
T Consensus 205 ~~~~~--~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~~----------~ 270 (431)
T PRK15481 205 ERALA--QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIPQ----------T 270 (431)
T ss_pred HHHHh--cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCcC----------C
Confidence 44443 368888887 9999999999999999999999999 999999999998755322 222111 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+++++++||||++| +|+|+||++++++. .+.+... .. ..++|.+.|.++..+|+++.+ .+++++.++.++++++
T Consensus 271 ~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~-~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~ 347 (431)
T PRK15481 271 TQRWALIRSVSKALG-PDLRLAFVASDSAT-SARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQ 347 (431)
T ss_pred CCCEEEEeeeccccC-CCceeEEEeCCHHH-HHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHH
Confidence 368999999999999 99999999996544 4434332 22 234788999999999999877 8889999999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHH
Q 044773 159 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTL 237 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l 237 (289)
.+.+.|++.|+.+..|++|+|+|++++.. ..+++..+. ++||.+.||..|+.. ..+++||+++..+++++
T Consensus 348 ~~~~~L~~~~~~~~~p~gg~f~~~~l~~~--------~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i 418 (431)
T PRK15481 348 KLARALQQYGIAIPSPGDGLNLWLPLDTD--------SQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEI 418 (431)
T ss_pred HHHHHHHHcCCccccCCCeEEEEEECCCC--------HHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHH
Confidence 99999999888887899999999999741 135777765 679999999999753 24689999987789999
Q ss_pred HHHHHHHHHHH
Q 044773 238 KLSMQRLKAFV 248 (289)
Q Consensus 238 ~~~l~~l~~~l 248 (289)
++++++|++++
T Consensus 419 ~~~~~~l~~~~ 429 (431)
T PRK15481 419 NRLAADLHQAL 429 (431)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=256.45 Aligned_cols=228 Identities=22% Similarity=0.345 Sum_probs=182.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....++..+ +..+++++++|
T Consensus 168 ~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~---------~~~~~vi~~~S 238 (409)
T PLN02656 168 QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF---------GSIVPVLTLGS 238 (409)
T ss_pred cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh---------cccCcEEEEcc
Confidence 468899999999999999999999999999999999999999999988876544555444 24468999999
Q ss_pred CccccCCCCceEEEEEecC-------HHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND-------DTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~-------~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|||.|+++|+|+||+++++ +.+.+.+..... ...++.+.|.++..++++.. +.++++.++.++++++.+.
T Consensus 239 fSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~~~~ 316 (409)
T PLN02656 239 LSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSSDICC 316 (409)
T ss_pred cchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999953 345555444332 33467899999999998632 5678899999999999999
Q ss_pred HHHHhc-CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|+++ ++. +..|+||+|+|++++..... ...+..+++..+++++||.+.||+.|+. ++++||+++. +++++++
T Consensus 317 ~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~-~~e~l~e 392 (409)
T PLN02656 317 DRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA-DPSSLEE 392 (409)
T ss_pred HHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC-CHHHHHH
Confidence 999887 333 35789999999998642100 0011235666777789999999999974 6899999995 8999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
++++|+++++...
T Consensus 393 al~rl~~~~~~~~ 405 (409)
T PLN02656 393 ALGRIKSFYLRHS 405 (409)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=252.13 Aligned_cols=217 Identities=23% Similarity=0.335 Sum_probs=180.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++.+. .+++++++|
T Consensus 152 ~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~-----------~~~~I~~~s 219 (373)
T PRK07324 152 PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL-----------YEKGISTNS 219 (373)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc-----------cCCEEEEec
Confidence 5789999999999999999999999999999999999999999998866432 3344332 357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++ +.+.+.+...... .+.+.+.|.++..++... +.++++.++.++++++.+.+.|++.
T Consensus 220 ~SK~~~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~ 295 (373)
T PRK07324 220 MSKTYSLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKE 295 (373)
T ss_pred chhhcCCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999995 5566655554432 346778898888888753 6678889999999999999999887
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
++.+..|++|++.|+.++...+ ..+++..+++++||.+.||..|+. ++++||+++. +++.+.+++++|++
T Consensus 296 ~~~~~~~p~gg~~~~i~~~~~~~------~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~ 366 (373)
T PRK07324 296 PRVSYVKPKAVSTSFVKLDVDMP------SEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSE 366 (373)
T ss_pred CCceEECCCceEEEEEEeCCCCC------HHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHH
Confidence 7888899999998888875322 257889988899999999999975 5799999985 79999999999999
Q ss_pred HHHHH
Q 044773 247 FVDSI 251 (289)
Q Consensus 247 ~l~~~ 251 (289)
++++.
T Consensus 367 ~l~~~ 371 (373)
T PRK07324 367 FLREF 371 (373)
T ss_pred HHHhc
Confidence 98753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=254.56 Aligned_cols=226 Identities=24% Similarity=0.409 Sum_probs=183.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++.++. ...++++++|
T Consensus 168 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S 238 (403)
T TIGR01265 168 EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFA---------SIVPVLSLGG 238 (403)
T ss_pred cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhc---------cCCcEEEEee
Confidence 4689999999999999999999999999999999999999999999887765555666662 3357999999
Q ss_pred CccccCCCCceEEEEEecC--HH----HHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND--DT----VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~--~~----~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
|||.|++||+|+||+++++ +. +.+.+..... ...++.+.|.++..++.+.. +.++++.++.++++++.+.+
T Consensus 239 ~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~ 316 (403)
T TIGR01265 239 ISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYE 316 (403)
T ss_pred cccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999853 22 2233333322 33478899999999997632 67889999999999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|+++ |+.+..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+. ++++||+++. +++.+++++
T Consensus 317 ~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l 392 (403)
T TIGR01265 317 ELKDIPGLVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFGL--PNWVRITITV-PESMLEEAC 392 (403)
T ss_pred HHhcCCCceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEecC-CHHHHHHHH
Confidence 99987 78777899999999998753210 0113356888888889999999999973 6899999995 788999999
Q ss_pred HHHHHHHHH
Q 044773 242 QRLKAFVDS 250 (289)
Q Consensus 242 ~~l~~~l~~ 250 (289)
++|++++++
T Consensus 393 ~~l~~~~~~ 401 (403)
T TIGR01265 393 SRIKEFCER 401 (403)
T ss_pred HHHHHHHHh
Confidence 999998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=254.97 Aligned_cols=220 Identities=19% Similarity=0.320 Sum_probs=173.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. ...+......+. +.+..+++++++
T Consensus 164 ~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vi~i~ 240 (393)
T TIGR03538 164 RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQL---GRDDFRRCLVFH 240 (393)
T ss_pred hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccc---cccccccEEEEe
Confidence 3689999999999999999999999999999999999999999998876532 223322221110 002457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++++|+|+||++++++ +.+.+..... ...++++.|.++...+.. ++++++.++.++++++.+.+.|++
T Consensus 241 S~SK~~~~~GlRvG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~ 315 (393)
T TIGR03538 241 SLSKRSNLPGLRSGFVAGDAE-ILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQ 315 (393)
T ss_pred cchhhcCCcccceEEEecCHH-HHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999654 4444443332 233677888888777754 456888899999999999999987
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEEecCCHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~~Ris~~~~~~e~l~~~ 240 (289)
. +.+..|++|+|+|++++ .+ ..+++..+++++||.+.||+.|+. .+.+++||+++. ++++++++
T Consensus 316 ~-~~~~~p~gg~f~~~~~~--~~------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~ 385 (393)
T TIGR03538 316 V-LDLELPDAGFYLWPKVP--GD------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEA 385 (393)
T ss_pred h-CcccCCCeeEEEEEECC--CC------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHH
Confidence 5 56678999999999987 11 246888888889999999999863 235799999985 78999999
Q ss_pred HHHHHHH
Q 044773 241 MQRLKAF 247 (289)
Q Consensus 241 l~~l~~~ 247 (289)
+++|+++
T Consensus 386 l~~l~~~ 392 (393)
T TIGR03538 386 AERIRSF 392 (393)
T ss_pred HHHHHHh
Confidence 9999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=261.73 Aligned_cols=229 Identities=22% Similarity=0.362 Sum_probs=177.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++++|+|+++|||||||.+++.+++++|+++|++ ++++||+||+|..+.. .+.++.+. ..+++++
T Consensus 239 ~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~----------~~~~~I~ 305 (527)
T PRK09275 239 DPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAV----------LPYNTIL 305 (527)
T ss_pred CCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHh----------CCCCEEE
Confidence 3689999999999999999999999999999965 5999999999998643 33454444 2368999
Q ss_pred EecCccccCCCCceEEEEEecCHHHHH-HH-----------------------------------Hhc--cccCCCChHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVA-AA-----------------------------------TKM--SSFGLVSSQT 128 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~-~~-----------------------------------~~~--~~~~~~~~~~ 128 (289)
++||||+||++|+|+||++++++.+.+ .+ ... ....+.+.+.
T Consensus 306 v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~ 385 (527)
T PRK09275 306 VYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQ 385 (527)
T ss_pred EeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHH
Confidence 999999999999999999998762211 11 111 2234466777
Q ss_pred HHHH-----HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCcccc---CCC-------h
Q 044773 129 QYLL-----SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLS---SNT-------F 193 (289)
Q Consensus 129 q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~---~~~-------~ 193 (289)
|.++ .+++... +.+.++.++.+++|++.+.+.|. .++...+|+|+||+|++++.... ... .
T Consensus 386 Q~a~al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~ 461 (527)
T PRK09275 386 QVQMALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKN 461 (527)
T ss_pred HHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhcc
Confidence 7763 3445543 56788899999999999988883 23444679999999999975321 000 1
Q ss_pred hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 194 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 194 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.+..+++..|++++||++.||..|+. +++++|||+++.+++++.++.++|.++++++....
T Consensus 462 ~~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~~ 522 (527)
T PRK09275 462 YSPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYEEY 522 (527)
T ss_pred CCHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999999999999986 46789999997789999999999999999887644
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=254.02 Aligned_cols=229 Identities=20% Similarity=0.327 Sum_probs=177.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+. ...++++++|
T Consensus 167 ~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~vi~~~S 237 (404)
T PRK09265 167 PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLA---------PDLLCVTFNG 237 (404)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcC---------CCceEEEEec
Confidence 4689999999999999999999999999999999999999999998877665555665552 2246899999
Q ss_pred CccccCCCCceEEEEEec-CHH----HHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSN-DDT----VVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~-~~~----~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||++|++|+|+||++++ +.. +.+.+.... ....+|.+.|.++..++...+....+++. .+.++++++.+.+.
T Consensus 238 ~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~ 316 (404)
T PRK09265 238 LSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWEL 316 (404)
T ss_pred chhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999973 332 222222221 22347789999999999764432333333 34577788999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|+++ |+++.+|++|+|+|++++..... ..+..+.+..++.++||.+.||..|+...++++||+++ .++++++++++
T Consensus 317 L~~~~~~~~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~-~~~e~l~~~l~ 393 (404)
T PRK09265 317 LNAIPGVSCVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL-PRVDDLEEAIG 393 (404)
T ss_pred HhcCCCCcccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-CCHHHHHHHHH
Confidence 9887 88889999999999998753210 01123455566778899999999997666789999997 58999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|+++++..
T Consensus 394 rl~~~l~~~ 402 (404)
T PRK09265 394 RIGRFLSGY 402 (404)
T ss_pred HHHHHHHHh
Confidence 999988754
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=249.27 Aligned_cols=211 Identities=17% Similarity=0.271 Sum_probs=165.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+...+.+ ..+++++++|
T Consensus 121 ~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~--~~~~~~~~--------~~~~vi~~~S 190 (332)
T PRK06425 121 YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA--EEDVLLNR--------SYGNVIIGRS 190 (332)
T ss_pred cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc--hhHHHHhc--------cCCCEEEEee
Confidence 3789999999999999999999999999999999999999999998865432 24444432 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||++|++|+|+||+++++ .+.+.+......+..+.+.+ .++..... +.+.++.++.++++++++.+.|++.|+
T Consensus 191 fSK~~~l~GlRiGy~v~~~-~li~~l~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~ 264 (332)
T PRK06425 191 LTKILGIPSLRIGYIATDD-YNMKISRKITEPWSVCDPAI----DFIRSIDL-DYVAKHSLDIMENERSYLINNLEAMGF 264 (332)
T ss_pred cHHhcCCchhhheeeecCH-HHHHHHHHcCCCCccCHHHH----HHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999965 45555555444443443332 23333333 556778899999999999999999888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.+..+.+|.|+|++++ +. .++++.++ ++||.+.||..|+..+++++||+++ ++++.+.++++|++++
T Consensus 265 ~~~~~~~g~f~~~~~~---~~------~~~~~~l~-~~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 265 RAAGDPSANFITFMIP---DA------HDFYSYLL-KNGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred EECCCCCceEEEEEcC---CH------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 8765556778999876 11 45777777 5699999999997655689999998 4789999999988764
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=253.56 Aligned_cols=224 Identities=26% Similarity=0.418 Sum_probs=184.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++.++.+ ..+++++++|
T Consensus 161 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~S 232 (397)
T PRK07568 161 PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEG--------LEDRVIIIDS 232 (397)
T ss_pred ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCC--------CcCCEEEEec
Confidence 47899999999999999999999999999999999999999999998776655556555521 3578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|||.+|++|+|+||++++++.+.+.+... ....+.+.+.|.++..++... +.++++.++.++++++.+.+.|+++
T Consensus 233 ~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 309 (397)
T PRK07568 233 VSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIP 309 (397)
T ss_pred chhhccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999765555544332 222447889999999999864 5678889999999999999999887
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCeEEEEEecCCHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYD-----VKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~ 239 (289)
++.+..|+||+|+|++++.. +..+++..++++ +||.+.||..|+.. +++++||+++. +++++++
T Consensus 310 ~~~~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~ 381 (397)
T PRK07568 310 GVVCEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKR 381 (397)
T ss_pred CceecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHH
Confidence 78888899999999998742 124577777754 69999999998532 34799999984 7899999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
++++|.+++++..
T Consensus 382 ~~~~l~~~l~~~~ 394 (397)
T PRK07568 382 AMEILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=253.41 Aligned_cols=222 Identities=21% Similarity=0.352 Sum_probs=179.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+....++.++. +..+++++++|
T Consensus 158 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S 229 (387)
T PRK07777 158 PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLP--------GMRERTVTISS 229 (387)
T ss_pred cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCC--------CCcCcEEEEee
Confidence 4689999999999999999999999999999999999999999998877654444444431 13578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||++++++ +.+.+..... ....+++.|.++..++... +.++++.++.++++++.+.+.|++.
T Consensus 230 ~SK~~g~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 305 (387)
T PRK07777 230 AAKTFNVTGWKIGWACGPAP-LIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEA 305 (387)
T ss_pred chhhccCcCceeEEEecCHH-HHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999654 4444443332 2336778888888888764 4567888899999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC---CCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT---EPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
++++.++++|+|+|++++.... .+..+++..|++++||.+.||..|+.. .++++||+++. +++++++++++|
T Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l 380 (387)
T PRK07777 306 GFEVHDSAGTYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRL 380 (387)
T ss_pred CCCccCCCcceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 9898999999999998763111 123578999988899999999988742 25689999986 899999999999
Q ss_pred HHHH
Q 044773 245 KAFV 248 (289)
Q Consensus 245 ~~~l 248 (289)
+++.
T Consensus 381 ~~~~ 384 (387)
T PRK07777 381 RALR 384 (387)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=252.74 Aligned_cols=219 Identities=21% Similarity=0.369 Sum_probs=177.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++ ...++.. ..+++++++|
T Consensus 164 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~~~~~~~-----------~~~~vi~~~S 231 (387)
T PRK08960 164 ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV-DAASVLE-----------VDDDAFVLNS 231 (387)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCChhh-----------ccCCEEEEee
Confidence 457889999999999999999999999999999999999999999876643 2334332 2357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+..... ..++|.+.|.++..++.+. . ..++++.++.++++++.+.+.|+++
T Consensus 232 ~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~ 308 (387)
T PRK08960 232 FSKYFGMTGWRLGWLVAPPA-AVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALREL 308 (387)
T ss_pred cccccCCcccEEEEEEcCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999654 4444444332 2346789999988888753 3 6788999999999999999999988
Q ss_pred CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+ ..|++|+|+|+++++.. .+..+++..+++++||.+.||+.|+.. ..+++||+++. +.+++.+++++|+
T Consensus 309 ~~~~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~ 382 (387)
T PRK08960 309 GFGIAVEPQGAFYLYADISAFG-----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIA 382 (387)
T ss_pred CCcCCcCCCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 8765 46889999999997521 112468888888889999999999763 35799999995 7899999999998
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 383 ~~~~ 386 (387)
T PRK08960 383 RGLR 386 (387)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=252.78 Aligned_cols=224 Identities=23% Similarity=0.335 Sum_probs=179.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. ..++..+ +...++++++|
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~---------~~~~~vi~~~S 234 (398)
T PRK08363 165 EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSL---------TKDVPVIVMNG 234 (398)
T ss_pred cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHc---------CcCCcEEEEec
Confidence 4689999999999999999999999999999999999999999998877543 3344444 23457999999
Q ss_pred CccccCCCCceEEEEEe--cCHHHHHHHHhcc----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYS--NDDTVVAAATKMS----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~--~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|||.++++|+|+||+++ +++.+........ .....|.+.|.++..++.+. .+++++.++.++++++.+.+.
T Consensus 235 fSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~ 311 (398)
T PRK08363 235 LSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKR 311 (398)
T ss_pred chhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 4433333222211 12347889999999998753 667888899999999999999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
|.++ ++.+..|++|+|+|++++.... .+..+++..+++++||.+.||..|+..+++++||+++ .++++++++++
T Consensus 312 L~~~~~~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l~ 386 (398)
T PRK08363 312 LNEIPGISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-PPVEILEEAMD 386 (398)
T ss_pred HhcCCCCEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHH
Confidence 9887 7888889999999998875211 0124566677778999999999998666789999998 48899999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|++++.+.
T Consensus 387 ~l~~~~~~~ 395 (398)
T PRK08363 387 RFEEFMRER 395 (398)
T ss_pred HHHHHHHHh
Confidence 999988663
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=254.42 Aligned_cols=216 Identities=35% Similarity=0.578 Sum_probs=181.9
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.++...+.+....+ +...++++++||
T Consensus 148 ~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--------~~~~~vi~~~S~ 219 (363)
T PF00155_consen 148 RPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLL--------DEDDNVIVVGSL 219 (363)
T ss_dssp TEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHH--------TTTSTEEEEEES
T ss_pred ccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccc--------cccccceeeeec
Confidence 578999999999999999999999999999999999999999999877644332222222 234559999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||.+|++|+|+||+++ ++.+.+.+......+..+++.|.++..++.+.....+++++.++.++++++++.+.|++.|+.
T Consensus 220 SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~ 298 (363)
T PF00155_consen 220 SKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGIT 298 (363)
T ss_dssp TTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cccccccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999 566666666665555458899999999998876445689999999999999999999999999
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+.++++|+++|+.+... +..++++.|++++||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 299 ~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 299 VLPPEAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EEHHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eeeccCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 99999999999998864 3357999999888999999999987 88999999557999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=253.18 Aligned_cols=224 Identities=18% Similarity=0.244 Sum_probs=178.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++ ...++.++. +..+++++++|
T Consensus 178 ~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~--------~~~~~~I~i~S 248 (410)
T PRK06290 178 EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVP--------GAKEVGVEIHS 248 (410)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCC--------CccccEEEEee
Confidence 368999999999999999999999999999999999999999999887654 334554442 13467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+...... .+.+.+.|.++..++.+.. ++++.++.++++++.+.+.|++.
T Consensus 249 fSK~~g~~GlRiG~ii~~~~-l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~ 323 (410)
T PRK06290 249 LSKAYNMTGWRLAFVVGNEL-IVKAFATVKDNNDSGQFIAIQKAGIYALDHPE----ITEKIREKYSRRLDKLVKILNEV 323 (410)
T ss_pred chhhcCCchhheEeEEeCHH-HHHHHHHHHhccccCCcHHHHHHHHHHhhCcH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999654 44444443332 2244588999999998754 46788899999999999999999
Q ss_pred CCceecCCceEEEEEecCccccCC-ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--CCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSN-TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l 244 (289)
|+.+.+|++|+|+|++++...... ...+..+++..|+++.++.+.||..|+ +++||+++. .++++.++.++.|
T Consensus 324 g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l 399 (410)
T PRK06290 324 GFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEI 399 (410)
T ss_pred CCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHH
Confidence 999899999999999998643210 012345799999988888889988764 599999974 3778899999999
Q ss_pred HHHHHHH
Q 044773 245 KAFVDSI 251 (289)
Q Consensus 245 ~~~l~~~ 251 (289)
++.|...
T Consensus 400 ~~~~~~~ 406 (410)
T PRK06290 400 KRRLSDV 406 (410)
T ss_pred HHHHhhc
Confidence 8887654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=257.96 Aligned_cols=227 Identities=21% Similarity=0.339 Sum_probs=174.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++++|+|+++|||||||.+++.+++++|+++|+++ +++||+||+|..+.. .+.++.+. ..+++++
T Consensus 238 ~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~----------~~~~vI~ 304 (521)
T TIGR03801 238 DPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAE----------LPYNTIG 304 (521)
T ss_pred CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhh----------CCCCEEE
Confidence 35899999999999999999999999999999986 999999999998643 33454444 2368999
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHH------------H------------------------Hhc--cccCCCChHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAA------------A------------------------TKM--SSFGLVSSQT 128 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~------------~------------------------~~~--~~~~~~~~~~ 128 (289)
++||||+||++|+|+||++++++.+.+. + ... ....+.+.+.
T Consensus 305 v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~ 384 (521)
T TIGR03801 305 VYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQ 384 (521)
T ss_pred EEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHH
Confidence 9999999999999999999976532110 1 111 1223355666
Q ss_pred HH--H---HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC---CC-------h
Q 044773 129 QY--L---LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS---NT-------F 193 (289)
Q Consensus 129 q~--~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~---~~-------~ 193 (289)
|. + +.+++... +.+.++.++.+++|++.+.+.|. ..+...+++|+||+|++++..... .. .
T Consensus 385 Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~Lg-~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~ 460 (521)
T TIGR03801 385 QVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGLG-LPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKN 460 (521)
T ss_pred HHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhcC-CCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhcc
Confidence 65 3 44455432 56788899999999999999882 223346789999999999853210 00 0
Q ss_pred hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 194 EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 194 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+..+++..|++++||.+.||..|+. +++++|||+++.+++++.++.++|.++++++..
T Consensus 461 ~~~~~~~~~L~~e~gV~v~PG~~Fg~-~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 461 YSPVDVLFRLAEETGIVLLPGGGFGG-PEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhcCC-CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13468999999999999999999986 467899999877999999999999999987754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=247.64 Aligned_cols=213 Identities=23% Similarity=0.364 Sum_probs=172.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|++++++||||||.+++.+++++|+++|+++|+++|+||+|..+.++. ...++... ..+++++++|
T Consensus 135 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~----------~~~~~i~~~s 203 (350)
T TIGR03537 135 EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEV----------GIENVLAFHS 203 (350)
T ss_pred hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhc----------CcCCEEEEee
Confidence 368999999999999999999999999999999999999999999875543 33344433 2368999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++ +.+.+.+...... . ..+++.|.++..++.. +.++++.++.++++++.+.+.|++.
T Consensus 204 ~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~r~~l~~~~~~~~~~l~~~ 278 (350)
T TIGR03537 204 LSKRSGMTGYRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWSD----DNHVLERRKIFKRKRDLFIEFFNKV 278 (350)
T ss_pred cccccCCccccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999985 4555555444322 2 2344677777676665 3456778899999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++.++++|+|+|++++...+ ..+++..|+ ++||.+.||..|+...++++||+++ .++++++++++++++
T Consensus 279 g~~~~~~~g~~~~~~~~~~~~~------~~~l~~~L~-~~gv~v~~g~~f~~~~~~~~Ri~~~-~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 279 GLEYLYPDATFYLWVKVPSGID------AKDYALRLL-ENGIVVAPGENFGSGEEGYVRVALV-PTLEECEEALRLWER 349 (350)
T ss_pred CCcccCCCeEEEEEEECCCCCC------HHHHHHHHH-HCCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHhc
Confidence 9988999999999999986432 246888877 5699999999998666789999998 588999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=247.46 Aligned_cols=213 Identities=22% Similarity=0.391 Sum_probs=174.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++.. .+....+ +..+++++++|
T Consensus 140 ~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~--------~~~~~vi~~~S 210 (354)
T PRK06358 140 EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET-ISMINYL--------ENFKNLIIIRA 210 (354)
T ss_pred cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccc-hhHHHhc--------cCCCCEEEEEe
Confidence 36899999999999999999999999999999999999999999988765542 3333332 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||.+|++|+|+||++++++.+.+.+......+..+.+.|.++..++.+ ..++++.++.++++++++.+.|++. |
T Consensus 211 ~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~ 286 (354)
T PRK06358 211 FTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDD----KEYIKKTIQWIKEEKDFLYNGLSEFKG 286 (354)
T ss_pred chhhccCcchhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976666666666554555788999999999976 3457888888999999999999887 7
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.+++++ |+|+++++. .+++..++ ++||.+.||..|+..+++++||+++ ++++.+.+++.|.+++
T Consensus 287 ~~~~~~~g~-f~~~~~~~~---------~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 287 IKVYKPSVN-FIFFKLEKP---------IDLRKELL-KKGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred cEEcCCcce-EEEEEcCch---------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 777888765 888988732 35777777 5699999999996556789999997 4788999998887764
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=248.67 Aligned_cols=226 Identities=27% Similarity=0.504 Sum_probs=186.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++||+||||.+++.+++++|+++|+++++++|+||+|..+.+++..+.++.++.. +..+++++++|
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~s 235 (393)
T PRK05764 163 PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSP-------ELRDRTITVNG 235 (393)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCC-------CCcCCEEEEec
Confidence 46899999999999999999999999999999999999999999988776555556665533 34578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+..... ...++++.|.++..++.. . .+++++.++.++++++.+.+.|+++
T Consensus 236 ~SK~~~~~G~RiG~i~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (393)
T PRK05764 236 FSKAYAMTGWRLGYAAGPK-ELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--P-QDEVEEMRQAFEERRDLMVDGLNEI 311 (393)
T ss_pred CcccccCccceeEEEecCH-HHHHHHHHHHhhcccCCChHHHHHHHHHHcC--C-hHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999864 44444443332 335788999999999974 2 5678888999999999999999998
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+.+..|++|+++|++++....... .+..++...+++++||.+.||..|+. ++++||+++. +++++++++++|.+
T Consensus 312 ~g~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~ 387 (393)
T PRK05764 312 PGLECPKPEGAFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIER 387 (393)
T ss_pred CCCcccCCCcceEEEEeccccccccc-CCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHH
Confidence 8998999999999999886432211 12356888888889999999999975 7899999985 89999999999999
Q ss_pred HHHH
Q 044773 247 FVDS 250 (289)
Q Consensus 247 ~l~~ 250 (289)
++++
T Consensus 388 ~~~~ 391 (393)
T PRK05764 388 FLES 391 (393)
T ss_pred HHHh
Confidence 8864
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=248.44 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=168.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+++++|||||||.+++.+++++|+++|+++|++||+||+|.++.++ ....++....... +.+..+++++++|
T Consensus 154 ~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~-~~~~s~~~~~~~~---~~~~~~~vi~~~S 229 (374)
T PRK05839 154 QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYEN-TPPPSLLEASILV---GNESFKNVLVINS 229 (374)
T ss_pred ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccC-CCCCCHhhhhccc---CccccCcEEEEec
Confidence 36899999999999999999999999999999999999999999987433 2334443321100 0024478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.||++|+|+||++++ +.+.+.+..... ....+.+.|.++..++.. ++++++.++.++++++.+.+.|
T Consensus 230 fSK~~~~~GlRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l--- 301 (374)
T PRK05839 230 ISKRSSAPGLRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL--- 301 (374)
T ss_pred cccccCCccceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc---
Confidence 999999999999999996 455555544432 234677888888877765 4457778888999988887766
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
++. .|++|+|+|++++. . .+++..+++++||.+.||..|+.. .++++||+++. +++++.+++++|+
T Consensus 302 ~~~--~p~gg~fi~~~~~~---~------~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~ 369 (374)
T PRK05839 302 GIT--IPPATFYVWLPVDN---D------EEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIK 369 (374)
T ss_pred CCC--CCCeeEEEEEeCCC---h------HHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 343 78899999999862 1 458888887799999999988753 36899999985 7999999999999
Q ss_pred HHHH
Q 044773 246 AFVD 249 (289)
Q Consensus 246 ~~l~ 249 (289)
++++
T Consensus 370 ~~l~ 373 (374)
T PRK05839 370 TYLE 373 (374)
T ss_pred HHhh
Confidence 8875
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=248.65 Aligned_cols=214 Identities=23% Similarity=0.332 Sum_probs=170.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhh-hhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI-LKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. .+.... .. .+..+++++++
T Consensus 147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~------~~~~~~~i~~~ 219 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP-VSILDPRVC------GGDHTGLLAVH 219 (364)
T ss_pred ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCC-Ccccccccc------CCccceEEEEe
Confidence 46899999999999999999999999999999999999999999987665432 221110 00 01347899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.+|++|+|+||++++++. .+.+.... ....++++.|.++..++.+ .++.++.++.++++++.+.+.|++
T Consensus 220 S~SK~~~~~GlRiG~i~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~ 294 (364)
T PRK07865 220 SLSKQSNLAGYRAGFVAGDPAL-VAELLEVRKHAGMMVPAPVQAAMVAALGD----DAHVREQRERYARRRAVLRPALEA 294 (364)
T ss_pred echhccCCCceeeEEEecCHHH-HHHHHHHHHhcCCCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996544 44443322 2234788999999999986 345678888999999999999999
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
.|+.+..+++|+|+|+.+... ..+++..+ .++||.+.||..|+...++++||+++. +++++++++++|+
T Consensus 295 ~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 295 AGFRVDHSEAGLYLWATRGED--------CWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred cCCcccCCCccEEEEEeCCCC--------HHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 898888899999999987421 12455555 578999999999886667899999985 7899999999985
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=248.78 Aligned_cols=222 Identities=23% Similarity=0.386 Sum_probs=176.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. ..+...+ .+++++++|
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~-----------~~~vi~~~S 229 (388)
T PRK07337 162 ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL-----------GDDVITINS 229 (388)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc-----------cCCEEEEEe
Confidence 4789999999999999999999999999999999999999999998766543 2333322 256899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-c-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-S-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||++++++ +.+.+.... . ..+.+.+.|.++..++.+.. .++.++.++.++++++.+.+.|++.
T Consensus 230 ~SK~~~~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~ 306 (388)
T PRK07337 230 FSKYFNMTGWRLGWLVVPEA-LVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYERRRAEFKRRRDFIVPALESL 306 (388)
T ss_pred chhhcCCchhheeeeecCHH-HHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999654 444443332 2 23467889999988887644 2345778999999999999999998
Q ss_pred CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+ ..|++|+|+|++++..... ...+..+++..+++++||.+.||..|+.. +.+++||+++. +++++++++++|.
T Consensus 307 ~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~ 384 (388)
T PRK07337 307 GFKVPVMPDGAFYVYADCRGVAHP-AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLG 384 (388)
T ss_pred CCccccCCCeeEEEEEecccccCC-CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 8765 4688999999999753110 11223567888888899999999999753 46899999996 7999999999998
Q ss_pred HHH
Q 044773 246 AFV 248 (289)
Q Consensus 246 ~~l 248 (289)
+++
T Consensus 385 ~~l 387 (388)
T PRK07337 385 KLF 387 (388)
T ss_pred HHh
Confidence 764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=247.12 Aligned_cols=225 Identities=19% Similarity=0.278 Sum_probs=178.8
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. .+++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++....+..... +..+
T Consensus 157 ~~~~~--~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~--------~~~~ 226 (386)
T PRK07550 157 EALIT--PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADP--------DWDD 226 (386)
T ss_pred HHHhc--ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCC--------Cccc
Confidence 44444 3688999999999999999999999999999999999999999998755433222332211 2346
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
++++++||||.+|++|+|+||++++++.+......... ..+++.+.|.++..++.. + +++.++.++.++++++.+.
T Consensus 227 ~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~ 303 (386)
T PRK07550 227 TLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN--L-ADWRAGNRAEIARRRDAFR 303 (386)
T ss_pred cEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999965544443333322 234678999999999975 3 7788888999999999999
Q ss_pred HHHHhc-CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|.++ ++.+ .+.+|+|+|++++. ..+ ..+++..+++++||.+.||..|+..+++++||+++..+++++++
T Consensus 304 ~~L~~~~~~~~-~~~g~~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~ 376 (386)
T PRK07550 304 AVFARLPGWEL-LASGAYFAYVRHPFPDRP------SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGE 376 (386)
T ss_pred HHHHhCCCcee-CCCceEEEEecCCCCCCC------HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHH
Confidence 999986 6654 46789999999875 222 25688888888999999999998666789999998768999999
Q ss_pred HHHHHHHH
Q 044773 240 SMQRLKAF 247 (289)
Q Consensus 240 ~l~~l~~~ 247 (289)
++++|.++
T Consensus 377 ~~~~l~~~ 384 (386)
T PRK07550 377 LVERLRAF 384 (386)
T ss_pred HHHHHHhh
Confidence 99999876
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=249.44 Aligned_cols=222 Identities=18% Similarity=0.291 Sum_probs=171.9
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|... +... ......+ ...+++++++
T Consensus 177 ~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~---~~~~~~~-------~~~~~vI~~~ 245 (416)
T PRK09440 177 DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGI---IFSEATP-------LWNPNIILCM 245 (416)
T ss_pred CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCc---chhhcCc-------cccCCeEEEe
Confidence 457899999999999999999999999999999999999999999743 1111 1111111 1247899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISE-NKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 165 (289)
||||. +++|+|+||+++++ .+.+.+..... ...+|.+.|.++..++.++.+ ..+..+ .++.|+++++.+.+.|.
T Consensus 246 SfSK~-~~pGlRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~ 322 (416)
T PRK09440 246 SLSKL-GLPGVRCGIVIADE-EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLR 322 (416)
T ss_pred ccccc-CCCcceEEEEeCCH-HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 88999999999965 44444444332 234688999999999998877 555554 68889999999999987
Q ss_pred hc----CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------CCCeEEEEEecCC
Q 044773 166 KA----GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-------EPGWFRVCFANMS 233 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-------~~~~~Ris~~~~~ 233 (289)
+. ++.+..|++|+|+|++++. ..+ ..++...+ .++||.+.||+.|+.. ..+++||+++. +
T Consensus 323 ~~l~~~~~~~~~p~gg~fiw~~~~~~~~~------~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~ 394 (416)
T PRK09440 323 RYLPDEPCLIHKPEGAIFLWLWFKDLPIT------TEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-D 394 (416)
T ss_pred HhcccCCeEEecCCCceEEEEECCCCCCC------HHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecC-C
Confidence 64 3566789999999999986 222 24566665 5789999999998642 13589999985 7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~ 252 (289)
++++++++++|++++++..
T Consensus 395 ~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 395 DEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987643
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=248.22 Aligned_cols=211 Identities=18% Similarity=0.294 Sum_probs=168.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..++++++
T Consensus 193 ~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~--------~~~~vI~~ 264 (423)
T PLN02397 193 DGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVE--------DGHEILVA 264 (423)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHh--------cCCcEEEE
Confidence 4678889999999999999999999999999999999999999999977541 2233333322 23579999
Q ss_pred ecCccccCCCCceEEEEE--ecCHHHH----HHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHH---HHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIY--SNDDTVV----AAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNY---ISENKKRLKQR 156 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~--~~~~~~~----~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 156 (289)
+||||+++++|+|+||++ +++..+. +.+.... ...+++.+.|.+++.++.++.+.+.+ +++.++.++++
T Consensus 265 ~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~r 344 (423)
T PLN02397 265 QSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISM 344 (423)
T ss_pred EECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999995 4343332 2232322 23336678999999999886543333 77889999999
Q ss_pred HHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 157 HRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 157 ~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
++.+.+.|+++| +.+..|+||||+|++++ .+++..|++++||.+.++ + ||+++..
T Consensus 345 r~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~-----------~~~~~~Ll~~~~V~v~~~--------~--Ri~~~~~ 403 (423)
T PLN02397 345 RQKLYDALEARGSPGDWSHITKQIGMFSFTGLN-----------KEQVDRMTKEYHIYMTRD--------G--RISMAGL 403 (423)
T ss_pred HHHHHHHHHhcCCCCCCCcccCCceEEEecCCC-----------HHHHHHHHHhCCEEECCC--------C--eEEEeeC
Confidence 999999999987 78888999999999875 248899999999999732 2 9999767
Q ss_pred CHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~ 249 (289)
+++.+++++++|+++++
T Consensus 404 ~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 404 SSKNVPYLADAIHAVVT 420 (423)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=265.01 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=178.9
Q ss_pred ccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC--ccChhhhhhccccccCCCCCceEEEe
Q 044773 12 VKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 12 ~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++|+++||| ||||.+++.+++++|+++|++++++||+||+|.++.|++.. ..++.+..... ...+...++++++
T Consensus 829 ~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~--~~~sks~nVIvL~ 906 (1082)
T PLN02672 829 KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRL--KSSNPSFAVALLG 906 (1082)
T ss_pred CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHh--ccccCCceEEEEe
Confidence 4578999996 99999999999999999999999999999999988886542 11222222110 0000124799999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALL-----SDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
||||.++++|+|+||++++++.+.+.+.........++..|.++..++ +.+.+ .+++++.++.++++++++.+.
T Consensus 907 SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e~ 985 (1082)
T PLN02672 907 GLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKET 985 (1082)
T ss_pred CcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877666666555433334445555555444 24455 678889999999999999999
Q ss_pred HHhcCCceecCCceEEEEEecCcccc------CC-----ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLS------SN-----TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~------~~-----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
|+++|+++.+|+||||+|++++.... .. ...+..+++..|++++||.+.||..|+. ++|+||+++.
T Consensus 986 L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~- 1062 (1082)
T PLN02672 986 LEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFAL- 1062 (1082)
T ss_pred HHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecC-
Confidence 99999999999999999998753211 00 0123467999999889999999988874 6799999995
Q ss_pred CHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~ 249 (289)
+++++++++++|+++++
T Consensus 1063 ~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1063 EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999999998765
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=244.22 Aligned_cols=221 Identities=20% Similarity=0.232 Sum_probs=173.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-----cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-----KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-----~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
+..++++++|||||||.+++.+++++|+++|++ ++++||+||+|.++.+++....++...+. +..+++
T Consensus 145 ~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~-------~~~~~v 217 (388)
T PRK08637 145 KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALA-------NLHSNI 217 (388)
T ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhh-------cccccc
Confidence 345567889999999999999999999999875 89999999999998776654444332221 133454
Q ss_pred --EEEecCccccCCCCceEEEEEecC-----HHHHHHHHh-c-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 85 --HIVYSLSKDLGLPGFRVGAIYSND-----DTVVAAATK-M-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 85 --i~i~s~sK~~g~~G~r~G~i~~~~-----~~~~~~~~~-~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
++++|+||.+++||+|+||+++++ +.+.+.+.. . ...+.+|.+.|.++..+++++.+ ..++++.+.
T Consensus 218 i~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~ 296 (388)
T PRK08637 218 LAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQ 296 (388)
T ss_pred eEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHH
Confidence 456799999999999999999753 454444432 1 12345788999999999998776 777888888
Q ss_pred HHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++++++.+.+.|++. ++.+.+|++|+|+|++++. .+..+++..+++++||.+.+. +++++||
T Consensus 297 ~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~~~~~------~~~~iRi 363 (388)
T PRK08637 297 ILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIGTIAL------NETDLRI 363 (388)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceEEEec------cCCceEE
Confidence 9999999999999765 5778889999999999863 123578888887889988742 2568999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++..+.+++++++++|++++++.
T Consensus 364 ~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 364 AFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred EeecCCHHHHHHHHHHHHHHHHhc
Confidence 998778999999999999998753
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=247.07 Aligned_cols=218 Identities=16% Similarity=0.248 Sum_probs=168.3
Q ss_pred HHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~d 79 (289)
++++++. ++.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~-------- 238 (404)
T PTZ00376 167 LEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE-------- 238 (404)
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh--------
Confidence 4444432 3467778899999999999999999999999999999999999998876431 1223333321
Q ss_pred CCCceEEEecCccccCCCCceEEEEE---ecCHHHHH---HHHhc--cccCCCChHHHHHHHHHhCCchHHH---HHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIY---SNDDTVVA---AATKM--SSFGLVSSQTQYLLSALLSDKKFAQ---NYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~---~~~~~~~~---~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~---~~~~~ 148 (289)
..+++++++||||.++++|+|+||++ ++++.+.. .+... ......+++.|.++..++.++.+.+ +++++
T Consensus 239 ~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 318 (404)
T PTZ00376 239 RGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKE 318 (404)
T ss_pred cCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33589999999999999999999994 44432222 22221 2233356799999999999865422 44667
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 149 NKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
.++.++++++.+.+.|++++ +.+..|+||+|+|++++ .+++..|++++||.+.|| +
T Consensus 319 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------~~~~~~L~~~~~v~v~p~--------~- 378 (404)
T PTZ00376 319 MSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------KEQVERLIEKYHIYLLDN--------G- 378 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC-----------HHHHHHHHHhCCEeecCC--------C-
Confidence 77899999999999999874 45668999999999874 358889998999999997 1
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
||+++..++++++.++++|++++.
T Consensus 379 -Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 379 -RISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred -eEEEeccCHHhHHHHHHHHHHHHh
Confidence 999975799999999999998865
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=242.04 Aligned_cols=214 Identities=25% Similarity=0.355 Sum_probs=169.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++|+++||+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. .+. +.++. .....+++++++|
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~--~~~~~---~~~~~~~vi~~~S 214 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRP-VSI--LDPRV---CGGDHTGLLAVHS 214 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC-ccc--eeccc---CCCccccEEEEec
Confidence 36899999999999999999999999999999999999999999987665432 221 11100 0012467999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+.... ....++.+.|.++..++.+ ..+.+..++.++++++.+.+.|++.
T Consensus 215 ~SK~~~~~G~R~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~ 289 (357)
T TIGR03539 215 LSKRSNLAGYRAGFVAGDP-ALVAELLTVRKHAGLMVPAPVQAAMVAALGD----DGHVAEQKARYAARRAQLKPALEKA 289 (357)
T ss_pred cccccCCCceeEEEEecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999864 4444443332 2234778999999999976 3446778889999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+.+.+|++|+|+|++++.. ..++...| .++||.+.||..|+..+++++||+++. +++++++++++|
T Consensus 290 g~~~~~p~~~~~~~~~~~~~--------~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 290 GFRIDHSEAGLYLWATRGED--------AWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred CCCCcCCCccEEEEEECCCC--------HHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 98889999999999987531 13466655 578999999998876667899999986 789999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=239.65 Aligned_cols=213 Identities=17% Similarity=0.278 Sum_probs=169.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.+....+ .+. ..+++++++|
T Consensus 141 ~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~--------~~~~~i~~~S 209 (356)
T PRK08056 141 PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP---QLA--------DNPHLWVLRS 209 (356)
T ss_pred CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHH---Hhc--------cCCCEEEEEe
Confidence 57899999999999999999999999999999999999999999987554322212 122 2368899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||.+|++|+|+||++++++.+.+.+......+.++.+.|.++..++... .+.++.++.++++++++.+.|+++ +
T Consensus 210 ~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~ 285 (356)
T PRK08056 210 LTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDR----AYQQATWQWLAEEGARFYQALCALPL 285 (356)
T ss_pred chhhccCcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999665555555554444557778888888888753 446788899999999999999887 7
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.++ +|+|+|++++.. . .+++..|+ ++||.+.||..|.....+++||+++ ++++.+.+++.|++++
T Consensus 286 ~~~~~~-~~~~~~~~~~~~--~------~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 286 LTVWPG-RANYLFLRCERP--D------IDLQRALL-TQRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVL 353 (356)
T ss_pred cEEcCC-CCcEEEEEcCCC--h------HHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHH
Confidence 776655 568899988732 1 35777777 6799999999996555679999997 4788888888887764
Q ss_pred H
Q 044773 249 D 249 (289)
Q Consensus 249 ~ 249 (289)
+
T Consensus 354 ~ 354 (356)
T PRK08056 354 T 354 (356)
T ss_pred c
Confidence 3
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=236.74 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=160.4
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++.+..+++++++++|||||||.++++++ |.++++++++ +|+||+|.++.+++. ..+....+. ..+
T Consensus 140 ~~~~~~~~~~~~~~l~nP~NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~--------~~~ 206 (360)
T PRK07392 140 QTLPPQLTPNDGLLLNNPHNPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLA--------EYP 206 (360)
T ss_pred HHHHHhccCCCEEEEeCCCCCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhh--------cCC
Confidence 344444457899999999999999999555 5555667775 666999998866543 234333332 447
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||.||++|+|+||++++++.+ +.+......+.+|.+.|.++..++++..+ .+..++.++++++++.+
T Consensus 207 ~vi~i~S~SK~~~l~GlRiG~~v~~~~~~-~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~ 281 (360)
T PRK07392 207 NLIILRSLTKFYSLPGLRLGYAIAHPDRL-QRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQ 281 (360)
T ss_pred CEEEEEechhhhcCCchheeeeeCCHHHH-HHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999965544 44554444455889999999999987544 45556678889999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC-CHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM-SEDTLKLS 240 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~-~~e~l~~~ 240 (289)
.|+++ |+.+.+ ++++|+|++++. + ..+++..+++++||.+.||..|+..+++++||+++.. +.+++.++
T Consensus 282 ~L~~~~~~~~~~-~~~~fl~~~~~~--~------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~a 352 (360)
T PRK07392 282 GLASLPGLTPLP-SAANFLLVQSQG--S------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEA 352 (360)
T ss_pred HHHhCCCcEECC-CCCCEEEEEcCC--C------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 99887 777654 778999998763 1 2468888777889999999999766678999999852 12455555
Q ss_pred HHHH
Q 044773 241 MQRL 244 (289)
Q Consensus 241 l~~l 244 (289)
++++
T Consensus 353 l~~~ 356 (360)
T PRK07392 353 LAAI 356 (360)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=241.06 Aligned_cols=217 Identities=17% Similarity=0.268 Sum_probs=167.7
Q ss_pred HHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++... ++.++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.++ +....++..+.+ .
T Consensus 163 ~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~--------~ 234 (396)
T PRK09257 163 LADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA--------A 234 (396)
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh--------c
Confidence 3444433 23456677999999999999999999999999999999999999988654 222334444422 3
Q ss_pred CCceEEEecCccccCCCCceEEEEEe--cC-HHHHHH---HHhc--cccCCCChHHHHHHHHHhCCchH---HHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYS--ND-DTVVAA---ATKM--SSFGLVSSQTQYLLSALLSDKKF---AQNYISEN 149 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~--~~-~~~~~~---~~~~--~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~ 149 (289)
.+++++++||||.++++|+|+||+++ ++ +.+... +... ..+..++.+.|.+++.++.++.+ .++++++.
T Consensus 235 ~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 314 (396)
T PRK09257 235 GLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEM 314 (396)
T ss_pred CCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46799999999999988999999984 33 322222 2222 23343577999999999998653 26778889
Q ss_pred HHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 150 KKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++.++++++.+.+.|++.+ +.+..|+||+|+|++++. +++..+++++||.+.|. +
T Consensus 315 r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~-- 373 (396)
T PRK09257 315 RERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G-- 373 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--
Confidence 9999999999999999874 667889999999998752 46677888999999872 2
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
||+++..+++++++++++|++++
T Consensus 374 ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 374 RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred eEEEeeCCHHHHHHHHHHHHhhC
Confidence 99997679999999999998753
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=220.25 Aligned_cols=228 Identities=22% Similarity=0.350 Sum_probs=194.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.+++++||+||.|.+++.+.|++|+++|+++++.||.||+|.++.|++.++.++.++... --|+.+||
T Consensus 198 ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi---------VPVitlgg 268 (447)
T KOG0259|consen 198 ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI---------VPVITLGG 268 (447)
T ss_pred cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc---------CceEeecc
Confidence 479999999999999999999999999999999999999999999999999999999888543 56788999
Q ss_pred CccccCCCCceEEEEEecCH-------HHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDD-------TVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~-------~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
+||.|=.||||+||++..+. .+.+.+..+.. ...++++.|.++-..|+.-. +++..+....++.+.+.-.
T Consensus 269 isKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y 346 (447)
T KOG0259|consen 269 ISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCY 346 (447)
T ss_pred cccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998432 22233334433 34467799999999999754 7789999999999999999
Q ss_pred HHHHhc-CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 162 SGLEKA-GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~-g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.|.+. ++. ...|+|.+|+|+++.-.. -..+.++.+|+..|.+|..+.+.||..|+. ++|+|++++. +.+.+++
T Consensus 347 ~~Lk~IP~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~-~~~~lee 422 (447)
T KOG0259|consen 347 SRLKDIPCLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITV-EEEMLEE 422 (447)
T ss_pred HHHhcCCCcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEcc-ChHHHHH
Confidence 999998 777 467999999999877431 123355578999999999999999999987 8999999994 8899999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
+.+||+.+.+...
T Consensus 423 a~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 423 AFSRIKEFCDRHS 435 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988766
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=233.55 Aligned_cols=213 Identities=27% Similarity=0.479 Sum_probs=170.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH------cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE------KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~------~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
++++++++++||||||.+++.+++++|+++|++ +++++|+||+|.++.+++....++.+ ..++
T Consensus 167 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-----------~~~~ 235 (394)
T PRK06836 167 PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK-----------YYDN 235 (394)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH-----------ccCc
Confidence 468999999999999999999999999999999 89999999999998776544333322 2367
Q ss_pred eEEEecCccccCCCCceEEEEEecCHHH-----HHHHHhcc---ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDTV-----VAAATKMS---SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~~-----~~~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+++++||||.+|+||+|+||+++++... ........ ....++++.|.++..++.+.. .++.+++
T Consensus 236 ~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~ 307 (394)
T PRK06836 236 SIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKR 307 (394)
T ss_pred EEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHH
Confidence 9999999999999999999999965431 11111111 123467789999999998741 2456788
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHH
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 235 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e 235 (289)
+++.+.+.|+++|+++.++++|+|+|++++.. + ..+++..+ .++||.+.||..|+. .+++||+++ .+++
T Consensus 308 ~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~-~------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~-~~~~ 376 (394)
T PRK06836 308 NRDLLYDGLTELGFECVKPQGAFYLFPKSPEE-D------DVAFCEKA-KKHNLLLVPGSGFGC--PGYFRLSYC-VDTE 376 (394)
T ss_pred HHHHHHHHHHhCCCEeecCCceEEEEEeCCCC-C------HHHHHHHH-HhCCEEEECchhcCC--CCeEEEEec-CCHH
Confidence 88999999999899999999999999988752 2 24566555 578999999999974 579999998 5899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~ 252 (289)
++++++++|+++++++.
T Consensus 377 ~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 377 TIERSLPAFEKLAKEYK 393 (394)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999997653
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=228.11 Aligned_cols=206 Identities=19% Similarity=0.255 Sum_probs=163.6
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
.++++++||||||||.+++.+++++|++.|++++.++|+||+|.++... .++..+. ..+++++++||
T Consensus 130 ~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~---------~~~~vi~l~Sf 196 (339)
T PRK06959 130 ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHT---------DRPGLVVLRSV 196 (339)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhcc---------CCCCEEEEecC
Confidence 4678999999999999999999999999999999999999999986321 2333331 23678999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||+||++|+|+||++++ +.+.+.+.+....+.+|.+.|.++..++++..+ .++.++.++++++++.+.|+++|++
T Consensus 197 SK~~gl~GlRiGy~v~~-~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~ 271 (339)
T PRK06959 197 GKFFGLAGVRAGFVLAA-PALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFA 271 (339)
T ss_pred hhhcCCcchheEEEecC-HHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999996 455566665555555889999999999987544 5677899999999999999998877
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+. .+++|+|++++. . .++...|. ++||.++. |+ ..+++||+++. ++++.+.+++.|+++++.
T Consensus 272 ~~--~~~~f~~~~~~~---~------~~l~~~l~-~~GI~vr~---~~--~~~~lRisi~~-~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 272 VH--ATPLFSWTDDPR---A------AALHAALA-RRGIWTRY---FA--PPPSVRFGLPA-DEAEWQRLEDALAECVPT 333 (339)
T ss_pred cc--CcceEEEEeCCC---H------HHHHHHHH-hCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHHH
Confidence 65 357899998752 1 35777666 66999985 32 24599999963 678999999999887766
Q ss_pred HH
Q 044773 251 IT 252 (289)
Q Consensus 251 ~~ 252 (289)
..
T Consensus 334 ~~ 335 (339)
T PRK06959 334 LA 335 (339)
T ss_pred Hh
Confidence 54
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=233.73 Aligned_cols=209 Identities=19% Similarity=0.276 Sum_probs=165.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++.++++.|+ +++++|+||+|.++.+.+.. .+...... ..+++++++|
T Consensus 150 ~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~-~~~~~~~~--------~~~~vi~~~S 219 (359)
T PRK03158 150 EQTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDY-PDTLPLLE--------KYENLIVLRT 219 (359)
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccc-ccHHHHHH--------hcCCEEEEEe
Confidence 57899999999999999999998888888764 69999999999987664432 23223322 4478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||+++++ .+.+.+......+.+|++.|.++..++++.. +.++.++.++++++.+.+.|++.|+
T Consensus 220 ~SK~~g~~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (359)
T PRK03158 220 FSKAYGLAALRVGYGIASE-ELIEKLNIARPPFNTTRIAQYAAIAALEDQA----FLKECVEKNAEGLEQYYAFCKEYGL 294 (359)
T ss_pred chHhhcCcchhhehhcCCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999965 4455555444445588999999999998744 4566777788888999999988888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
.+.++ +|+|+|++++. + ..+++..++ ++||.+.||..|+. ++++||+++ ++++++.++++|+++
T Consensus 295 ~~~~~-~g~~i~~~~~~--~------~~~~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 295 FYYPS-QTNFIFVDTGR--D------ANELFEALL-KKGYIVRSGAALGF--PTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred eeCCC-cCcEEEEECCC--C------HHHHHHHHH-HCCeEEeeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHh
Confidence 77654 56799998742 1 246777777 57999999999963 579999998 589999999999875
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=232.78 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=161.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++|++ +++||+||+|.++.+.+ +...... ..+++++++|
T Consensus 153 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~----~~~~~~~--------~~~~vi~~~S 219 (357)
T PRK14809 153 DGERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP----SAVALVE--------ERDDVAVLRT 219 (357)
T ss_pred cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc----hhHHHHh--------hCCCEEEEec
Confidence 468999999999999999999999999999875 78999999999875432 2122221 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||++++++ +.+.+......+..+++.|.++..++.+ .+++++.++.++++++.+.+.|.+.+
T Consensus 220 fSK~~~~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~- 293 (357)
T PRK14809 220 FSKAYGLAGLRLGYAVVPEE-WADAYARVNTPFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAPT- 293 (357)
T ss_pred chhHhcCcchhheeeecCHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 99999999999999999654 4445554444455788889988888875 45678888899999999999997542
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
. +.+|+|+|+++++ ..++...+ +++||.+.||..|+. ++++||+++ +++++++++++|+++++
T Consensus 294 --~-~~~g~f~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 294 --W-ESAGNFVLAEVGD---------ASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred --C-CCCCCEEEEECCC---------HHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 2 5677899998741 13577665 577999999999974 579999997 47899999999998764
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=231.04 Aligned_cols=211 Identities=15% Similarity=0.243 Sum_probs=163.9
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|+++|||||||.+++.+++++|++.|+ ++++||+||+|.++.+. .+...... ..+++++++
T Consensus 150 ~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~----~~~~~~~~--------~~~~vi~~~ 216 (364)
T PRK04781 150 ASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV----PSAVGLLA--------RYDNLAVLR 216 (364)
T ss_pred ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC----cchHHHHh--------hCCCEEEEe
Confidence 357999999999999999999999999999886 47999999999987532 12223322 447899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
||||+||++|+|+||+++++ .+.+.+.+....+..+++.|.++..++.++.+ ++..+..+.++++++.+.+.|+++
T Consensus 217 SfSK~~gl~GlRvGy~v~~~-~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~ 293 (364)
T PRK04781 217 TLSKAHALAAARIGSLIANA-ELIAVLRRCQAPYPVPTPCAALAEQALSAPAL--AVTARRVAEVRAERERLHAALAQLP 293 (364)
T ss_pred cChhhcccccceeeeeeCCH-HHHHHHHhccCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999954 55566666655556888999999999987643 334555557899999999999987
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
++....|++|+|+|++++. . .++...+ .++||.+.||..|+. .++++||+++. +++.+.+++.|+++
T Consensus 294 ~~~~~~p~~g~f~~~~~~~---~------~~~~~~l-~~~gI~v~~~~~~~~-~~~~~Ris~~~--~~~~~~l~~al~~~ 360 (364)
T PRK04781 294 GVRRVYPSQGNFLLVRFDD---A------EAAFQAL-LAAGVVVRDQRAAPR-LSDALRITLGT--PEQNDRVLAALQRT 360 (364)
T ss_pred CCCeECCCCCcEEEEEcCC---H------HHHHHHH-HHCCeEEeeCCCCCC-CCCeEEEeCCC--HHHHHHHHHHHHHH
Confidence 6654457778999999862 1 3455555 478999999987753 36799999984 78888888888765
Q ss_pred H
Q 044773 248 V 248 (289)
Q Consensus 248 l 248 (289)
.
T Consensus 361 ~ 361 (364)
T PRK04781 361 Q 361 (364)
T ss_pred H
Confidence 3
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=232.09 Aligned_cols=212 Identities=18% Similarity=0.240 Sum_probs=165.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++ ++++|+||+|.++.+++ ...+......+ ..+++++++|
T Consensus 158 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~-------~~~~vi~i~S 228 (371)
T PRK05166 158 RAPRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD-DYPSALTLLKA-------RGLPWIVLRT 228 (371)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc-CcccHHHHHhh-------cCCCEEEEee
Confidence 367999999999999999999999999999874 88999999999876433 33344444331 2357999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.||++|+|+||++++++.+.+.+........+|.+.|.++..++... +++++.++.++++++.+.+.|++.|+
T Consensus 229 fSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~ 304 (371)
T PRK05166 229 FSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDE----EHLAKGVALALAERERLKKELAEMGY 304 (371)
T ss_pred chHhhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999988677777666655555558889998888888763 45777788899999999999998888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.+. +.+|+|+|++++.. ..+++..++ ++||.+.||..++ .++++||+++. +++.+.+.+.|+.++
T Consensus 305 ~~~-p~~g~fl~~~~~~~--------~~~l~~~l~-~~gi~v~p~~~~~--~~~~iRi~~~~--~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 305 RIA-PSRANFLFFDARRP--------ASAVAEALL-RQGVIVKPWKQPG--FETFIRVSIGS--PEENDHFVAALDKVL 369 (371)
T ss_pred eeC-CCcCCEEEEeCCCC--------HHHHHHHHH-HCCeEEecCCCCC--CCCeEEEEcCC--HHHHHHHHHHHHHHh
Confidence 754 55678999987531 245777777 5699999998654 36899999984 566666666666554
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=224.07 Aligned_cols=203 Identities=21% Similarity=0.309 Sum_probs=157.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++++++|||||||.+++.+++++|+++|++++++||+||+|.++. ...++..+ +..+++++++||
T Consensus 124 ~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~----~~~s~~~~---------~~~~~vi~~~Sf 190 (330)
T PRK05664 124 SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT----PQHSLAAC---------AHRPGLIVLRSF 190 (330)
T ss_pred CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC----Cccccccc---------ccCCCEEEEeec
Confidence 57889999999999999999999999999999999999999997642 11344443 234689999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||++|++|+|+||+++++ .+.+.+......+..+++.|.++..+|.+..+ .++.++.++++++++.+.|++.|++
T Consensus 191 SK~~gl~GlRiG~~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~ 265 (330)
T PRK05664 191 GKFFGLAGARLGFVLAEP-ALLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLT 265 (330)
T ss_pred cccccCCCcceEEEEeCH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999999999999964 45555555444445788999999999987543 5667889999999999999998764
Q ss_pred eecCCce--EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 171 CLKSNAG--LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 171 ~~~~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+| +|+|+++++ ..++...|. ++||.+.+ |+ ..+++||+++. ++++.+++.+.|+++.
T Consensus 266 ---~~~~~~~f~~~~~~~---------~~~~~~~l~-~~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 266 ---PAGGCALFQWVRTED---------AAALHEFLA-RRGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYR 326 (330)
T ss_pred ---ccCCcceEEEEecCC---------HHHHHHHHH-HCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHH
Confidence 3334 788887641 134666654 77999974 43 34799999984 6777888888887765
Q ss_pred HH
Q 044773 249 DS 250 (289)
Q Consensus 249 ~~ 250 (289)
++
T Consensus 327 ~~ 328 (330)
T PRK05664 327 KE 328 (330)
T ss_pred hh
Confidence 54
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=226.40 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=162.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++ .++|+ ++.++|+||+|.++. .+. ..++.+. ..+++++++|
T Consensus 138 ~~~~~i~l~np~NPTG~~~~~~~l---~~l~~-~~~~iIvDe~y~~~~-~~~-~~~l~~~----------~~~~~i~i~S 201 (349)
T PRK07908 138 DDADLVVIGNPTNPTSVLHPAEQL---LALRR-PGRILVVDEAFADAV-PGE-PESLAGD----------DLPGVLVLRS 201 (349)
T ss_pred cCCCEEEEcCCCCCCCCCcCHHHH---HHHHh-cCCEEEEECcchhhc-cCC-ccccccc----------cCCCEEEEee
Confidence 468899999999999999996654 55555 478899999999763 232 2343332 2357899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||+++++ .+.+.+......+..+++.+.++..++... . .+++++.++.++++++++.+.|.++|+
T Consensus 202 ~SK~~~l~GlRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~r~~l~~~L~~~~~ 278 (349)
T PRK07908 202 LTKTWSLAGLRVGYALGAP-DVLARLTRGRAHWPVGTLQLEAIAACCAPR-A-VAEAAADAARLAADRAEMVAGLRAVGA 278 (349)
T ss_pred cccccCCccceeeeeecCH-HHHHHHHhcCCCCCccHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999964 455555554444557778888888888743 2 567888899999999999999998888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++.+|++|+|+|+++++ . ..+.. .++++||.+.||..|+..+++++||+++ +++++++++++|++++.
T Consensus 279 ~~~~p~~g~~~~~~~~~---~------~~~~~-~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 279 RVVDPAAAPFVLVRVPD---A------ELLRK-RLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred EeccCCCceEEEEECCc---H------HHHHH-HHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 88888899999999874 1 23444 4568899999999996555789999996 57888888888887654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=228.29 Aligned_cols=205 Identities=19% Similarity=0.250 Sum_probs=156.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|+++| ++++||+||+|.++.+ . ..+..+ . ..+++++++|
T Consensus 167 ~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~--~~~~~~-~--------~~~~~ivi~S 231 (374)
T PRK02610 167 PPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--T--TLVGEL-A--------QHPNWVILRT 231 (374)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--c--chHHHH-h--------cCCCEEEEEe
Confidence 4799999999999999999999999999876 4899999999998632 1 112222 1 2357888999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||++|++|+|+||++++ +.+.+.+......+..|.+.|.++..+++.. +.+.+..++.+++ ++.+.+.|+++ +
T Consensus 232 fSK~~g~~GlRiG~~v~~-~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~-r~~l~~~L~~~~~ 306 (374)
T PRK02610 232 FSKAFRLAAHRVGYAIGH-PELIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQE-RDRLYQALQELPQ 306 (374)
T ss_pred cchhccCcccceeeeecC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 999999999999999995 4555555554444457889999999999864 4455555555555 67788888876 6
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+ .|++|+|+|++++...+ ..+++..+ .++||.+.++ ++++||+++. ++++++++++|++++
T Consensus 307 ~~~-~p~~g~f~~~~l~~~~~------~~~~~~~l-~~~gi~v~~~-------~~~lRls~~~--~~~~~~~l~~l~~~l 369 (374)
T PRK02610 307 LRV-WPSAANFLYLRLSQDAA------LAALHQAL-KAQGTLVRHT-------GGGLRITIGT--PEENQRTLERLQAAL 369 (374)
T ss_pred cEe-CCCcceEEEEeCCCCCC------HHHHHHHH-HHCCEEEEeC-------CCeEEEeCCC--HHHHHHHHHHHHHHH
Confidence 664 47788999999975432 24566665 5779999763 3689999984 577899999999887
Q ss_pred HHH
Q 044773 249 DSI 251 (289)
Q Consensus 249 ~~~ 251 (289)
++.
T Consensus 370 ~~~ 372 (374)
T PRK02610 370 TQL 372 (374)
T ss_pred hhc
Confidence 643
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=223.75 Aligned_cols=209 Identities=26% Similarity=0.373 Sum_probs=171.2
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++||||||||..++.++++++++.+.+ +.+||+||||.++ .+ .+...++. .+++++++.||
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF--~~---~~~~~l~~--------~~~nlivlRTf 210 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEF--SP---ESSLELLK--------YPPNLIVLRTF 210 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhc--CC---chhhhhcc--------CCCCEEEEEec
Confidence 58999999999999999999999999999988 9999999999985 22 33333332 34779999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||+||++|+|+||+++ ++.+++.+++....+.+|.+++.++.+++.+. +++++..+..++.++++.+.|+.+|+.
T Consensus 211 SKa~gLAGlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~----~~~~~~~~~~~~~r~rl~~~l~~~~~~ 285 (356)
T COG0079 211 SKAFGLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDA----DYLEESVERIREERERLYAALKALGLF 285 (356)
T ss_pred HHhhhcchhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999888 56777777777767779999999999999984 568899999999999999999998855
Q ss_pred -eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 171 -CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 171 -~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+.+++ +.|++++++... ...+.+.|+ ++||.++.+.. ....++++||+++ ++++.+.++++|.+++.
T Consensus 286 ~v~pS~-aNFvlv~~~~~~-------~~~l~~~L~-~~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~ 353 (356)
T COG0079 286 GVFPSQ-ANFVLVRVPDAE-------AAALAEALL-KKGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLK 353 (356)
T ss_pred eecCCC-CcEEEEECCCcc-------HHHHHHHHH-HCCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 55555 578889988511 134667766 66999999876 4455789999998 46777999999988875
Q ss_pred H
Q 044773 250 S 250 (289)
Q Consensus 250 ~ 250 (289)
.
T Consensus 354 ~ 354 (356)
T COG0079 354 G 354 (356)
T ss_pred c
Confidence 4
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=226.89 Aligned_cols=213 Identities=20% Similarity=0.300 Sum_probs=168.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++.+|++.++ +++++|+||+|.++.+.+....++ .... ..+++++++|
T Consensus 153 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~-~~~~--------~~~~~i~~~S 222 (367)
T PRK02731 153 PRTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGL-ELVA--------KFPNVVVTRT 222 (367)
T ss_pred CCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHH-HHHh--------hcCCEEEEee
Confidence 47899999999999999999999998888775 599999999998876644333333 3322 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||+++++ .+.+.+......+..+++.|.++..++++ ..++++.++.++++++.+.+.|++.|+
T Consensus 223 ~SK~~g~~G~RiG~l~~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~g~ 297 (367)
T PRK02731 223 FSKAYGLAGLRVGYGIAPP-EIIDALNRVRQPFNVNSLALAAAVAALDD----DAFVEKSRALNAEGMAWLTEFLAELGL 297 (367)
T ss_pred ehHhhcCcccceeeeeCCH-HHHHHHHHccCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999964 55555555544455788999999999986 345778888999999999999999888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
.+.+ .+|+|+|++++...+ ..+++..|. ++||.+.|+..|+ .++++||+++ +.++++.+++.|+++++
T Consensus 298 ~~~~-~~g~~~~i~~~~~~~------~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 298 EYIP-SVGNFILVDFDDGKD------AAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred ccCC-CCceEEEEECCCCCC------HHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 7764 456899999854322 246777776 6799999998886 2579999997 57889999999988764
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=216.21 Aligned_cols=242 Identities=20% Similarity=0.216 Sum_probs=185.0
Q ss_pred CCccEEEEeCC--CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC--------CCccChhhhhhcc--cccc
Q 044773 10 LKVKGVLVTNP--SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS--------PGFVSIMEILKDR--NCEN 77 (289)
Q Consensus 10 ~~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--------~~~~~~~~~~~~~--~~~~ 77 (289)
+++++ +.+-| +||||..++.+..++|+++|++|+++||+||.|..+.++. .+..+...+..++ +...
T Consensus 202 ~~p~v-lYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfls 280 (472)
T KOG0634|consen 202 PKPHV-LYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLS 280 (472)
T ss_pred CCCeE-EEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccc
Confidence 44555 56667 8999999999999999999999999999999999887763 1112211222111 2333
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchH--HHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKF--AQNYISENKKRLK 154 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~ 154 (289)
-|..++|+.+.||||.++ ||+|+||+.+++..+...+..... ...++.+.|.++.++|+.... ..+|+.+++..|.
T Consensus 281 lDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt 359 (472)
T KOG0634|consen 281 LDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT 359 (472)
T ss_pred ccccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999997 999999999976666665554321 222666888888888885432 1588999999999
Q ss_pred HHHHHHHHHHHhc---C-CceecCCceEEEEEecCcc--ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-C---CC-
Q 044773 155 QRHRKLVSGLEKA---G-ISCLKSNAGLFCWVDMRHL--LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-E---PG- 223 (289)
Q Consensus 155 ~~~~~l~~~l~~~---g-~~~~~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~---~~- 223 (289)
.|++.+.+.|.+. + .++.+|.+|+|+|++++-. ..+..+....++....+.+.||.+.+|..|... + ..
T Consensus 360 ~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ki 439 (472)
T KOG0634|consen 360 ERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKI 439 (472)
T ss_pred HHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcc
Confidence 9999999999886 4 6789999999999999811 111222334566777778999999999999764 2 23
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++|++++..+.|+++++++|+..++++.-.
T Consensus 440 ffRls~a~a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 440 FFRLSIAFAEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999877999999999999999987643
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=222.44 Aligned_cols=205 Identities=19% Similarity=0.275 Sum_probs=162.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++... .++.... +..+++++++|
T Consensus 124 ~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~~~~~~--------~~~~~~i~~~S 191 (330)
T TIGR01140 124 EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----ASLAPQA--------ARFPGLVVLRS 191 (330)
T ss_pred ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cchhhHh--------ccCCCEEEEEe
Confidence 35789999999999999999999999999999999999999999876432 1333332 13478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG- 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 168 (289)
|||.+|++|+|+||++++++ +.+.+........+|++.|.++..++.+.++ .+..++.++++++.+.+.|++++
T Consensus 192 ~SK~~g~~G~R~G~i~~~~~-~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~ 266 (330)
T TIGR01140 192 LTKFFGLAGLRLGFVVAHPA-LLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGG 266 (330)
T ss_pred cchhhcCchhhhhheeCCHH-HHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999654 5555655554455788999999999987544 55678899999999999999986
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+++. +.+|+|+|++++. . .++++.|+ ++||.+.||..|+..+.+++||+++. +.++ +.++.+|
T Consensus 267 ~~~~-~~~~~f~~~~~~~---~------~~l~~~l~-~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 267 LEVV-GGTALFLLVRTPD---A------AALHEALA-RRGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred ceEC-CCCCeEEEEEcCC---H------HHHHHHHH-HCCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 5544 5578999998763 1 35888877 56999999999965556799999985 4444 6666654
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=224.84 Aligned_cols=213 Identities=20% Similarity=0.234 Sum_probs=166.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++++++|||||||.+++.+++++|+++|++ +++||+||+|..+.+++. ..+ +.. ..+++++++|
T Consensus 154 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~-~~~---~~~--------~~~~~i~~~S 220 (369)
T PRK08153 154 ENAPLVYLANPDNPMGSWHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA-APP---IDT--------DDPNVIRMRT 220 (369)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc-chh---hhh--------cCCCEEEEec
Confidence 478999999999999999999999999998874 999999999998765432 122 211 2367999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||++|++|+|+||+++++ .+.+.+......+.+|++.|.++..++++. +++++.++.++++++.+.+.|++.|+
T Consensus 221 fSK~~g~~GlRiG~~v~~~-~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~~~~~L~~~g~ 295 (369)
T PRK08153 221 FSKAYGLAGARVGYAIGAP-GTIKAFDKVRNHFGMNRIAQAAALAALKDQ----AYLAEVVGKIAAARDRIAAIARANGL 295 (369)
T ss_pred chHhccCcchheeeeecCH-HHHHHHHHhhcCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999965 455555444444558899999999999864 44777888999999999999998887
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.+. |.+++|+|++++... ....++.+.|+ ++||.+. |+... .++++||+++ ++++++.+++.|++++
T Consensus 296 ~~~-p~~~~f~~~~~~~~~-----~~a~~l~~~l~-~~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~~al~~~~ 363 (369)
T PRK08153 296 TPL-PSATNFVAIDCGRDG-----AFARAVLDGLI-ARDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFAEALPEAL 363 (369)
T ss_pred ccC-CCcCcEEEEECCCCc-----ccHHHHHHHHH-HCCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHH
Confidence 754 677889999876311 12245777766 5699995 66432 3579999998 5899999999999988
Q ss_pred HHHH
Q 044773 249 DSIT 252 (289)
Q Consensus 249 ~~~~ 252 (289)
+..+
T Consensus 364 ~~~~ 367 (369)
T PRK08153 364 EAAR 367 (369)
T ss_pred HHhh
Confidence 7543
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=228.95 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=162.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+. ..+....+ +..+++++++|
T Consensus 150 ~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~--------~~~~~vi~~~S 219 (366)
T PRK01533 150 NDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLL--------EKHKNILVLRT 219 (366)
T ss_pred cCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHh--------ccCCCEEEEeC
Confidence 46899999999999999999999999999998866 5777999987654332 12222232 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||+||++|+|+||++++ +.+.+.+......+.+|.+.|.++..+|++.. +.++.++.++++++++.+.++.+|+
T Consensus 220 fSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~r~~~~~~l~~~g~ 294 (366)
T PRK01533 220 FSKAYGLASFRVGYAVGH-EELIEKLNVVRLPFNVSSLAQKAATIAFGDDE----FIEEIVRVNTEGLRQYESFCKENEI 294 (366)
T ss_pred chHHhcChHHHHhHHhCC-HHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999996 45555555454455689999999999998744 4666677788888888899988888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++.++++ .|+|++++. . .++...|+ ++||.|++ | ++++||+++ ++++.+.++++|+++++
T Consensus 295 ~~~~~~~-nf~~~~~~~---~------~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 295 PFYQSQT-NFIFLPVEN---G------GEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFE 354 (366)
T ss_pred ccCCCcC-cEEEEeCCC---H------HHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHH
Confidence 8887765 588898752 1 34677666 68999997 3 368999998 48999999999988765
Q ss_pred HH
Q 044773 250 SI 251 (289)
Q Consensus 250 ~~ 251 (289)
..
T Consensus 355 ~~ 356 (366)
T PRK01533 355 NK 356 (366)
T ss_pred hc
Confidence 43
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=225.00 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=158.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|++.+ +++|+||+|.++.+.+ +....+. ..+++++++|
T Consensus 174 ~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~----~~~~~~~--------~~~~viv~~S 237 (380)
T PLN03026 174 HKPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE----SRMKWVK--------KYDNLIVLRT 237 (380)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc----chHHHHH--------hCCCEEEEec
Confidence 5789999999999999999988888887643 8999999999864432 2222222 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.+|++|+|+||++++++ +.+.+.+....+..+.+.|.++.++|.+. +++++.++.++++++++.+.|++++.
T Consensus 238 fSK~~glaGlRiGy~~~~~~-~i~~l~~~~~~~~~~~~~q~aa~~aL~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~ 312 (380)
T PLN03026 238 FSKRAGLAGLRVGYGAFPLS-IIEYLWRAKQPYNVSVAAEVAACAALSNP----KYLEDVKNALVEERERLFGLLKEVPF 312 (380)
T ss_pred chHhhcCccccceeeecCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhhCH----HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999654 44555555444558889999999999764 44778888999999999999998854
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
....|++++|+|++++...+ ..+++..|+ ++||.++++..++ .++++||+++. +++.+.+++.|+++
T Consensus 313 ~~~~p~~~~f~~~~~~~~~~------~~~~~~~l~-~~gI~v~~~~~~~--~~~~lRis~~~--~~~~~~l~~al~~~ 379 (380)
T PLN03026 313 LEPYPSDANFILCRVTSGRD------AKKLKEDLA-KMGVMVRHYNSKE--LKGYIRVSVGK--PEHTDALMEALKQL 379 (380)
T ss_pred CeECCCCCeEEEEECCCCCC------HHHHHHHHH-HCCeEEEECCCCC--CCCEEEEecCC--HHHHHHHHHHHHHh
Confidence 33457778899999874322 246777777 7799999987633 36799999983 66777777777653
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=225.70 Aligned_cols=206 Identities=17% Similarity=0.250 Sum_probs=160.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|++.|++ +.+||+||+|.++.. . .++..++. ..++++++.|
T Consensus 144 ~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~--~--~s~~~~~~--------~~~n~iv~rS 210 (351)
T PRK01688 144 DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCP--Q--ASLAGWLA--------EYPHLVILRT 210 (351)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCC--C--CChHHHHh--------hCCCEEEEec
Confidence 478999999999999999999999999999886 688999999988631 1 24444443 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||+||++|+|+||++++ +.+.+.+......+.+|.+.|.++..++.+.. .+++++.++.++++++++.+.|+++ +
T Consensus 211 fSK~~glaGlRiGy~i~~-~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~ 287 (351)
T PRK01688 211 LSKAFALAGLRCGFTLAN-EEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPC 287 (351)
T ss_pred chHhhcCHHHHHhHHhCC-HHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999995 44555565555455578888888888887542 3557778888899999999999988 6
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+....|++++|+|++++. ..++...|+ ++||.++++..+. ..++++||+++ ++++++.++++|
T Consensus 288 ~~~~~ps~~nfi~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~-~~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 288 VEQVFDSETNYILARFTA---------SSAVFKSLW-DQGIILRDQNKQP-GLSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred CCeECCCCCcEEEEEcCC---------HHHHHHHHH-HCCeEEEECCCcC-CCCCeEEEeCC--CHHHHHHHHHhh
Confidence 654556677899998752 135777776 6799999876553 22579999998 479999988876
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=222.43 Aligned_cols=219 Identities=16% Similarity=0.266 Sum_probs=167.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++||+||||.+++.+++++|+++|+++|+++|+||+|.++.. +. ...... ..++++++.|
T Consensus 156 ~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~--~~~~~~----------~~~~~i~~~s 222 (380)
T PRK06225 156 ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EH--TLAAEY----------APEHTVTSYS 222 (380)
T ss_pred CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cC--Cchhhc----------CCCCEEEEee
Confidence 4689999999999999999999999999999999999999999986532 11 122222 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|||.+|++|+|+||++++++ +.+.+.... ...+.+.+.|.++..++... .++.++.++.++++++.+.+.|+++
T Consensus 223 ~SK~~g~~G~RiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (380)
T PRK06225 223 FSKIFGMAGLRIGAVVATPD-LIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIE 298 (380)
T ss_pred chhhcCCccceeEEEecCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999654 444444332 23346788888888888653 4556777788888888899999885
Q ss_pred CCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+ ..+.+|+++|++++... .+..+++..|. ++||.+.||..|+. .+++++|++++. +++++++++++|+
T Consensus 299 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~ 371 (380)
T PRK06225 299 GVFLPVYPSHGNMMVIDISEAG-----IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFP 371 (380)
T ss_pred CCccccCCCCCeEEEEEccccc-----CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHH
Confidence 5433 23556778899886421 12356777776 77999999987754 245799999985 8999999999999
Q ss_pred HHHHHHH
Q 044773 246 AFVDSIT 252 (289)
Q Consensus 246 ~~l~~~~ 252 (289)
+++++..
T Consensus 372 ~~~~~~~ 378 (380)
T PRK06225 372 DVVETLR 378 (380)
T ss_pred HHHHHhh
Confidence 9998764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=220.54 Aligned_cols=206 Identities=20% Similarity=0.314 Sum_probs=160.0
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.++++++++.++ +++++|+||+|.++. .. .+..++.. ..++++++.
T Consensus 163 ~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~--~~--~s~~~~~~--------~~~~vi~~~ 229 (370)
T PRK09105 163 DPNAGLIYICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFS--DA--PSVVDLVA--------QRKDLIVLR 229 (370)
T ss_pred CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhc--cC--cchHHHHh--------hCCCEEEEe
Confidence 457899999999999999999999999998754 599999999997642 21 24444432 457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||||.+|++|+|+||+++++ .+.+.+... .....+.+.|.++..++.+ .+++++.++.++++++++.+.|+++|
T Consensus 230 SfSK~~g~~GlRiG~~v~~~-~~i~~l~~~-~~~~~~~~~~~aa~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~g 303 (370)
T PRK09105 230 TFSKLYGMAGMRLGLAAARP-DLLAKLARF-GHNPLPVPAAAAGLASLRD----PKLVPQRRAENAAVREDTIAWLKKKG 303 (370)
T ss_pred cccHhhcCCccceeeeecCH-HHHHHHHhc-CCCCcCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999964 445545444 3344777888888888876 44578888899999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+++.+++++|++ ++++. +..+++..|++ +||.+ +..|+ ..++++||+++ ++++++.+++.|++++
T Consensus 304 ~~~~~~~~~f~~-~~~~~--------~~~~l~~~L~~-~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 304 YKCTPSQANCFM-VDVKR--------PAKAVADAMAK-QGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCcCCCCCcEEE-EeCCC--------CHHHHHHHHHH-CCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 988888888774 77652 12468888874 59998 34453 24689999998 4788888888887765
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=210.85 Aligned_cols=193 Identities=20% Similarity=0.289 Sum_probs=143.0
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++.. . ..+++++++||
T Consensus 117 ~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~------~----------~~~~vi~~~S~ 180 (311)
T PRK08354 117 RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES------P----------EGENIIKLRTF 180 (311)
T ss_pred CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc------c----------CCCcEEEEecc
Confidence 4678999999999999999999999999999999999999999988665321 0 23689999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||+||++|+|+||+++ +.+.+.........+.+.+.++..+++. . .+++++.++.++++++.+.+.+
T Consensus 181 SK~~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~l------ 247 (311)
T PRK08354 181 TKSYGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIED-D--FEHLRKTMPLIWREKERFEKAL------ 247 (311)
T ss_pred HhhcCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHh-H--HHHHHHHHHHHHHHHHHHHHhc------
Confidence 9999999999999999 3344555554555677777777777763 2 2445565666666655554443
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
..+++++|++ ++++. ..++++.+. ++||.+.||..|+. ++++||+++. +++.+++++.|+++
T Consensus 248 ~~~~~~~~~~-~~~~~---------~~~~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~~--~~~~~~l~~al~~~ 309 (311)
T PRK08354 248 YVKSDANFFI-KDVGD---------AEKFVEFLK-RNGILVRDCTSFGL--PGYIRFSVRD--REENEKLIRALREW 309 (311)
T ss_pred CCCCCCcEEE-EECCC---------HHHHHHHHH-HCCeEEEecccCCC--CCeEEEEeCC--HHHHHHHHHHHHHh
Confidence 2356777666 55541 135777665 77999999999963 5899999984 55666666666553
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=217.05 Aligned_cols=212 Identities=21% Similarity=0.314 Sum_probs=160.6
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++... ++++|+++|||||||.+++.+++++|+++| ++++|+||+|.++.+.+. .+..++.+ ..+
T Consensus 153 ~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~--~~~~~~~~--------~~~ 218 (368)
T PRK03317 153 VAAIAEH-RPDVVFLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT--PSALTLLP--------EYP 218 (368)
T ss_pred HHHHhcc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC--cCHHHHHH--------hCC
Confidence 4444433 688999999999999999988888887766 799999999998765442 23344432 335
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||++|++|+|+||+++++ .+.+.+......+.+|++.|.++..+++... +..+.++.++++++.+.+
T Consensus 219 ~~i~~~SfSK~~g~~GlRiG~~~~~~-~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~ 293 (368)
T PRK03317 219 RLVVSRTMSKAFAFAGGRLGYLAAAP-AVVDALRLVRLPYHLSAVTQAAARAALRHAD----ELLASVAALRAERDRVVA 293 (368)
T ss_pred CEEEEEechhhhccchhhhhhhhCCH-HHHHHHHhcCCCCCCCHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999954 4555555444445588899999999998632 234455668888999999
Q ss_pred HHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 163 GLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 163 ~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
.|++.|+.+.++++++++|.++.. ..++...|+ ++||.+.++. .++++||+++ ++++++.+++
T Consensus 294 ~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~~~~~ 356 (368)
T PRK03317 294 WLRELGLRVAPSDANFVLFGRFAD---------RHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEENDAFLA 356 (368)
T ss_pred HHHHCCCEeCCCCCcEEEEeccCC---------HHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHHHHHH
Confidence 999889988889999988866531 134666665 6799998742 2579999997 4788999998
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
.++++++.
T Consensus 357 ~l~~~~~~ 364 (368)
T PRK03317 357 ALAEVLAT 364 (368)
T ss_pred HHHHHHHH
Confidence 88887653
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=217.53 Aligned_cols=209 Identities=18% Similarity=0.237 Sum_probs=160.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++.. .++++|+++|||||||.+++.+++++|+++| +.++|+||+|.++... ... ..+. ..+
T Consensus 146 ~~~~~~-~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~--~~~---~~~~--------~~~ 208 (356)
T PRK04870 146 LAAIAE-HRPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGD--SWL---PRLA--------RFP 208 (356)
T ss_pred HHHhhc-CCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCc--chH---HHHh--------hCC
Confidence 344433 3789999999999999999999999999988 7889999999875321 111 1111 346
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+++++.|||| +|++|+|+||++++++ +.+.+......+..+.+.|.++..+++.. +++++.++.++++++.+.+
T Consensus 209 ~vi~~~S~SK-~~~~GlRiG~~i~~~~-~i~~~~~~~~~~~~~~~~q~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~ 282 (356)
T PRK04870 209 NLLVMRTVSK-LGLAGLRLGYLAGHPA-WIAELDKVRPPYNVNVLTQATALFALEHV----DVLDAQAAQLRAERTRLAA 282 (356)
T ss_pred CEEEEecchh-hhhHHHhhhhhhCCHH-HHHHHHHccCCCcCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHH
Confidence 7999999999 8999999999999654 44445444444457889998888888753 3367778888999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|+++ |+.+. +.+|+|+|++++. . .++...+ +++||.+.|+..|+...++++||+++ ++++.+.++
T Consensus 283 ~L~~~~~~~~~-~~~~~~~~~~~~~---~------~~~~~~l-~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~ 349 (356)
T PRK04870 283 ALAALPGVTVF-PSAANFILVRVPD---A------AAVFDGL-KTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFL 349 (356)
T ss_pred HHHhCCCcEEC-CCCCeEEEEECCC---H------HHHHHHH-HHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHH
Confidence 99987 77665 5566799998761 1 3455554 58899999999997656789999998 478888888
Q ss_pred HHHHHH
Q 044773 242 QRLKAF 247 (289)
Q Consensus 242 ~~l~~~ 247 (289)
++|.++
T Consensus 350 ~al~~~ 355 (356)
T PRK04870 350 AALKAA 355 (356)
T ss_pred HHHHHh
Confidence 888765
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=220.82 Aligned_cols=176 Identities=18% Similarity=0.314 Sum_probs=136.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++|+++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. .+.++.++..+++ .+.+..+++++++|
T Consensus 210 ~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~-~~~~~~~~vI~~~S 288 (407)
T PLN02368 210 TVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMG-PPISKEVQLVSFHT 288 (407)
T ss_pred CeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhc-ccccccceEEEEec
Confidence 689999999999999999999999999999999999999999999888654 4456655532210 00012358999999
Q ss_pred Ccccc-CCCCceEEEEEe--cCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCch-----H--HHHHHHHHHHHHHHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYS--NDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKK-----F--AQNYISENKKRLKQRHR 158 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~--~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~-----~--~~~~~~~~~~~~~~~~~ 158 (289)
|||+| |++|+|+||+++ .++.+.+.+.... ..++.|.+.|.++..++.... + ..++.++..+.|++|++
T Consensus 289 fSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~ 368 (407)
T PLN02368 289 VSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRAR 368 (407)
T ss_pred CCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999 899999999995 2344444444432 234478899999999997541 1 03334567899999999
Q ss_pred HHHHHHHhc-CCceecCCceEEEEEecCcc
Q 044773 159 KLVSGLEKA-GISCLKSNAGLFCWVDMRHL 187 (289)
Q Consensus 159 ~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~ 187 (289)
.+.+.|+++ |+.+..|+|+||+|++++-+
T Consensus 369 ~~~~~L~~~~g~~~~~P~Gafy~~~~i~lp 398 (407)
T PLN02368 369 MMTDGFNSCKNVVCNFTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHHHhCCCCeEeCCCCeeeEeccCCCCC
Confidence 999999998 99999999999999876643
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=214.19 Aligned_cols=205 Identities=18% Similarity=0.257 Sum_probs=155.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.++ +.++|+++++++|+||+|.++. +. +...+.. ..+++++++|
T Consensus 157 ~~~~~v~~~~p~nptG~~~~~~~---l~~l~~~~~~~li~De~y~~~~--~~---~~~~~~~--------~~~~vi~~~S 220 (361)
T PRK00950 157 EKTKVIFLCTPNNPTGNLIPEED---IRKILESTDALVFVDEAYVEFA--EY---DYTPLAL--------EYDNLIIGRT 220 (361)
T ss_pred cCCCEEEEeCCCCCCCCCcCHHH---HHHHHHHCCcEEEEECchhhhC--cc---chHHHHH--------hcCCEEEEEe
Confidence 46899999999999999999555 5555677899999999998753 22 2222322 3368899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||++|++|+|+||++++++ +.+.+......+..+++.|.++..++.+. +++++.++.++++++.+.+.|. +
T Consensus 221 ~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~l~---~ 292 (361)
T PRK00950 221 FSKVFGLAGLRIGYGFVPEW-LIDYYMRAKTPFSLTRLSQAAAIAALSDK----EYIEKSIEHGIKSREYLYNELP---F 292 (361)
T ss_pred ehHhhcCchhhcchhcCCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHhhcC---e
Confidence 99999999999999999654 44445444444447889999988888764 3466777788888888887775 4
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
.+. +++++|+|++++. . +..+++..|. ++||.+.||..|+..+++++||+++ ++++++++++.|+++++
T Consensus 293 ~~~-~~~~~~i~~~~~~-~------~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 293 KVY-PSEANFVLVDVTP-M------TAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIVE 361 (361)
T ss_pred eEC-CCcceEEEEECCC-C------CHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHhC
Confidence 444 5667899999832 1 2256888877 5699999999887556789999998 57899999999988753
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=214.97 Aligned_cols=205 Identities=18% Similarity=0.270 Sum_probs=156.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++.+++++|++.|+ +++||+||+|.++.. . .+..++.. ..+++++++|
T Consensus 146 ~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~--~--~s~~~~~~--------~~~~~iv~~S 211 (354)
T PRK04635 146 DGAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCP--E--YSVADLLA--------SYPNLVVLRT 211 (354)
T ss_pred cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhcc--C--cchHHHHh--------hCCCEEEEec
Confidence 57899999999999999999999999998876 499999999987532 1 23334432 3467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG- 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g- 168 (289)
|||++|++|+|+||+++++ .+.+.+......+..+.+.|.++..++.+.. .+++++..+.++++++.+.+.|++++
T Consensus 212 ~SK~~~l~GlRlG~~i~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~ 288 (354)
T PRK04635 212 LSKAFALAGARCGFTLANE-ELIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGARLQAALSMYGG 288 (354)
T ss_pred hHHHhhhhHHHHhhhhCCH-HHHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999964 4555555444444477788888888887643 34467778889999999999999885
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
+++.++++ .|+|++++. . .++...+ .++||.+.++..+ ..++++||+++ ++++++.++++|++
T Consensus 289 ~~~~~~~g-~f~~~~~~~---~------~~~~~~l-~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 289 AKVLEGNG-NYVLAKFDD---V------DAVFKAL-WDAGIVARAYKDP--RLANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred ceECCCCC-cEEEEECCC---H------HHHHHHH-HHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 77777664 688888762 1 2455544 5789999876432 23579999997 58999999888864
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=210.37 Aligned_cols=197 Identities=19% Similarity=0.325 Sum_probs=150.5
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++++++|||||||.+++.+++++|+ +++++||+||+|.++. +. +....+. ..+++++++||
T Consensus 138 ~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~---~~~~~~~--------~~~~vi~~~S~ 200 (335)
T PRK14808 138 EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GE---SYVDLLK--------KYENLAVIRTF 200 (335)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CC---chHHHHH--------hCCCEEEEEec
Confidence 468999999999999999988888876 4799999999999852 22 2222322 33689999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||++|++|+|+||+++++ .+.+.+......+..+.+.|.++..++... ++..+..+.++++++++.+.|++.|++
T Consensus 201 SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~ 275 (335)
T PRK14808 201 SKAFSLAAQRIGYVVSSE-KFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYR 275 (335)
T ss_pred hhhccCcccceEEEEeCH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 999999999999999965 455555555444557889999988888753 345666777888889999999998988
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
+.+++| .|+|+.++.. +..++.+.+. ++||.|++ | ..++||+++. +++.+.+++.|+++
T Consensus 276 ~~~~~g-~f~~~~l~~~-------~~~~~~~~l~-~~Gi~V~~---~----~~~~Risi~~--~~~~~~~~~~l~~~ 334 (335)
T PRK14808 276 ITDSRG-NFVFIFMEKE-------EKERLLEHLR-AKNIAVRS---F----REGVRITIGK--REENDMILKELEVF 334 (335)
T ss_pred ECCCCC-eEEEEeCCCc-------cHHHHHHHHH-HCCeEEEE---C----CCCeEEecCC--HHHHHHHHHHHHhh
Confidence 887766 4778988732 1134666555 77999985 3 2589999984 78888888888754
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=210.22 Aligned_cols=208 Identities=19% Similarity=0.315 Sum_probs=151.9
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++.. .++|+|+++|||||||.+++.+++.+++ ++++.++|+||+|.++ + +....+ .. +..+
T Consensus 141 ~~~~~~-~~~k~v~l~~p~NPtG~~~~~~~l~~l~---~~~~~~~ivDe~y~~~-~-~~~~~~---~~--------~~~~ 203 (351)
T PRK14807 141 IKVIEK-YQPKLVFLCNPNNPTGSVIEREDIIKII---EKSRGIVVVDEAYFEF-Y-GNTIVD---VI--------NEFE 203 (351)
T ss_pred HHHhhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH---HhCCCEEEEeCcchhh-c-ccchHH---Hh--------hhCC
Confidence 344433 2789999999999999999966666655 4667889999999875 2 222211 22 1347
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||.+|++|+|+||++++ +.+.+.+......+..+++.|.++..++++. ++++..+.++++++.+.+
T Consensus 204 ~vi~~~S~SK~~~~~GlRiG~~v~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~~~~~~~~~~~r~~l~~ 277 (351)
T PRK14807 204 NLIVLRTLSKAFGLAGLRVGYAVAN-ENILKYLNLVKSPYNINSLSQVIALKVLRTG-----VLKERVNYILNERERLIK 277 (351)
T ss_pred CEEEEecchHhcccchhceeeeecC-HHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999995 5555556555545557889999999999753 245555677888888999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|.+. |+.+.+ .+|+|+|++++. ..+++..++ ++||.+.++.... ..++++||+++. +++.+.++
T Consensus 278 ~l~~~~g~~~~~-~~~~~~~i~~~~---------~~~~~~~l~-~~gV~v~~~~~~~-~~~~~iRis~~~--~~~~~~l~ 343 (351)
T PRK14807 278 ELSKIPGIKVYP-SKTNFILVKFKD---------ADYVYQGLL-ERGILVRDFSKVE-GLEGALRITVSS--CEANDYLI 343 (351)
T ss_pred HHHhCCCcEECc-CCccEEEEEcCC---------HHHHHHHHH-HCCEEEEECCCCC-CCCCeEEEEcCC--HHHHHHHH
Confidence 99876 777654 456789998862 134666665 6799998765322 235799999984 67777888
Q ss_pred HHHHHH
Q 044773 242 QRLKAF 247 (289)
Q Consensus 242 ~~l~~~ 247 (289)
+.|+++
T Consensus 344 ~~l~~~ 349 (351)
T PRK14807 344 NGLKEL 349 (351)
T ss_pred HHHHHh
Confidence 777664
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=210.07 Aligned_cols=206 Identities=17% Similarity=0.301 Sum_probs=155.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+.++++++|||||||.+++.+++++|++.++ ++++|+||+|.++ .+.. ...... ..+++++++||
T Consensus 144 ~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~--~~~~---~~~~~~--------~~~~~i~~~S~ 208 (353)
T PRK05387 144 PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDF--GGES---AIPLID--------RYPNLLVVQTF 208 (353)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCccccc--CCcc---hHHHHh--------hCCCEEEEEeh
Confidence 4578999999999999999999999987643 8999999999864 3322 122222 33678999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccc---cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
||.+|++|+|+||+++++ .+.+.+..... .+..+.+.|.++..++.+.. +.++.++.++++++.+.+.|+++
T Consensus 209 SK~~~~~GlR~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~ 283 (353)
T PRK05387 209 SKSRSLAGLRVGFAIGHP-ELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEA----YFEETRAKVIATRERLVEELEAL 283 (353)
T ss_pred hHhhcchhhhceeeecCH-HHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999954 45555444432 23467899999999997643 45677888899999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+.+. +.+++|+|++++.. +..++++.|. ++||.+.+... ...++++||+++ ++++++.++++|+++
T Consensus 284 g~~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~~--~~~~~~iRis~~--~~~~~~~~~~~L~~~ 350 (353)
T PRK05387 284 GFEVL-PSKANFVFARHPSH-------DAAELAAKLR-ERGIIVRHFNK--PRIDQFLRITIG--TDEEMEALVDALKEI 350 (353)
T ss_pred CCeEC-CCcCcEEEEECCCC-------CHHHHHHHHH-HCCEEEEECCC--CCCCCeEEEEeC--CHHHHHHHHHHHHHH
Confidence 88765 55677899987631 2246777775 67999975322 123679999997 479999999999887
Q ss_pred HH
Q 044773 248 VD 249 (289)
Q Consensus 248 l~ 249 (289)
+.
T Consensus 351 ~~ 352 (353)
T PRK05387 351 LA 352 (353)
T ss_pred hh
Confidence 64
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=208.22 Aligned_cols=205 Identities=20% Similarity=0.343 Sum_probs=161.2
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++++|+||||.+++.+++.++++.++ +++++|+||+|.++...+ +...... ..+++++++
T Consensus 140 ~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~----~~~~~~~--------~~~~~i~~~ 206 (346)
T TIGR01141 140 DDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP----STLPLLA--------EYPNLIVLR 206 (346)
T ss_pred CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc----cHHHHHh--------hCCCEEEEe
Confidence 457899999999999999999888888888877 799999999998654321 1122221 235689999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|+||.+|++|+|+||++++ +.+.+.+......+..+++.|.++..++.... +.++.+++++++++++.+.|+++
T Consensus 207 S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~ 281 (346)
T TIGR01141 207 TLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLP 281 (346)
T ss_pred hhhHhhhchhhhceeeecC-HHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999899999999995 45555565554445578899999999988743 57788899999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
|+++. +.+|+|+|++++. + ..++...|. ++||.+.||..|+.. ++++|++++ ++++++++++.|
T Consensus 282 g~~~~-~~~g~~~~~~~~~--~------~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l 345 (346)
T TIGR01141 282 GLEVY-PSDANFVLIRFPR--D------ADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAAL 345 (346)
T ss_pred CCEEC-CCcCCEEEEecCC--C------HHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHh
Confidence 88755 4456899998874 2 245777766 679999999988644 789999987 688999988776
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=209.91 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=153.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++.++++.+ ++++++|+||+|.++.+.+....++... +..+++++++|
T Consensus 144 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~---------~~~~~vi~~~S 213 (352)
T PRK03321 144 DRTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELV---------RDHPNVVVLRT 213 (352)
T ss_pred cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHH---------hhCCCEEEEec
Confidence 4789999999999999999988777777765 3699999999999886654332222222 23478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.||++|+|+||++++ +.+.+.+.+.......|++.|.++..++... ..+.+.. +.+.++++.+.+.|++.|+
T Consensus 214 ~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~---~~~~~~~-~~~~~~r~~~~~~L~~~~~ 288 (352)
T PRK03321 214 FSKAYGLAGLRVGYAVGH-PEVIAALRKVAVPFSVNSLAQAAAIASLAAE---DELLERV-DAVVAERDRVRAALRAAGW 288 (352)
T ss_pred chHHhhhHHHhhhhhcCC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHH-HHHHHHHHHHHHHHHHCCC
Confidence 999999999999999996 5555555555444558889999888888753 3333333 3444556779999988887
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
.+.+ .+|+|+|++++.. ..+++..| +++||.+.| |+ ..++||+++ +.++.+.++++|.++++
T Consensus 289 ~~~~-~~g~~i~i~l~~~--------~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 289 TVPP-SQANFVWLPLGER--------TADFAAAA-AEAGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred ccCC-CCCCEEEEeCCCC--------HHHHHHHH-HHCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 7544 4578999988531 24577776 478999987 43 346999996 58999999999988653
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=200.89 Aligned_cols=197 Identities=16% Similarity=0.275 Sum_probs=145.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++.+++ ++++++|+||+|.++. +. +...... ..+++++++|
T Consensus 139 ~~~~~v~~~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~--~~---~~~~~~~--------~~~~vi~l~S 201 (337)
T PRK03967 139 KNASAVFICSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFS--GK---SLIGLID--------EYPNLILLRT 201 (337)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhc--cc---chHHHHh--------hCCCEEEEec
Confidence 5688999999999999999976666554 4699999999999753 21 2222222 3367999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||.||++|+|+||+++++ .+.+.+......+..+.+.|.++..++++.+ +..+.++.+.++++.+.+.|.+.
T Consensus 202 ~SK~~~l~GlRiG~iv~~~-~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~-- 274 (337)
T PRK03967 202 FSKAFGLAGIRAGYAIANE-EIIDALYRIKPPFSLNILTMKIVRLALDHYD----LIEERIDYIIKERERVRRELGEY-- 274 (337)
T ss_pred chHhhcchhhhheeeecCH-HHHHHHHhhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHhccC--
Confidence 9999999999999999964 4555555554455578899999999998643 34555555667778888888764
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..+.+++|+|++++ +...|+ ++||.+.++.. ...+++||+++. +++.+++++.|..+.+
T Consensus 275 --~~~~~~~~~~~~~~-------------~~~~l~-~~gi~v~~~~~---~~~~~~Ri~~~~--~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 275 --AYPSDANFLLLKLD-------------AYDYLL-ENGIVVRKLSG---RLEGHIRVTVGK--REENDEFIKALKEIKE 333 (337)
T ss_pred --cCCCCCcEEEEhHH-------------HHHHHH-HCCEEEEeCCC---CCCCeEEEecCC--HHHHHHHHHHHHHHHH
Confidence 34677899998763 445555 56999987653 235799999984 6777888888877766
Q ss_pred HH
Q 044773 250 SI 251 (289)
Q Consensus 250 ~~ 251 (289)
.+
T Consensus 334 ~~ 335 (337)
T PRK03967 334 GY 335 (337)
T ss_pred hc
Confidence 54
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=197.19 Aligned_cols=218 Identities=27% Similarity=0.488 Sum_probs=174.7
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++|++++|+||||.+++.+++++|+++|+++|+++|+|++|+++.+.+......... +..+.++++
T Consensus 129 ~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 199 (350)
T cd00609 129 KTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALL---------DAYERVIVL 199 (350)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCc---------CccCcEEEE
Confidence 34689999999999999999999999999999999999999999999876654432111111 355778999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+|++|.++.+|.++||++++++.+.+.+...... +..+...+.++..+++... ++.++.++.++++++++.+.|+
T Consensus 200 ~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~ 276 (350)
T cd00609 200 RSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE---EHLEELRERYRRRRDALLEALK 276 (350)
T ss_pred eecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999764666666554433 4577788999999988752 5678888999999999999999
Q ss_pred hcCCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 166 KAGISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
+.+... ..+.+|+++|++++.... .+...+++.++||.+.++..|......++|++++.. .++++.++++|
T Consensus 277 ~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al 348 (350)
T cd00609 277 ELGPLVVVKPSGGFFLWLDLPEGDD-------EEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERL 348 (350)
T ss_pred hcCCccccCCCccEEEEEecCCCCh-------HHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHh
Confidence 985443 567788999999876411 245666777889999999888755678999999875 99999999988
Q ss_pred H
Q 044773 245 K 245 (289)
Q Consensus 245 ~ 245 (289)
+
T Consensus 349 ~ 349 (350)
T cd00609 349 A 349 (350)
T ss_pred h
Confidence 5
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=179.23 Aligned_cols=228 Identities=19% Similarity=0.275 Sum_probs=178.3
Q ss_pred HhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
.++...++.+|+++-|.||||.+++.+++.+|-.++++||+.+|.|.+|..- |.+-.+..+.-+ ..+++
T Consensus 173 ~l~i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~~~~----------w~~Ni 241 (417)
T COG3977 173 HLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDATPL----------WNENI 241 (417)
T ss_pred HcccccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceeccccccc----------CCCCE
Confidence 3455568899999999999999999999999999999999999999999743 444433332222 45889
Q ss_pred EEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCC--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 85 HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 85 i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+.+.|+|| +|+||.|+|.+++ ++.+.+.+..++.... ++...++.++.+++.+.++.-.-+-.+-.|+++.+...+
T Consensus 242 ilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~ 319 (417)
T COG3977 242 ILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIA 319 (417)
T ss_pred EEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999 7899999999999 6778888887766533 556899999999999987332233355677777777777
Q ss_pred HHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCeEEEEEec
Q 044773 163 GLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-------PGWFRVCFAN 231 (289)
Q Consensus 163 ~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-------~~~~Ris~~~ 231 (289)
.|++. .+.+..|+|..|+|+=+.+..-. ..++...| ++.|+.++||..|.+.- ..++|+++.
T Consensus 320 ~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPIt-----t~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~- 392 (417)
T COG3977 320 ILRRYLPEYRCLIHKPEGAIFLWLWFKDLPIT-----TEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV- 392 (417)
T ss_pred HHHHhcCccceeeecCCcceeehhhhccCCCC-----HHHHHHHH-HhCeEEEecccccCCCCCCCCCCccceEEEecC-
Confidence 77654 57788999999999877664322 24566665 57799999999998622 368999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.++++++.++.+|++.+++.-
T Consensus 393 ~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 393 PEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999888754
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=181.31 Aligned_cols=245 Identities=20% Similarity=0.289 Sum_probs=182.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCC-
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTE- 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d- 79 (289)
++++. ++-+++++++.||.||||++++++.+++|+.+|++++++++.||+|++..|.. ..+.++...+-++. ...
T Consensus 207 ~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg--~~~~ 283 (475)
T KOG0258|consen 207 VDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMG--NPYP 283 (475)
T ss_pred HHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhc--CccC
Confidence 45666 55689999999999999999999999999999999999999999999988874 48899988887761 011
Q ss_pred CCCceEEEecCcccc-CCCCceEEEEEe--cCHHHHHHHHhccc-cCCCChHHHHHHHHHhC-----CchH--HHHHHHH
Q 044773 80 VWNRVHIVYSLSKDL-GLPGFRVGAIYS--NDDTVVAAATKMSS-FGLVSSQTQYLLSALLS-----DKKF--AQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~-g~~G~r~G~i~~--~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~-----~~~~--~~~~~~~ 148 (289)
+.-.++.++|.||.+ |-+|.|-||+-. .++...+.+.+... -.+.+...|..+..... +..+ .......
T Consensus 284 ~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~ 363 (475)
T KOG0258|consen 284 DNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDG 363 (475)
T ss_pred CceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHh
Confidence 123356788999988 678999999864 23444444444433 34345566766666655 2233 1333455
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCC-
Q 044773 149 NKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCT- 220 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~- 220 (289)
....++.+.+.+.+.++++ |++|.+++|.||++.++.-+..+ .....+.-++..||++.||.++||++||..
T Consensus 364 il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~ 443 (475)
T KOG0258|consen 364 ILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKE 443 (475)
T ss_pred HHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCC
Confidence 6778889999999999988 99999999999998776543221 222334458999999999999999999984
Q ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+..++|.++.. +. + +.+++++++..+..+
T Consensus 444 GtyH~R~TiLp--~~-~-~~i~~~~~fH~~f~~ 472 (475)
T KOG0258|consen 444 GTYHFRTTILP--PG-L-EIIEKFKKFHAEFMD 472 (475)
T ss_pred ceeEEEEeecC--ch-h-HHHHHHHHHHHHHHH
Confidence 45689999963 22 5 888888888776644
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=181.76 Aligned_cols=206 Identities=14% Similarity=0.134 Sum_probs=149.0
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|+++ ++||+|.+++.+++++|+++|+++++++|+||+|.....+.....+.... +..++++
T Consensus 134 ~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~------------~~divv~ 200 (346)
T TIGR03576 134 IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDL------------GADLVVT 200 (346)
T ss_pred CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHc------------CCcEEEe
Confidence 3467887775 57999999999999999999999999999999998653321111122211 2236788
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||+ ++|+|.||+++++ .+++.+..... +. +.+++.|.++..+|+... .+..++.++++.+.+.+.+++
T Consensus 201 s~SKa--laG~r~G~v~~~~-~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~-----~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 201 STDKL--MDGPRGGLLAGRK-ELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE-----LSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred ccchh--ccccceEEEEeCH-HHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHHHHHHHHh
Confidence 99994 5889999999965 45555554433 22 257788888888886532 245678899998888888875
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHH---HHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED---TLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e---~l~~~l~~ 243 (289)
+.+.++.++ |+|++++.. +..+++..+++++||.++||..|. ..++|+||+++. +++ +.+.+++.
T Consensus 273 --~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~vRis~~~-~~~~~~~~~~~~~a 340 (346)
T TIGR03576 273 --LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKTLRFDLAA-KDAERIGDDYLVEA 340 (346)
T ss_pred --CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCeEEEEEec-ChHHhcCHHHHHHH
Confidence 555555555 788988642 113577788889999999999884 346799999985 444 68888888
Q ss_pred HHHH
Q 044773 244 LKAF 247 (289)
Q Consensus 244 l~~~ 247 (289)
|++-
T Consensus 341 l~~~ 344 (346)
T TIGR03576 341 VKDS 344 (346)
T ss_pred HHhc
Confidence 8653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=175.59 Aligned_cols=235 Identities=17% Similarity=0.189 Sum_probs=162.0
Q ss_pred hHHHhhhCCCccEEEEeCC--CCCCccCCCHHHHHHHHHHH-HHcCCEEEEecCCCCCccCCC-C---ccChhhhhhccc
Q 044773 2 YQLAQKRHLKVKGVLVTNP--SNPLGTTMSRNELNLLVNFI-TEKNIHLISDEIYSGTVFSSP-G---FVSIMEILKDRN 74 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~-~~~~~~li~Dea~~~~~~~~~-~---~~~~~~~~~~~~ 74 (289)
+|++..+++.+|.| +|.| +||||.++|.+..++|+.+- .+.++.|+.|++|.-+.+.+. . ..++.+.+.+
T Consensus 163 Ve~LV~~D~svKGi-WcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~-- 239 (425)
T PF12897_consen 163 VEELVAEDPSVKGI-WCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAK-- 239 (425)
T ss_dssp HHHHTHTSTTEEEE-EE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHH--
T ss_pred HHHHHhcCCccceE-EeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHH--
Confidence 68888889999995 5557 89999999999999999984 457999999999987767432 1 1355555443
Q ss_pred cccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc-CCCChHHHHHHHHHhCCch-HHHHHHHHHHHH
Q 044773 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-GLVSSQTQYLLSALLSDKK-FAQNYISENKKR 152 (289)
Q Consensus 75 ~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~ 152 (289)
.+..++++.+.|+||+.. +|..++++.++.+.+....+.+... ....-++|..-++++++.+ -+..++++.++.
T Consensus 240 ---AGnpdrv~~F~STSKITf-~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~i 315 (425)
T PF12897_consen 240 ---AGNPDRVYVFASTSKITF-PGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAI 315 (425)
T ss_dssp ---TT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHH
T ss_pred ---cCCCCeEEEEeccccccc-CCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 357799999999999885 9999999999877777766655432 2356699999999999865 558999999999
Q ss_pred HHHHHHHHHHHHHhc-C-----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCC---CCC
Q 044773 153 LKQRHRKLVSGLEKA-G-----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEP 222 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g-----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~ 222 (289)
++-+.+.+.+.|++. | .+|..|.||||+++++.+...+ -...++++.||.+.| |+.|.. +.+
T Consensus 316 l~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~Ak--------rvV~lakeAGV~LT~AGAtfPyg~DP~D 387 (425)
T PF12897_consen 316 LRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTAK--------RVVELAKEAGVALTPAGATFPYGKDPRD 387 (425)
T ss_dssp HHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-HH--------HHHHHHHHTTEE---TTTTSGGG--TTS
T ss_pred HhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChHH--------HHHHHHHHhCceeCCCCCCCCCCCCCCC
Confidence 999999988888765 3 4899999999999999986543 445567788999998 555532 235
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..|||+++.++.||++.+++.+.-+++-.
T Consensus 388 ~nIRiAPS~P~leel~~Am~~~~~cv~la 416 (425)
T PF12897_consen 388 SNIRIAPSYPSLEELETAMDVFATCVKLA 416 (425)
T ss_dssp -EEEE--SSS-HHHHHHHHHHHHHHHHHH
T ss_pred CcEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999889999999999998876643
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=163.29 Aligned_cols=222 Identities=19% Similarity=0.271 Sum_probs=169.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+-+.++.++.+|++++++|+||||..++.+++++|++.-. |.+|++||+|-++ .| ..+-..+.. .+
T Consensus 151 i~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidF--sg--~~S~~~lV~--------kY 216 (375)
T KOG0633|consen 151 IAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDF--SG--VESRMKLVK--------KY 216 (375)
T ss_pred HHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEee--cc--ccccchHhH--------hC
Confidence 4567788889999999999999999999999999987533 7999999999874 33 234445655 55
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
.+++++.+|||+||+.|+|+||-.. +..++..+.+.....+.|.+...++..++.+.+ ...++..+..+-+.+.++.
T Consensus 217 pNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~ 293 (375)
T KOG0633|consen 217 PNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLF 293 (375)
T ss_pred CceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 466788888877666688888888888888654 4557888888888889999
Q ss_pred HHHHhc-CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 162 SGLEKA-GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 162 ~~l~~~-g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
..|.+. ++. +.++....|+.+++....+. -+-+...+++.+.||.|+ -|+--+ -.|++||+.+ ++|+-.
T Consensus 294 keLt~v~~~~~~~gg~daNFiLi~v~~~~n~----~akkly~q~at~~gVvVRfrgse~~--c~G~lRitvG--t~Eent 365 (375)
T KOG0633|consen 294 KELTEVPFLNDYPGGSDANFILIEVTGGDNG----MAKKLYKQDATKMGVVVRFRGSEEG--CKGYLRITVG--TPEENT 365 (375)
T ss_pred HHhhcCccccCCCCcccccEEEEEEcCCCcH----HHHHHHHHHHHhcceEEEEcCCccc--cceeEEEEcC--Ccccch
Confidence 999987 332 33344456777887754322 123466677788999987 222222 2689999998 478888
Q ss_pred HHHHHHHHHH
Q 044773 239 LSMQRLKAFV 248 (289)
Q Consensus 239 ~~l~~l~~~l 248 (289)
.+++.+++++
T Consensus 366 vL~k~~K~~l 375 (375)
T KOG0633|consen 366 VLMKCLKQFL 375 (375)
T ss_pred HHHHHHHhhC
Confidence 8999988763
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=181.01 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=153.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++++++|+||+|....++ .....+.+..+- ..+.+++++|
T Consensus 177 ~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g-~~g~g~~~~~~~-------~~~~div~~t 245 (410)
T PRK13392 177 DRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYG-ARGGGIAERDGL-------MDRIDMIQGT 245 (410)
T ss_pred CCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcC-CCCCchhhhccC-------CCCCcEEEEE
Confidence 46899999999999999998 899999999999999999999843332 222222222110 1123488899
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc-c--C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-F--G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~--~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
|||++|++| ||++++ +.+.+.+..... + . ..+++.+.++.++|+... .....++.++++++++.+.|+
T Consensus 246 lsK~~g~~G---G~~~~~-~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~----~~~~~~~~~~~~~~~l~~~L~ 317 (410)
T PRK13392 246 LAKAFGCLG---GYIAAS-ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLK----TSQTERDAHQDRVAALKAKLN 317 (410)
T ss_pred ChHhhhccc---chhhcC-HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHH
Confidence 999999888 999985 455555544332 1 1 144466777777776422 223455778899999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSEDTLKLSMQR 243 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e~l~~~l~~ 243 (289)
+.|+++.+++++++. +.++.. ....+++..|++++||.+.++..... .+..++||++. .+++++++.+++.
T Consensus 318 ~~g~~~~~~~~~~~~-i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~a 390 (410)
T PRK13392 318 ANGIPVMPSPSHIVP-VMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAA 390 (410)
T ss_pred HcCCCCCCCCCCEEE-EEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 989888777776542 333321 12246888887778999998755432 24578999994 3699999999999
Q ss_pred HHHHHHHHH
Q 044773 244 LKAFVDSIT 252 (289)
Q Consensus 244 l~~~l~~~~ 252 (289)
|.+++++..
T Consensus 391 L~~~~~~~~ 399 (410)
T PRK13392 391 LVAIWDRLE 399 (410)
T ss_pred HHHHHHHcC
Confidence 999876643
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=179.46 Aligned_cols=210 Identities=19% Similarity=0.153 Sum_probs=143.3
Q ss_pred CCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++++||+| .+++.+.+++|.++|+++++++|+||+|.++.+++.. .+. +... .. ..+.
T Consensus 181 ~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~-~~~~--------~~---pdi~ 247 (396)
T PRK02627 181 DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAY-QHYG--------IE---PDIM 247 (396)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eee-hhcC--------CC---CCEE
Confidence 4789989988899999 7889999999999999999999999999987665532 121 1111 11 1145
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++ +|+|+||++++++ +.+.+.. ....+..+++.|.++.++++.... ++..+..++..+..++.+.+.+.+
T Consensus 248 t~sK~~~-~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 324 (396)
T PRK02627 248 TLAKGLG-GGVPIGAVLAKEK-VADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEK 324 (396)
T ss_pred EEcchhh-CCcccEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999 9999999999654 5554442 222344788999998888874432 222333333333333334444333
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~~l~ 245 (289)
++........|.++|+++.. +..+++..++++ ||.+.|+. .+++||+++ .++++++++++++|.
T Consensus 325 ~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~ 389 (396)
T PRK02627 325 YPGIKEVRGLGLMIGIELDR--------PAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIISKEEIDEAVDRLE 389 (396)
T ss_pred CCCeeeeccCcEEEEEEecC--------cHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccCHHHHHHHHHHHH
Confidence 32211222346788888732 124688888755 99999863 367999985 369999999999999
Q ss_pred HHHHH
Q 044773 246 AFVDS 250 (289)
Q Consensus 246 ~~l~~ 250 (289)
+++++
T Consensus 390 ~~l~~ 394 (396)
T PRK02627 390 EVLKE 394 (396)
T ss_pred HHHHh
Confidence 98865
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=179.67 Aligned_cols=224 Identities=15% Similarity=0.117 Sum_probs=152.6
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++++.. +++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...++ +....+.+..+-
T Consensus 167 le~~l~~~~~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g-~~g~g~~~~~~~------- 235 (407)
T PRK09064 167 LEELLAAADPDRPKLIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYG-PRGGGIAERDGL------- 235 (407)
T ss_pred HHHHHHhccCCCCeEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccC-CCCCChHHhcCC-------
Confidence 34555432 36789999999999999998 999999999999999999999832232 222222222110
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccC---CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFG---LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+.+++++||||++|+.| ||+++++ .+.+.+... ..+. ..++..+.++.+.++ ++.. ....++++++
T Consensus 236 ~~~~div~~t~sKa~g~~G---G~~~~~~-~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~---~~~~-~~~~~~~~~~ 307 (407)
T PRK09064 236 MDRIDIIEGTLAKAFGVMG---GYIAGSA-ALVDAVRSYAPGFIFTTSLPPAIAAAALASIR---HLKE-SNEERERHQE 307 (407)
T ss_pred CCCCeEEEEecchhhhccC---ceEecCH-HHHHHHHHhCccccccCcCCHHHHHHHHHHHH---HHhc-CHHHHHHHHH
Confidence 1234788999999999888 9999854 455544433 2221 234444444444443 2222 2344678889
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+++++.+.|++.|+++.++.++ ++++.++.. ....++...|++++||.+.+...+.. .+..++||+++. ++
T Consensus 308 ~~~~l~~~L~~~g~~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t 380 (407)
T PRK09064 308 RAAKLKAALDAAGIPVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHT 380 (407)
T ss_pred HHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCC
Confidence 9999999999988887766655 445555431 12346788887778999998654432 234689999954 79
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~ 251 (289)
++|++.+++.|++++++.
T Consensus 381 ~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 381 DEMIDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999987654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=177.20 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=153.6
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... +++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...+ ++......+..+ -
T Consensus 166 l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~~-------~ 234 (402)
T TIGR01821 166 LEKLLQSVDPNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERDG-------L 234 (402)
T ss_pred HHHHHHhccCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhcc-------C
Confidence 34555432 25789999999999999998 89999999999999999999983323 222222222111 0
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+.+++++||||++|++| ||+++++ .+.+.+.... .+ ...++..+.++.+.++.. .+. ...++.+++
T Consensus 235 ~~~~div~~t~sKa~g~~G---G~i~~~~-~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~ 306 (402)
T TIGR01821 235 MHRIDIIEGTLAKAFGVVG---GYIAASR-KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQE 306 (402)
T ss_pred CCCCeEEEEechhhhccCC---ceeecCH-HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHH
Confidence 1234688899999999888 9999854 4555554322 21 124556666666666532 222 445566778
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+.+++.+.|+++|+++.++.+++ +.+.++.. ....++...|++++||.+.+..+... .+..++||++.. ++
T Consensus 307 ~~~~l~~~L~~~g~~~~~~~~~i-~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t 379 (402)
T TIGR01821 307 NVKRLKNLLEALGIPVIPNPSHI-VPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHT 379 (402)
T ss_pred HHHHHHHHHHHcCCCcCCCCCCE-EEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCC
Confidence 88999999998888877777664 44555421 12245777777778999988654432 234689999943 79
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++.|++++++.
T Consensus 380 ~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 380 DKMIDDLVEALLLVWDRL 397 (402)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999988764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=179.30 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=158.7
Q ss_pred Cc-cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KV-KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~-~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++ ++|+++.++|++|.+.+ +++|+++|++||+++|+||+|+...++ .......+..+- +..+.+++++|
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG-~~G~G~~e~~~v------~~~~~dii~~s 313 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLG-KSGRGLSEHFGV------PIEKIDIITAA 313 (481)
T ss_pred CCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCChHHHcCC------CCCCCeEEEec
Confidence 44 68788888999999999 899999999999999999999955453 222333443220 12356789999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc-ccc-CCC--ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF-GLV--SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~-~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
|||++|++| ||++++++ +.+..... ..+ ++. ++..+.++.++++.. +. ..+.++.++++.+++.+.|+
T Consensus 314 ~sKalg~~G---G~i~g~~~-ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l---~~-~~~~~~~l~~~~~~l~~~L~ 385 (481)
T PLN02822 314 MGHALATEG---GFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---ED-NPSVLAKLKENIALLHKGLS 385 (481)
T ss_pred chhhhhhCC---eEEEcCHH-HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH---Hh-CHHHHHHHHHHHHHHHHHHH
Confidence 999999889 99999654 44444432 222 222 345556655566421 22 35678899999999999999
Q ss_pred hc-CCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCC--CCCC-CCCCeEEEEEec-CCHHHHH
Q 044773 166 KA-GISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGS--SCHC-TEPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 166 ~~-g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~--~f~~-~~~~~~Ris~~~-~~~e~l~ 238 (289)
+. |+.+..+.+++++++.+++.... .......+++..|++++||.+.|+. .|+. ..+.++|++++. +++++++
T Consensus 386 ~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~ 465 (481)
T PLN02822 386 DIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDIL 465 (481)
T ss_pred hcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHH
Confidence 87 88888778889999998643111 0001124688899878899999763 3332 124579999853 7999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSIT 252 (289)
Q Consensus 239 ~~l~~l~~~l~~~~ 252 (289)
+++++|++++.+..
T Consensus 466 ~~~~~l~~~~~~~~ 479 (481)
T PLN02822 466 KASESLKRVAASVL 479 (481)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887754
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=173.71 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=150.2
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++.++.. ++++++++++++||||...+ +++|.++|+++++++|+||+|....++.. ..+...... .+
T Consensus 135 l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~------~~ 204 (360)
T TIGR00858 135 LERLLEKNRGERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGED-GRGTLEHFG------LK 204 (360)
T ss_pred HHHHHHHcccCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCC-CCchHHhcC------CC
Confidence 34555543 35788888888999999888 89999999999999999999985444322 122222211 02
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-cccc--C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSF--G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~--~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+++++++||||++|.+| ||++++++ +.+.+.. ...+ . ..++..+.++..+++.. ...++.++++++
T Consensus 205 ~~~~~i~i~s~sK~~~~~g---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~ 276 (360)
T TIGR00858 205 PEPVDIQVGTLSKALGSYG---AYVAGSQA-LIDYLINRARTLIFSTALPPAVAAAALAALELI----QEEPWRREKLLA 276 (360)
T ss_pred ccCCcEEEEechhhhhccC---cEEEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHH
Confidence 3467899999999999777 99998644 4444432 2221 1 13444444555555422 223566889999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+++++.+.|++.++++.++ ++.++|+.++... +..++...|+ ++||.+.++..++. .+.+++||+++. ++
T Consensus 277 ~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~ 348 (360)
T TIGR00858 277 LIARLRAGLEALGFTLMPS-CTPIVPVIIGDNA------SALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHT 348 (360)
T ss_pred HHHHHHHHHHHcCCccCCC-CCCEEEEEeCCHH------HHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCC
Confidence 9999999999888776644 4568888876421 2346777776 66999998776643 235689999964 69
Q ss_pred HHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLK 245 (289)
Q Consensus 234 ~e~l~~~l~~l~ 245 (289)
+++++.++++|+
T Consensus 349 ~~~i~~~l~~l~ 360 (360)
T TIGR00858 349 PGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHHhhC
Confidence 999999998874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=176.95 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=147.7
Q ss_pred CCccEEEEeCCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTM--SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~--~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|+++ |.||+|-++ +.+.+++|+++|++||+++|+||+|.++.++|... +. ... +...-+
T Consensus 183 ~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~-~~~-----------~~~pdi 248 (403)
T PRK05093 183 DHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AY-MHY-----------GVTPDI 248 (403)
T ss_pred CCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hh-hhc-----------CCCCCE
Confidence 357776666 878887665 88999999999999999999999999886666422 21 111 111226
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.||||+++ +|+|+||+++++ .+.+.+... ...+..+++.|.++.+.|+... -.+..+.++++.+++.+.|+
T Consensus 249 ~s~sK~l~-~G~rig~vv~~~-~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~-----~~~~~~~~~~~~~~l~~~L~ 321 (403)
T PRK05093 249 LTSAKALG-GGFPIGAMLTTA-EIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN-----TPEVLEGVKARRQRFVDGLQ 321 (403)
T ss_pred EEeccccc-CCcceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHH
Confidence 79999999 999999999965 444444321 2223468888988888665321 12445778888888999998
Q ss_pred hcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 166 KAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 166 ~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+++ +....+..|+++|+.++.... ....+++..++ +.||.+.|+ +.+++||+++. +++++++++
T Consensus 322 ~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~-~~Gv~v~~~------g~~~lRl~~~~~~~~~~i~~~ 390 (403)
T PRK05093 322 KINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAA-EEGVMVLVA------GPDVLRFAPSLVIEEADIDEG 390 (403)
T ss_pred HHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHH-HCCeEEecC------CCCEEEEeCCCCCCHHHHHHH
Confidence 763 222344568899998864211 12346888877 459999874 24689998754 599999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|.++++.
T Consensus 391 ~~~l~~~l~~ 400 (403)
T PRK05093 391 LARFEKAVAK 400 (403)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=176.49 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=159.2
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCC--CccC-----CCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSG--TVFS-----SPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~--~~~~-----~~~~~~~~~~~~ 71 (289)
+++++... +++++|++++|+|||| .+++.+++++|.++|+++|++||+|+++.. ..|. +....++.++.
T Consensus 166 Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~- 244 (460)
T PRK13238 166 LEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIA- 244 (460)
T ss_pred HHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHh-
Confidence 34555432 3699999999999997 999999999999999999999999997742 2221 22334444432
Q ss_pred ccccccCCCCCceEEEecCccccCCCCceE------EEEEecCHHHHHHHHhcc----c---cCCCChHHHHHHHHHhCC
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRV------GAIYSNDDTVVAAATKMS----S---FGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~------G~i~~~~~~~~~~~~~~~----~---~~~~~~~~q~~~~~~l~~ 138 (289)
..++|++|.+.++|+|+ |+++++++.+.+.++... + ++..+...|.+++..+.+
T Consensus 245 -------------~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e 311 (460)
T PRK13238 245 -------------REMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYE 311 (460)
T ss_pred -------------hhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHH
Confidence 22344444444444443 566666566666555442 2 222233457777776654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
..- +++...+.+ ++++|.+.|.+.|+++..|.||+|+++++...... ..-....+++..|+++.||.+.|++.
T Consensus 312 ~~~-~~~~~~~~~----~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~ 386 (460)
T PRK13238 312 GMD-EDYLAYRIG----QVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGS 386 (460)
T ss_pred hhC-hHHHHHHHH----HHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccc
Confidence 211 333444322 56889999999999999999999999999764221 01112367999999999999999998
Q ss_pred CCCCC-----------CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTE-----------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 217 f~~~~-----------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
|.... ...+|+++.. -+.++++.+.++|+.+.+....
T Consensus 387 f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~~ 436 (460)
T PRK13238 387 LLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENRES 436 (460)
T ss_pred eecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhHhh
Confidence 86422 3689999964 4899999999999997755443
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=175.44 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=149.4
Q ss_pred cEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 13 KGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 13 ~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
++++++++ .|++|.+.+ +++|+++|+++++++|+||+|+...+ +.......++.+. +..+.+++++|||
T Consensus 241 k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~-G~~G~g~~~~~~v------~~~~~dI~~~SfS 310 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAV-GKTGRGVCELLGV------DPADVDIMMGTFT 310 (489)
T ss_pred eEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCcc-CCCCCchHHhcCC------CcccCcEEEEecc
Confidence 66777776 699999988 99999999999999999999984323 3322233333221 3456789999999
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhcc-c--cC-CCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMS-S--FG-LVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~-~--~~-~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|++|++| ||+++++ .+.+.+.... . +. ..++....++.+.++ ..+- .+...+.++.++++++++++.|
T Consensus 311 Ks~g~~G---G~i~~~~-~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g-~~~~~~~~~~l~~~~~~l~~~L 385 (489)
T PLN02483 311 KSFGSCG---GYIAGSK-ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG-TNRGAQKLAQIRENSNFFRSEL 385 (489)
T ss_pred hhcccCc---eEEEcCH-HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHHHHHHHHHH
Confidence 9999888 9999854 4555554432 1 22 123322223333332 1110 1234556788999999999999
Q ss_pred HhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC--CCCCCeEEEEEec-CCHHHHHHHH
Q 044773 165 EKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH--CTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 165 ~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+++|+.+.++.+++.+|+.+.... ...+++..|+ ++||.+.| ..|. +...+.+||+++. ++++++++++
T Consensus 386 ~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l 457 (489)
T PLN02483 386 QKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRECL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKAL 457 (489)
T ss_pred HHCCCcccCCCCCCEEEEEECCHH------HHHHHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHH
Confidence 999988777666667766654322 1235888887 56999997 4442 2334789999964 7999999999
Q ss_pred HHHHHHHHHHHH
Q 044773 242 QRLKAFVDSITT 253 (289)
Q Consensus 242 ~~l~~~l~~~~~ 253 (289)
++|+++.+....
T Consensus 458 ~~L~~~~~~~~~ 469 (489)
T PLN02483 458 EVISEVGDLVGI 469 (489)
T ss_pred HHHHHHHHHhCc
Confidence 999999876544
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=171.24 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=143.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++.+++||||.+.+ +++|+++|+++|+++|+||+|... +.+....+..+...- ..+.+++++|+
T Consensus 170 ~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g-~~~~~~~~~~~~~~~-------~~~~di~~~s~ 238 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATG-FLGPTGRGSHELCGV-------MGRVDIITGTL 238 (393)
T ss_pred CceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCcccc-CcCCCCCchHHhcCC-------CCCCeEEEEEC
Confidence 6788888888999999988 899999999999999999999632 323222222222210 12467899999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhc-ccc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||+++ |+|.||+++++ .+.+.+... ..+ .. .++..+.++..+++ . .+..++.+++++++++++.+.|++
T Consensus 239 sK~l~--g~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~---~-~~~~~~~~~~~~~~~~~l~~~L~~ 311 (393)
T TIGR01822 239 GKALG--GASGGFTTARK-EVVELLRQRSRPYLFSNSLPPAVVGASIKVLE---M-LEASNELRDRLWANTRYFRERMEA 311 (393)
T ss_pred hHHhh--CCCcEEEEeCH-HHHHHHHHhCccceecCCCCHHHHHHHHHHHH---H-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99974 57899999964 444444332 222 11 22333333344442 2 123466788899999999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
.|+.+.++.+. ++.+.++.. .+..+++..|++ .||.+. +..|.. .+...+|++++. ++++++++++++
T Consensus 312 ~g~~~~~~~~~-~~~i~~~~~------~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~ 382 (393)
T TIGR01822 312 AGFDIKPADHP-IIPVMLYDA------VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEA 382 (393)
T ss_pred cCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 88877655554 333444432 123467887774 499997 554532 234579999954 689999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|.++.++.
T Consensus 383 l~~~~~~~ 390 (393)
T TIGR01822 383 FTRIGREL 390 (393)
T ss_pred HHHHHHHh
Confidence 99887643
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=171.83 Aligned_cols=208 Identities=18% Similarity=0.190 Sum_probs=141.0
Q ss_pred CCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++.++||+| .+++.+++++|.++|+++|+++|+||+|.++.+++..+. . +.. +...-+.
T Consensus 174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~-~-~~~-----------~~~pdi~ 240 (389)
T PRK01278 174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFA-H-EWA-----------GVTPDIM 240 (389)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccee-e-ccc-----------CCCCCEE
Confidence 3688888886688998 889999999999999999999999999998766554221 1 111 1111256
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD---KKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
||||.++ +|+|+||++++++ +.+.+.... ..+..|++.|.++.+.++. .++ .++.+++.+.++++.+.+.+.
T Consensus 241 t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~ 317 (389)
T PRK01278 241 AVAKGIG-GGFPLGACLATEE-AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-LDNVQRMGLYLKQKLEGLVDR 317 (389)
T ss_pred EEehhcc-CCcceEEEEEcHH-HHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 8999998 9999999999654 444443322 2233778888888666653 222 344455555555554444322
Q ss_pred HHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
+.+. +....+ .|+++++++.. + ..+++..|+++ ||.+.|+. .+++||+++. +++++++++++
T Consensus 318 ~~~~-~~~v~g-~G~~~~i~~~~--~------~~~~~~~l~~~-GV~~~p~~------~~~lR~~p~~~~~~~~i~~~l~ 380 (389)
T PRK01278 318 FPDV-IEEVRG-KGLLLGLKCVV--P------NRDLVQALRDE-GLLTVGAG------DNVVRLLPPLIITEEEIDEALE 380 (389)
T ss_pred CCCc-eeeEec-ccEEEEEEEec--C------HHHHHHHHHHC-CeEEeecC------CCEEEEeCCcccCHHHHHHHHH
Confidence 2111 222233 46777777643 1 24688888755 99999873 4689999853 69999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|.+++++
T Consensus 381 ~l~~~l~~ 388 (389)
T PRK01278 381 RLERAAES 388 (389)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=169.46 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=141.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|+..+.+||+|...+ +++|.++|+++++++|+||+|....+.... ........ . ..+.+++++||
T Consensus 174 ~~~~v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~-~~~~~~~~-~------~~~~~i~~~S~ 242 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENG-RGTVEHFG-V------MDRVDIITGTL 242 (397)
T ss_pred CCeEEEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCC-CCHHHHcC-C------CCCCcEEEEEC
Confidence 6777776667899998665 999999999999999999999632122111 11111111 0 12457999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhc-ccc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||+++ |.|.||++++++. .+.+... ..+ .. .++..+.++..+++.. . ...+.++.++++++++.+.|++
T Consensus 243 sK~~~--g~r~G~v~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~~ 315 (397)
T PRK06939 243 GKALG--GASGGYTAGRKEV-IDWLRQRSRPYLFSNSLAPAIVAASIKVLELL---E-ESDELRDRLWENARYFREGMTA 315 (397)
T ss_pred HHHhC--ccCceEEEeCHHH-HHHHHHhCccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHHH
Confidence 99994 4588999996554 4444332 211 11 2233334333333321 1 2356778899999999999998
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
.++++.++.++++. +.++.. .+..+++..|+++ ||.+.++. |+. .+.+++|++++. ++++++++++++
T Consensus 316 ~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~ 386 (397)
T PRK06939 316 AGFTLGPGEHPIIP-VMLGDA------KLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDA 386 (397)
T ss_pred cCCCcCCCCCCEEE-EEECCH------HHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 88877767676654 334321 1235688888755 99998654 432 234689999954 799999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|++++++.
T Consensus 387 L~~~~~~~ 394 (397)
T PRK06939 387 FEKVGKEL 394 (397)
T ss_pred HHHHHHHh
Confidence 99988765
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=166.75 Aligned_cols=208 Identities=15% Similarity=0.181 Sum_probs=136.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||+|...+ +++|.++|+++|+++|+|++|... ....+...+ +.+++++|+
T Consensus 146 ~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g----~~~~~~~~~------------~~di~v~s~ 206 (370)
T TIGR02539 146 PPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVG----RMPVSAKEI------------GADFIVGSG 206 (370)
T ss_pred CcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccC----CcCCCHHHc------------CCCEEEeeC
Confidence 6789999999999999888 888999999999999999999852 211122111 345778999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCC----------hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVS----------SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~----------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
||+++ +|.|+||+++++ .+.+.+......+..+ ...+.++...+.. ..+++++..+.++. .+++
T Consensus 207 sK~~~-~~g~~G~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~~~~~~~~-~~~l 280 (370)
T TIGR02539 207 HKSMA-ASGPCGVLGMSE-EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKRWDEEVKK-TRWF 280 (370)
T ss_pred ccccc-CCCCEEEEEECH-HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHH
Confidence 99998 677899999965 4455444433221111 1133333333432 13344444455555 4689
Q ss_pred HHHHHhcCCcee--cCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeE-EeCCCCCCCCCCCeEEEEEecCCHH
Q 044773 161 VSGLEKAGISCL--KSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLN-ISPGSSCHCTEPGWFRVCFANMSED 235 (289)
Q Consensus 161 ~~~l~~~g~~~~--~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~~Ris~~~~~~e 235 (289)
++.|+++|+++. .+..+.|++++++.... .........+...|. ++||. +.++ .++++|+++...+++
T Consensus 281 ~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~-e~GI~~ir~~------~~~~iRis~~~~t~e 353 (370)
T TIGR02539 281 VAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK-KRGIHGIRSG------QTKYFKLSVYGLTKE 353 (370)
T ss_pred HHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH-hCCCccccCC------cceEEEEEecCCCHH
Confidence 999999998753 34556777788763100 000011234566655 66997 5542 246899997335999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDS 250 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~ 250 (289)
++++++++|++++++
T Consensus 354 ~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 354 QVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=169.61 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=150.8
Q ss_pred CccEEEEeCC--CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP--SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| +|+++..++++.+++|+++|+++++++|+||+|.++.+.+.. .++ + ..+.+..+.
T Consensus 199 ~~aa-vi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~-~~~-~-----------~~~~~pdi~ 264 (425)
T PRK08088 199 DIAA-IIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTL-FAM-E-----------QMGVAADLT 264 (425)
T ss_pred ceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch-hHH-h-----------hcCCCCCEE
Confidence 4555 55556 688888899999999999999999999999999986554431 111 1 113345589
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++ +|+|+||+++++ .+.+.+... ...+..+++.|.++..+|+.... ++.++..++..+++++.+.+.+.+
T Consensus 265 s~sK~l~-~G~rig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~ 341 (425)
T PRK08088 265 TFAKSIA-GGFPLAGVTGRA-EVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEK 341 (425)
T ss_pred EEecccc-CCCcceeeEecH-HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999954 444444322 22334788999999999987655 566666666666655555555555
Q ss_pred cCCc-eecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 AGIS-CLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g~~-~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
.+.. ...+. |+++|+.+.+..+ ........++...++ +.||.+.|+..+ .+.+||+++ .+++++++++++
T Consensus 342 ~~~~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~-~~Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~ 415 (425)
T PRK08088 342 HPEIGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARAR-DKGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLE 415 (425)
T ss_pred CCCeEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHH-hCCCEEecCCCC----CCEEEEECCCCcCHHHHHHHHH
Confidence 4431 12222 7889999854321 011123345777766 569988876544 368999997 478999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|.++++.
T Consensus 416 ~l~~~l~~ 423 (425)
T PRK08088 416 IIAQCFDE 423 (425)
T ss_pred HHHHHHHh
Confidence 99998875
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=166.67 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=148.9
Q ss_pred HHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++.++.. +++++|++++++||||.+.+ +++|.++|+++|+++|+||+|..+.++.... ....... . .
T Consensus 153 ~~~l~~~~~~~~~~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~-~------~ 221 (385)
T TIGR01825 153 DRVLRENPSYGKKLIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFG-L------E 221 (385)
T ss_pred HHHHHhhccCCCeEEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcC-C------C
Confidence 4444433 36788888888999999988 8999999999999999999997654432111 1111111 0 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.+.+++++||||++|++| ||+++++ .+.+.+.... .+ .+ .+++.+.++.++++.. .++ .+..++++++
T Consensus 222 ~~~~i~~~s~sK~~~~~g---G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~ 293 (385)
T TIGR01825 222 DKVDIQVGTLSKAIGVVG---GYAAGHK-ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDN 293 (385)
T ss_pred cCCcEEEEeccHHhhcCC---CEEecCH-HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHH
Confidence 467899999999998777 9999854 4444443322 12 22 3456666766666532 111 2345667778
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEe-cCC
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFA-NMS 233 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~-~~~ 233 (289)
++++.+.|.+.|+++..+++.++ ++.++.. .+..+++..|+++ ||.+. +..|+. .+..++|+++. .++
T Consensus 294 ~~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~ 364 (385)
T TIGR01825 294 TRFFKAGLGKLGYDTGGSETPIT-PVVIGDE------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHT 364 (385)
T ss_pred HHHHHHHHHHcCCCCCCCCCCEE-EEEECCH------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCC
Confidence 89999999988888877776543 3444321 1224688888866 99985 444442 24478999984 379
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|++++++
T Consensus 365 ~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 365 KDDLDQALDAYEKVGKE 381 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=170.24 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=148.0
Q ss_pred CCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++++||+|.+++.+ .+++|.++|+++|+++|+||+|.+++++|..+ . .+... ...+ +.
T Consensus 182 ~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~-~~~~~-------~~pD----i~ 248 (398)
T PRK03244 182 DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-A-HQHDG-------VTPD----VV 248 (398)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-h-hhhhC-------CCCC----EE
Confidence 4688989988899999999765 59999999999999999999999876655422 1 11111 0112 45
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||++| +|+|+||++++++ +.+.+.. ....+..|++.+.++.++|+.... .+..++++++.+++.+.|++
T Consensus 249 t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~~ 321 (398)
T PRK03244 249 TLAKGLG-GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIAS-----EGLLENAERLGEQLRAGIEA 321 (398)
T ss_pred EEchhhh-CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHh
Confidence 8899999 8999999999655 5554443 222334788899988888763221 13445666677778888887
Q ss_pred cCCce--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISC--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
+++.. .....|.++|+.++.. ...++...++ ++||.+.|.. ...+|++++. +++++++.++++
T Consensus 322 ~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~p~~~~t~~~i~~~~~~ 387 (398)
T PRK03244 322 LGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR-EAGFLVNAVA------PDVIRLAPPLIITDAQVDAFVAA 387 (398)
T ss_pred cCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH-HCCeEEeecC------CCEEEEECCCcCCHHHHHHHHHH
Confidence 64321 2223578889988532 1245677766 6699998742 3689999865 799999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|.+++.+.
T Consensus 388 l~~~l~~~ 395 (398)
T PRK03244 388 LPAILDAA 395 (398)
T ss_pred HHHHHHhc
Confidence 99998754
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-20 Score=167.22 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=148.9
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||+|.+.+ +++|.++|+++++++|+||+|+...++ +....+.+..+ . ..+.+++++||
T Consensus 177 ~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g-~~G~g~~~~~~-~------~~~~~i~~~tl 245 (406)
T PRK13393 177 RPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYG-PRGGGIAEREG-L------ADRLTIIEGTL 245 (406)
T ss_pred CCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCchhhhcC-C------CCCCeEEEEeC
Confidence 5788899999999999999 999999999999999999999833232 22222222211 0 12346778999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||++|++| ||++++ +.+.+.+.... .+ ...++..+.++.+.++.. .... ..+..++++.+++.+.|++
T Consensus 246 sKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~~-~~~~~~~~~~~~l~~~L~~ 317 (406)
T PRK13393 246 AKAFGVMG---GYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KASS-AERERHQDRVARLRARLDK 317 (406)
T ss_pred chhhcccC---ceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhCH-HHHHHHHHHHHHHHHHHHH
Confidence 99999888 999985 44555554432 22 224555666666666542 2222 2345678888999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
.|+++.++.+.++. +.+... ....++...|++++||.+.++.+... .+..++||++.. ++++|+++++++|
T Consensus 318 ~g~~~~~~~~~i~~-v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l 390 (406)
T PRK13393 318 AGIPHLPNPSHIVP-VMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQAL 390 (406)
T ss_pred cCCCcCCCCCCeEE-EEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 88877766666543 444321 12346778887667999998755432 244789999954 7999999999999
Q ss_pred HHHHHHH
Q 044773 245 KAFVDSI 251 (289)
Q Consensus 245 ~~~l~~~ 251 (289)
++++++.
T Consensus 391 ~~~~~~~ 397 (406)
T PRK13393 391 SEIWARL 397 (406)
T ss_pred HHHHHhc
Confidence 9988764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=167.06 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=146.8
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++...+ .+.++++.+++||+|...+ +++|.++|+++|+++|+||+|....++... ........ . +.
T Consensus 158 l~~~i~~~~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g-~~~~~~~~-~-----~~ 227 (385)
T PRK05958 158 LEALLAKWRAGRALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQG-RGLAAEAG-L-----AG 227 (385)
T ss_pred HHHHHHhccCCCeEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCC-CchHHhhC-C-----CC
Confidence 355554432 3455566667999998877 999999999999999999999754343111 11111110 0 23
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-ccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.+++++++|+||.+|.+| ||+++++ .+.+.+... ..+ ...++....++..+++... .. .+..+++.++
T Consensus 228 ~~~~i~~~s~sK~~~~~G---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~---~~-~~~~~~~~~~ 299 (385)
T PRK05958 228 EPDVILVGTLGKALGSSG---AAVLGSE-TLIDYLINRARPFIFTTALPPAQAAAARAALRILR---RE-PERRERLAAL 299 (385)
T ss_pred CCceEEEEechhhcccCC---cEEEcCH-HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHH
Confidence 467899999999999777 9998864 444443322 122 1134444444555555322 11 4567889999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~ 234 (289)
++++.+.|++.++++.++.++ ++++.++.. .+..++...|. ++||.+.++..+. +.+++++||+++. +++
T Consensus 300 ~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~ 371 (385)
T PRK05958 300 IARLRAGLRALGFQLMDSQSA-IQPLIVGDN------ERALALAAALQ-EQGFWVGAIRPPTVPAGTSRLRITLTAAHTE 371 (385)
T ss_pred HHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHH-HCCceEecccCCCCCCCCceEEEEecCCCCH
Confidence 999999999888887766665 556776532 22346777776 5699999865443 2245799999963 699
Q ss_pred HHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAF 247 (289)
Q Consensus 235 e~l~~~l~~l~~~ 247 (289)
+++++++++|+++
T Consensus 372 ~~i~~~l~~l~~~ 384 (385)
T PRK05958 372 ADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=163.45 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=147.8
Q ss_pred hHHHhhhC---CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH---LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++.. .+++++++++|+||||...+ +++|+++|+++|+++|+|++|+...+. .....+..+ . .
T Consensus 120 le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~-~~~~~~~~~-~------~ 188 (349)
T cd06454 120 LEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYG-PHGRGVEEF-G------G 188 (349)
T ss_pred HHHHHHHhhccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccC-CCCCChhhh-c------c
Confidence 45555542 35778888899999999887 899999999999999999999743222 111111111 1 0
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+..+.+++++|+||.++.+| ||++.+++.+.........+ ...+++.+.++...++.. .+ .+..++++++
T Consensus 189 ~~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~ 261 (349)
T cd06454 189 LTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQE 261 (349)
T ss_pred ccccCcEEEeechhhhcccC---CEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHH
Confidence 23467899999999998666 99998654433332222222 224455555555555432 22 4566788999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~ 233 (289)
+++.+.+.|.+.|+++..+.++++.++.++.. .+..++...|.++ ||.+.++.... ....+++|++++. ++
T Consensus 262 ~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~ 334 (349)
T cd06454 262 NVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHT 334 (349)
T ss_pred HHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCC
Confidence 99999999998888777665655555544321 1234677777755 99998864322 1224789999975 69
Q ss_pred HHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAF 247 (289)
Q Consensus 234 ~e~l~~~l~~l~~~ 247 (289)
++++++++++|+++
T Consensus 335 ~~~i~~~~~~l~~~ 348 (349)
T cd06454 335 KEDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=168.88 Aligned_cols=204 Identities=18% Similarity=0.167 Sum_probs=141.6
Q ss_pred CCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||+|.+++.+ .+++|.++|+++|+++|+||+|.+++.++..+. .+.. +....+.
T Consensus 185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~--~~~~-----------~~~pdi~ 251 (396)
T PRK04073 185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA--CDWD-----------NVTPDMY 251 (396)
T ss_pred cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH--hhhc-----------CCCCCEE
Confidence 4678878887799999998765 799999999999999999999998755543211 1111 1122355
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||.+|.+|+|+||++++ +.+.+.+... ...+..+++.+.++.+.|+... + ....++.+++.+++.+.|++
T Consensus 252 ~~sK~lg~gg~~ig~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~---~--~~l~~~~~~~~~~l~~~L~~ 325 (396)
T PRK04073 252 ILGKALGGGVFPISCVAAN-RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLE---E--EKLPERSLELGEYFKEQLKE 325 (396)
T ss_pred EecccccCCCCcceEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHh
Confidence 6899999778999999995 4455544332 2233478888888888876321 1 12335556677888888877
Q ss_pred cC---CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 AG---ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g---~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
++ +....+. |.++++++... ..++...|+ ++||.+.+. +++++||++. ..++++++++++
T Consensus 326 l~~~~i~~~~~~-g~~~~~~~~~~--------~~~~~~~l~-~~Gv~~~~~------~~~~iRi~p~l~~t~e~i~~~~~ 389 (396)
T PRK04073 326 IDNPMIKEVRGR-GLFIGVELNEP--------ARPYCEALK-EEGLLCKET------HETVIRFAPPLVITKEELDWAFE 389 (396)
T ss_pred hcCCcccceecc-eEEEEEEecch--------HHHHHHHHH-HCCeEEecC------CCCEEEEECCcccCHHHHHHHHH
Confidence 53 2333344 46677877531 235777776 569999763 2368999974 369999999999
Q ss_pred HHHHHH
Q 044773 243 RLKAFV 248 (289)
Q Consensus 243 ~l~~~l 248 (289)
+|++++
T Consensus 390 ~l~~~l 395 (396)
T PRK04073 390 KIKAVL 395 (396)
T ss_pred HHHHHh
Confidence 998865
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=164.93 Aligned_cols=209 Identities=14% Similarity=0.165 Sum_probs=146.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....++.++ +.++++.|
T Consensus 159 ~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g----~~~~~~~~~------------~~d~~~~s 219 (401)
T PRK10874 159 PRTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAV----HFPADVQAL------------DIDFYAFS 219 (401)
T ss_pred cCcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccc----cccCCchhc------------CCCEEEEe
Confidence 57899999999999999998 889999999999999999999732 111222222 45688899
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-----------------------ccCCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-----------------------SFGLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.+|.+| +||++++++.+ +.+.... ..++.+.....++..+++... +...
T Consensus 220 ~~K~~gp~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~--~~g~ 294 (401)
T PRK10874 220 GHKLYGPTG--IGVLYGKSELL-EAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA--DIDI 294 (401)
T ss_pred cccccCCCc--cEEEEEchHHH-hcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH--HhCH
Confidence 999888666 69999865443 3222110 012234456666666664321 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 219 (289)
.+..++.++.++++.+.|+++ |+++..+..+.++++.++.. . ..++...| .++||.+.+|..|..
T Consensus 295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-~------~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~ 366 (401)
T PRK10874 295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-H------HSDLVTLL-AEYGIALRAGQHCAQPLLAAL 366 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-C------HHHHHHHH-HHCCcEEeccccchHHHHHHh
Confidence 456778888889999999887 88776544445555666531 1 13466555 578999999987642
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
...+++|+|++. ++++|++.+++.|+++++.
T Consensus 367 g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 367 GVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 124799999965 7999999999999988764
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=161.62 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=149.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.+++++++++++|+||||.+.+ +++|+++|+++++++|+|++++. ++. ..++. ..
T Consensus 116 l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~---g~~-~~~~~------------~~ 176 (355)
T TIGR03301 116 IEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSF---GAI-PIDIE------------EL 176 (355)
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEecccc---CCc-ccchh------------hc
Confidence 4566665667888899999999999988 89999999999999999998763 222 22222 22
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhc-------------------cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKM-------------------SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.+++++|++|++ |.+| +||++++++.+.. +... ...++.+.+.+.++..+++....
T Consensus 177 ~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~ 253 (355)
T TIGR03301 177 DVDALIASANKCLEGVPG--FGFVIARRDLLEA-SAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA 253 (355)
T ss_pred CccEEEecCCcccccCCc--eeEEEECHHHHHH-hhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5668899999987 4455 7999997654433 3210 01123555666666666653211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+.+..++++++++++.+.|++.|+++..+ .+++++|+.++.... .+..++...|. +.||.+.|+..+.
T Consensus 254 -~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~i~~~~~~~ 327 (355)
T TIGR03301 254 -EGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD----FDFDDFYQELK-ERGFVIYPGKLTL 327 (355)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc----chHHHHHHHHH-HCCEEEECCcccc
Confidence 11256777788999999999999888875543 245677888764211 11234666655 6799999987553
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~ 247 (289)
.+++||++ ..+++++++++++.|+++
T Consensus 328 ---~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 328 ---ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ---ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 26899998 557999999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=160.67 Aligned_cols=215 Identities=17% Similarity=0.191 Sum_probs=146.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++. .++++|++++|+||+|.+++ +++|.++|+++|+++++|++|. ++.. ..++.+ .
T Consensus 116 l~~~i~~-~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~---~g~~-~~~~~~------------~ 175 (356)
T cd06451 116 IAEALEQ-HDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS---LGGE-PFRMDE------------W 175 (356)
T ss_pred HHHHHhc-cCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh---ccCc-cccccc------------c
Confidence 3444543 27899999999999999998 8888999999999999999986 2222 122211 1
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHh----cc----------------cc-CCCChHHHHHHHHHhCCch
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK----MS----------------SF-GLVSSQTQYLLSALLSDKK 140 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~----~~----------------~~-~~~~~~~q~~~~~~l~~~~ 140 (289)
+.+++++|++|+++.| .++||++.+++.+ +.+.. .. .. ++.+...+.++..+++...
T Consensus 176 ~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~ 253 (356)
T cd06451 176 GVDVAYTGSQKALGAP-PGLGPIAFSERAL-ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL 253 (356)
T ss_pred CccEEEecCchhccCC-CCcceeEECHHHH-HHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHH
Confidence 3346778999999844 4689999965543 33331 00 01 1122333445555554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 141 FAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
...+++..++.+++.+++.+.|.+.|+++..+. ++.++|+.++...+ ..+++..|.+++||.+.+|..+
T Consensus 254 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~~~~gI~~~~g~~~ 325 (356)
T cd06451 254 --EEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVD------GDEVVRRLMKRYNIEIAGGLGP 325 (356)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCC------HHHHHHHHHHhCCEEEeccccc
Confidence 233567778888999999999998888775432 34556666654322 2467888775569999998754
Q ss_pred CCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 218 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
. .++++|++++. +++++++++++.|++++
T Consensus 326 ~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 326 T--AGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred c--cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2 34699999954 68999999999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=163.42 Aligned_cols=203 Identities=19% Similarity=0.171 Sum_probs=138.5
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++.++||+|.. ++.+++++|.++|+++++++|+||+|.++.+.+.. .+. .... .... +.
T Consensus 169 ~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~-~~~~--------~~~d---~~ 235 (379)
T TIGR00707 169 DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAY-EHYG--------IEPD---II 235 (379)
T ss_pred hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhH-HhcC--------CCCC---EE
Confidence 367888886557777864 79999999999999999999999999876554432 111 1111 1122 34
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||.++ +|+|+||++++ +.+.+.+... ...+..+++.|.++.++++... . .+..++++++++.+++.|.+
T Consensus 236 t~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~--~~~~~~~~~~~~~~~~~l~~ 308 (379)
T TIGR00707 236 TLAKGLG-GGVPIGATLAK-EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---K--ERLLENVKEKGDYFKERLEE 308 (379)
T ss_pred EEccccc-CCcccEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--hhHHHHHHHHHHHHHHHHHH
Confidence 7899999 99999999996 4455555432 2223367888988887775321 1 23455666676777776665
Q ss_pred cCCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 167 AGISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.+... ..+..|.++|++++.. ..++.+.|. +.||.+.|+. .+++||+++. .++++++++++
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~~~~t~~~i~~~~~ 373 (379)
T TIGR00707 309 LGKNYPNKEVRGKGLMLGIELEAP--------CKDIVKKAL-EKGLLVNCAG------PKVLRFLPPLIITKEEIDEAVS 373 (379)
T ss_pred HHhhCCCCccccCceEEEEEecCc--------HHHHHHHHH-HCCcEEeeCC------CCEEEEECCCcCCHHHHHHHHH
Confidence 42211 1123567888887642 135666655 6799999852 3689999854 69999999999
Q ss_pred HHHHH
Q 044773 243 RLKAF 247 (289)
Q Consensus 243 ~l~~~ 247 (289)
+|+++
T Consensus 374 ~l~~~ 378 (379)
T TIGR00707 374 ALEEA 378 (379)
T ss_pred HHHHh
Confidence 99875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=163.75 Aligned_cols=222 Identities=17% Similarity=0.118 Sum_probs=141.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+ +....++....+ -..
T Consensus 173 l~~~l~~~-~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~-g~~g~g~~~~~~-------~~~ 240 (407)
T PRK07179 173 LRRQIERH-GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTH-GPQGAGLVAELG-------LTS 240 (407)
T ss_pred HHHHHHhc-CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCc-CCCCCchHHhcC-------CCC
Confidence 45555443 4678889999999999999 88999999999999999999984322 322222222211 012
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc---cCCC-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGLV-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~---~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..++++.|+||++|. |+||+++++ .+.+.+..... +... ++....++.++++. .....+.++++++++
T Consensus 241 ~vdi~~~S~sK~~g~---~~G~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~----~~~~~~~~~~l~~~~ 312 (407)
T PRK07179 241 RVHFITASLAKAFAG---RAGIITCPR-ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV----IESADDRRARLHANA 312 (407)
T ss_pred CCCEEEeechHhhhc---cCeEEEeCH-HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHH
Confidence 335889999999973 579999964 45444443221 2211 22222223333332 222345678899999
Q ss_pred HHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC-CCCCCCeEEEEEec-CCHH
Q 044773 158 RKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFAN-MSED 235 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~~Ris~~~-~~~e 235 (289)
+++.+.|.++|+++. +.+ .++++.++... +...+...| .++||.+..-... .+..++.+||+++. ++++
T Consensus 313 ~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~~------~~~~~~~~L-~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~e 383 (407)
T PRK07179 313 RFLREGLSELGYNIR-SES-QIIALETGSER------NTEVLRDAL-EERNVFGAVFCAPATPKNRNLIRLSLNADLTAS 383 (407)
T ss_pred HHHHHHHHHcCCCCC-CCC-CEEEEEeCCHH------HHHHHHHHH-HHCCceEeeecCCCCCCCCceEEEEECCCCCHH
Confidence 999999998887766 333 45666654321 123344454 4779974311100 11235789999964 7999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~ 252 (289)
+++++++.|++++++..
T Consensus 384 di~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 384 DLDRVLEVCREARDEVD 400 (407)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999888754
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=162.81 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=144.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d 79 (289)
+++++.. .++.+|++...+||.|... +.+.+++|.++|++||+++|+||+|.+++.++..+.. ...+.+
T Consensus 159 l~~~~~~-~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~P-------- 229 (382)
T PLN00144 159 ARKLIQK-GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEP-------- 229 (382)
T ss_pred HHHhcCC-CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCC--------
Confidence 3444433 3566755553389944432 4556999999999999999999999988666653221 222321
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHH---HHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLS---ALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+ +.||||.++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++. .+++++++ .+++++..+.++
T Consensus 230 --D----i~t~sK~l~-~G~pig~v~~~~-~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~ 300 (382)
T PLN00144 230 --D----IMTLAKPLA-GGLPIGAVLVTE-KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYLR 300 (382)
T ss_pred --C----EEEeccccc-CCcceEEEEEcH-HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHH
Confidence 2 889999998 999999999964 44444432 2223347888888888 55666665 666666666664
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+ .+.+.+.+++........|+++|+.+.. .. ..+...++ +.||.+.|+.. ...+||+++. ++
T Consensus 301 ~---~l~~~~~~~~~~~~vrg~G~~~~l~l~~--~~------~~~~~~~~-~~Gv~i~~~~~-----~~~lrl~p~~~~~ 363 (382)
T PLN00144 301 E---LLRRKLGGNPHVKEVRGVGLLVGIQLDV--PA------GPLVDACR-DSGLLVLTAGK-----GDVVRLVPPLVIS 363 (382)
T ss_pred H---HHHHHHhhCCCceeeecCceEEEEEecC--cc------HHHHHHHH-HCCeEEeecCC-----CCEEEEeCCCccC
Confidence 3 3445555543211222378999999831 11 34666665 77999998621 3689999976 79
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|.+++.+
T Consensus 364 ~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 364 EAELEQAVEILADCLPA 380 (382)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998865
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-19 Score=158.53 Aligned_cols=218 Identities=12% Similarity=0.165 Sum_probs=153.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.+++++++++++++||||.+++ +++|.++|+++|+++|+|++++ + |..+.++.++
T Consensus 120 l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~-g~~~~~~~~~------------ 180 (363)
T TIGR02326 120 VEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---F-GGIPIDIAEL------------ 180 (363)
T ss_pred HHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---c-cCcccchhhc------------
Confidence 4566666667888899999999999999 8999999999999999999886 3 2323343333
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHh--------------c-----cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATK--------------M-----SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~--------------~-----~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.+++++|++|+++ .+| +||++++++.+...... . ...++.+...+.++..+++....
T Consensus 181 ~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~ 258 (363)
T TIGR02326 181 HIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEK 258 (363)
T ss_pred CccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45588999999884 345 79999976554332110 0 01123566677776666654211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+++..++++++++++++.|+++|+....+ .++...++.++.... .+..++...| +++||.+.||..+.
T Consensus 259 -~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~L-~~~gi~v~~g~~~~ 332 (363)
T TIGR02326 259 -EGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPD----YRFADFYQRL-KEQGFVIYPGKVSQ 332 (363)
T ss_pred -hhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCC----CCHHHHHHHH-HHCCEEEECCcCCC
Confidence 22256678999999999999999888876543 345556677664211 1113455555 46799999997653
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++||++ +.++.++++.++++|++++.
T Consensus 333 ---~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 333 ---VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 46899997 65799999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=162.62 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=147.8
Q ss_pred CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++.+|++++++|++|... +.+.++++.++|+++|+++|+||+|.++..++..... ...+ ..+ +
T Consensus 164 ~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~----------~pd----i 229 (375)
T PRK04260 164 KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI----------EPD----I 229 (375)
T ss_pred CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC----------CCC----E
Confidence 3567888888899999875 4678999999999999999999999876554432111 1112 112 4
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.||||+++ +|+|+||++++++ +.+.+.. ....+..+++.+.++.++++.... +++.++.++..+..++.+.+.+.
T Consensus 230 ~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 306 (375)
T PRK04260 230 FTLAKGLA-NGVPVGAMLAKSS-LGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQ 306 (375)
T ss_pred EEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999998 8999999999654 4444432 222334688999999999876554 55567777777777777877777
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE-ecCCHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~-~~~~~e~l~~~l~~l 244 (289)
+.+.....+..|+++|+++... ..++...+. ++||.+.|. +...+|+++ ..+++++++++++++
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~-~~Gi~v~~~------~~~~lR~~~~~~~t~~~i~~~l~~l 371 (375)
T PRK04260 307 DKETVTTVRGLGYMIGIETTAD--------LSQLVEAAR-DKGLIVLTA------GTNVIRLLPPLTLTKEEIEQGIAIL 371 (375)
T ss_pred hCCCeeEEeccceEEEEEecCc--------HHHHHHHHH-hCCCEEecC------CCCEEEEcCCCccCHHHHHHHHHHH
Confidence 6642222233688999988431 135666665 679999874 236799999 558999999999999
Q ss_pred HHH
Q 044773 245 KAF 247 (289)
Q Consensus 245 ~~~ 247 (289)
+++
T Consensus 372 ~~~ 374 (375)
T PRK04260 372 SEV 374 (375)
T ss_pred HHh
Confidence 775
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=161.35 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=144.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++++|++|+.. ....++.++ +.++++.|
T Consensus 156 ~~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~----~~~~~~~~~------------~~d~~~~s 216 (398)
T TIGR03392 156 PRTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVV----HGPPDVQAL------------DIDFYAFS 216 (398)
T ss_pred cCceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcC----CCCCChhhc------------CCCEEEEe
Confidence 57899999999999999998 888999999999999999999742 112232222 44578889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc---------------------c--cCCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------------------S--FGLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------------------~--~~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.+|.+| +||++++++.+ +.+.... . .++.+.....++..+++... +...
T Consensus 217 ~~K~~gp~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~--~~g~ 291 (398)
T TIGR03392 217 GHKLYGPTG--IGVLYGKTELL-EAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT--DIDI 291 (398)
T ss_pred cccccCCCc--eEEEEEcHHHH-hhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH--HhCH
Confidence 999888555 89999965443 3222110 0 12233345555555554321 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 219 (289)
++..++.++.++++.+.|.++ |+++..+..+.++++.++.. . ..++...| .++||.+.+|..|..
T Consensus 292 ~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-~------~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~ 363 (398)
T TIGR03392 292 AAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-H------HSDLAALL-AESGIALRAGQHCAQPLMAAL 363 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-C------HHHHHHHH-HhCCEEEecCccchHHHHHHh
Confidence 466677888888899999887 77766544445666665531 1 13466665 577999999987642
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
..++++|+|+.. ++++|++.+++.|++++++
T Consensus 364 g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 364 GVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred CCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 124799999965 7999999999999988775
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-19 Score=153.83 Aligned_cols=214 Identities=17% Similarity=0.273 Sum_probs=164.0
Q ss_pred HhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCC
Q 044773 5 AQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~ 82 (289)
.+++.+.-.+|++.-| |||||.-++.+++++|+++.++.+.+.+.|-||+++.-+.. .-..+..+.. ...
T Consensus 165 ~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~--------~~~ 236 (396)
T COG1448 165 DLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAE--------VGP 236 (396)
T ss_pred HHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHH--------hCC
Confidence 4455556667777777 99999999999999999999999999999999998733311 1122333332 223
Q ss_pred ceEEEecCccccCCCCceEEEEE--ecCHHHHHHHH----h--ccccCCCChHHHHHHHHHhCCchH---HHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIY--SNDDTVVAAAT----K--MSSFGLVSSQTQYLLSALLSDKKF---AQNYISENKK 151 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~--~~~~~~~~~~~----~--~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~ 151 (289)
..++..|+||.||+-|.|+|++. +.++...+.+. . ...+++++..+..+++..|.+..+ +..++..+++
T Consensus 237 ~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~ 316 (396)
T COG1448 237 ELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQ 316 (396)
T ss_pred cEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 37889999999999999999964 45544433221 1 234555666888999999998764 2556778999
Q ss_pred HHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++.+.++.|++.|++. .+.+...+.|||.+..+.. +....|.+++||++.... ||
T Consensus 317 Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~QV~rLree~~IY~v~sG----------Ri 375 (396)
T COG1448 317 RILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQVDRLREEFGIYLVASG----------RI 375 (396)
T ss_pred HHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HHHHHHHHhccEEEecCC----------ee
Confidence 9999999999999985 4788889999999875552 477888999999988532 99
Q ss_pred EEecCCHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~ 247 (289)
+++.+++..++.+.+.+.++
T Consensus 376 ~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 376 NVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred eeccCChhhHHHHHHHHHhh
Confidence 99878999999999998875
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=162.83 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=140.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. .+++++|++++++||||.+++ .+.+++|.++|++||+++|+||+|.+++++|..+. ....
T Consensus 170 le~~l~-~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~--~~~~---------- 236 (400)
T PTZ00125 170 LEKLLQ-DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLA--HDHE---------- 236 (400)
T ss_pred HHHHhC-CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhH--HHhc----------
Confidence 455554 347899888877999999996 55699999999999999999999987755554211 1111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+....+.++||.++.+++|+||++++++ +.+.+... ...+..+++.+.++.+.++... + ....++.+++.+
T Consensus 237 -~~~pd~~~~sK~l~~g~~~ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~---~--~~~~~~~~~~~~ 309 (400)
T PTZ00125 237 -GVKPDIVLLGKALSGGLYPISAVLANDD-VMLVIKPGEHGSTYGGNPLACAVAVEALEVLK---E--EKLAENAQRLGE 309 (400)
T ss_pred -CCCCCEEEEcccccCCCcCcEEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHH
Confidence 1111134578999843359999999654 44443322 2223367777777766554321 1 012233444445
Q ss_pred HHHHHHHhc----CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cC
Q 044773 159 KLVSGLEKA----GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NM 232 (289)
Q Consensus 159 ~l~~~l~~~----g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~ 232 (289)
++.+.|++. ++. ...+ .|.+.++.++.... .+..+++..|+ ++||.+.|+. .+++||++. ..
T Consensus 310 ~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~----~~~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~~~~ 377 (400)
T PTZ00125 310 VFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSDG----VNAWDLCLKLK-ENGLLAKPTH------DNIIRFAPPLVI 377 (400)
T ss_pred HHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCcc----hHHHHHHHHHH-HCCeEEeecC------CCEEEEECCccC
Confidence 555555442 322 2333 45677777753211 22346777777 6699998852 468999984 36
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~ 252 (289)
+++++++++++|.+++.+..
T Consensus 378 ~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 378 TKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=160.66 Aligned_cols=204 Identities=16% Similarity=0.159 Sum_probs=141.1
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++..+++++|.. .+.+++++|.++|+++|+++|+||+|.++.+++... +. +.... ..+ +.
T Consensus 166 ~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-~~-~~~~~-------~~d----i~ 232 (377)
T PRK02936 166 EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AY-EQFGL-------DPD----IV 232 (377)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HH-HhhCC-------CCc----EE
Confidence 467888888779998877 578999999999999999999999999876655421 21 11110 112 44
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||+++ +|+|+||++++ +.+.+.+.... ..+..|++.|.++.++++.... ....+.++++.+++++.|++
T Consensus 233 t~sK~l~-~G~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~~ 305 (377)
T PRK02936 233 TVAKGLG-NGIPVGAMIGK-KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-----PSFLEEVQEKGEYFLQKLQE 305 (377)
T ss_pred EEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHH
Confidence 7999999 99999999995 45555443322 2234788999999888875421 22335556666666666665
Q ss_pred c--CCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE-ecCCHHHHHHHH
Q 044773 167 A--GISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDTLKLSM 241 (289)
Q Consensus 167 ~--g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~-~~~~~e~l~~~l 241 (289)
. ++... ....|+++|+++++. ...+...+ .++||.+.|+. .+++||++ ..++++++++++
T Consensus 306 ~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~~l-~~~gv~v~~~g------~~~lRi~p~~~~~~~~i~~~i 370 (377)
T PRK02936 306 ELEHLECVKNIRGKGLMIGIECTEE--------VAPVIEQL-REEGLLVLSAG------PNVIRLLPPLVVTKEELDQAV 370 (377)
T ss_pred HHhhCCcEEeEeecceEEEEEecch--------HHHHHHHH-HHCCeEEecCC------CCEEEEECCcccCHHHHHHHH
Confidence 3 23221 123468899998742 13455555 57799998742 46899997 347999999999
Q ss_pred HHHHHHH
Q 044773 242 QRLKAFV 248 (289)
Q Consensus 242 ~~l~~~l 248 (289)
++|.+++
T Consensus 371 ~~l~~~~ 377 (377)
T PRK02936 371 YLLKKVL 377 (377)
T ss_pred HHHHHhC
Confidence 9998753
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=156.67 Aligned_cols=210 Identities=15% Similarity=0.186 Sum_probs=134.7
Q ss_pred CCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++| +||||.+++.+++++|+++|+++|+++|+|++|...... ....+...... +...++.
T Consensus 136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~-~~~~~~~~~~~----------~~d~~~~ 204 (353)
T PLN02721 136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV-ALGVPVHRLVK----------AADSVSV 204 (353)
T ss_pred CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh-hhCCCHHHHhh----------hCCEEEE
Confidence 57899999886 789999999999999999999999999999998622110 01112222211 2234566
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCC--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
|+||.++. ++|+++..++.+.+.+........ .+...+.+++.+.. + +++.++.++ ..++++++.+.|++
T Consensus 205 s~sK~l~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~~~~~-~~~~~~~l~~~L~~ 276 (353)
T PLN02721 205 CLSKGLGA---PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA---L-QENVPKLED-DHKKAKLLAEGLNQ 276 (353)
T ss_pred ecccccCC---ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH---H-HHHHHHHHH-HHHHHHHHHHHHHh
Confidence 89999974 357644334555554433322211 22223332222221 1 333444333 35667889999988
Q ss_pred c-CCce--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 A-GISC--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~-g~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
+ ++.+ .++.+ .++|++++.... .+...++..|. ++||.+.|+. ..++|++++ .+++++++++++
T Consensus 277 ~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~ 344 (353)
T PLN02721 277 IKGLRVNVAAVET-NIVYFDITDGSR----ITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLS 344 (353)
T ss_pred CCCcEEecCCccc-eEEEEEccCCcc----ccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHH
Confidence 7 6644 34444 568888875211 12246788776 7799999874 458999996 479999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
+|++++..
T Consensus 345 ~l~~~~~~ 352 (353)
T PLN02721 345 CFQQAALT 352 (353)
T ss_pred HHHHHhhc
Confidence 99987653
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=159.03 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=133.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++|+||||.+++ +++|.++|+++++++|+||+|+...++........+.... +..+++++++|+
T Consensus 179 ~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~------~~~d~~i~~~s~ 249 (402)
T PRK07505 179 NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDY------RLNERTIIAASL 249 (402)
T ss_pred CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCC------CCCCCeEEEEec
Confidence 4688999999999999999 7888999999999999999996433321111111122210 135778999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccC----CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||++|.+| ||++++++.+.+.+....... ..+++...++.+.++... ++++.+..+.++++.+.+.+.+..
T Consensus 250 sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 324 (402)
T PRK07505 250 GKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHL--SEELDQLQQKLQNNIALFDSLIPT 324 (402)
T ss_pred hhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999777 898775666666555432221 133455555555443110 222344455566665544433321
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
. ....+.++.++.+... ....++...|+ +.||.+.++..+.. .++.++||+++. ++++++++++++|
T Consensus 325 ~----~~g~~~~i~~~~~~~~------~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l 393 (402)
T PRK07505 325 E----QSGSFLPIRLIYIGDE------DTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLL 393 (402)
T ss_pred c----CCCCCCCEEEEEeCCH------HHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHH
Confidence 1 1122222233333221 12245777777 66999998744332 234689999964 6999999999999
Q ss_pred HHHHHH
Q 044773 245 KAFVDS 250 (289)
Q Consensus 245 ~~~l~~ 250 (289)
.+++++
T Consensus 394 ~~~l~~ 399 (402)
T PRK07505 394 KEILDE 399 (402)
T ss_pred HHHHHh
Confidence 988754
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=163.32 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=138.7
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++...+++++| +|++|.++ +.+++++|.++|+++++++|+||+|++++..+... . .+..
T Consensus 181 l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~-~~~~--------- 249 (413)
T cd00610 181 LEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-A-FEHF--------- 249 (413)
T ss_pred HHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-h-Hhhc---------
Confidence 3445554433334455566 67789876 67789999999999999999999999764433321 1 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHH--Hhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA--TKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~--~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+....+.|+||+++ +|+|+||++++ +.+.+.+ .... .....+++.+.++.+.++.. .+ .+..+++++
T Consensus 250 --~~~~d~~t~sK~l~-~g~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~~~~~~ 320 (413)
T cd00610 250 --GVEPDIVTLGKGLG-GGLPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLLENAAE 320 (413)
T ss_pred --CCCCCeEEEccccc-CccccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHH
Confidence 11223568999998 58999999995 4555543 2221 22336677777776666432 11 234556666
Q ss_pred HHHHHHHHHHhc----CCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 156 RHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 156 ~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
+.+++.+.|++. ++.......|.++++.+..... .........++..|+ ++||.+.|+. ...+|+++
T Consensus 321 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~------~~~lR~~~ 393 (413)
T cd00610 321 LGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG------GNVIRLLP 393 (413)
T ss_pred HHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC------CCEEEEEC
Confidence 666666666654 2222223345677777764311 000122345777666 6699999875 46799998
Q ss_pred ec-CCHHHHHHHHHHHHHH
Q 044773 230 AN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 230 ~~-~~~e~l~~~l~~l~~~ 247 (289)
+. +++++++++++++.++
T Consensus 394 ~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 394 PLIITEEEIDEGLDALDEA 412 (413)
T ss_pred CCcCCHHHHHHHHHHHHHh
Confidence 54 6899999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=161.18 Aligned_cols=211 Identities=14% Similarity=0.157 Sum_probs=147.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|+++.. +.....+. ..+.++++.|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~----g~~~~~~~------------~~~~d~~~~s 197 (381)
T PRK02948 137 PDTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTF----GKLPIDVF------------EMGIDSLSVS 197 (381)
T ss_pred CCCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhhc----cccccCcc------------cCCCCEEEec
Confidence 46889999999999999998 78899999999999999987762 22222221 2356788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHH------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAAT------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
++|.+|.+| +|+++++++....... .....++.|.+.+.++..+++.. .+++++.++++++.++++.+.
T Consensus 198 ~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~ 272 (381)
T PRK02948 198 AHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI---LKNMQEESLRFKELRSYFLEQ 272 (381)
T ss_pred HHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 999998777 8999886543111111 00123446778888888877653 346788889999999999999
Q ss_pred HHhcCCceecCC-ceEE----EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-----------------CC
Q 044773 164 LEKAGISCLKSN-AGLF----CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-----------------TE 221 (289)
Q Consensus 164 l~~~g~~~~~~~-~g~~----~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------------~~ 221 (289)
|+++|+++.... ..+. +.+.++. . +..++...| +++||.+.+|..|.. ..
T Consensus 273 L~~~~~~v~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~ 344 (381)
T PRK02948 273 IQTLPLPIEVEGHSTSCLPHIIGVTIKG-I------EGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEA 344 (381)
T ss_pred HhcCCCCEEEeCCCccCcCCEEEEEeCC-C------CHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHh
Confidence 999887655432 2211 1112221 1 123455555 577999998886422 01
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+++|||++. ++++|++.+++.|+++++++-
T Consensus 345 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 345 KQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999965 799999999999999877654
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=155.75 Aligned_cols=205 Identities=19% Similarity=0.143 Sum_probs=134.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++||||| |.+++.+++++|+++|+++|+++|+|++|......... .++..+. .+..+++.|
T Consensus 126 ~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~~~~~~~----------~~~d~~~~s 193 (338)
T cd06502 126 PPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALG-VALKTYK----------SGVDSVSFC 193 (338)
T ss_pred CcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-CCHHHHH----------hcCCEEEEe
Confidence 36899999999998 66779999999999999999999999998532111111 1222221 123356889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||++|++| |++++.++.+.+.+.... .+ ...+++.+.++...++...+ .+..+++.++++++.+.|+
T Consensus 194 ~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~~~~~l~~~L~ 265 (338)
T cd06502 194 LSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHEMARRLAEALE 265 (338)
T ss_pred ccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHH
Confidence 999999887 665443555555554332 11 12455666777777765433 3344567777789999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHH--HhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIV--YDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
++|+.+.++.+++.+ +.++.. . ....++...+. .++|+.+.+.. .+++||++.. +++++++++++
T Consensus 266 ~~~~~~~~~~~~~~~-v~~~~~--~---~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~ 333 (338)
T cd06502 266 ELGGLESEVQTNIVL-LDPVEA--N---AVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLS 333 (338)
T ss_pred hcCCCcccccCCeEE-EecCCc--c---HHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHH
Confidence 888776667766544 555421 1 00112333322 15699987642 2689999965 68999999999
Q ss_pred HHHH
Q 044773 243 RLKA 246 (289)
Q Consensus 243 ~l~~ 246 (289)
++++
T Consensus 334 ~l~~ 337 (338)
T cd06502 334 ALKA 337 (338)
T ss_pred HHhc
Confidence 8864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=160.62 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=145.3
Q ss_pred CccEEEEeCCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLGTTM--SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~--~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|.+++++|..+ .. +.. +....+.
T Consensus 183 ~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~-~~~-----------~v~pDi~ 248 (406)
T PRK12381 183 QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AY-MHY-----------GVTPDVL 248 (406)
T ss_pred CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hh-Hhh-----------CCCCCEE
Confidence 5666555 7999997655 78999999999999999999999998876666432 11 111 1112246
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||++| +|+|+||+++++ .+.+.+... ...+..+++.+.++.+.++.. . -.+.+++++++.+++.+.|++
T Consensus 249 t~sK~l~-gG~~ig~~~~~~-~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~~~l~~~L~~ 321 (406)
T PRK12381 249 TTAKALG-GGFPIGAMLTTE-KCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRHDWFVERLNT 321 (406)
T ss_pred Eehhhhh-CCCceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHH
Confidence 9999998 899999999964 455544332 222346888888888876532 1 124567788888888888877
Q ss_pred cC--Cc--eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 167 AG--IS--CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 167 ~g--~~--~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
++ .. ......|+++++.+..... .....+...+. ++||.+.++ +++.+||+++. ++++++++++
T Consensus 322 l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l~-~~Gv~v~~~------g~~~lRl~p~~~~t~~~i~~~~ 390 (406)
T PRK12381 322 INARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQEAA-KAGVMVLIA------GPNVVRFAPALNISEEEITTGL 390 (406)
T ss_pred HHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHHHH-HCCcEEeeC------CCCEEEEeCCccCCHHHHHHHH
Confidence 53 22 1223447788888764211 11234555554 779999763 23589999965 7999999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|.+++++..
T Consensus 391 ~~l~~~l~~~~ 401 (406)
T PRK12381 391 DRFARACERFV 401 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-18 Score=156.19 Aligned_cols=221 Identities=12% Similarity=0.089 Sum_probs=145.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCC-CCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIY-SGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.. ++++++++++|+||+ ..+ +++|+++|+++|+++|+|++| .++.+.+.....+.
T Consensus 153 l~~~i~~-~~~~~v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~------------- 213 (402)
T cd00378 153 LEKMALE-FKPKLIVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP------------- 213 (402)
T ss_pred HHHHHHh-CCCCEEEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-------------
Confidence 3444443 378999999998864 334 899999999999999999997 33323332111111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCCh--HHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSS--QTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
...++++|+||++ +|.|.||++++++.+.+.+.... .....++ ....++..++... ......+.++.+++++
T Consensus 214 -~~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~ 288 (402)
T cd00378 214 -GADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEA--LEPEFKAYAKQVVENA 288 (402)
T ss_pred -CCcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 1237899999987 67888999997745655554332 2221222 2222323333321 1224567778899999
Q ss_pred HHHHHHHHhcCCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----CCCCeEEEEEec-
Q 044773 158 RKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC----TEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~~~Ris~~~- 231 (289)
+++.+.|.+.|+.+. .+.+++++|++++..... ...+..+++++||.+.++...+. ....++||++..
T Consensus 289 ~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~------~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 362 (402)
T cd00378 289 KALAEALKERGFKVVSGGTDNHLVLVDLRPKGIT------GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAM 362 (402)
T ss_pred HHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCC------HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHH
Confidence 999999999888875 467789999998743211 12334456788999986433221 234689999944
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 ----MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 ----~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+++++++.+++.|++++.+..
T Consensus 363 ~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 363 TTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhccc
Confidence 258999999999999876554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-18 Score=153.80 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=145.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.+++++++++++|+||||...+ +++|.++|+++++++|+|+++. ++ ....++.++
T Consensus 122 l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~---~g-~~~~~~~~~------------ 182 (368)
T PRK13479 122 VEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSS---FG-AIPIDIAEL------------ 182 (368)
T ss_pred HHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEcccc---cC-Ccccccccc------------
Confidence 4455555557789999999999999999 8899999999999999997764 32 222232222
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhc-------------------cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKM-------------------SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+..++++|++|.+ |.+| +||++++++.+. .+... ...++.+.....++..+++....
T Consensus 183 ~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~ 259 (368)
T PRK13479 183 GIDALISSANKCIEGVPG--FGFVIARRSELE-ACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE 259 (368)
T ss_pred CceEEEecCccccccCCC--ceEEEECHHHHH-HhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4457789999987 5567 699999655443 32211 11123454555555555543211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+++..++++++++++.+.|+++|+++..+. .+....+.++.... .+..++...|. ++||.+.+|..+.
T Consensus 260 -~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~-~~gi~v~~g~~~~ 333 (368)
T PRK13479 260 -EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPA----YDFKEFYERLK-EQGFVIYPGKLTQ 333 (368)
T ss_pred -hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCC----cCHHHHHHHHH-HCCEEEecCCCCC
Confidence 223566778899999999999999888765432 11122233332110 11235666665 6699999886542
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++|++. +.+++++++.+++.|++++++.
T Consensus 334 ---~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 334 ---VDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 46899986 6679999999999999988764
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=154.37 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=158.2
Q ss_pred hHHHhhhCC----CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHL----KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
||+.+++.+ +.++|+....-...|.+.+ |++|++++++|++++++||+|+...+ |+....+.+...-
T Consensus 158 Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~-G~~GrG~~e~~g~----- 228 (388)
T COG0156 158 LEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVL-GPNGRGLAEHFGL----- 228 (388)
T ss_pred HHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEcccccccc-CCCCccHHHHhCC-----
Confidence 566666521 3567777777777899999 99999999999999999999996545 5555566655431
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHH-HhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
...+.+++++||||+||..| ||+.++ +.+.+.+ ++..++...+++....+++++...+. .......+++++++
T Consensus 229 -~~~~vdi~~gTlsKAlGs~G---g~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~-l~~~~~~r~~L~~~ 302 (388)
T COG0156 229 -EPEEVDIIVGTLGKALGSSG---GYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALRI-LEEGPERRERLQEL 302 (388)
T ss_pred -CCccceEEEEEchhhhcccC---ceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHH-HHhCHHHHHHHHHH
Confidence 23466899999999999899 999995 5555554 44555544444444444444444333 33456778889999
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~ 234 (289)
..++++.+...|+.+.+.... ++.+.+.+... ..++...|+++ ||.+.+..+... .+...+|+++. .+++
T Consensus 303 ~~~~~~~~~~~~~~~~~s~s~-I~pv~~gd~~~------a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~ 374 (388)
T COG0156 303 AAFFRSLLKALGLVLLPSESP-IIPVILGDEER------ALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTE 374 (388)
T ss_pred HHHHHHHHHhcCCccCCCCCC-eeeeEeCCHHH------HHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCH
Confidence 999998887778876555554 44455554322 25688888867 999987766543 34578999994 4899
Q ss_pred HHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAF 247 (289)
Q Consensus 235 e~l~~~l~~l~~~ 247 (289)
++++.+++.+.++
T Consensus 375 ~~I~~l~~~l~~~ 387 (388)
T COG0156 375 EDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=156.45 Aligned_cols=232 Identities=16% Similarity=0.193 Sum_probs=157.6
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC--cc-----CCCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGT--VF-----SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~--~~-----~~~~~~~~~~~~~ 71 (289)
|++++... +++++|++++|+||+ |++++.+++++|.++|+++|++||+|+++... .+ ++....++.++.
T Consensus 141 Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~- 219 (431)
T cd00617 141 LEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIA- 219 (431)
T ss_pred HHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHH-
Confidence 44555432 348899999999998 99999999999999999999999999996521 12 233344554442
Q ss_pred ccccccCCCCCceEEEecCccccCCCCce------EEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCC
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFR------VGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~G~r------~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~ 138 (289)
+.++|++|.+.++|+| -||++++++.+.+.++... .++..+.....+++..|.+
T Consensus 220 -------------~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e 286 (431)
T cd00617 220 -------------REMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLRE 286 (431)
T ss_pred -------------HHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHh
Confidence 3355666666656555 4699998776666555321 1222333333444445544
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC---CChhhHHHHHHHHHHhcCeEEeC-C
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS---NTFEAEMELWKKIVYDVKLNISP-G 214 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~p-g 214 (289)
... . +...+.++ +++++.+.|.+.|+.+..|.||+++|++++...+. .. .+..+++..|+++.||.+.. |
T Consensus 287 ~~~-~---~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~-~~~~~la~~L~~e~gV~~~~~g 360 (431)
T cd00617 287 AVE-E---DYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQ-FPAQALAAELYLEAGVRAVELG 360 (431)
T ss_pred ccc-H---HHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCccc-CcHHHHHHHHHHHcCeeEEeec
Confidence 211 1 22333444 44889999999999999999999999998864221 11 24567998999999999653 4
Q ss_pred CC-CC--CC-------CCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 215 SS-CH--CT-------EPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 215 ~~-f~--~~-------~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+. ++ +. .-..+|+++.. -+.++++.+.+++..+++....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 361 IFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred ceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 41 12 11 12679999954 5899999999999999887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=154.40 Aligned_cols=198 Identities=17% Similarity=0.186 Sum_probs=129.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|+++||+ ||.+++.+++++|+++|+++++++++||+|..... .....+...+.. ..+++ +.||
T Consensus 129 ~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~-~~~~~~~~~~~~--------~~~~~--~~s~ 195 (333)
T PRK10534 129 RTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAV-VAYGCELKEITQ--------YCDSF--TICL 195 (333)
T ss_pred cceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHH-HHcCCCHHHHHh--------cCCEE--EEEe
Confidence 57899999776 59999999999999999999999999999862111 000112222211 11322 3489
Q ss_pred ccccCCCCceEE-EEEecCHHHHHHHHhccccCC----CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGL----VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 91 sK~~g~~G~r~G-~i~~~~~~~~~~~~~~~~~~~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||.+|++ +| |+++ ++.+.+.+........ .+.+.+.+....+++ .. +..+..+++++++.+.|+
T Consensus 196 SK~~~~~---~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~ 264 (333)
T PRK10534 196 SKGLGTP---VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLR 264 (333)
T ss_pred EcCCCCc---ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHH
Confidence 9998754 68 5777 4555555554443221 122334444433432 11 222234446688999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~~l 244 (289)
++|+++.+++ ++|+|++++.. +..++. ++++++||.+.|+. ++|++.. .++++++++++++|
T Consensus 265 ~~g~~~~~~~-~nfv~~~~~~~-------~~~~~~-~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l 327 (333)
T PRK10534 265 EAGADVMRQD-TNMLFVRVGEE-------QAAALG-EYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHW 327 (333)
T ss_pred hCCCccCCCC-ceEEEEECCch-------hHHHHH-HHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHH
Confidence 9999888774 67999998731 113454 45568899998863 5799884 37999999999999
Q ss_pred HHHHH
Q 044773 245 KAFVD 249 (289)
Q Consensus 245 ~~~l~ 249 (289)
.+++.
T Consensus 328 ~~~~~ 332 (333)
T PRK10534 328 RAFLA 332 (333)
T ss_pred HHHhc
Confidence 87753
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=156.28 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=145.9
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++.++..++.+.++++.+ -++.|.+.+ +++|.++|++||+++|+||+|+...+ |.......+.++- .
T Consensus 239 Le~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~-G~~G~G~~e~~g~-------~ 307 (476)
T PLN02955 239 LNSLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVC-GENGGGVAEEFNC-------E 307 (476)
T ss_pred HHHHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCcee-cCCCCcHHHHhCC-------C
Confidence 4566665544344455555 789999999 99999999999999999999996655 4444454544331 3
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.+.+++++||||++|+.| ||+++++ .+++.++.. ..+...+++....++..+..... .......++.++++.++
T Consensus 308 ~di~ii~~TLsKA~G~~G---Gfi~gs~-~~~~~l~~~~~~~ifStalpp~~aaa~laal~l-~~~~~~~r~~L~~n~~~ 382 (476)
T PLN02955 308 ADVDLCVGTLSKAAGCHG---GFIACSK-KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVV-ARKEKWRRKAIWERVKE 382 (476)
T ss_pred CCCcEEEEeCccchhccC---ceeecHH-HHHHHHHHhCCCCeecccccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 477899999999999888 9999965 455665543 23322222222223233332222 11123467788888888
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSEDTL 237 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e~l 237 (289)
+++. .|+.+ . +.++.+.+..+.. ..++...|+ +.||.+.+..+... .+...+||++. .++++|+
T Consensus 383 fr~~---~G~~~---~-sPI~pI~ig~~~~------a~~~~~~L~-~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edI 448 (476)
T PLN02955 383 FKAL---SGVDI---S-SPIISLVVGNQEK------ALKASRYLL-KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDV 448 (476)
T ss_pred HHHh---cCCCC---C-CCEEEEEeCCHHH------HHHHHHHHH-HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHH
Confidence 8874 36653 2 3344455554322 255777777 66999987665543 33468999994 4899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDSITT 253 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~~ 253 (289)
+.+++.|.++.+....
T Consensus 449 d~lv~~L~~~~~~~~~ 464 (476)
T PLN02955 449 KKLITALSSCLDFDNT 464 (476)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999988766554
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-18 Score=156.65 Aligned_cols=208 Identities=13% Similarity=0.093 Sum_probs=139.6
Q ss_pred CCccEEEEeCCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSR-NELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~-~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||+|.++++ +++++|.++|+++|+++|+||+|.++++.+..+. .+... -..+.+
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~--~~~~g-------~~~D~~---- 252 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLA--EEHEG-------IEADVT---- 252 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhH--HhhcC-------CCCCEE----
Confidence 478999999999999999974 4699999999999999999999987655443211 11111 012322
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.++|.++...+|+||++++++ +.+.+.... ..+..+++.+.++.+.|+.. ++ ....+.++++.+++.+.|++
T Consensus 253 ~~~K~l~gg~~~ig~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l---~~--~~~~~~~~~~~~~l~~~L~~ 326 (401)
T PRK00854 253 LIGKALSGGFYPVSAVLSNSE-VLGVLKPGQHGSTFGGNPLACAVARAALKVL---TE--EGMIENAAEMGAYFLEGLRS 326 (401)
T ss_pred EecccccCCccCeEEEEEcHH-HHhcccCCCCCCCCCcCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHh
Confidence 247999733379999999654 444443221 22336778888888877642 21 23567788888889999988
Q ss_pred cCCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHH
Q 044773 167 AGISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQ 242 (289)
Q Consensus 167 ~g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~ 242 (289)
++... ..+.+.++. +.+... . ....+++..|+ ++||.+.+. +.+++|+++. .+++++++++++
T Consensus 327 ~~~~~~~~~~g~g~~~~-i~~~~~--~---~~~~~~~~~L~-~~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~ 393 (401)
T PRK00854 327 IRSNIVREVRGRGLMLA-VELEPE--A---GGARQYCEALK-ERGLLAKDT------HDHTIRLAPPLVITREQVDWALE 393 (401)
T ss_pred hccCceEEEeccceEEE-EEEecC--c---hhHHHHHHHHH-HCCeEEecC------CCCEEEEeCCcccCHHHHHHHHH
Confidence 64321 234454444 433221 1 12246788877 469999753 2368999984 369999999999
Q ss_pred HHHHHHH
Q 044773 243 RLKAFVD 249 (289)
Q Consensus 243 ~l~~~l~ 249 (289)
+|++++.
T Consensus 394 ~l~~~l~ 400 (401)
T PRK00854 394 QIAKVLA 400 (401)
T ss_pred HHHHHhh
Confidence 9988763
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-18 Score=155.25 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=141.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++++|++|+.. ....++. ..+.++++.|
T Consensus 158 ~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g----~~~~~~~------------~~~~d~~~~s 218 (403)
T TIGR01979 158 EKTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVP----HMPVDVQ------------ALDCDFYVFS 218 (403)
T ss_pred cCCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcC----ccccCcc------------ccCCCEEEEe
Confidence 57899999999999999999 889999999999999999999742 2222222 2256689999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc---------------------c--cCCCChHHHHHHHHHhCCchHHHH-H
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------------------S--FGLVSSQTQYLLSALLSDKKFAQN-Y 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------------------~--~~~~~~~~q~~~~~~l~~~~~~~~-~ 145 (289)
++|.+|.+| +|+++++++. .+.+.... . .++.+.....++..+++.. .+ -
T Consensus 219 ~~K~~gp~G--~g~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~---~~~g 292 (403)
T TIGR01979 219 GHKMYGPTG--IGVLYGKEEL-LEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL---EAIG 292 (403)
T ss_pred cccccCCCC--ceEEEEchHH-HhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH---HHhC
Confidence 999888556 8999986543 33221000 0 0123334445555555321 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
.++..++..+.++++.+.|+++ |+++..+. ++++. +.++.. . ..++.+ .++++||.+.+|..+..
T Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~-~~~~~~-~------~~~~~~-~L~~~gI~v~~g~~~~~ 363 (403)
T TIGR01979 293 LENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIIS-FNVEGV-H------PHDVGT-ILDEEGIAVRSGHHCAQ 363 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEE-EEeCCc-C------HHHHHH-HHhhCCEEEcchhhhhH
Confidence 4566788888889999999887 78877654 44444 555431 1 134554 45688999998764321
Q ss_pred ------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++++|||++. ++++|++.+++.|+++++.+
T Consensus 364 ~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 364 PLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 125789999974 79999999999999877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=155.45 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=100.0
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++|+|++++|+||||.+.+ +++|+++|++++++||+|++|..+.+ +...+ +.+++++||
T Consensus 163 ~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~------~~~~~------------g~divv~S~ 221 (418)
T PLN02242 163 KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVL------SPARL------------GADVVVHSI 221 (418)
T ss_pred CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCC------CHHHc------------CCcEEEEeC
Confidence 5899999999999999987 99999999999999999999975432 11111 356889999
Q ss_pred ccccCCCCce-EEEEEecCHHHHHHHHhccc----cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFR-VGAIYSNDDTVVAAATKMSS----FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 91 sK~~g~~G~r-~G~i~~~~~~~~~~~~~~~~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||.++.+|.+ .||++++++ +.+.+..... ..+.+...|.+...+..... +..+.+.+.++++.+.+.|+
T Consensus 222 SK~l~g~g~~~gG~iv~~~~-li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~t-----l~~r~~~~~~~a~~la~~L~ 295 (418)
T PLN02242 222 SKFISGGADIIAGAVCGPAE-LVNSMMDLHHGALMLLGPTMNPKVAFELSERLPH-----LSLRMKEHCRRAMEYAKRMK 295 (418)
T ss_pred ccccCCCCCceEEEEEcCHH-HHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999878877 599998654 4444443321 23234455666555554432 34566788999999999999
Q ss_pred hcCCceecC
Q 044773 166 KAGISCLKS 174 (289)
Q Consensus 166 ~~g~~~~~~ 174 (289)
++++++..|
T Consensus 296 ~~~~~V~yP 304 (418)
T PLN02242 296 ELGLKVIYP 304 (418)
T ss_pred hCCCEEECC
Confidence 987766544
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=153.73 Aligned_cols=213 Identities=13% Similarity=0.114 Sum_probs=135.9
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-+|..+ +.+.+++|.++|++|++++|+||+|.++.+++.. .++. ..+....+.
T Consensus 197 ~iAa-vi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~-~a~~------------~~~~~pDi~ 262 (420)
T TIGR00700 197 NVAA-LVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM-FACE------------HEGPEPDLI 262 (420)
T ss_pred cEEE-EEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchh-HHHh------------hcCCCCCEE
Confidence 4555 45556 66678766 5556999999999999999999999998666542 1111 112334466
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+|||.++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++.+.++ +..+ .+..++..+.++++.+.+.+
T Consensus 263 ~lsK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~~~L~~l~~- 338 (420)
T TIGR00700 263 TTAKSLA-DGLPLSGVTGRA-EIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL-IERARQIGRLVTDRLTTLKA- 338 (420)
T ss_pred Eeecccc-CCcceEEEEecH-HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHh-
Confidence 7999999 999999999964 44444431 22334478888888866554 3333 44444444444444333332
Q ss_pred HHhcC-CceecCCceEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 164 LEKAG-ISCLKSNAGLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 164 l~~~g-~~~~~~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+++ +....+. |.+.|+.+.+.... +.......+...+. ++||.+.|+..|+ +++||+++. +++++++++
T Consensus 339 --~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~p~~~f~----~~lRl~p~l~~~~~~l~~~ 410 (420)
T TIGR00700 339 --VDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAH-AAGLLLLTCGMFG----NIIRFLPPLTIGDELLSEG 410 (420)
T ss_pred --hCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeccCCCC----CEEEEECCCCcCHHHHHHH
Confidence 232 3334444 56777876432110 11111233444444 7799999987774 589999864 689999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|.+++.
T Consensus 411 ~~~l~~~l~ 419 (420)
T TIGR00700 411 LDILCAILA 419 (420)
T ss_pred HHHHHHHhh
Confidence 999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=152.87 Aligned_cols=218 Identities=11% Similarity=0.132 Sum_probs=138.4
Q ss_pred CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++.+|++...++|+|..+ +.+.+++|.++|+++++++|+||++.++.++|.. .....+ + +..+ +.
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~-~-------~~pD----i~ 263 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHY-A-------DKPD----LM 263 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhc-C-------CCCc----EE
Confidence 3566766554489999866 8999999999999999999999999998776653 222222 1 1222 68
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+|||.++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++.+.++-.+. .+.++..++.-++..+.+.+..++
T Consensus 264 t~gK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~l~~~ 340 (421)
T PRK09792 264 TMAKSLA-GGMPLSGVVGNA-NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNTLIDAKES 340 (421)
T ss_pred Eeehhhc-CCCceEEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999954 44444322 222334788888855555543221 222333332222222222222222
Q ss_pred cCCceecCCc-eEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNA-GLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~-g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
++. +..+.| |+++|+.+.+.... ........+...++ ++||.+.+... ....+||.++. ++++++++++++
T Consensus 341 ~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~g~----~~~~irl~P~l~i~~~ei~~~~~~ 414 (421)
T PRK09792 341 VPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL-AQGLLLLTCGA----YGNVIRFLYPLTIPDAQFDAAMKI 414 (421)
T ss_pred CCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEeCCCcCCHHHHHHHHHH
Confidence 343 334555 89999998753111 11122345666666 67999864322 24689999876 799999999999
Q ss_pred HHHHHH
Q 044773 244 LKAFVD 249 (289)
Q Consensus 244 l~~~l~ 249 (289)
+.+++.
T Consensus 415 l~~~l~ 420 (421)
T PRK09792 415 LQDALS 420 (421)
T ss_pred HHHHHh
Confidence 998874
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=152.26 Aligned_cols=133 Identities=18% Similarity=0.285 Sum_probs=97.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH---cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE---KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~---~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+++|+|++++|+||||.+++.+++.+|++.|++ +++++|+||+|....+. . ++ ..+.+++
T Consensus 173 ~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~--~--pl-------------~~g~div 235 (427)
T PRK07049 173 GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ--K--PL-------------EHGADLS 235 (427)
T ss_pred CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC--C--cc-------------ccCCCEE
Confidence 478999999999999999998888888887654 68999999998753221 1 11 1134688
Q ss_pred EecCccccC-CCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 87 i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+.|+||++| ++|+|+||+++++ .+.+.+...... ...+++.+.++...++. +..+.++..++++.+.+.
T Consensus 236 v~S~SK~~gG~~glr~G~vv~~~-~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t-------l~~R~~~~~~~a~~la~~ 307 (427)
T PRK07049 236 VYSLTKYVGGHSDLVAGAVLGRK-ALIRQVRALRSAIGTQLDPHSCWMLGRSLET-------LVLRMERANRNARAVAEF 307 (427)
T ss_pred EEcCceeecCCCCcEEEEEECCH-HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHH
Confidence 899999998 6899999999864 454544444332 23667777777776653 344445558888999999
Q ss_pred HHhc
Q 044773 164 LEKA 167 (289)
Q Consensus 164 l~~~ 167 (289)
|+++
T Consensus 308 L~~~ 311 (427)
T PRK07049 308 LRDH 311 (427)
T ss_pred HHhC
Confidence 9987
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-18 Score=154.13 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=141.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++.+ .+.++++.|
T Consensus 163 ~~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~----g~~~~~~~~------------~~~D~~~~s 223 (406)
T PRK09295 163 ERTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAV----MHHPVDVQA------------LDCDFYVFS 223 (406)
T ss_pred CCcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEccccc----CccccCchh------------cCCCEEEee
Confidence 47899999999999999999 88899999999999999999974 222233322 245688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc----------------------c--ccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM----------------------S--SFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~----------------------~--~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
++|.+|.+| +||++++++.+. .+... . ..++.+.....++..+++... +.-
T Consensus 224 ~~K~~gp~G--~G~l~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g 298 (406)
T PRK09295 224 GHKLYGPTG--IGILYVKEALLQ-EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVS--ALG 298 (406)
T ss_pred hhhccCCCC--cEEEEEchHhHh-hCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHH--HhC
Confidence 999888556 899999655432 22100 0 012234455555555554321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-- 220 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-- 220 (289)
.++..++.++..+++.+.|.+. ++++..+. .+++ .+.++.. . ..++... ++++||.+..|..|...
T Consensus 299 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv-~~~~~~~-~------~~~~~~~-L~~~gI~v~~g~~c~~~~~ 369 (406)
T PRK09295 299 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVI-AFNLGKH-H------AYDVGSF-LDNYGIAVRTGHHCAMPLM 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEE-EEEECCc-C------HHHHHHH-HHhCCeEEeccccchHHHH
Confidence 4566778888889999999877 67776553 4433 3445431 1 1235454 56889999998866421
Q ss_pred ----CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 221 ----EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 221 ----~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
.++.+|+|+.. ++++|++.+++.|+++.+
T Consensus 370 ~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 370 AYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 24689999975 799999999999988643
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=154.99 Aligned_cols=210 Identities=13% Similarity=0.220 Sum_probs=139.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|. ..++++|+++|+++|+++|+|++|....+ .. ++ ..+.+++++|
T Consensus 135 ~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~-~~---p~-------------~~g~di~i~S 194 (366)
T PRK08247 135 PNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVL-QR---PL-------------EEGADIVIHS 194 (366)
T ss_pred cCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccc-cC---ch-------------hcCCcEEEee
Confidence 47899999999999754 56699999999999999999999953211 11 11 1245699999
Q ss_pred CccccCC-CCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGL-PGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~-~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++. ++++.|+++++++.+.+.+...... ...++..+..+...++. +..+.+..+++++.+.+.|++
T Consensus 195 ~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-------l~~r~~~~~~~a~~l~~~L~~ 267 (366)
T PRK08247 195 ATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-------LALRMRQHEENAKAIAAFLNE 267 (366)
T ss_pred cceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 9999963 3579999999756665554433222 22556666666665553 234445568999999999998
Q ss_pred c-CCc-e-ecCCceEEEEEecCccccCCChhhH---HHHHHHHHHhcCeEEeCCCCCCC-----------CCCCeEEEEE
Q 044773 167 A-GIS-C-LKSNAGLFCWVDMRHLLSSNTFEAE---MELWKKIVYDVKLNISPGSSCHC-----------TEPGWFRVCF 229 (289)
Q Consensus 167 ~-g~~-~-~~~~~g~~~~i~~~~~~~~~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~-----------~~~~~~Ris~ 229 (289)
+ ++. + .++.||++.| .+........+.+. ..++..|.....+.+.|+..+.. .+++.+|||+
T Consensus 268 ~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~sv 346 (366)
T PRK08247 268 QPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSV 346 (366)
T ss_pred CCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 7 665 3 4448898887 55321000000010 11233333455677788865532 1246899999
Q ss_pred ecCCHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+. |+.+.+++.|.++++.
T Consensus 347 Gl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 347 GI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred cc---CCHHHHHHHHHHHHhh
Confidence 96 7778888888887764
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-18 Score=155.52 Aligned_cols=223 Identities=17% Similarity=0.150 Sum_probs=143.0
Q ss_pred hHHHhhhC-CCccEEEEe-CCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVT-NPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~-~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+ .++++|++. +|+| +|.+++ .+.+++|.++|+++++++|+||+|.++.+ +..+. .+....
T Consensus 185 l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~-g~~~~--~~~~~~------ 254 (423)
T TIGR00713 185 LEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV-ALGGA--QEYFGV------ 254 (423)
T ss_pred HHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc-Ccchh--HHHhCC------
Confidence 34555433 357777775 6678 788887 68999999999999999999999998733 33221 122110
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
..+ +.+|||.++ +|+|+||+++++ .+.+.+.. ....+..+++.+.++.+.++...- ....+..++..
T Consensus 255 -~pD----i~t~sK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 326 (423)
T TIGR00713 255 -EPD----LTTLGKIIG-GGLPVGAFGGRR-EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELA 326 (423)
T ss_pred -Ccc----hhhhhhhhc-CCCceeeeeEHH-HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 112 458999999 999999999964 45554432 112334788888887777763221 22455666667
Q ss_pred HHHHHHHHHHHHhcCCcee-cCCceEE-EEEecCcccc-----CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 154 KQRHRKLVSGLEKAGISCL-KSNAGLF-CWVDMRHLLS-----SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 154 ~~~~~~l~~~l~~~g~~~~-~~~~g~~-~~i~~~~~~~-----~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+++++.+.+.++++++... .+.|+++ +++......+ .........++..++ ++||.+.++ .| +.+|
T Consensus 327 ~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-~~-----~~~~ 399 (423)
T TIGR00713 327 KRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPS-QF-----EACF 399 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecC-Cc-----ccee
Confidence 7777778888877776543 2344433 3333221100 000011224666777 579998754 22 2478
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+++. ++++++++++++|.+++++
T Consensus 400 l~~~-~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 400 LSAA-HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred eECC-CCHHHHHHHHHHHHHHHhh
Confidence 9887 5999999999999988864
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=154.09 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=143.4
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... .++.+|++..++|++|.+++++ .+++|.++|++||+++|+||+|.+++++|..+. .++.
T Consensus 214 l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a--~~~~--------- 282 (474)
T PLN02624 214 LEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLA--CDWE--------- 282 (474)
T ss_pred HHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhh--HHhc---------
Confidence 45556433 4677888888899999988776 599999999999999999999998766554221 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
+....+.++||.+|.+++++|++++++ .+.+.+.... ..+..+++.+.++.+.|+... + ....+++.++.
T Consensus 283 --~i~pDiv~lsK~lggG~~pigav~~~~-~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~---~--~~l~~~~~~~~ 354 (474)
T PLN02624 283 --EVRPDVVILGKALGGGVIPVSAVLADK-DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQ---D--EKLAERSAKLG 354 (474)
T ss_pred --CCCCCEEEecccccCCCCcceeeeecH-HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--chHHHHHHHHH
Confidence 112225557999996669999999964 4444343222 222367888888877776321 1 11223333444
Q ss_pred HHHHHHHHhc----C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-
Q 044773 158 RKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA- 230 (289)
Q Consensus 158 ~~l~~~l~~~----g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~- 230 (289)
+++.+.|+++ . +....+.|. +..+.+...... .....+++..|. ++||.+.|+. .+++||++.
T Consensus 355 ~~l~~~L~~l~~~~~~~i~~vrg~G~-~~~i~l~~~~~~--~~~a~~~~~~L~-e~GV~v~p~~------~~~lR~~p~l 424 (474)
T PLN02624 355 QELRDQLQKIQKQFPKLIKEVRGRGL-LNAVVLNSPKLG--PVSAYDVCLKLK-ERGLLAKPTH------DTIIRLAPPL 424 (474)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeeEE-EEEEEecCCCcC--hHHHHHHHHHHH-hCCeEEecCC------CCEEEEECCc
Confidence 4444444432 1 222334444 444445432100 122346777765 6799998852 468999983
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 231 NMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 231 ~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.++++++++++++|.++++.....+
T Consensus 425 ~~t~e~id~~l~~L~~~l~~~~~~~ 449 (474)
T PLN02624 425 SISEDELQECSKALSDVLEHDLPKL 449 (474)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999999988765544
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=152.60 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=138.9
Q ss_pred ccEEEEeCCC-CCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 12 VKGVLVTNPS-NPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 12 ~~~i~l~~p~-NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.-+.++..|- .-.|.++ +.+.+++|.++|+++|+++|+||+|.++.+++.. .++..+ +....+.|
T Consensus 219 ~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~-~a~~~~------------~v~pDi~t 285 (451)
T PRK06918 219 TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY-FAIEHF------------DVVPDLIT 285 (451)
T ss_pred ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCce-ehhHhc------------CCCCCEEe
Confidence 3444667784 3346644 5666999999999999999999999998776643 232222 11122668
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|||.++ +|+|+||+++++ .+.+.+... ...+..+++.+.++.+.++ +..+ .+..++..+.+.++.+.+.+
T Consensus 286 ~sK~l~-~G~pig~v~~~~-~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~~l~~l~~-- 360 (451)
T PRK06918 286 VSKSLG-AGVPISGVIGRK-EIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENL-NDRAIELGKVVMNRFEEMKN-- 360 (451)
T ss_pred eehhhc-CCCccEEEEEcH-HHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHh--
Confidence 999999 999999999964 444444322 2234478888888555554 3333 44555555555554443333
Q ss_pred HhcC-CceecCCceEEEEEecCccc-cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 165 EKAG-ISCLKSNAGLFCWVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 165 ~~~g-~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+++ +....+.|+++.|.-..+.. ..........+...++ ++||.+.|+..|+ +++||+++. ++++++++++
T Consensus 361 -~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~Gvlv~~~~~~~----~~lrl~p~l~~t~~~id~~l 434 (451)
T PRK06918 361 -KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEAN-KRGLLLLSAGTYG----NVIRVLMPLVITDEQLEEGL 434 (451)
T ss_pred -hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHH-HCCeEEeecCCCC----CEEEEECCCccCHHHHHHHH
Confidence 222 22344667777765432210 0111112234555554 6799999986664 589999965 7899999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|.+++++..
T Consensus 435 ~~l~~~l~~~~ 445 (451)
T PRK06918 435 TIIEESLQACY 445 (451)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=147.37 Aligned_cols=230 Identities=12% Similarity=0.072 Sum_probs=175.3
Q ss_pred hHHHhhhCC--CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL--KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~--~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
|++++...+ -+|+|-..+.+..+|.+.+ |++|++++++||++.++||+|.- ++.|+....+.+.-+ -
T Consensus 292 L~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAV-GlYG~rGaGvgerdG-------v 360 (570)
T KOG1360|consen 292 LEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAV-GLYGPRGAGVGERDG-------V 360 (570)
T ss_pred HHHHHHhCCCCCCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhh-ccccCCCCCccccCC-------c
Confidence 566666654 4889999999999999999 99999999999999999999984 454555555555522 2
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQ-NYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 157 (289)
+...+++.|++.|+||+-| |||.+. ..+.+.++.+ .+|.+.+++...+++.+++..+++. ++.+.+|+..+++.
T Consensus 361 m~kvDiIsGTLgKafGcVG---GYIAat-~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv 436 (570)
T KOG1360|consen 361 MHKVDIISGTLGKAFGCVG---GYIAAT-RKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNV 436 (570)
T ss_pred chhhhhcccchhhhccccc---ceehhh-hhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5677799999999999999 999995 4555555554 5565566667777777777665532 23567788889999
Q ss_pred HHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHH
Q 044773 158 RKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSED 235 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e 235 (289)
+++++.|.+.|+.+.+..+. ++-+.+.+...+ .+.+..|+.++||+++.-.+... .+...+||++. .++++
T Consensus 437 ~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~l~------~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~ 509 (570)
T KOG1360|consen 437 KYVKQLLMELGIPVIPNPSH-IIPVRVGDAALA------KQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQ 509 (570)
T ss_pred HHHHHHHHHcCCcccCCCcc-eeeeeccCHHHH------HHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHH
Confidence 99999999999999988775 444666654332 46888899999999985433322 34567999984 37999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~~ 253 (289)
-++.+++.+..++.+...
T Consensus 510 mm~~lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 510 MMNILVNALLDVWNEVGL 527 (570)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999888754
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=154.29 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=144.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++.++ +.++++.|
T Consensus 172 ~~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~------------~~d~~~~s 232 (424)
T PLN02855 172 EKTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTL------------GADFLVAS 232 (424)
T ss_pred cCceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhc------------CCCEEEee
Confidence 47899999999999999999 78899999999999999999963 2222232222 44688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--------------------c---ccCCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--------------------S---SFGLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------------------~---~~~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.+|.+| +||++++++.+. .+... . ..++.+.....++..+++... +..+
T Consensus 233 ~~K~~gp~G--~G~l~~~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~ 307 (424)
T PLN02855 233 SHKMCGPTG--IGFLWGKSDLLE-SMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS--EIGM 307 (424)
T ss_pred cccccCCCc--cEEEEEchhhhh-cCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH--HhCH
Confidence 999777445 899999655432 22211 0 011123344444555554221 2235
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCc------eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNA------GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~------g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++.+++.++..+++.+.|.++ |+++..+.. +.++.+.++.. . ..++...|.+++||.+..|..|..
T Consensus 308 ~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-~------~~~v~~~L~~~~gI~v~~g~~c~~ 380 (424)
T PLN02855 308 DRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-H------PTDLSTFLDQQHGVAIRSGHHCAQ 380 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-C------HHHHHHHhcccCCEEEechhhhhH
Confidence 677788888899999999877 777764321 22444555531 1 135677776556999998876532
Q ss_pred ------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 220 ------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..++++|+|+.. ++++|++.+++.|++++....
T Consensus 381 ~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 381 PLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred HHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 114689999965 799999999999999887643
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=152.38 Aligned_cols=212 Identities=13% Similarity=0.172 Sum_probs=146.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++++|+++.. +....++. ..+.++++.|
T Consensus 139 ~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~----g~~~~~~~------------~~~~D~~~~s 199 (382)
T TIGR03403 139 EKTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDAVQAI----GKIPVDVQ------------KAGVDFLSFS 199 (382)
T ss_pred cCCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEechhhc----CCCccCcc------------ccCCCEEEEc
Confidence 46899999999999999999 78899999999999999999873 22222222 2245588899
Q ss_pred CccccCCCCceEEEEEecCHHH-HHHHH-----hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTV-VAAAT-----KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~-~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
++|.+|.+| +|++++++... ...+. .....++.+.+.+.++..+++.. .+.++...+++++.++++.+.
T Consensus 200 ~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~ 274 (382)
T TIGR03403 200 AHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA---NEYLDFEKSHVRRLRDRLEDA 274 (382)
T ss_pred chhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 999888667 68887754321 01110 00123446667777777777532 445677788999999999999
Q ss_pred HHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------------CC
Q 044773 164 LEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----------------EP 222 (289)
Q Consensus 164 l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~ 222 (289)
|.++ ++++..+.. +.++.+.+.. .. ...+...| .++||.+..|..|... ..
T Consensus 275 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~ 346 (382)
T TIGR03403 275 LLELPDVFVVGDREHRVPNTILISIKG-VE------GEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAH 346 (382)
T ss_pred HhcCCCEEEECCCCCCcCCEEEEEeCC-CC------HHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhC
Confidence 9876 677766531 2233455542 11 13455554 5779999988766311 12
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+.+|+|+.. ++++|++++++.|++++++...
T Consensus 347 ~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 347 TAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 579999965 8999999999999998887553
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-17 Score=148.96 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=141.2
Q ss_pred CccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|++...++..|. +++.+.+++|.++|+++|+++|+||+|.++.++|..+ ... .. +....+.+
T Consensus 198 ~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~-~~~-~~-----------~~~pDiv~ 264 (421)
T PRK06777 198 QVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AME-YY-----------DVKPDLIT 264 (421)
T ss_pred ceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh-hhh-hc-----------CCCCCEEe
Confidence 4555454433777885 6789999999999999999999999999886666422 211 11 11112447
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.++ +|+|+||++++ +.+.+.+... ...+..|++.+.++.+.|+... + ....++++++.+++.+.|+++
T Consensus 265 ~sK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~---~--~~l~~~~~~~g~~l~~~L~~l 337 (421)
T PRK06777 265 MAKSLG-GGMPISAVVGR-AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA---E--EKLCQRALILGAHLVEVLEKA 337 (421)
T ss_pred eehhhc-CCCceEEEEEc-HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999996 4555544322 2233478899998888886322 1 345566666677777777654
Q ss_pred ----C-CceecCCceEEEEEecCccc-cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 168 ----G-ISCLKSNAGLFCWVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 168 ----g-~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+ +....+.|.++. +.+.... ......-...+...++ +.||.+.|+..|+ +++||+++. .++++++++
T Consensus 338 ~~~~~~i~~vrg~G~~~~-i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~~~~g----~~lr~~ppl~i~~~~i~~~ 411 (421)
T PRK06777 338 KASCPAIVDIRARGSMVA-VEFNDPQTGKPSPEFTRQYQRQAL-EEGLLLLSCGVHG----NVIRFLYPLTIPDAQFSKA 411 (421)
T ss_pred HHhCCCeEEecCceEEEE-EEEecCccCCccHHHHHHHHHHHH-hCCeEEeecCCCC----CEEEEeCCCCCCHHHHHHH
Confidence 2 334567776665 4333211 1111111123444444 6799999987665 489999953 699999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|.+++.
T Consensus 412 ~~~l~~~l~ 420 (421)
T PRK06777 412 LNILTRLLA 420 (421)
T ss_pred HHHHHHHHh
Confidence 999998863
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-17 Score=147.97 Aligned_cols=222 Identities=17% Similarity=0.132 Sum_probs=154.8
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+ +++++|++++++||||.+++.+++.++++ |+++|+++|+|++++. +....++.
T Consensus 126 l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~----g~~~id~~------------ 188 (401)
T PLN02409 126 LKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSI----GALDFRMD------------ 188 (401)
T ss_pred HHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEccccc----CCcccccc------------
Confidence 44555542 37899999999999999999555555555 9999999999999872 22222222
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----------------c-c--cCCCChHHHHHHHHHhCCc
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----------------S-S--FGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----------------~-~--~~~~~~~~q~~~~~~l~~~ 139 (289)
.++.++++.|.+|+++.| .++||++++++.+ +.+... . . .++++...+.++..+++..
T Consensus 189 ~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~ 266 (401)
T PLN02409 189 EWGVDVALTGSQKALSLP-TGLGIVCASPKAL-EASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLI 266 (401)
T ss_pred ccCccEEEEcCccccCcC-CCcceeEECHHHH-HHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Confidence 235568888889999643 3699999965544 333211 0 0 1123345556666666532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 215 (289)
. +.-.++.+++++++.+++.+.|++.|+++..++ .+...++.+++..+. .++...+++++||.+.+|.
T Consensus 267 ~--~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~------~~l~~~l~~~~~i~i~~G~ 338 (401)
T PLN02409 267 F--EEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDS------AEIVKNAWKKYNLSLGLGL 338 (401)
T ss_pred H--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCH------HHHHHHHHHhCCEEEEcCC
Confidence 1 333677889999999999999988888876542 223455666644332 4577788889999999887
Q ss_pred CCCCCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHHHHH
Q 044773 216 SCHCTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 216 ~f~~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.- .....|||+. +.++.+++..++.+|.+++.+..
T Consensus 339 ~~--~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 339 NK--VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred Cc--ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 52 2357899999 55899999999999999988765
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-17 Score=148.65 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=137.8
Q ss_pred CCccEEEEeCC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNP-SNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~ 86 (289)
.++.+|+++ | +||+|.+++ .+.+++|.++|+++|+++|+||+|.+++++|..+.. ...+ ..+
T Consensus 203 ~~iAAvi~e-P~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~----------~pD---- 267 (443)
T PRK08360 203 EGVAALFAE-PIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV----------EPD---- 267 (443)
T ss_pred CCeEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC----------CCC----
Confidence 467776665 6 799999887 558999999999999999999999988666643211 1112 112
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+.++||++| +|+|+||++++ +.+.+.+... ......+++.+.++.++++...- + ...++++++.+++.+.|
T Consensus 268 iitlsK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~----~l~~~~~~~g~~l~~~L 340 (443)
T PRK08360 268 IITLGKPLG-GGLPISATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-K----NLLKRAEKLGNYTKKRL 340 (443)
T ss_pred EEEeccccc-CCceeEEEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-c----CHHHHHHHHHHHHHHHH
Confidence 347899999 99999999995 4455555432 22233677888887777764321 1 23344455555555555
Q ss_pred Hhc----CCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 165 EKA----GISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 165 ~~~----g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
+++ ++......-|.++-+++.+... .........+...++ ++||.+.+.. ...+|++++. ++++++
T Consensus 341 ~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~lr~~P~l~~t~~~i 413 (443)
T PRK08360 341 EEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFFS------GNVLRIQPPLTIEKEVL 413 (443)
T ss_pred HHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeecC------CCEEEEeCCCCCCHHHH
Confidence 443 2211122234555566543211 111122234666665 6799986531 3579998854 799999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDSITT 253 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~~ 253 (289)
+++++++.+++.....
T Consensus 414 d~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 414 DEGLDILEEAIEDVEE 429 (443)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987643
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-17 Score=145.39 Aligned_cols=208 Identities=13% Similarity=0.132 Sum_probs=128.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++++++|+|++|.. +....+..++ +.+++++|
T Consensus 138 ~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~----g~~~~~~~~~------------~~d~~~~s 198 (361)
T cd06452 138 KPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTV----GRMPVSGKEL------------GADFIVGS 198 (361)
T ss_pred CCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCccc----CCcCCCHHHc------------CCCEEEec
Confidence 36899999999999998866 88999999999999999999983 2211222222 45689999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCC--------C--hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV--------S--SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~--------~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+||+++ ++.|+||++++++ +.+.+......+.. + ......+...+.. +.+++++..+. .++.++
T Consensus 199 ~~K~l~-~~~~~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~-~~~~~~ 272 (361)
T cd06452 199 GHKSMA-ASAPIGVLATTEE-WADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWDEE-VEKARW 272 (361)
T ss_pred CCcccc-CCCCeEEEEECHH-HHHHHhccccccccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHHHH-HHHHHH
Confidence 999998 5669999999654 44444332211111 1 1122222222221 12333333333 334578
Q ss_pred HHHHHHhc-CCceec--CCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCH
Q 044773 160 LVSGLEKA-GISCLK--SNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234 (289)
Q Consensus 160 l~~~l~~~-g~~~~~--~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~ 234 (289)
+.+.|+++ |+++.. +....++.++.+..... .......++...|+ ++||.+.+ . ....++|++....++
T Consensus 273 l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~---~--~~~~~~ri~~~g~~~ 346 (361)
T cd06452 273 FVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELK-KRGIHGIK---P--GLTRYFKLSTYGLTW 346 (361)
T ss_pred HHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHH-HcCceEEc---C--CCceEEEEEecCCCH
Confidence 99999988 888752 22233455565421000 00011124677775 56998532 1 224589999933589
Q ss_pred HHHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAFV 248 (289)
Q Consensus 235 e~l~~~l~~l~~~l 248 (289)
++++.+++.|++++
T Consensus 347 e~~~~l~~al~~~~ 360 (361)
T cd06452 347 EQVEYVVDAFKEIA 360 (361)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-17 Score=147.77 Aligned_cols=214 Identities=18% Similarity=0.181 Sum_probs=142.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++. +++++|+++.++++.|... +.+.+++|.++|++||+++|+||+|.+++.+|..+ .. +. .
T Consensus 173 ~~~l~--~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~-~~-----------~ 237 (397)
T TIGR03246 173 KALIS--DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AY-MH-----------Y 237 (397)
T ss_pred HHHhc--cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hh-hh-----------c
Confidence 44443 3577777774466667654 88999999999999999999999998876655432 11 11 1
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+....+.++||.+| +|+++||++++ +.+.+.+.... ..+..+++.+.++.+.++... -.+..+.++++.++
T Consensus 238 gv~pDi~t~~K~lg-gG~pigav~~~-~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~-----~~~l~~~~~~~~~~ 310 (397)
T TIGR03246 238 GVTPDILTSAKALG-GGFPIGAMLTT-TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN-----TPELLAGVKQRHDL 310 (397)
T ss_pred CCCCCEEEeehhhh-CCcceeEEEEc-HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh-----hccHHHHHHHHHHH
Confidence 12233458999998 89999999995 44555554321 223367788777777776421 13456778888888
Q ss_pred HHHHHHhcC--C---ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 160 LVSGLEKAG--I---SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 160 l~~~l~~~g--~---~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+.+.|++++ . ....+. |.++.+.+..... .....++..|+ ++||.+.+. +.+++|++++. ++
T Consensus 311 l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~------g~~~lR~~p~~~~t 378 (397)
T TIGR03246 311 FVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAYQ----GKAKQFVNAAA-EEGVIALIA------GPNVVRFAPSLVIS 378 (397)
T ss_pred HHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCchh----hHHHHHHHHHH-HCCeEEeec------CCCEEEEeCCCCCC
Confidence 888887753 1 112233 3444455532111 12345777776 569998763 23689998743 79
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|.+++++
T Consensus 379 ~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 379 DDDIDEGLARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988864
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-17 Score=146.75 Aligned_cols=218 Identities=16% Similarity=0.142 Sum_probs=145.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCC--HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMS--RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~--~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++. ++..+.++..|.+++|-+++ .+.+++|.++|+++++++|+||+|.+++.+|.. +...
T Consensus 179 l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~a~~--------- 243 (408)
T PRK04612 179 LEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL----FAHW--------- 243 (408)
T ss_pred HHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch----hhhh---------
Confidence 344443 23456688889777776665 679999999999999999999999987665532 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..+.++.+.+|||.+| +|+|+||++++++ +.+.+... ...+..+++.+.++.+.|+... + ....++++++.
T Consensus 244 ~~~~~pdi~t~~K~l~-~G~piga~~~~~~-~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~---~--~~l~~~~~~~g 316 (408)
T PRK04612 244 QEQVTPDIVTLAKALG-GGFPIGAMLAGPK-VAETMQFGAHGTTFGGNPLAAAVARVALRKLA---S--PQIAANVARQS 316 (408)
T ss_pred hcCCCCCEEEEcchhc-CCCceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHH
Confidence 2255677899999998 8999999999644 45444332 2223377888888888876432 1 23455556666
Q ss_pred HHHHHHHHhc----CCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-
Q 044773 158 RKLVSGLEKA----GIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~----g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~- 231 (289)
+++.+.|+++ ++. ...+. |.++.+.+..... ....++...+. ++||.+.|. +...+|+.+..
T Consensus 317 ~~l~~~l~~l~~~~~~i~~vrg~-Gl~~~i~~~~~~~----~~a~~i~~~l~-~~Gvlv~~~------g~~~lRl~Ppl~ 384 (408)
T PRK04612 317 AALRAGLEALNAEFGVFAQVRGR-GLMLGAVLAPAHA----GQAGAILDLAA-EHGLLLLQA------GPDVLRFVPALN 384 (408)
T ss_pred HHHHHHHHHHHhhCCCeeeeecc-ceEEEEEecCchh----hHHHHHHHHHH-HCCeEEeeC------CCCEEEEcCCcc
Confidence 6666666554 221 22333 4555566542111 11234566555 779999763 23689999854
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.++++++++++++.+++.+..+
T Consensus 385 it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 385 LTDAELADGLARLRLALADYVA 406 (408)
T ss_pred CCHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999987543
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=148.34 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=132.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|.. +.....+.+ .+.++++.|
T Consensus 155 ~~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~~~------------~~~d~~~~s 215 (397)
T TIGR01976 155 PRTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----PHGLIDVQA------------TGADFLTCS 215 (397)
T ss_pred CCceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----cccCCCHHH------------cCCCEEEEe
Confidence 46899999999999999998 99999999999999999999852 222223222 245577899
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-cc-----------CCCChHHHHHHHHHhCCchH------------HHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF-----------GLVSSQTQYLLSALLSDKKF------------AQNY 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~-----------~~~~~~~q~~~~~~l~~~~~------------~~~~ 145 (289)
++|.+| + |+|+++++++.+ +.+.... .+ ++.+.....++..+++.... +...
T Consensus 216 ~~K~~g-~--~~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~ 291 (397)
T TIGR01976 216 AYKFFG-P--HMGILWGRPELL-MNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVAS 291 (397)
T ss_pred chhhcC-C--ceEEEEEcHHHH-hhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHH
Confidence 999986 3 589999965543 3322111 00 11222222333333221100 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAG-ISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
.++.+++..+..+++.+.|++++ +++..+ .++ ++.+.++.. + ..++.+.|. ++||.+..|..|..
T Consensus 292 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~------~~~l~~~L~-~~gI~v~~~~~~~~ 362 (397)
T TIGR01976 292 FQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-P------PQRVVRRLA-DQGIDAWAGHFYAV 362 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-C------HHHHHHHHH-HCCeEEEeCccchH
Confidence 56677788888899999998874 777654 334 444555421 1 134666664 67999998876641
Q ss_pred ---------CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 220 ---------TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 220 ---------~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
...+++|||+.. ++++|++.+++.|
T Consensus 363 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 363 RLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 134689999954 7999999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-17 Score=147.08 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=145.2
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. ++++++++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++.+ .+
T Consensus 130 ~~~i~--~~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~------------~~ 188 (379)
T TIGR03402 130 RAAIT--DDTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAV----GKIPIDLKE------------MN 188 (379)
T ss_pred HHhcC--CCcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccc----cccccCccc------------CC
Confidence 44443 46899999999999999999 77899999999999999999973 332233222 24
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHH-HH-----HhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA-AA-----TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~-~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.++++.|.+|.+|.+| +|++++++..... .. ......++.+.....++..+++. +.+++++..++++++
T Consensus 189 ~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l 263 (379)
T TIGR03402 189 IDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAEL---ATEHLEEENTRVRAL 263 (379)
T ss_pred CCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Confidence 5588889999666455 8888876442111 00 00011233444555555555543 245677777889999
Q ss_pred HHHHHHHHHh-c-CCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC---------
Q 044773 157 HRKLVSGLEK-A-GISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--------- 220 (289)
Q Consensus 157 ~~~l~~~l~~-~-g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--------- 220 (289)
++++.+.|.+ . ++++..+. +.+.+++... + ..++...| +++||.+.+|..|...
T Consensus 264 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~ 333 (379)
T TIGR03402 264 RDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---E------GEAILLLL-DMEGICASSGSACTSGSLEPSHVLR 333 (379)
T ss_pred HHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---C------HHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHH
Confidence 9999999875 4 66665432 2233444321 1 13466554 5789999999877542
Q ss_pred --------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 --------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 --------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.+|+|++. ++++|++.+++.|++++++...
T Consensus 334 ~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 334 AMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 13689999965 7999999999999998877543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=148.37 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=137.9
Q ss_pred CccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++...+++.|. +.+.+.+++|.++|+++|+++|+||++.+++.+|..+.. ...+.+ | +.
T Consensus 194 ~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~P----------D----i~ 259 (412)
T TIGR02407 194 LPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP----------D----IV 259 (412)
T ss_pred ceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCC----------C----EE
Confidence 3456554433888888 678999999999999999999999999987666543211 112211 2 55
Q ss_pred cCccccCCC-CceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHH---H-HhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLP-GFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLS---A-LLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 89 s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~---~-~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
++||.+| + |+|+|+++++++ + +.+.. ....+..|++...++. . ++++.++ .++++++.+.++++.+.+.
T Consensus 260 ~~~K~lg-~~G~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l-~~~~~~~g~~l~~~l~~l~ 335 (412)
T TIGR02407 260 CLSKSIS-GYGLPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF-EKAVQRKSEIIQERLDRIV 335 (412)
T ss_pred Eechhcc-CCccceeEEEEchh-h-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHH
Confidence 7899998 6 999999999655 3 32221 1122235666444322 2 3555544 5666666666666655544
Q ss_pred HHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 162 SGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 162 ~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+.+.. +.......|+++|+.+++.. ....+...++ +.||.+.+...+ ...+||+++. +++++++.+
T Consensus 336 ~~~~~--~~~~vrg~Gl~~~l~l~~~~------~~~~~~~~~~-~~Gv~v~~~~~~----~~~lr~~p~l~~t~~~i~~~ 402 (412)
T TIGR02407 336 AEYPE--LIKQVRGRGLMQGIECGDGD------LAGKIAKAAF-ENGLIIETSGPN----DEVIKLLPPLTIDEETLQQG 402 (412)
T ss_pred hhCCC--ceEeeecceeEEEEEecChH------HHHHHHHHHH-HCCCEEeccCCC----CCEEEEECCCCCCHHHHHHH
Confidence 44432 23445566889999987531 1234666665 679999875322 3579999964 799999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
++++.++++
T Consensus 403 ~~~l~~~l~ 411 (412)
T TIGR02407 403 LDILEQAVE 411 (412)
T ss_pred HHHHHHHHh
Confidence 999999875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=143.60 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=138.1
Q ss_pred CccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++... +| +| ..++.+.+++|.++|++||+++|+||+|.+++.+|..+ . . +..+.+..+.
T Consensus 198 ~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-a---~---------~~~gv~pDi~ 263 (425)
T PRK07495 198 RVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-A---M---------EHHEVAADLT 263 (425)
T ss_pred ceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-e---e---------cccCCCCCEE
Confidence 4666544433 45 78 56799999999999999999999999999876665431 1 1 1224556689
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLS---DKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+|||.++ +|+|+|++++++ .+.+.+.. ....+..|++.+.++.+.++ +.++ .++.+++.+.++++.+.+.+.
T Consensus 264 tlsK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~~l~~~ 340 (425)
T PRK07495 264 TMAKGLA-GGFPLAAVTGRA-EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL-CERANQLGNRLKQRLASLRET 340 (425)
T ss_pred eehhhhc-CCccceEEEEcH-HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 899999999954 44444332 22233478888885555544 3333 444444455554444433332
Q ss_pred HHhcCCceecCCceEEEEEecCccccCC-ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLSSN-TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+ +.......-|+++|+.+.+..... .......+...++ ++|+.+.+.... .+.+||.++. .+++++++++
T Consensus 341 ~---~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g~~----~~~~r~~Ppl~it~~~id~~~ 412 (425)
T PRK07495 341 V---PEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCGVH----GNVIRFLAPITIQDDVFAEAL 412 (425)
T ss_pred C---CCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecCCC----CCEEEEeCCCccCHHHHHHHH
Confidence 2 211111122789999885432111 1111234555555 679998754221 3579999854 7999999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|.+++++..
T Consensus 413 ~~l~~~l~~~~ 423 (425)
T PRK07495 413 DILEASILEAS 423 (425)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-16 Score=140.71 Aligned_cols=132 Identities=17% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|... +. .. .+ ..+.++++.|
T Consensus 129 ~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~-~~---~~---~l----------~~~~divv~S 188 (376)
T PRK06460 129 KRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTP-IN---QK---PL----------ELGADIVVHS 188 (376)
T ss_pred CCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcc-cc---CC---hh----------hcCCCEEEee
Confidence 57899999999999999999 677899999999999999999742 11 11 11 1245689999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||+++ ..+.+.||+++++ .+.+.+.........+. ....+..++.. .++++.+.+++.++++++.+.|+++
T Consensus 189 ~sK~l~G~~~~~~G~~~~~~-~l~~~l~~~~~~~g~~~-~~~~a~~~l~~----~~~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 189 ASKFLAGHNDVIAGLAAGYG-KLLNVIDQMRRTLGTSL-DPHAAYLTLRG----IKTLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred cceeccCCCCceEEEEecCH-HHHHHHHHHHHhcCCCC-CHHHHHHHHhc----hhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999995 2347899999854 45555544332222221 22334444454 3446777888889999999999876
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=145.51 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=134.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++++++++|++|... ....++.+ .+.++++.|
T Consensus 138 ~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~----~~~~~~~~------------~~~d~~~~s 198 (373)
T cd06453 138 ERTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAG----HMPVDVQD------------LGCDFLAFS 198 (373)
T ss_pred CCceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcC----ceeeeccc------------cCCCEEEec
Confidence 47899999999999999999 889999999999999999998732 11112111 234577889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc---------------------cc--CCCChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------------------SF--GLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------------------~~--~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
++|.++. .++|+++++++.+ +.+.... .+ +.++.....++..+++... +..+
T Consensus 199 ~~K~~~~--~g~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~--~~g~ 273 (373)
T cd06453 199 GHKMLGP--TGIGVLYGKEELL-EEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE--KIGM 273 (373)
T ss_pred cccccCC--CCcEEEEEchHHh-hcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH--HcCH
Confidence 9999974 5689999965443 3222111 01 1123334444444443211 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---- 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---- 219 (289)
++..++.+++++++.+.|.++ ++++..+. .+.++++.++.. +..++.+.|. ++||.+.+|..+..
T Consensus 274 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~-~~gi~i~~g~~~~~~~~~ 345 (373)
T cd06453 274 EAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILD-QYGIAVRAGHHCAQPLMR 345 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHH-HCCEEeccCccchhHHHH
Confidence 667777888889999999887 67765322 133555665431 1235666665 67999988876532
Q ss_pred --CCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 220 --TEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 220 --~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
...+++|++++. +++++++++++.|
T Consensus 346 ~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 346 RLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 125789999975 7999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=144.90 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=137.0
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ....|.+ .+++++++|.++|++||+++|+||+|.+++.+|..+.. +. .+....+.
T Consensus 207 ~~aa-vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~--~~-----------~gv~pDi~ 272 (433)
T PRK08117 207 EVAA-VIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA--QT-----------FGVVPDIM 272 (433)
T ss_pred cEEE-EEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhH--hh-----------cCCCCCEe
Confidence 4545 55556 5556765 47889999999999999999999999987666653221 11 12223367
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.+| +|+++|++++++ .+.+.+... ...+..|++.+.++.+.|+.... ....++++++.+++.+.|++
T Consensus 273 t~sK~lg-~G~pigav~~~~-~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L~~ 345 (433)
T PRK08117 273 TIAKGIA-SGLPLSAVVASK-ELMEQWPLGSHGTTFGGNPVACAAALATLEVIKE-----EKLLDNANEMGAYALERLEV 345 (433)
T ss_pred ehhhhcc-CCCcceeEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHH
Confidence 9999999 899999999964 444433221 12233688888888888774321 12334445555555555554
Q ss_pred c----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHH
Q 044773 167 A----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSM 241 (289)
Q Consensus 167 ~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l 241 (289)
+ ++.......|.++++.+..............+...++ ++||.+.+... ....+||+++ .++++++++++
T Consensus 346 l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g~----~~~~lRl~p~~~~t~~~i~~~~ 420 (433)
T PRK08117 346 LKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCGN----AGNVLRMIPPLTVTKEEIDEGL 420 (433)
T ss_pred HHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecCC----CCCEEEEeCCccCCHHHHHHHH
Confidence 3 3222233445666777754321111112234555555 67998876321 2468999973 47999999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
++|.+++++.
T Consensus 421 ~~l~~~l~~~ 430 (433)
T PRK08117 421 DILDEALTEY 430 (433)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-16 Score=142.03 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=142.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+||+|. +...|.......+...- . ...+.++++.|
T Consensus 137 ~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~---~--p~~~~Div~~s 207 (392)
T PLN03227 137 DQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGL---K--PMVHAEIVTFS 207 (392)
T ss_pred CCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCC---C--CCCCceEEEee
Confidence 36788899989999999999 8899999999999999999997 43334432334443210 0 02355788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc---cccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM---SSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.+|..| |++++++ .+.+.+... ..++. .++..+.++...+.... . ..++.+.++++.+++.+.|+
T Consensus 208 lsk~~g~~g---g~v~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~--~--~~~~~~~l~~~~~~l~~~L~ 279 (392)
T PLN03227 208 LENAFGSVG---GMTVGSE-EVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL--A--GPQLLNRLHDSIANLYSTLT 279 (392)
T ss_pred chhhhhccC---cEEecCH-HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHH
Confidence 999987556 8888854 444444322 12221 22444444444443211 1 24566778888899999997
Q ss_pred hcCCce----------ecCCceEEEEEecCccccCCCh---hhHHHHHHHHHHhcCeEEeCCCC-----CCCCCCCeEEE
Q 044773 166 KAGISC----------LKSNAGLFCWVDMRHLLSSNTF---EAEMELWKKIVYDVKLNISPGSS-----CHCTEPGWFRV 227 (289)
Q Consensus 166 ~~g~~~----------~~~~~g~~~~i~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~-----f~~~~~~~~Ri 227 (289)
+.++.. .....|.++.+.+.+....... ....+++..++ ++|+.+.+... +...++..+|+
T Consensus 280 ~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gi~~~~~~~~~~~~~~~~P~~~iR~ 358 (392)
T PLN03227 280 NSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSL-SEGVAVVSTGGHVKKFLQLVPPPCLRV 358 (392)
T ss_pred hcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHH-HCCCEEEecccccCCcCCCCCCceEEE
Confidence 654321 1112244555666442111000 00125666665 66999875321 12234678999
Q ss_pred EEe-cCCHHHHHHHHHHHHHHHHHHHH
Q 044773 228 CFA-NMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 228 s~~-~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++. .+++||++++++.|++++++..+
T Consensus 359 ~~~~~~t~eei~~~~~~l~~~~~~~~~ 385 (392)
T PLN03227 359 VANASHTREDIDKLLTVLGEAVEAILC 385 (392)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 994 48999999999999999988753
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=143.68 Aligned_cols=217 Identities=17% Similarity=0.151 Sum_probs=142.3
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSR-NELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~-~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... +++.+|++..+++++|.+.+. +.+++|.++|++|++++|+||+|.+++++|..+ .. +...
T Consensus 176 le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~-~~~~-------- 245 (401)
T TIGR01885 176 LEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CV-DHEN-------- 245 (401)
T ss_pred HHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HH-hhcC--------
Confidence 45556443 356676766669999998864 479999999999999999999998776555421 11 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
. ..+ +.++||.++.+++|+|+++++ +.+.+.+... ...+..+++.+.++.++|+.. .+ ....++.++..
T Consensus 246 ~-~~d--i~~~gK~l~~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~ 316 (401)
T TIGR01885 246 V-KPD--IVLLGKALSGGVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKLG 316 (401)
T ss_pred C-CCC--EEEeeccccCCCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHH
Confidence 1 111 235789998555899999995 4555544331 222335778888777777543 21 12345666778
Q ss_pred HHHHHHHHhcCCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCC
Q 044773 158 RKLVSGLEKAGISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMS 233 (289)
Q Consensus 158 ~~l~~~l~~~g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~ 233 (289)
+++.+.|++++..+ ..+.|.++. +.+...... ....+++..|. ++||.+.|+. +..+||++. .++
T Consensus 317 ~~~~~~L~~l~~~~~~~~~g~g~~~~-i~~~~~~~~---~~~~~l~~~l~-~~Gv~v~~~~------~~~lRi~p~l~~t 385 (401)
T TIGR01885 317 EIFRDQLKKLPKPIITEVRGRGLLNA-IVIDESKTG---RTAWDLCLKLK-EKGLLAKPTH------GNIIRLAPPLVIT 385 (401)
T ss_pred HHHHHHHHhccCCceeEEeecCeeEE-EEeccCcch---hHHHHHHHHHH-hCCEEEEecC------CCEEEEeCCccCC
Confidence 88999998874332 234554444 444332110 12356777776 6699998742 468999984 379
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFV 248 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l 248 (289)
++++++++++|.+++
T Consensus 386 ~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 386 EEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=141.92 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=128.2
Q ss_pred hHHHhhhC----CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH----LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~----~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++.. +++.+|++++++|++|.+.+ +++|.++|+++|+++++|++|+...++ ...........
T Consensus 130 l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g-~~g~g~~~~~~------ 199 (370)
T PRK05937 130 LESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFG-DDGKGFCHSLG------ 199 (370)
T ss_pred HHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCchHHhhC------
Confidence 45555432 23557778999999999999 899999999999999999999843232 22111111100
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
..+.++.+.||||.+|..| +.+++.++...........+ ...+++...++..+++. +.+.....+++++
T Consensus 200 --~~~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~---l~~~~~~~~~~l~ 271 (370)
T PRK05937 200 --YENFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF---LSQEGELARKQLF 271 (370)
T ss_pred --CCCCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH---HHhCcHHHHHHHH
Confidence 1123467899999999667 44555443333333222222 12344544444344432 2222344556777
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+.++++.+.|...+ + + ....+.++.. +...+...| .++||.+... +. +..+.+|+++.. ++
T Consensus 272 ~l~~~l~~~l~~~~-----~-~-~~~~i~~~~~-------~~~~~~~~L-~~~gi~v~~~--~~-~~~~~iRis~~~~~t 333 (370)
T PRK05937 272 RLKEYFAQKFSSAA-----P-G-CVQPIFLPGI-------SEQELYSKL-VETGIRVGVV--CF-PTGPFLRVNLHAFNT 333 (370)
T ss_pred HHHHHHHHhcCCCC-----C-C-CEEEEEeCCh-------hHHHHHHHH-HHCCeeEEee--CC-CCCCEEEEEcCCCCC
Confidence 77777777765321 1 1 1111223321 113455555 5779988632 22 234689999964 79
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~ 253 (289)
++|++.+++.|++++++..+
T Consensus 334 ~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 334 EDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999887654
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=141.15 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=132.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+. |..+.+..++ +.+++++|
T Consensus 157 ~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~----g~~~~~~~~~------------g~D~~~~s 217 (387)
T PRK09331 157 KPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTV----GRMPVDGKKL------------GADFIVGS 217 (387)
T ss_pred CCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCccc----CCcCCCHHHc------------CCCEEEee
Confidence 57899999999999999887 99999999999999999999983 2222232222 45688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccC------CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG------LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
++|+++ .+.++||++++++.+.........+. ..+...+..+..++.....+.+..+ ..+...++.+++++.
T Consensus 218 ~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~-~~~~~~~~~~~l~~~ 295 (387)
T PRK09331 218 GHKSMA-ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVK-RWDEEVKKARWFVDE 295 (387)
T ss_pred Cccccc-CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999998 56689999996544433222211110 0111111112222222122133333 334456677889999
Q ss_pred HHhc-CCceec--CCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 164 LEKA-GISCLK--SNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 164 l~~~-g~~~~~--~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
|.++ |+++.. +....+..++.+.... ........++...|. ++||...+. .....+|+....+++++++
T Consensus 296 L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~~-----~~~~i~ri~~~g~t~~di~ 369 (387)
T PRK09331 296 LEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELK-KRGIHGIKP-----GATKEFKLSTYGLTWEQVE 369 (387)
T ss_pred HhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHH-HcCceEEcc-----CCceEEEEEeccCCHHHHH
Confidence 9998 888773 2223344455442100 000011234666665 669985432 1234577777336999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSI 251 (289)
Q Consensus 239 ~~l~~l~~~l~~~ 251 (289)
.+++.|++++++.
T Consensus 370 ~l~~aL~~i~~~~ 382 (387)
T PRK09331 370 YVADAFKEIAEKY 382 (387)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-16 Score=140.19 Aligned_cols=133 Identities=14% Similarity=0.230 Sum_probs=89.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++||+||||.+++ +++|.++|+++|+++|+|++|....+. ...++ +.++++.|
T Consensus 149 ~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~-----~~~~~------------gaDivv~S 208 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ-----KPLEL------------GAHIVVYS 208 (398)
T ss_pred cCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC-----Cchhh------------CCCEEEee
Confidence 57999999999999999999 899999999999999999999853221 11122 44688999
Q ss_pred CccccCCCCceEE-EEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G-~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.++.+|.++| +++++++.+.+.+....... .+.+.+..++.++....- +..+.++..++.+.+.+.|+++
T Consensus 209 ~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~-g~~~s~~~A~~~l~~L~t----l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 209 ATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT-GPSLSPFNAWTLLKGLET----LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred ccccccCCccceEEEEEeCcHHHHHHHHHHHHHh-CCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999988899996 55665555544333322111 223333444444443222 3444455567777788888776
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=140.86 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=130.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+ .. ++ ..+.++++.|
T Consensus 145 ~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~-~~---pl-------------~~g~Div~~S 204 (386)
T PRK06767 145 PNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYL-QR---PL-------------ELGCDAVVHS 204 (386)
T ss_pred cCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccccc-CC---ch-------------hcCCcEEEec
Confidence 57899999999999999999 88999999999999999999974322 11 11 1133578899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++.+|.++ ||++++++.+......... .+ ..+++.+.++...++. +..+.+..+++.+.+.+.|++
T Consensus 205 ~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t-------l~~r~~~~~~~a~~la~~L~~ 277 (386)
T PRK06767 205 ATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT-------LAVRMDRHCDNAEKIVSFLKN 277 (386)
T ss_pred CcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999998788885 8999976655554433322 22 2344443333333332 344556678888889999998
Q ss_pred c-CCce-ec-----------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------------
Q 044773 167 A-GISC-LK-----------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------------- 219 (289)
Q Consensus 167 ~-g~~~-~~-----------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------- 219 (289)
+ +++. .. ..+|++ .+++... ..+..++...| +..++.+.-|.....
T Consensus 278 ~p~v~~v~~p~~~~~~~~~~~~gg~v-sf~l~~~-----~~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~ 350 (386)
T PRK06767 278 HDAVEGVWYPEGELASRQMKRGGGVI-SFSIKGG-----KEETQAFINDL-HFITIAVSLGDTETLIQHPATMTHAAIPA 350 (386)
T ss_pred CCCccEEECCCcHHHHHhCCCCCceE-EEEEcCC-----HHHHHHHHHhC-CccEEecCCCCcCccccCCCccccccCCH
Confidence 8 6652 21 234443 3555421 12234555555 355555443332221
Q ss_pred -------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 220 -------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 -------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++.+|||++. |+.+.+++.|.++++
T Consensus 351 ~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 351 ELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred HHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 124689999996 677788888877775
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-16 Score=140.58 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=137.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.. .....+. ..+.++++.|
T Consensus 136 ~~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g----~~~~~~~------------~~~~D~~~~s 196 (376)
T TIGR01977 136 TNTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAG----VIPIDMT------------ELAIDMLAFT 196 (376)
T ss_pred CCCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccC----ccCCCch------------hcCCCEEEec
Confidence 46899999999999999999 788999999999999999999742 1112221 2355688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc------------------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM------------------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
++|.++.|. .+|.++.++.......... ...++.+.....++..+++... +.-.+..++
T Consensus 197 ~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~--~~g~~~~~~ 273 (376)
T TIGR01977 197 GHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIE--KIGIANIAK 273 (376)
T ss_pred ccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHH--HhCHHHHHH
Confidence 999986442 3677766444311111000 0012233444444444443211 122456677
Q ss_pred HHHHHHHHHHHHHHhc-CCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-------
Q 044773 152 RLKQRHRKLVSGLEKA-GISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------- 219 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~-g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------- 219 (289)
+.++..+++.+.|.+. |+++..+. .+..+++.++.. +..++...|.+++||.+.+|..+..
T Consensus 274 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g 346 (376)
T TIGR01977 274 KECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLHCAPLAHKTIG 346 (376)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence 7888888899999876 67665431 133555666432 1235777776566999999887642
Q ss_pred -CCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 220 -TEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 220 -~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
...+.+|+++.. ++++|++.++++|++
T Consensus 347 ~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 347 TFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 245799999954 899999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=135.96 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=127.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|... + +..+. ++ +.+++++|
T Consensus 131 ~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~-~-~~~p~---~~------------g~Divv~S 190 (366)
T PRK07582 131 AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP-L-GQRPL---EL------------GADLVVAS 190 (366)
T ss_pred cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc-c-ccCch---hc------------CCcEEEec
Confidence 57899999999999998877 999999999999999999999631 1 22111 12 23478899
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||+++ .+|+++||++++++.+.+.+.....+. ..++.....+...++. +..+.++..++...+.+.|++
T Consensus 191 ~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-------l~~R~~~~~~na~~la~~L~~ 263 (366)
T PRK07582 191 DTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-------LGLRFARQCANALAVAELLAG 263 (366)
T ss_pred ccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999994 568999999987666666555443332 2455665555555554 233335555777788888887
Q ss_pred c-CCc-ee------cC-----------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------
Q 044773 167 A-GIS-CL------KS-----------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------- 219 (289)
Q Consensus 167 ~-g~~-~~------~~-----------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------- 219 (289)
+ .+. +. .| -||+ +.+++.. . +.+...+++.++... +..+|.
T Consensus 264 ~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~-~s~~~~~---~-------~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~ 331 (366)
T PRK07582 264 HPAVRGVRYPGLPGDPAHEVAARQMRRFGGL-VSFELAD---A-------AAAERFVAASRLVVA-ATSFGGVHTSADRR 331 (366)
T ss_pred CCCccEEECCCCCCCccHHHHHhhCCCCcce-EEEEeCC---H-------HHHHHHHHhCCccee-cccCCCccchhhhH
Confidence 6 332 11 12 2443 3456642 1 233445556666554 333332
Q ss_pred ------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+++.||+|++. |+.+++++.|.++++.
T Consensus 332 ~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~ 365 (366)
T PRK07582 332 ARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDA 365 (366)
T ss_pred HHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 124689999996 5556666666666653
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=138.90 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=142.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.. .++.|+++..+|-++ ..+ +++|.++|+++|+++++|++|....+.+..... ...+ ..
T Consensus 212 l~~~~~~--~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~--~~~~--------~~ 275 (493)
T PRK13580 212 IAALARE--FKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTG--DEDP--------VP 275 (493)
T ss_pred HHHHHhh--cCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceeccccchh--hcCC--------CC
Confidence 3455543 466778888877644 667 999999999999999999999855443222110 0000 11
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+.+++++|++|++ |..| |+++++ +.+.+.+....++...+++...+++.++.-...+....++.++++.++.++|
T Consensus 276 ~~D~vtgT~hKaL~GP~G---G~I~~~-~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~L 351 (493)
T PRK13580 276 HADIVTTTTHKTLRGPRG---GLVLAK-KEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARAL 351 (493)
T ss_pred CCcEEEeCChhhccCCCe---EEEEec-HHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 4558899999999 5334 999995 4455555444444333332223222222211111122356788999999999
Q ss_pred HHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CC---CCeEEEEEec----
Q 044773 161 VSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TE---PGWFRVCFAN---- 231 (289)
Q Consensus 161 ~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~---~~~~Ris~~~---- 231 (289)
.+.|.+.|+.+... ..+..+++.+.+.... .+.+...+++.||.+.+-..... .+ +..+||++..
T Consensus 352 a~~L~~~G~~vv~ggTdshIV~V~lg~~~~~------g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttr 425 (493)
T PRK13580 352 AEGFLKRGARLVTGGTDNHLVLIDVTSFGLT------GRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTL 425 (493)
T ss_pred HHHHHhcCCCccCCCCCCCEEEEEeCCHHHH------HHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhc
Confidence 99999999987532 2345666777653211 23455556788999875543332 22 5689999843
Q ss_pred -CCHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++++.|.++++..
T Consensus 426 g~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 426 GMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 35899999999999988754
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-15 Score=136.06 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=137.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++.+ ++++|++++++|| ...+ +++|.++|+++|+++|+|++|... ...+.....+ .
T Consensus 157 l~~~i~~~-~~k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~-------------~ 217 (416)
T PRK00011 157 VEKLALEH-KPKLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPV-------------P 217 (416)
T ss_pred HHHHHHhc-CCCEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCC-------------C
Confidence 34555443 6889888766554 4445 899999999999999999998632 1112111111 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC-CCCh--HHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-LVSS--QTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~-~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..+++++|+||++ +|.|.||++++++.+.+.+......+ ..++ ..+.++..++.. .+.+.+.+..+++++++
T Consensus 218 -~~di~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~ 292 (416)
T PRK00011 218 -HADVVTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKE--ALEPEFKEYAQQVVKNA 292 (416)
T ss_pred -CCcEEEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence 2347899999987 56778999997666666655443222 1222 222222222221 11344677888899999
Q ss_pred HHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC-CC---CCCCCCeEEEEEe--
Q 044773 158 RKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS-SC---HCTEPGWFRVCFA-- 230 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~-~f---~~~~~~~~Ris~~-- 230 (289)
+++.+.|++.|+++.. ...++++|+.++... .+..++...| +++||.+..+. .+ .+..+..+|++..
T Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~ 366 (416)
T PRK00011 293 KALAEALAERGFRVVSGGTDNHLVLVDLRSKG-----LTGKEAEAAL-EEANITVNKNAVPFDPRSPFVTSGIRIGTPAI 366 (416)
T ss_pred HHHHHHHHhCCCeeeecCCCCeEEEEeCcccC-----CCHHHHHHHH-HHcCcEEccCcCCCCCCCCCCCCceEecCHHH
Confidence 9999999988887653 122478888885321 1113455544 57899997432 11 1122456899651
Q ss_pred ---cCCHHHHHHHHHHHHHHHHH
Q 044773 231 ---NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 231 ---~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+++++++.+++.|++++..
T Consensus 367 ~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 367 TTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred hhcCcCHHHHHHHHHHHHHHHhc
Confidence 24689999999999887664
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-15 Score=134.26 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=141.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++++||||.+.+ +++|.++|+++|+++++|++|.++............. ...
T Consensus 144 l~~~i~--~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~---------~~~ 209 (371)
T PRK13520 144 VEDLID--DNTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDF---------SLP 209 (371)
T ss_pred HHHHHh--hCCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccc---------cCC
Confidence 344444 34677788888999999998 9999999999999999999998653210000000011 012
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------CCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------LVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
+...+..|.+|. +.+|.++|++++.++.+.+.+.....+. +.+.....++..+++... ....++..+
T Consensus 210 ~vd~~~~s~~K~-~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~--~~g~~~~~~ 286 (371)
T PRK13520 210 GVDSITIDPHKM-GLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG--REGYRKVVE 286 (371)
T ss_pred CCceEEECCccc-cCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhc--HhHHHHHHH
Confidence 344566788885 4477899999886665555443222111 112234444555554321 333577788
Q ss_pred HHHHHHHHHHHHHHhcCCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 152 RLKQRHRKLVSGLEKAGIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+..++++++.+.|.+.|++ +..+..+ ++.++++. . .++...|. ++||.+.++. ....+|+++.
T Consensus 287 ~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---~------~~v~~~L~-~~gi~v~~~~-----~~~~iRis~~ 350 (371)
T PRK13520 287 RCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDPN---P------DEVREKLR-ERGWRVSVTR-----CPEALRIVCM 350 (371)
T ss_pred HHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecCC---H------HHHHHHHH-HCCceeccCC-----CCCEEEEEEE
Confidence 8899999999999988887 5555555 44455541 1 34666666 5599988653 2457999985
Q ss_pred c-CCHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~ 249 (289)
. +++++++.+++.|+++++
T Consensus 351 ~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 351 PHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 4 689999999999988654
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=140.52 Aligned_cols=209 Identities=14% Similarity=0.123 Sum_probs=129.6
Q ss_pred ccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEEe
Q 044773 12 VKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 12 ~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+.+ ++..| ..-.|. +++++.+++|.++|++||+++|+||+|.+++.+|..+.. ...+ ..+ +.
T Consensus 199 ~aa-vi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v----------~PD----i~ 263 (425)
T PRK09264 199 PAA-VIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI----------TPD----IV 263 (425)
T ss_pred eEE-EEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC----------CCC----EE
Confidence 445 44556 665676 678999999999999999999999999987666543211 1111 112 55
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++||.+|..|+++|+++++++ +. .+.. ....+..|++...+..+.+... + .+ ....++++++.+++.+.|++
T Consensus 264 t~~K~l~~~G~pigav~~~~~-i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~-~-~~--~~l~~~~~~~g~~l~~~l~~ 337 (425)
T PRK09264 264 TLSKSISGYGLPMALVLIKPE-LD-VWKPGEHNGTFRGNNLAFVTATAALEEY-W-SD--DAFEKEVKAKGELVRERLEE 337 (425)
T ss_pred EeccccCCCccceEEEEEchh-hh-ccCCCccCCCCCCCHHHHHHHHHHHHHH-H-hh--hHHHHHHHHHHHHHHHHHHH
Confidence 789999944999999999754 33 2221 1122336666665554555211 0 00 12333344444444444433
Q ss_pred ----cC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHH
Q 044773 167 ----AG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLS 240 (289)
Q Consensus 167 ----~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~ 240 (289)
.+ +.......|+++++.+.... ....+...++ +.||.+.++..+ ...+|+++. .+++++++++
T Consensus 338 l~~~~~~~~~~vrg~Gl~~~i~l~~~~------~~~~l~~~~~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~ei~~~ 406 (425)
T PRK09264 338 IAAKYPGLGAEVRGRGMMQGIDFGDGE------LAGKIAAEAF-ENGLIIETSGPE----DEVVKLLPPLTIDEEELEEG 406 (425)
T ss_pred HHHhCCCceecceecccEEEEEecChH------HHHHHHHHHH-HCCCEEeccCCC----CCEEEEeCCCCCCHHHHHHH
Confidence 22 21223345778888886421 1235666665 669999875433 257888875 3699999999
Q ss_pred HHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSIT 252 (289)
Q Consensus 241 l~~l~~~l~~~~ 252 (289)
+++|.+++++..
T Consensus 407 ~~~l~~~l~~~~ 418 (425)
T PRK09264 407 LDILEEAVAEVL 418 (425)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=138.42 Aligned_cols=213 Identities=12% Similarity=0.114 Sum_probs=135.8
Q ss_pred CccEEEEeCCCCCC-ccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPL-GTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPt-G~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..|-+.. |.. .+.+.+++|.++|++||+++|.||++.+++++|..+.. +.. +...-+.
T Consensus 219 ~iAa-vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~--~~~-----------gv~PDiv 284 (443)
T PRK06058 219 NLAA-VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFAC--EHE-----------GIVPDLI 284 (443)
T ss_pred ceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHH--Hhc-----------CCCCCEE
Confidence 5555 556774444 544 46889999999999999999999999988666654311 221 1112244
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| +|+++|++++++ .+.+.+... ...+..|++.+.++.+.|+... + ....++++++.+++.+.|++
T Consensus 285 ~~gK~l~-~G~Pi~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~---~--~~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 285 TTAKGIA-GGLPLSAVTGRA-EIMDAPHPGGLGGTYGGNPVACAAALAAIETIE---E--DDLVARARQIEALMTDRLRA 357 (443)
T ss_pred EEccccc-CCCccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHH
Confidence 6689999 899999999954 455544322 2234478899888888876422 1 13344555555666666655
Q ss_pred c----CCc-eecCCceEEEEEecCcc-ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHH
Q 044773 167 A----GIS-CLKSNAGLFCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKL 239 (289)
Q Consensus 167 ~----g~~-~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~ 239 (289)
+ ++. -..+.|.+ ..+.+... .......-...+...++ ++||.+.|+..++ .++|+.++. ++++++++
T Consensus 358 l~~~~~~i~~vrg~G~~-~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~~----~~lr~~Ppl~~t~~~i~~ 431 (443)
T PRK06058 358 LAAEDDRIGDVRGRGAM-IAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTYG----NVIRLLPPLVIGDELLRE 431 (443)
T ss_pred HHhhCCcEEeeeccceE-EEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCCC----CEEEEECCCccCHHHHHH
Confidence 3 221 13455544 44555321 11111111234555555 6799999876554 489998754 79999999
Q ss_pred HHHHHHHHHHH
Q 044773 240 SMQRLKAFVDS 250 (289)
Q Consensus 240 ~l~~l~~~l~~ 250 (289)
+++++.+++++
T Consensus 432 ~~~~l~~~l~~ 442 (443)
T PRK06058 432 GLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=136.83 Aligned_cols=202 Identities=18% Similarity=0.235 Sum_probs=133.3
Q ss_pred CccEE-EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i-~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
....| ++++||||-|.+ .+.++ +..+..+|.|-||....|+.-.. ..+.++.+.|
T Consensus 136 ~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI~~----------------~aD~DiMLFT 191 (363)
T PF04864_consen 136 PSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPITA----------------PADHDIMLFT 191 (363)
T ss_dssp CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS---S-----------------B--SEEEEE
T ss_pred CCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccccCC----------------CCCCceEEEE
Confidence 34566 999999999997 55554 45567789999998544432221 3367799999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchH---HH----HHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKF---AQ----NYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~---~~----~~~~~~~~~~~~~~~~l 160 (289)
+||.-|..|.|+||.+++++.+.+.+..+... ..++.=.|.-++.+|+..-. .. +...--++.+++|.+.|
T Consensus 192 ~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L 271 (363)
T PF04864_consen 192 LSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKL 271 (363)
T ss_dssp HHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred EecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877665433 23677788877777763210 01 34666778899999999
Q ss_pred HHHHHhcC-Cc--------------eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 161 VSGLEKAG-IS--------------CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 161 ~~~l~~~g-~~--------------~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
.+.+..-+ +. +..| +.-|.|+++....+. -|...+++.||..+.|..||. ++.++
T Consensus 272 ~~~~~~S~rFSLq~~~~~yC~ff~~~~~p-sPafAWlkCe~eed~--------DC~~~l~~~~I~tr~G~~fga-~~ryV 341 (363)
T PF04864_consen 272 RAAVSASKRFSLQKFSPQYCNFFKRVREP-SPAFAWLKCEREEDE--------DCYAVLREAKIITRSGVLFGA-DSRYV 341 (363)
T ss_dssp HHHHCCSSSEEE---SCEEETTTTCEEE----SEEEEEESSCGGS--------SHHHHHHCTTEEEEEGGGGTS--TTEE
T ss_pred HHHHHhcCceecCcCCchhccccccccCC-CCCeEEEecCCcccc--------cHHHHHHhCCcccCCCCccCC-CCCeE
Confidence 99997642 11 1222 235899999865332 466677799999999999995 67899
Q ss_pred EEEEecCCHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|||+-. ++++++.++++|..+
T Consensus 342 RlSml~-~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 342 RLSMLK-RDDDFDQLLERLSKL 362 (363)
T ss_dssp EEESSS--HHHHHHHHHHHHCC
T ss_pred EEeccC-CHHHHHHHHHHHHhh
Confidence 999985 899999999999753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=135.30 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=93.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|....+ . ... ..+.++++.|
T Consensus 124 ~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~-~----~~~------------~~g~Divv~S 183 (369)
T cd00614 124 PETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYL-Q----RPL------------ELGADIVVHS 183 (369)
T ss_pred CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhc-C----Chh------------hhCCcEEEec
Confidence 46899999999999999998 89999999999999999999975322 1 111 1245688999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.+|.+| .+.||++++++.+.+.+..... ++ ..++....++...++. +..+.+...++.+.+.+.|++
T Consensus 184 ~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~~r~~~~~~na~~la~~L~~ 256 (369)
T cd00614 184 ATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT-------LPLRMERHSENALKVAEFLEK 256 (369)
T ss_pred cceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999997565 8899999977455555544332 22 2444444444333432 344556677788889999988
Q ss_pred cC
Q 044773 167 AG 168 (289)
Q Consensus 167 ~g 168 (289)
++
T Consensus 257 ~~ 258 (369)
T cd00614 257 HP 258 (369)
T ss_pred CC
Confidence 73
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=134.31 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|..... .. + ..+ +.++++.|
T Consensus 145 ~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~-~~---p-l~~------------g~Divv~S 204 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPAL-QQ---P-LKL------------GADVVIHS 204 (390)
T ss_pred cCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCccccc-CC---c-hhh------------CCcEEEee
Confidence 57899999999999999998 89999999999999999999964322 11 1 111 33578999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||+++.+|.++ ||++++++.+..........+ ..+.+..+..++... +.+..+.+...++.+.+.+.|+++
T Consensus 205 ~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g--~~~~~~~a~~~l~gl----~tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 205 ATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAG--PTLSPFNAWVFLKGL----ETLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred cceeecCCcceEeEEEEcCHHHHHHHHHHHHHhC--CCCCHHHHHHHHccc----chHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998789888 556665444333332222222 222233333333332 234555566667888889999876
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=132.09 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=97.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... ..++ ++ +.++++.|
T Consensus 136 ~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~----~~pl-~~------------gaDivv~S 195 (386)
T PRK08045 136 EKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL----QNPL-AL------------GADLVLHS 195 (386)
T ss_pred cCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----CCch-hh------------CCCEEEee
Confidence 47899999999999999999 88889999999999999999975322 1111 12 23488999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|+++ .+++..|+++++++.+.+.+...... ...+++.+..+...++. +..+.++..++...+.+.|++
T Consensus 196 ~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~R~~~~~~na~~la~~L~~ 268 (386)
T PRK08045 196 CTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAIVKYLQT 268 (386)
T ss_pred cceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999995 56788999988666665544433222 23667777777777775 456667777888888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 269 ~ 269 (386)
T PRK08045 269 Q 269 (386)
T ss_pred C
Confidence 7
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-15 Score=134.17 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=150.2
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++|+|.+++.+|.||.+.+ +++|+++|+++|+++++|-+++. ++.+.++.++ +.++++
T Consensus 159 i~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l------------~~Df~a 219 (405)
T COG0520 159 ITPKTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA----GHLPIDVQEL------------GCDFLA 219 (405)
T ss_pred cCCCceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc----CccCCCchhc------------CCCEEE
Confidence 4468999999999999999999 99999999999999999999984 4555565544 777999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH------------h--------ccc---cCCCChHHHHHHHHHhCCchHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT------------K--------MSS---FGLVSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~------------~--------~~~---~~~~~~~~q~~~~~~l~~~~~~~~ 144 (289)
.|.+|.++.| ..+|.+.++++.+.+... . ... .++++......+.++++-. .+
T Consensus 220 fsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~---~~ 295 (405)
T COG0520 220 FSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYL---LE 295 (405)
T ss_pred EcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHH---HH
Confidence 9999955325 349999997666554311 0 000 0112223333444444432 22
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 145 Y-ISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 145 ~-~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
. +++..++.++..+++.+.|.++ +++++.+. .+-.+.+.+.... ..+++..|. ++||.++.|..|..
T Consensus 296 ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~-------~~dv~~~L~-~~gI~vr~g~~ca~ 367 (405)
T COG0520 296 IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH-------PHDVATLLD-EKGIAVRAGHHCAQ 367 (405)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC-------HHHHHHHHH-hCCeEEEecccccc
Confidence 2 5778889999999999999988 78888764 2334445555431 235666665 66899999988864
Q ss_pred C------CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 220 T------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 ~------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
. ....+|+|++. ++.+|++.+++.|+++.+
T Consensus 368 p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 368 PLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 2 13459999975 899999999999998764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=139.33 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=129.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++|+||||.+.+ +++|.++|+++|+++++|++|....+........ .. ...+.+.+..|+
T Consensus 148 ~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~-------~~~~~d~~~~s~ 214 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL---DF-------GIERVDSISVDP 214 (345)
T ss_pred CcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH---hc-------CccccCEEEEch
Confidence 5788899999999999866 9999999999999999999998654322111111 00 012345677899
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GI 169 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 169 (289)
+|.++ ++.++|+++++ .+.+.++..++.. ..+++..++..++++++.+.|.+. ++
T Consensus 215 ~K~l~-~p~g~g~~~~~------------------~~~~~~~l~~l~~-----~g~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (345)
T cd06450 215 HKYGL-VPLGCSAVLVR------------------ALKLWATLRRFGR-----DGYGEHIDRIVDLAKYLAELIRADPGF 270 (345)
T ss_pred hHhhC-CCcchHHHHHH------------------HHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 99876 66788888774 3334444444433 235677788888999999999887 67
Q ss_pred ceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C-CHHHHHHHHHHHHH
Q 044773 170 SCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M-SEDTLKLSMQRLKA 246 (289)
Q Consensus 170 ~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~-~~e~l~~~l~~l~~ 246 (289)
++.. ++++++. +.++..... . .+..++.+.|. ++|+.+.++..+. .+.++|+++.. + +.++++.+++.|++
T Consensus 271 ~~~~~~~~~iv~-f~~~~~~~~-~-~~~~~i~~~L~-~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 271 ELLGEPNLSLVC-FRLKPSVKL-D-ELNYDLSDRLN-ERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEecCCceeEEE-EEECCcchh-h-HHHHHHHHHHH-hcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 6554 5566555 444431000 0 22245777776 5555555444332 45789999964 3 89999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-15 Score=135.81 Aligned_cols=203 Identities=13% Similarity=0.189 Sum_probs=122.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|....+. . . .+. +.++++
T Consensus 148 ~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~-~---~-l~~------------g~Divv 207 (400)
T PRK06234 148 ANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ-R---P-LQL------------GADVVV 207 (400)
T ss_pred cCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC-C---c-hhh------------CCcEEE
Confidence 57899999999999999998 89999999997 9999999999854331 1 1 111 455899
Q ss_pred ecCccccCCCCceE-EEEEecCHHHHHHHHhc--ccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRV-GAIYSNDDTVVAAATKM--SSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 88 ~s~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~--~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
.|+||.++.+|.++ ||++++++ +.+.++.. ... ...++.....+...++. +..+.++..++.+++.+
T Consensus 208 ~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-------l~~r~~~~~~na~~~a~ 279 (400)
T PRK06234 208 HSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-------LQIRMEKHCKNAMKVAK 279 (400)
T ss_pred eeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHH
Confidence 99999998788765 99999654 44444321 111 22344444444444433 23334445567777777
Q ss_pred HHHhcC-Cc-eec-----------------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----
Q 044773 163 GLEKAG-IS-CLK-----------------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---- 219 (289)
Q Consensus 163 ~l~~~g-~~-~~~-----------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---- 219 (289)
.|+++. +. +.- ..|++ +.+++.... ....++...| +-.++.+.-|.....
T Consensus 280 ~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l-~s~~l~~~~-----~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p 352 (400)
T PRK06234 280 FLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAM-ISFELKGGV-----EEGKVVMNNV-KLATLAVSLGDAETLIQHP 352 (400)
T ss_pred HHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCce-EEEEecCcH-----HHHHHHHHhC-CcceEeccCCCCCceecCC
Confidence 887652 11 111 12343 446665311 1123344443 233333322222210
Q ss_pred -----------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 -----------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 -----------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.+|||++. |+.+.+++.|+++++.
T Consensus 353 ~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 397 (400)
T PRK06234 353 ASMTHSPYTAEERKEAGISDGLVRLSVGL---EDVDDIIADLKQALDL 397 (400)
T ss_pred ccCCCCCCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 124689999997 6777777777777764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-15 Score=131.24 Aligned_cols=216 Identities=18% Similarity=0.235 Sum_probs=150.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++.++.. ++-+|++..-+--.|... +.+.++.+.++|.++|+++|.||++.+++.+|..+.. +.
T Consensus 177 l~~ai~~--~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~-------------e~ 241 (404)
T COG4992 177 LEAAIDE--DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAY-------------EH 241 (404)
T ss_pred HHHHhcc--CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHH-------------HH
Confidence 4555554 677766664488788776 5568999999999999999999999999888775422 12
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+....|.+++|.+| .|+++|.++++ +.....+. +.++|+ .|++...+..+.++-... .+..+..+++.
T Consensus 242 ~gV~PDI~tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfG-GNpLacAv~~a~l~~l~~-----e~ll~~v~~~g 313 (404)
T COG4992 242 YGVEPDILTLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFG-GNPLACAVALAVLEVLLE-----EGLLENVREKG 313 (404)
T ss_pred hCCCCCEEEeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCC-cCHHHHHHHHHHHHHHcc-----hhHHHHHHHHH
Confidence 244455788999999 88999999996 55454443 334444 899999888777764322 23334455555
Q ss_pred HHHHHHHHhc--CCc-ee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C
Q 044773 158 RKLVSGLEKA--GIS-CL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M 232 (289)
Q Consensus 158 ~~l~~~l~~~--g~~-~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~ 232 (289)
++|.+.|+++ .+. +. ...-|+++-+.+...... .++...+. +.|+.+.+.. +..+|+.++. +
T Consensus 314 ~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a------~~~~~~~~-~~gvL~~~a~------~~ViR~~PpL~i 380 (404)
T COG4992 314 EYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRA------RDIVRALR-EEGVLVLPAG------PNVIRFLPPLVI 380 (404)
T ss_pred HHHHHHHHHHhhcCCceeeeecceeEEEEEecCcccH------HHHHHHHH-HCCeEEecCC------CCeEEecCCccC
Confidence 6666666654 221 12 222367777887765312 34666665 7799998743 4589999965 7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++++++++++.++++....
T Consensus 381 ~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 381 TEEEIDEALDALERALAAASA 401 (404)
T ss_pred CHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999987653
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=136.42 Aligned_cols=202 Identities=14% Similarity=0.110 Sum_probs=129.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+ |+|.+. +.+++|.++|+++|+++|+|++|.... ..... +..+.+++++|
T Consensus 158 ~~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~----~~~~~------------~~~~~d~~~~s 218 (398)
T cd00613 158 EEVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT----GLKPP------------GEYGADIVVGN 218 (398)
T ss_pred CCeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc----CCCCh------------HHcCCCEEEee
Confidence 578999999985 899984 356999999999999999999886421 11111 12256799999
Q ss_pred CccccCCC----CceEEEEEecCHHHHHHHHh------------------------------ccc-cCCCChHH-HHHHH
Q 044773 90 LSKDLGLP----GFRVGAIYSNDDTVVAAATK------------------------------MSS-FGLVSSQT-QYLLS 133 (289)
Q Consensus 90 ~sK~~g~~----G~r~G~i~~~~~~~~~~~~~------------------------------~~~-~~~~~~~~-q~~~~ 133 (289)
++|.+ .| |.+.||++.+++. .+.+.. ... ....++.. +.+.+
T Consensus 219 ~~K~~-~p~g~Ggp~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~ 296 (398)
T cd00613 219 LQKTG-VPHGGGGPGAGFFAVKKEL-VRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAM 296 (398)
T ss_pred ccccC-CCCCCCCCceeEEEEhhhh-HhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHH
Confidence 99998 45 7899999996543 332210 000 01112222 22222
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEE
Q 044773 134 ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
.+.... ....++.+++++++.+++.+.|++++... .+.+.++ ++++++... . .+..+++..|+ ++||.+
T Consensus 297 ~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~-~---~~~~~~~~~L~-~~gi~~ 367 (398)
T cd00613 297 YIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY-G---IRAEDLAKALI-DGGFHA 367 (398)
T ss_pred HHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc-h---HHHHHHHHhhh-hcCccc
Confidence 222211 34467788899999999999999875433 2333333 456655310 0 12356777776 568876
Q ss_pred eCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
.... +...+.+|+++.. ++++|++++++.|
T Consensus 368 ~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 368 PTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 4322 2245789999954 7999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=135.15 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=132.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+ .. + ... +-++++.|
T Consensus 135 ~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~-~~---p-l~~------------gaDivv~S 194 (364)
T PRK07269 135 EDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY-QR---P-IEL------------GADIVLHS 194 (364)
T ss_pred cCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CC---c-hhh------------CCcEEEec
Confidence 57999999999999999887 99999999999999999999864322 11 1 112 34488999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+| .=.|+++++++.+.+.+...... + ..++.....+...|+. +..+.++..++.+.+.+.|++
T Consensus 195 ~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-------L~~r~~~~~~na~~~a~~L~~ 267 (364)
T PRK07269 195 ATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-------LSLRMERSTANAQEVVAFLKK 267 (364)
T ss_pred CceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999997433 34588888777666655433322 1 2455555544444543 345555567777778888887
Q ss_pred c-CC-ce-ecCCceEEEEEecCccccCCChhhH---HHHHHHHHHhcCeEEeCCCCCCC-----------CCCCeEEEEE
Q 044773 167 A-GI-SC-LKSNAGLFCWVDMRHLLSSNTFEAE---MELWKKIVYDVKLNISPGSSCHC-----------TEPGWFRVCF 229 (289)
Q Consensus 167 ~-g~-~~-~~~~~g~~~~i~~~~~~~~~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~-----------~~~~~~Ris~ 229 (289)
+ .+ ++ +++.||++.+. +........+.+. ..++..|.....+.+.|+..+.. ..++.+|||+
T Consensus 268 ~p~v~~v~ypg~gg~~sf~-~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsv 346 (364)
T PRK07269 268 SPAVKEVLYTGKGGMISFK-VADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSI 346 (364)
T ss_pred CCCccEEeCCCcCcEEEEE-ECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 6 33 34 36777766644 3321100001111 11334444455667777654422 1257899999
Q ss_pred ecCCHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~ 249 (289)
+. |+.+.+++.|.++++
T Consensus 347 Gl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 347 GI---EDARDLIADLKQALE 363 (364)
T ss_pred cc---CCHHHHHHHHHHHhc
Confidence 96 677777777777663
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=135.21 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=138.5
Q ss_pred HHHhhh-CCCccEEEEeCC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKR-HLKVKGVLVTNP-SNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p-~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++.. +++..+.++..| ++++|.+.+ .+.+++|.++|+++|+++|+||+|.+++..|..+. .+..
T Consensus 211 ~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a--~~~~--------- 279 (460)
T PRK06541 211 EEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFG--CERF--------- 279 (460)
T ss_pred HHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhh--hhhc---------
Confidence 444443 234455677778 899998765 88999999999999999999999988755554321 1111
Q ss_pred CCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHhcc-----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.++||.+| +|+ ++|+++++++.......... ..+..|++...++.+.++... + ....+++
T Consensus 280 --gv~PDivt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~---~--~~~~~~~ 351 (460)
T PRK06541 280 --GYVPDIITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFE---R--EGLLDHV 351 (460)
T ss_pred --CCCCCEEEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHH
Confidence 11111346999998 886 99999996554433322111 122256666555555554321 1 1345667
Q ss_pred HHHHHHHHHHHHhc-CCce---ecCCceEEEEEecCcccc-CCCh----hh---HHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 154 KQRHRKLVSGLEKA-GISC---LKSNAGLFCWVDMRHLLS-SNTF----EA---EMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~---~~~~~g~~~~i~~~~~~~-~~~~----~~---~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+++.++|.+.|+++ ...+ ....| .+..+.+..... ...+ .+ ...+...++ ++||.+.+.. .+
T Consensus 352 ~~~g~~l~~~L~~l~~~~~v~~vrg~G-l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~g 425 (460)
T PRK06541 352 RDNEPAFRATLEKLLDLPIVGDVRGDG-YFYGIELVKDKATKETFTDDESERLLRGFLSPALF-EAGLYCRADD----RG 425 (460)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH-hCCeEEEecC----CC
Confidence 77777777777765 2221 23444 455566643211 0000 00 013455565 6799998731 12
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
...+||+++. +++++++++++++.+++++.
T Consensus 426 ~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 426 DPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3679999964 79999999999999998764
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=131.18 Aligned_cols=130 Identities=10% Similarity=0.158 Sum_probs=87.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... .. +. .+ +..+++.|
T Consensus 148 ~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~-~~---~l-~~------------~~Divv~S 207 (398)
T PRK08249 148 KGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPIN-QN---PL-AL------------GADLVIHS 207 (398)
T ss_pred CCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCcccc-CC---ch-hh------------CCCEEecc
Confidence 46899999999999999999 88899999999999999999985422 11 11 11 33477899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||++|.+|.++ |++++ ++.+.+.+....... ..++..+..+.+-++. +..+.++..++.+.+.+.|++
T Consensus 208 ~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------L~~R~~~~~~na~~la~~L~~ 279 (398)
T PRK08249 208 ATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKT-------LKLRVRQQQESAMALAKYLQT 279 (398)
T ss_pred CceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-------HHHHHHHHHHHHHHHHHHHHc
Confidence 999998667776 55555 555555554433322 2333444433333332 344445566777888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 280 ~ 280 (398)
T PRK08249 280 H 280 (398)
T ss_pred C
Confidence 6
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=132.43 Aligned_cols=131 Identities=16% Similarity=0.301 Sum_probs=91.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++++++|+|++|....+. . ++ .+ +.++++.|
T Consensus 154 ~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~-~---~~-~~------------gaDivv~S 213 (403)
T PRK07810 154 VPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQ-R---GL-PL------------GADVVVYS 213 (403)
T ss_pred cCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccC-C---hh-hc------------CCcEEEcc
Confidence 46899999999999999998 999999999999999999999753221 1 11 11 34688999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhc-cccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKM-SSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~-~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++..|.++ |+++++++.+...+..+ ...+ ..++..+..+.+.++. +..+.++..++...+.+.|++
T Consensus 214 ~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~R~~~~~~~a~~~a~~L~~ 286 (403)
T PRK07810 214 GTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-------LALRVRHSNASALRIAEFLEG 286 (403)
T ss_pred CCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHhc
Confidence 999998778887 88888766554434332 2222 3555666655555554 344445556666667777777
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 287 ~ 287 (403)
T PRK07810 287 H 287 (403)
T ss_pred C
Confidence 6
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=131.12 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=92.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|...... .++ .+ +.+++++|
T Consensus 135 ~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~pl-~~------------gaDivv~S 194 (382)
T TIGR02080 135 QKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ----NPL-AL------------GADLVLHS 194 (382)
T ss_pred cCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hh------------CCCEEEee
Confidence 46899999999999999999 788999999999999999999753221 111 11 22488899
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++ .++++.|+++++++.+.+.+.....+ + ..+++....+..-++ .+..+.++..++...+.+.|++
T Consensus 195 ~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-------tl~~R~~~~~~na~~~a~~L~~ 267 (382)
T TIGR02080 195 CTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR-------TLVARMRLQQRNAQAIVEYLQT 267 (382)
T ss_pred cceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 999995 56789999988777666655544333 2 244555444433332 2344455666788888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 268 ~ 268 (382)
T TIGR02080 268 Q 268 (382)
T ss_pred C
Confidence 6
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-14 Score=129.66 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=129.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC--C--CCccChhhhhhccccccCCCCCceEE
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS--S--PGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~--~--~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++..++++.|+||||.+.+ +++|.++|+++++++++|++|..+... . .....+ .+ .......+
T Consensus 153 ~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~-d~---------~~~~~d~~ 219 (373)
T TIGR03812 153 NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPF-DF---------SLPGVQSI 219 (373)
T ss_pred CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCc-cc---------cCCCCCEE
Confidence 3445555568999999988 889999999999999999999754221 0 000000 00 01122345
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
..|.+| +++++.++|+++..++.+.+.+.....+. +.+.....++..+++... ...+++..+++.++
T Consensus 220 ~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~--~~g~~~~~~~~~~~ 296 (373)
T TIGR03812 220 TIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLG--REGYRKIVAECMEN 296 (373)
T ss_pred EECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence 567889 65577888877754555554443222221 122234444444444321 34457778889999
Q ss_pred HHHHHHHHHhcCCc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCH
Q 044773 157 HRKLVSGLEKAGIS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~ 234 (289)
++++.+.|+++|+. +.++..+ ++.+.++. . .++...|. ++||.+.++. .++++|+++.. +++
T Consensus 297 ~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---~------~~v~~~L~-~~gi~v~~~~-----~~~~iRis~~~~~t~ 360 (373)
T TIGR03812 297 TRYLVEELKKIGFEPVIEPVLN-IVAFEVDD---P------EEVRKKLR-DRGWYVSVTR-----CPKALRIVVMPHVTR 360 (373)
T ss_pred HHHHHHHHHhCCCeEEcCCCce-EEEEEeCC---H------HHHHHHHH-HCCceeccCC-----CCCEEEEEEECCCCH
Confidence 99999999998765 3444443 44455542 1 24666665 5699987653 24689999964 699
Q ss_pred HHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKA 246 (289)
Q Consensus 235 e~l~~~l~~l~~ 246 (289)
++++.+++.|++
T Consensus 361 edid~l~~~L~~ 372 (373)
T TIGR03812 361 EHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-14 Score=129.88 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=94.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|.... ...++ ++ +.++++.|
T Consensus 144 ~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~----~~~pl-~~------------gaDivv~S 203 (405)
T PRK08776 144 QSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPA----LQKPL-EF------------GADLVLHS 203 (405)
T ss_pred cCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccc----cCCcc-cc------------cCCEEEec
Confidence 47899999999999999977 9999999999999999999997421 11121 12 23488999
Q ss_pred CccccCCC-CceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLP-GFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+ ++..|+++++++.+.+.+...... ...+++...++...+ +++..+.++..++...+.+.|++
T Consensus 204 ~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-------~tl~~r~~~~~~na~~la~~L~~ 276 (405)
T PRK08776 204 TTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL-------RTLDARLRVHQENADAIAALLDG 276 (405)
T ss_pred CceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHHHc
Confidence 99999744 578999998777666555433222 124555555554333 34566777788888888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 277 ~ 277 (405)
T PRK08776 277 H 277 (405)
T ss_pred C
Confidence 6
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=133.94 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=137.2
Q ss_pred CccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.++++...+ |+....++++.+++|.++|++||+++|.||++.+++++|..+ ..... +....+.+
T Consensus 206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~------------gv~PDiv~ 272 (442)
T TIGR00709 206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-AFEHA------------GIEPDFVV 272 (442)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-HHHHc------------CCCCcEEE
Confidence 45665555444 554556899999999999999999999999999987766432 22111 11122344
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHH-hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
+||.+| .|+++|+++++++ +..... .....+..|++.+.++.+.|+... + ....++++++.+++.+.|+++
T Consensus 273 ~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~ 345 (442)
T TIGR00709 273 MSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWK--D---DNLAQNAQERGERITSFLDDMI 345 (442)
T ss_pred Eccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHH
Confidence 899998 6899999999655 422211 112334478888888888875421 1 123345555555566666543
Q ss_pred ---CCceecCCceEEEEEecCccccC------C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHH
Q 044773 168 ---GISCLKSNAGLFCWVDMRHLLSS------N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSED 235 (289)
Q Consensus 168 ---g~~~~~~~~g~~~~i~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e 235 (289)
++......-|.+..+.+.+.... . ...-...+...++ ++||.+.+.... .+.+|+.++. ++++
T Consensus 346 ~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~----~~~l~~~Ppl~it~~ 420 (442)
T TIGR00709 346 KEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF-ENGLLLETGGRE----GEVFRLLCPITIDQE 420 (442)
T ss_pred HhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHH-HCCeEEeecCCC----CCEEEEECCCCCCHH
Confidence 32222222355666776432110 0 0011234555555 679998764322 3579999964 7999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044773 236 TLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~~~~ 254 (289)
+++++++++.+++++...+
T Consensus 421 ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 421 ECEEGISRFKQAVEEALAE 439 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876544
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=134.43 Aligned_cols=224 Identities=16% Similarity=0.114 Sum_probs=135.4
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++.+..+ .++.+|++.....-+|.+.+ .+++++|.++|++|++++|+||+|.++ ..+... ..+...
T Consensus 187 l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~--~~~~~~-------- 255 (426)
T PRK00062 187 VEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGG--AQGYYG-------- 255 (426)
T ss_pred HHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCcc--HHHHhC--------
Confidence 34445433 24555555533445788876 889999999999999999999999977 333321 122211
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc---c--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM---S--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
...-+.++||.++ +|+++|+++++ +.+.+.+... . +.+..+++.+.++.+.|+...- ++..+..++...
T Consensus 256 ---~~pDi~~~gK~l~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~ 329 (426)
T PRK00062 256 ---VTPDLTTLGKIIG-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTK 329 (426)
T ss_pred ---CCcchHhhhhHhh-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 1112578999998 89999999885 4555555311 1 2233677888777777664321 223444444444
Q ss_pred HHHHHHHHHHHhcCCcee-cCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 155 QRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
..++.|.+.+.++++... .+.|.++ .+.+...... ........+...++ ++||.+.|.. + +.++
T Consensus 330 ~~~~~l~~~~~~~~~~~~vrg~G~~~-~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~-~-----~~~~ 401 (426)
T PRK00062 330 RLAEGLKEAAKKAGIPLTVNRVGSMF-GLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ-F-----EAGF 401 (426)
T ss_pred HHHHHHHHHHHHcCCceEEEEecceE-EEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC-c-----Ccee
Confidence 444555555555565543 3445444 3444321100 00011234666666 6799998742 1 2467
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++. +++++++++++++.+++.+.
T Consensus 402 ~~~~-~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 402 VSAA-HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred eecc-CCHHHHHHHHHHHHHHHHhh
Confidence 7754 69999999999999988653
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=129.95 Aligned_cols=216 Identities=15% Similarity=0.126 Sum_probs=145.5
Q ss_pred CccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++-++++..-+.-.|... |.+.++++.++|+++|+++|+||++.+++.+|.. ..+ +..+...-+-+
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~-fa~------------E~~gv~PDivt 288 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKM-FAF------------EHFGVEPDIVT 288 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccc-hhh------------hhcCCCCCEEE
Confidence 355555554476666655 6669999999999999999999999999888843 232 23345566888
Q ss_pred CccccCCCCceEEEEEecCHHHHHHH-HhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
+||.+| .|+++|.++.++ .+.+.. .....++..|+++..+..+.|+...- +.+.++..+.-+++.+.|.++
T Consensus 289 ~aK~ig-~G~Pl~avv~r~-ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~-----e~L~~~a~~~G~~l~~~L~~l~ 361 (447)
T COG0160 289 LAKSLG-GGLPLSAVVGRA-EIMDWPPGGHGGTFGGNPVACAAALAVLDVIEE-----ENLLERAAELGEYLRDRLEELQ 361 (447)
T ss_pred eccccc-CCCceeEEeccH-HhcccCCcccCCCCCcCHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 699999999964 444422 22333455888888888887774321 133444444455555555443
Q ss_pred -CCceec--CCceEEEEEecCccc--cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 168 -GISCLK--SNAGLFCWVDMRHLL--SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 168 -g~~~~~--~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
...+.. ..-|.++.+++.... ..+......+++..++ +.|+.+..+..++ +.+||.+.. .+++++++++
T Consensus 362 ~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~-~~Glil~~~G~~~----nviRi~PPL~is~e~~d~~l 436 (447)
T COG0160 362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAF-ERGLLLLTCGPHG----NVLRILPPLTISDEELDEGL 436 (447)
T ss_pred hhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHH-HcCCEEeccCCCC----cEEEEeCCcccCHHHHHHHH
Confidence 122221 222577778877532 1222244456777777 6699888766554 589999964 6999999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
+.|.+++++.
T Consensus 437 ~il~~al~~~ 446 (447)
T COG0160 437 DILEEALKEA 446 (447)
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-15 Score=123.50 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=146.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+.|+|+.-..-..-|-..| +++|.+++++||+++++||+|....+ |.......+.++- +.+.+++.+++
T Consensus 193 r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~-G~tGrGt~E~~~v-------m~~vdiinsTL 261 (417)
T KOG1359|consen 193 RLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFF-GETGRGTAEEFGV-------MGDVDIINSTL 261 (417)
T ss_pred eEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceee-cCCCCChHHHhCC-------CCcceehhhhh
Confidence 4555444444567788888 99999999999999999999997755 4555566666552 56788999999
Q ss_pred ccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 91 SKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 91 sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
+|++| +.| ||..+|.+.+.-...+..+|...|++...++....+.... --.-.+..+..+.+.+++++.++..|+
T Consensus 262 gKAlGga~G---Gyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dl-lm~s~~~i~~~~a~~qrfr~~me~aGf 337 (417)
T KOG1359|consen 262 GKALGGASG---GYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL-LMVSSKEIQSRQANTQRFREFMEAAGF 337 (417)
T ss_pred hhhhcCCCC---CCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99997 778 9999976554444455556655555443333333332221 111233445566777889999988898
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
.+...+- .++.+-+.+. .-+.+++.+|+ +.||.|..-++.- |.+...+|+.++. ++++++|++++++.++
T Consensus 338 tIsg~~h-PI~pv~lGda------~lA~~~ad~lL-k~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~v 409 (417)
T KOG1359|consen 338 TISGASH-PICPVMLGDA------RLASKMADELL-KRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEV 409 (417)
T ss_pred eecCCCC-CccceecccH------HHHHHHHHHHH-hcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHH
Confidence 8776442 2333334432 22356889999 5599998443332 2345678888854 8999999999999888
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
.+..
T Consensus 410 gr~~ 413 (417)
T KOG1359|consen 410 GRFL 413 (417)
T ss_pred HHhh
Confidence 7654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=130.47 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=86.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|..... +. ++ ..+.++++.|
T Consensus 143 ~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~-~~---~~-------------~~g~Divv~S 202 (391)
T TIGR01328 143 DNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPML-TN---PV-------------ALGVDVVVHS 202 (391)
T ss_pred cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhcc-CC---ch-------------hcCCCEEEcc
Confidence 57899999999999999998 88999999999999999999974322 11 11 1134488899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhc--ccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKM--SSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~--~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+||.+|.+|.++ |++++ ++.+.+.+... ... + ..++.....+...++. +..+.++..++.+.+.+.|
T Consensus 203 ~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-------l~~r~~~~~~na~~la~~L 274 (391)
T TIGR01328 203 ATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-------LNIRMKRHSENAMKVAEYL 274 (391)
T ss_pred ccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-------HHHHHHHHHHHHHHHHHHH
Confidence 999998888775 66666 44544444322 112 1 1333333333332332 2344555677777788888
Q ss_pred Hhc
Q 044773 165 EKA 167 (289)
Q Consensus 165 ~~~ 167 (289)
+++
T Consensus 275 ~~~ 277 (391)
T TIGR01328 275 KSH 277 (391)
T ss_pred HhC
Confidence 776
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-14 Score=129.73 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=88.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|....+ .. ++ ++ +.++++.|
T Consensus 138 ~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~-~~---pl-~~------------g~Divv~S 197 (380)
T TIGR01325 138 PNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVL-QQ---PL-KL------------GADVVVYS 197 (380)
T ss_pred CCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CC---ch-hh------------CCCEEEee
Confidence 47899999999999999988 89999999999999999999975322 11 11 12 34588899
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhc-cccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKM-SSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~-~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++.+|.++ |+++++++ +.+.+... ...+. .++.. ++.++..... +..+.+...++++.+.+.|++
T Consensus 198 ~sK~l~g~g~~~gG~vv~~~~-~~~~l~~~~~~~g~~~~p~~---a~~~l~~l~t----l~~r~~~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 198 ATKHIDGQGRVMGGVIAGSEE-LMAEVAVYLRHTGPAMSPFN---AWVLLKGLET----LSLRMQKQFDSALAIAEWLQA 269 (380)
T ss_pred ccceecCCCCeEEEEEEeCHH-HHHHHHHHHHhhCCCCCHHH---HHHHHhccCc----HHHHHHHHHHHHHHHHHHHHc
Confidence 999998778777 67777544 44444333 22221 22232 3334443322 344556667777788888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 270 ~ 270 (380)
T TIGR01325 270 Q 270 (380)
T ss_pred C
Confidence 6
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-14 Score=130.62 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=134.3
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++.+|++....+..|.+ .+++.+++|.++|+++|+++|+||++.+++.+|..+ ..+.. +...-+.
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~--a~~~~-----------gv~pDi~ 272 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS--SISHF-----------NITPDLM 272 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH--HHHhc-----------CCCCCEe
Confidence 356665555446667776 788999999999999999999999999875555421 11111 1112256
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|+++++ +.+.+.+.... .....+++...++.+.|+..+. + ...++.+++.+++.+.|++
T Consensus 273 t~gK~l~-~G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~----~l~~~~~~~g~~l~~~L~~ 345 (445)
T PRK08593 273 SFGKSLA-GGMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-E----SLLQRSAEKGEYARKRFDQ 345 (445)
T ss_pred eeccccc-CCcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHHHHH
Confidence 8999998 88999999995 45555443211 1223677777776666654321 1 2334444444555555544
Q ss_pred c----CCceecCCceEEEEEecCccc--cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHH
Q 044773 167 A----GISCLKSNAGLFCWVDMRHLL--SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKL 239 (289)
Q Consensus 167 ~----g~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~ 239 (289)
+ ++......-|.++.+.+.... ..........+...++ ++||.+.+.. ...+|++++. +++++++.
T Consensus 346 l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~~------~~~lr~~p~l~~t~~~id~ 418 (445)
T PRK08593 346 WVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHGVVIIAVA------GNVLRFQPPLVITYEQLDT 418 (445)
T ss_pred HHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCCeEEeccC------CCEEEEECCCccCHHHHHH
Confidence 2 322222223445555554211 1111112234666665 6799987531 2479999954 79999999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSITT 253 (289)
Q Consensus 240 ~l~~l~~~l~~~~~ 253 (289)
+++++.+++++...
T Consensus 419 ~~~~l~~~l~~~~~ 432 (445)
T PRK08593 419 ALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=127.28 Aligned_cols=220 Identities=13% Similarity=0.085 Sum_probs=134.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++.++.. ++|+|+++++.+ |...+ +++|.++|+++|+++|+|++|+...+. .+. ... ...
T Consensus 160 le~~l~~~-~~klVi~~~~~~--g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~-~g~-~~~-----------~~~ 220 (416)
T PRK13034 160 VEELAKEH-KPKLIIAGFSAY--PRELD---FARFREIADEVGALLMVDMAHIAGLVA-AGE-HPN-----------PFP 220 (416)
T ss_pred HHHHHhhc-CCeEEEECCCcc--ccccC---HHHHHHHHHHcCCEEEEeCcccccCcc-cCC-CCC-----------CCC
Confidence 34555443 578887766643 55555 888899999999999999999854332 111 000 012
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHhccccC-C--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFG-L--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~-~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
+.+++++|++|+++ ..| |+++++++.+...++.....+ . ..+....++...+. ..+.....+.+++++++.
T Consensus 221 ~~Di~~~s~~K~l~g~~G---G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~--~~~~~~~~~~~~~l~~~a 295 (416)
T PRK13034 221 HAHVVTTTTHKTLRGPRG---GMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFG--EALQPEFKTYAKQVIANA 295 (416)
T ss_pred CceEEEEeCcccCCCCCC---eEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHH--HHhChhHHHHHHHHHHHH
Confidence 35688999999994 345 888887766665554432111 1 12222222221222 111122345578899999
Q ss_pred HHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC----CCCCCCCCeEEEEEe--
Q 044773 158 RKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS----SCHCTEPGWFRVCFA-- 230 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~----~f~~~~~~~~Ris~~-- 230 (289)
++|.+.|.+.|+++..+ ..+...++.+...... .......+++.||.+.+-. .-.+..+..+|+++.
T Consensus 296 ~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~------~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~ 369 (416)
T PRK13034 296 QALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLS------GKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAG 369 (416)
T ss_pred HHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCC------HHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHH
Confidence 99999999889887643 2334555666543211 2344344567899987421 111223567999973
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHH
Q 044773 231 ---NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 231 ---~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+++++++++++.|++++...
T Consensus 370 t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHHHhcC
Confidence 246899999999999998743
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=130.97 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=125.6
Q ss_pred hHHHhhhCCCccEEE-EeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVL-VTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~-l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++++++ +++|+||+|.+.+ +++|.++|+++|+.+|+|++|+. ......++
T Consensus 141 le~ai~--~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~~~~~~~~----------- 198 (363)
T TIGR01437 141 LEAAIT--EKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------DLQKYYRL----------- 198 (363)
T ss_pred HHHhcC--hhceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------chHHHHHc-----------
Confidence 455554 5678765 6788999999999 78899999999999999999971 11111111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+.++++.|++|.+ +|.+.|+++.+++.+ +.+.... .. ..........+..+++.. .+...+..+.+.++
T Consensus 199 -g~D~~~~S~~K~l--~gp~~G~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~---~~~~~~~~~~~~~~ 271 (363)
T TIGR01437 199 -GADLVIYSGAKAI--EGPTSGLVLGKKKYI-EWVKLQSKGIGRAMKVGKENILGLTAALEQY---LSTGKESGAEMVAK 271 (363)
T ss_pred -CCCEEEEeCCccc--CCCceEEEEEcHHHH-HHHHhccCCCcceeccCHHHHHHHHHHHHHH---HccCcccHHHHHHH
Confidence 3457889999987 466799999854443 3332211 11 111122222333333211 11222333444556
Q ss_pred HHHHHHHHHhc-CCceecCC--ceE-----EEEEecCccccCCChhhHHHHHHHHHHhcC--eEEeCCCCCCCCCCCeEE
Q 044773 157 HRKLVSGLEKA-GISCLKSN--AGL-----FCWVDMRHLLSSNTFEAEMELWKKIVYDVK--LNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 157 ~~~l~~~l~~~-g~~~~~~~--~g~-----~~~i~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~~~~R 226 (289)
++.+.+.|.+. |+++..+. .+. -+.++... .. .+..++.+.|. +.+ |.+++ .| .+++.+|
T Consensus 272 ~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~--~g---~~~~~l~~~L~-~~~~~I~~r~--~~--~~~~~~~ 341 (363)
T TIGR01437 272 LTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE--LG---MTAADVVQALR-QGEPAIYTRG--YK--ANEGIIE 341 (363)
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC--CC---CCHHHHHHHHh-cCCCCEEEee--ee--ecCCeEE
Confidence 77899999887 87766321 111 12222211 01 12346777664 556 66655 23 3467899
Q ss_pred EEEecCCHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l 248 (289)
+++..++++|++.++++|++++
T Consensus 342 l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 342 IDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred EEeecCCHHHHHHHHHHHHHhC
Confidence 9997678999999999998753
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-14 Score=126.11 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=93.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. .+ . ++ +-++++.|
T Consensus 137 ~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~-~p-l---~~------------GaDivv~S 196 (388)
T PRK08861 137 KKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ-KP-L---EL------------GADFVIHS 196 (388)
T ss_pred cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC-CC-c---cc------------CCCEEEee
Confidence 57999999999999999999 788899999999999999999853221 11 1 11 34589999
Q ss_pred CccccCCC-CceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLP-GFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+ +...|+++++++.+.+.+....... ..++.....+.+-++. +.-+.++..++...+.+.|++
T Consensus 197 ~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------l~lR~~~~~~~a~~~a~~L~~ 269 (388)
T PRK08861 197 TTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-------LGARMRVHEESAQQILAYLQT 269 (388)
T ss_pred cceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHh
Confidence 99999744 5788999986666655554433332 2455555555555554 344455566777778888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 270 ~ 270 (388)
T PRK08861 270 Q 270 (388)
T ss_pred C
Confidence 6
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-14 Score=127.28 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=90.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... .. ++ .. +.++++.|
T Consensus 145 ~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~-~~---p~-~~------------gaDivv~S 204 (388)
T PRK07811 145 PRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYL-QQ---PL-AL------------GADVVVHS 204 (388)
T ss_pred cCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCcccc-CC---ch-hh------------CCcEEEec
Confidence 47899999999999999877 99999999999999999999985322 11 11 11 33488999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhcccc-CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSF-GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~-~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+| .+.||++++++.+.+.+...... +. .++.....+...++. +..+.+...++.+.+.+.|++
T Consensus 205 ~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t-------l~~R~~~~~~na~~la~~L~~ 277 (388)
T PRK07811 205 TTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT-------LAVRMDRHSENAEAVAEFLAG 277 (388)
T ss_pred CceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999998554 67899999777776655544332 21 333433333333332 344445566777888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 278 ~ 278 (388)
T PRK07811 278 H 278 (388)
T ss_pred C
Confidence 6
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=132.33 Aligned_cols=218 Identities=15% Similarity=0.078 Sum_probs=133.9
Q ss_pred hHHHhhhC-CCccEEEEeC-CCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTN-PSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~-p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+ .++.+|++.. .++..|..+ +.+++++|.++|++||+++|+||+|.+++.+|..+. .+.
T Consensus 189 l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a--~~~--------- 257 (423)
T PRK05964 189 LEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFA--CEQ--------- 257 (423)
T ss_pred HHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhH--HHh---------
Confidence 34455443 3455655543 266677655 899999999999999999999999988766553221 111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--------cccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--------SSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
.+....+.+++|.++.+++++|+++++ +.+.+.+... .+.+..|++...++.+.++...- + ...
T Consensus 258 --~~v~pDi~~~~K~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~-~----~~~ 329 (423)
T PRK05964 258 --AGVSPDIMCLSKGLTGGYLPLAATLCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED-E----PVL 329 (423)
T ss_pred --cCCCCCeeeeehhhhcCcccceEEEEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh-c----CHH
Confidence 122233567899998333899998884 5555544321 12223677777776666653211 1 223
Q ss_pred HHHHHHHHHHHHHHHhc-CCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+++++..+++.+.|++. .... .... |.++.+.+...... .....+...|+ ++||.+.+.. +.+|
T Consensus 330 ~~~~~~g~~l~~~l~~l~~~~~i~~vrg~-Gl~~~i~l~~~~~~---~~~~~l~~~l~-~~Gv~v~~~~-------~~lR 397 (423)
T PRK05964 330 ERVAALSAGLAEGLEPFRDLPGVADVRVL-GAIGAVELDRPVLE---RDGPALRAFAL-ERGVLLRPLG-------NTIY 397 (423)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEeecc-cEEEEEEeccCcch---hHHHHHHHHHH-HCCeEEEecC-------CEEE
Confidence 44445555555555544 2221 1223 45555666532110 11234666665 6799998632 3799
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|++.. ++++|++.+++++.+++++
T Consensus 398 ~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 398 LMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHhh
Confidence 99853 7999999999999999875
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=131.69 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=138.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++|+||||.+.+ +++|.++|+++|+++++|++++. +..+..+.+ .+.++++.|
T Consensus 141 ~~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~----g~~~~~~~~------------~~~D~~~~s 201 (402)
T TIGR02006 141 DDTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSV----GKIPINVNE------------LKVDLMSIS 201 (402)
T ss_pred CCCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhc----CCcccCccc------------cCCCEEEEe
Confidence 46889999999999999998 88999999999999999999974 222222222 245688899
Q ss_pred CccccCCCCceEEEEEecCHHHHHH--HHhc------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAA--ATKM------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~--~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
.+|.+|.+| +|+++++++..... .... ...++.+.....++...++. +...++...+++++.++++.
T Consensus 202 ~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~ 276 (402)
T TIGR02006 202 GHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMAQDTAHVLALRDRLL 276 (402)
T ss_pred hhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHH
Confidence 999887446 89988865432211 1110 01123444555555555543 24456777888999999999
Q ss_pred HHHHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------------
Q 044773 162 SGLEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT----------------- 220 (289)
Q Consensus 162 ~~l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~----------------- 220 (289)
+.|.++ ++.+..+.. ...+.+.+.. ... ..+...+ .+|.+..|..|.+.
T Consensus 277 ~~l~~~~~v~~~~~~~~~~p~~~~v~f~~-~~~------~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~ 346 (402)
T TIGR02006 277 NGIKSIEEVYLNGDLEHRVPGNLNVSFNY-VEG------ESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDEL 346 (402)
T ss_pred HHHhcCCCEEEeCCccccCCCeEEEEEeC-cCH------HHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhh
Confidence 999876 555443211 0011122221 111 2233322 48988888877541
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.+|+|++. ++++|++.+++.|+++++....
T Consensus 347 ~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 347 AHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 13789999975 7999999999999999877543
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-14 Score=126.13 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++..+ ++|+|++++|+||||.+++ +++|+++|+++|+++|+|++|... .. ..++ .+ +
T Consensus 130 ~~~i~~~-~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~-~~---~~~l-~~------------G 188 (385)
T PRK08574 130 IEAIKEG-RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATP-LL---YRPL-RH------------G 188 (385)
T ss_pred HHhcCcc-CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcc-cc---CChh-hh------------C
Confidence 4444432 7899999999999999999 889999999999999999999632 11 1111 11 4
Q ss_pred ceEEEecCccccCCCCce-EEEEEecCHHHHHHHHhccc-cCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFR-VGAIYSNDDTVVAAATKMSS-FGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r-~G~i~~~~~~~~~~~~~~~~-~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.++++.|+||+++.+|-. .|++++.++.+.+.+..... ++. .+++....+...++. +..+.+...++.+.
T Consensus 189 aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-------L~~R~~~~~~na~~ 261 (385)
T PRK08574 189 ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-------LEVRFERQCRNAMA 261 (385)
T ss_pred CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHH
Confidence 568999999999766654 47677766666655543333 221 333323222222222 23344444556677
Q ss_pred HHHHHHhc
Q 044773 160 LVSGLEKA 167 (289)
Q Consensus 160 l~~~l~~~ 167 (289)
+.+.|+++
T Consensus 262 la~~L~~~ 269 (385)
T PRK08574 262 IAEFLSEH 269 (385)
T ss_pred HHHHHHcC
Confidence 77777765
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=130.38 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=135.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. ++++++++++++||||.+.+ +++|.++|+++|+++|+|++++. +....++.. .
T Consensus 137 l~~~i~--~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~----g~~~~~~~~------------~ 195 (404)
T PRK14012 137 LEAAMR--DDTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV----GKVPIDLSK------------L 195 (404)
T ss_pred HHHhcC--CCCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc----CCcccCccc------------C
Confidence 344443 46899999999999999998 89999999999999999999973 222222221 2
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+.++++.|++|.+| |+ ++|+++++++......... ...++.+......+.+++... .....+..++.
T Consensus 196 ~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~---~~~~~~~~~~~ 270 (404)
T PRK14012 196 KVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA---KEEMATENERI 270 (404)
T ss_pred CCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH---HhhHHHHHHHH
Confidence 34577889999887 54 6899988654322111100 011222333334444444322 23345566777
Q ss_pred HHHHHHHHHHHHhc-CCceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------- 220 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------- 220 (289)
++..+++.+.|+++ ++.+.++ ...+++++...+. .++...+ .++.+..|..|.+.
T Consensus 271 ~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l---~~~~i~~g~~~~~~~~~~~~~ 338 (404)
T PRK14012 271 RALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMAL---KDLAVSSGSACTSASLEPSYV 338 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhC---CCeEEEchhhhCCCCCCCCHH
Confidence 88888888888775 4444321 1233455544221 2344443 27777777666432
Q ss_pred ----------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 ----------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ----------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+.+|+++.. ++++|++.+++.|+++++...
T Consensus 339 ~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 339 LRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred HHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 13689999965 799999999999999887653
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=133.82 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=132.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE--ecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLIS--DEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~--Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++++| ||||.+.+ +++|.++|+++|+++++ |.+.. +... .. +..+.++++
T Consensus 203 ~~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~-----g~~~-~~------------~~~~~D~~~ 260 (447)
T PRK00451 203 DDTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSL-----GLLK-PP------------GEYGADIVV 260 (447)
T ss_pred CCeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHh-----ccCC-Cc------------ccCCCCEEE
Confidence 57899999999 89999977 99999999999999988 43321 1110 00 123445665
Q ss_pred e---cCccccCCCCceEEEEEecCHHHHHH---------------------------HHhccccCCC--ChHHH-HHHHH
Q 044773 88 Y---SLSKDLGLPGFRVGAIYSNDDTVVAA---------------------------ATKMSSFGLV--SSQTQ-YLLSA 134 (289)
Q Consensus 88 ~---s~sK~~g~~G~r~G~i~~~~~~~~~~---------------------------~~~~~~~~~~--~~~~q-~~~~~ 134 (289)
+ +|||.++++|.++||++++++.+... .+........ +...+ .+++.
T Consensus 261 ~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~ 340 (447)
T PRK00451 261 GEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAI 340 (447)
T ss_pred ECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHH
Confidence 5 78888877888999999865444331 0111111111 11222 22222
Q ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEE--EecCccccCCChhhHHHHHHHHHHhcCeE-
Q 044773 135 LLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCW--VDMRHLLSSNTFEAEMELWKKIVYDVKLN- 210 (289)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~--i~~~~~~~~~~~~~~~~~~~~ll~~~gi~- 210 (289)
.+.... +..+++.++++.++++++.+.|+++ |+++. ++++|.+ ++++. +..++++.|+++ ||.
T Consensus 341 ~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~--------~~~~~~~~L~~~-gi~~ 407 (447)
T PRK00451 341 YMSLLG--PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK--------PAEEVNEALLEK-GILG 407 (447)
T ss_pred HHHHHC--HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC--------CHHHHHHHHHhc-CCCC
Confidence 222111 4457888899999999999999988 67665 3444443 44421 124688888755 665
Q ss_pred EeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 211 ISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 211 v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
..++..+++...+++|+++.. +++++++++++.|++++
T Consensus 408 ~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 408 GYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 456666664445789999963 69999999999998754
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=129.79 Aligned_cols=209 Identities=15% Similarity=0.171 Sum_probs=129.6
Q ss_pred CccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|++...++..|... +.+.+++|.++|+++|+++|+||+|.+++.+|..+.. +.. +...-+.+
T Consensus 179 ~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~--~~~-----------gv~PDi~t 245 (395)
T PRK03715 179 KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAY--ELS-----------GIEPDIMT 245 (395)
T ss_pred CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhH--hhc-----------CCCCceee
Confidence 466656554466777764 6889999999999999999999999987665554211 111 11123578
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
++|.+| .|+++|.++++++. ...... ..+.+..+++...++.+.|+... + ....++++++.+++.+.|+++
T Consensus 246 ~gK~lg-~G~p~~av~~~~~i-~~~~~~~~~~T~~g~pl~~aaala~L~~l~---~--~~l~~~~~~~g~~l~~~L~~l~ 318 (395)
T PRK03715 246 LGKGIG-GGVPLAALLAKAEV-AVFEAGDQGGTYNGNPLMTAVGVAVISQLL---A--PGFLEGVRARGEYLKEKLLELS 318 (395)
T ss_pred ehhhhh-CCcceEEEEEcccc-ccccCCCcCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHh
Confidence 999998 78999999996554 322111 12222356666666555554321 1 234555666666666666543
Q ss_pred ---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 168 ---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 168 ---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
++...... |.++.+.+.+.... ...+.+..+. +.||.+.+.. ...+||++.. ++++++++++++
T Consensus 319 ~~~~i~~vrG~-Glm~~i~l~~~~~~----~~~~~~~~~~-~~Gi~~~~~~------~~~lR~~p~l~~t~~ei~~~~~~ 386 (395)
T PRK03715 319 EERGLEGERGE-GLLRALLLGKDIGP----QIVEKARDMQ-PDGLLLNAPR------PNLLRFMPALNVTTEEIDQMIAM 386 (395)
T ss_pred hcCCcCeEEcc-eeEEEEEecCchHH----HHHHHHHhcc-CCCEEEeecC------CCEEEEeCCcccCHHHHHHHHHH
Confidence 43322233 55666776542110 1111222222 3399987432 2579999954 799999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|.+++++.
T Consensus 387 l~~~l~~~ 394 (395)
T PRK03715 387 LRSVLDKL 394 (395)
T ss_pred HHHHHHhh
Confidence 99988753
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-14 Score=126.86 Aligned_cols=204 Identities=15% Similarity=0.153 Sum_probs=123.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... . .++ ++ +.++++.|
T Consensus 137 ~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~-~---~~~-~~------------g~Divv~S 196 (390)
T PRK08064 137 PNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLL-Q---KPL-DL------------GADVVLHS 196 (390)
T ss_pred CCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccc-c---Cch-hh------------CCcEEEee
Confidence 47899999999999999987 88999999999999999999975311 1 111 12 44588999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
+||.++ .+|.-.|+++++++.+.+.+......+..+...+.+.. ++.... .+..+.+...++...+.+.|++++
T Consensus 197 ~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl~----tl~~R~~~~~~~a~~la~~L~~~~ 271 (390)
T PRK08064 197 ATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGLK----TLHVRLEHSSETANKIALYLQEHP 271 (390)
T ss_pred cceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHcccC----cHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999985 34567788888766666666554433222221222211 333222 244555556777777888887752
Q ss_pred -C-ceecC----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCe---EEeCC------------C
Q 044773 169 -I-SCLKS----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKL---NISPG------------S 215 (289)
Q Consensus 169 -~-~~~~~----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~pg------------~ 215 (289)
+ ++..| ..|-.+.+++.. . +-+..+++..++ .+.-| .
T Consensus 272 ~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~---~-------~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~ 341 (390)
T PRK08064 272 KVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS---E-------EAVRQFVSHVKLPVFAVSLGAVESILSYPAKMS 341 (390)
T ss_pred CcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC---H-------HHHHHHHHhCCcceEcccCCCCcceeECCcccc
Confidence 1 11111 122244455532 1 123445556676 33333 1
Q ss_pred CCCC---------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 216 SCHC---------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 216 ~f~~---------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
++.. ..++.+|+|++- |+.+++++.|.+++++.
T Consensus 342 h~~~~~~~~~~~gi~~~liR~SvGl---e~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 342 HAAMPKEERDERGITDGLLRLSVGL---ENVDDLIADFEQALSYV 383 (390)
T ss_pred cccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence 1111 124789999996 56677777777777664
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=126.05 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=86.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... +. ++ .+ +.+++++|
T Consensus 149 ~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~-~~---~l-~~------------g~Di~v~S 208 (403)
T PRK07503 149 DKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL-QR---PL-EL------------GADLVVHS 208 (403)
T ss_pred ccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CC---ch-hh------------CCCEEEcc
Confidence 47899999999999999998 89999999999999999999985422 21 11 12 33488999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhc--ccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKM--SSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+||.++.+| .+.|+++.+ +.+.+.++.. ... ...+++....+...++. +..+.+...++.+.+.+.|
T Consensus 209 ~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~r~~~~~~na~~~a~~L 280 (403)
T PRK07503 209 ATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKT-------LALRMDRHCASAQAVAEWL 280 (403)
T ss_pred ccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcch-------HHHHHHHHHHHHHHHHHHH
Confidence 999998655 788988864 4455544421 211 22444444444333332 2333333446666777777
Q ss_pred Hhc
Q 044773 165 EKA 167 (289)
Q Consensus 165 ~~~ 167 (289)
+++
T Consensus 281 ~~~ 283 (403)
T PRK07503 281 ARH 283 (403)
T ss_pred HhC
Confidence 765
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=124.84 Aligned_cols=131 Identities=16% Similarity=0.236 Sum_probs=90.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+ .. + .++ +.++++.|
T Consensus 133 ~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~-~~---p-~~~------------g~Divv~S 192 (377)
T PRK07671 133 PNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYW-QS---P-ISL------------GADIVLHS 192 (377)
T ss_pred CCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCcccc-CC---h-hhh------------CCeEEEec
Confidence 57899999999999999987 89999999999999999999975322 11 1 112 34589999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||++|.++ .-.|+++++++.+.+.+....... ..++.... .++... +.+..+.+...++.+.+.+.|++
T Consensus 193 ~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~---l~~~~l----~tl~~R~~~~~~na~~la~~L~~ 265 (377)
T PRK07671 193 ATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSW---LLLRGL----KTLGIRMEEHETNSRAIAEFLNN 265 (377)
T ss_pred CcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHH---HHHcCc----ChHHHHHHHHHHHHHHHHHHHHc
Confidence 999997443 456788887766666655544432 13333222 233322 12444566667888888888887
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 266 ~ 266 (377)
T PRK07671 266 H 266 (377)
T ss_pred C
Confidence 6
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=126.99 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=131.4
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|.+ .+.+.++++.++|++||+++|.||++.+++.+|..+. .. .. +...-+.
T Consensus 213 ~iAA-vi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~-~~-~~-----------gv~PDiv 278 (451)
T PRK07678 213 TIAA-VIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFG-FM-NY-----------GVKPDII 278 (451)
T ss_pred ceEE-EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHH-HH-hc-----------CCCCCEE
Confidence 4555 45556 5445655 5778999999999999999999999998866664321 11 11 2222355
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++|.+| .| +++|.++++++ +.+.+.. ..+.+..|++...++.+.|+...- + ...++.++..++
T Consensus 279 t~gK~lg-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~----~~~~~~~~~g~~ 351 (451)
T PRK07678 279 TMAKGIT-SAYLPLSATAVKKE-IYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN-E----NLIERSAQLGEL 351 (451)
T ss_pred Eeecccc-cCCcceeEEEEcHH-HHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-C----CHHHHHHHHHHH
Confidence 7899998 67 79999999654 4444431 122333777777777777664321 1 223344444444
Q ss_pred HHHHHH----hcCCceecCCceEEEEEecCccccC-C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-
Q 044773 160 LVSGLE----KAGISCLKSNAGLFCWVDMRHLLSS-N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 160 l~~~l~----~~g~~~~~~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~- 231 (289)
|.+.|+ ++++......-|.+..+.+...... . .......+...++ +.||.+.+....-+.....+||++..
T Consensus 352 l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~-~~Gv~~~~~g~~v~~~~~~lrl~Ppl~ 430 (451)
T PRK07678 352 LLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK-EKGLIIGKNGDTVAGYNNVLTLSPPLV 430 (451)
T ss_pred HHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH-HCCcEEeecCccccCCCCEEEEECCCc
Confidence 444443 3343222222245555666432110 0 0111234666665 67999976322111223679999864
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~ 251 (289)
++++|++++++++.+++++.
T Consensus 431 it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 431 ISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 79999999999999988653
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=125.45 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=130.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++ +++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|... ....++ ++
T Consensus 124 le~~i~--~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~----~~~~~l-~~------------ 181 (378)
T TIGR01329 124 VKAALG--PKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSP----LLCNPL-EL------------ 181 (378)
T ss_pred HHHhcC--cCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccc----ccCChh-hc------------
Confidence 344443 57999999999999999998 999999999999999999998532 111221 22
Q ss_pred CceEEEecCccccCCC-CceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+-+++++|++|.++.+ ++..|+++++++.+.+.+..... .+ ..++.....+..-++. +..+.+.-.++..
T Consensus 182 g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t-------l~~R~e~~~~na~ 254 (378)
T TIGR01329 182 GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT-------LAIRIEKQQENAR 254 (378)
T ss_pred CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC-------HHHHHHHHHHHHH
Confidence 3458999999999643 57899999977666554544332 22 1333333222222222 3334444455555
Q ss_pred HHHHHHHhc-CC-ceec----------------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-
Q 044773 159 KLVSGLEKA-GI-SCLK----------------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC- 219 (289)
Q Consensus 159 ~l~~~l~~~-g~-~~~~----------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~- 219 (289)
.+.+.|+++ .+ ++.. ...|-.+.+++.. . ....+++..| +..++.+.-|.....
T Consensus 255 ~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-~-----~~~~~~~~~L-~~~~i~~s~G~~~sl~ 327 (378)
T TIGR01329 255 AIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS-V-----ALSKRLVEAT-KLFSITVSFGSVNSLI 327 (378)
T ss_pred HHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-H-----HHHHHHHHhC-cCcccccCCCCCCcee
Confidence 566666654 11 1111 0112244455632 1 2234566666 566777666654431
Q ss_pred --------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 220 --------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 --------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+|||++. |+.+.+++.|.+++++.
T Consensus 328 ~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 328 SMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVTA 376 (378)
T ss_pred eCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence 114689999997 77888888888887743
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-15 Score=132.14 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=130.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++++|++|+. +....++. .++.++++.|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~----g~~~~~~~------------~~~~D~~~~s 197 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVV----GKITVDLS------------ADRIDLISCS 197 (353)
T ss_pred CCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhc----CCcccccc------------ccCCCEEEee
Confidence 46899999999999999999 89999999999999999999873 22222221 2356688889
Q ss_pred CccccCCCCceEEEEEecCHHHHHH-HHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAA-ATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~-~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.+|.+|.+| +|+++++++..... ..- ....++.+.....++..+++. +....++..++++++.++
T Consensus 198 ~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~ 272 (353)
T TIGR03235 198 GHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI---ARRNAQAWEVKLRAMRNQ 272 (353)
T ss_pred hhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHH
Confidence 999877445 89998876532111 110 011223444555556655553 234567788899999999
Q ss_pred HHHHHHhcCCceecCCce---EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEEecCCH
Q 044773 160 LVSGLEKAGISCLKSNAG---LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSE 234 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g---~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~~Ris~~~~~~ 234 (289)
+++.|.+.|+++..+... .+..+.++. . +..++...| ++ +|.+.+|..|+... +.++|.+++. ++
T Consensus 273 l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~------~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~-~~ 342 (353)
T TIGR03235 273 LRDALQTLGVKLNGDPAETIPHILNFSIDG-V------NSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGL-DT 342 (353)
T ss_pred HHHHhccCCeEEeCCcccccCCEEEEEeCC-c------CHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCC-CH
Confidence 999998888887643321 123233332 1 113455555 45 89999999997643 3478888884 66
Q ss_pred HHHHHH
Q 044773 235 DTLKLS 240 (289)
Q Consensus 235 e~l~~~ 240 (289)
+++..+
T Consensus 343 ~~~~~~ 348 (353)
T TIGR03235 343 DRARGA 348 (353)
T ss_pred HHhCcc
Confidence 655543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=124.65 Aligned_cols=211 Identities=14% Similarity=0.120 Sum_probs=132.1
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ..-.|.. .+.+.+++|.++|+++|+++|+||++.+++..|..+ ....+ + -..| +.
T Consensus 221 ~iaa-vi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~-g-------v~pD----iv 286 (441)
T PRK05769 221 EVAA-IIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHF-G-------VEPD----II 286 (441)
T ss_pred ceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhcc-C-------CCCC----EE
Confidence 4555 45556 5556764 467899999999999999999999999876555432 11111 1 0112 23
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+|||.+| .|+++|+++++++. .+.... ....+..+++.+.++.+.|+.. ++ ...++++++.++|.+.|+++
T Consensus 287 t~~K~l~-~G~p~gav~~~~~i-~~~~~~~~~~T~~g~p~~~aaa~a~L~~l---~~---~~~~~~~~~g~~l~~~L~~l 358 (441)
T PRK05769 287 TLAKAIA-GGLPLGAVIGRAEL-MFLPPGSHANTFGGNPVAAAAALATLEEL---EE---GLLENAQKLGEYLRKELKEL 358 (441)
T ss_pred EEccccc-CCcccEEEEEehhh-hhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHH
Confidence 6899998 88999999996544 333321 1222335777777766666532 22 45566667777777777654
Q ss_pred ----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 168 ----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 168 ----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
++......-|.++.+.+..............+...++ +.||.+.|. +...+|++++. +++++++++++
T Consensus 359 ~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~ 431 (441)
T PRK05769 359 KEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF-KRGLLLLGA------GKSAIRIIPPLIITEEEADIGLE 431 (441)
T ss_pred HHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH-hCCcEEecC------CCCEEEEeCCCCCCHHHHHHHHH
Confidence 2211222225566566643211111111234566665 679998753 23579999864 79999999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
++.+++.+
T Consensus 432 ~l~~~l~~ 439 (441)
T PRK05769 432 ILEEAIKE 439 (441)
T ss_pred HHHHHHHH
Confidence 99998865
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=125.02 Aligned_cols=212 Identities=13% Similarity=0.119 Sum_probs=135.1
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ..-.|.. .+++.++++.++|++||+++|+||++.+++.+|..+. .+.. +...-+.
T Consensus 231 ~iAa-vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a--~e~~-----------gv~PDiv 296 (459)
T PRK11522 231 DVAA-VILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA--CEHE-----------NVQPDIL 296 (459)
T ss_pred cEEE-EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhh--hhcc-----------CCCCCEE
Confidence 3445 44555 6556775 4677999999999999999999999988755555321 1111 1112245
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHH-h---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAAT-K---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~-~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+++|.+| .| +++|.++++++ +.+.+. . ..+.+..|++...++.+.|+...- ....++++++.++|.+.
T Consensus 297 t~gK~lg-gG~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-----~~l~~~~~~~g~~l~~~ 369 (459)
T PRK11522 297 CLAKALG-GGVMPIGATIATEE-VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-----QNLPAQAEQKGDYLLDG 369 (459)
T ss_pred Eechhhh-CCCccceeEEEcHH-HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHH
Confidence 8999998 78 79999999644 444332 1 122233577777776666654221 12345566666666666
Q ss_pred HHhc--CCc-e--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 164 LEKA--GIS-C--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 164 l~~~--g~~-~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
|+++ ... + ....-|.++.+.+.... ....+...++ ++||.+.+.. .+...+|+.++. ++++++
T Consensus 370 L~~l~~~~~~~i~~VrG~Gl~~giel~~~~------~~~~i~~~l~-~~Gvl~~~~~----~~~~~lr~~Ppl~~t~~~i 438 (459)
T PRK11522 370 FRQLAREYPDLVQEARGKGMLMAIEFVDNE------IGYNFASEMF-RQRVLVAGTL----NNAKTIRIEPPLTLTIEQC 438 (459)
T ss_pred HHHHHHhCCCceeeEEeceeEEEEEecCch------HHHHHHHHHH-HCCeEEEecC----CCCCEEEEECCccCCHHHH
Confidence 6654 121 1 11123566667775421 1234666666 5799997642 124689999954 799999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 044773 238 KLSMQRLKAFVDSITTT 254 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~~~ 254 (289)
+++++++.+++++..+.
T Consensus 439 d~~l~~l~~~l~~~~~~ 455 (459)
T PRK11522 439 EQVLKAARKALAAMRVS 455 (459)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887653
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=124.82 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=130.5
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ +|..| +.-.|. ..+.+.+++|.++|++||+++|+||++.+++.+|..+.. +.. +...-+.
T Consensus 222 ~iAA-vI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~--~~~-----------gv~PDiv 287 (457)
T PRK05639 222 EVAA-LFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFAS--EWF-----------EVKPDLI 287 (457)
T ss_pred ceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHH--Hhc-----------CCCCCEE
Confidence 5556 44456 555676 457889999999999999999999999987555543211 111 1112244
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+++|.+| .|+++|+++++++ +.+.... ....+..|++...++.+.|+...- ....++.+++.++|.+.|+++
T Consensus 288 ~~gK~l~-gG~pi~av~~~~~-i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L~~l 360 (457)
T PRK05639 288 IFGKGVA-SGMGLSGVIGRKE-LMDLTSGSALLTPAANPVISAAAEATLEIIEE-----ENLLKNALKVGEFIKKRLLEM 360 (457)
T ss_pred Eechhhc-CCCcceeEEehHH-HHhhcCCCcccCCCcCHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHH
Confidence 4899998 7899999999544 4442211 111223666666665555553221 122344444555555555542
Q ss_pred ----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 168 ----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 168 ----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
++......-|.++.+.+..............+...++ ++|+.+.+.. .....+||.+.. +++++++++++
T Consensus 361 ~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~g----~~~~~lr~~Ppl~it~~~id~~~~ 435 (457)
T PRK05639 361 KESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSYG----MFGNVIRITPPLVITKEIAEKGLE 435 (457)
T ss_pred HHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeecC----CCCCEEEEeCCCccCHHHHHHHHH
Confidence 3322222335566566543211111112234666666 6799997642 123689999964 79999999999
Q ss_pred HHHHHHHHHH
Q 044773 243 RLKAFVDSIT 252 (289)
Q Consensus 243 ~l~~~l~~~~ 252 (289)
++.++++...
T Consensus 436 ~l~~~l~~~~ 445 (457)
T PRK05639 436 IMERAIKDAL 445 (457)
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-13 Score=124.16 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=129.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++|++++++|.||.+.+ +++|.++|+++|+++++|.+++. |..+.++. ..+.++++.
T Consensus 169 ~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~------------~~gvD~~~~ 229 (406)
T TIGR01814 169 GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLH------------DWGVDFACW 229 (406)
T ss_pred CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccc------------cCCCCEEEE
Confidence 367999999999999999999 99999999999999999999984 33223322 235679999
Q ss_pred cCccccC-CCCceEEEEEecCHHHHHHHHhcc------------------------ccCCCChHHHHHHHHHhCCchHHH
Q 044773 89 SLSKDLG-LPGFRVGAIYSNDDTVVAAATKMS------------------------SFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 89 s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
|.+|.++ .|| .|..+.+ +.......... ..++.+.+...++..+++... .
T Consensus 230 s~hK~l~g~pG--~~l~v~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~--~ 304 (406)
T TIGR01814 230 CTYKYLNAGPG--AGAFVHE-KHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFD--Q 304 (406)
T ss_pred cCccccCCCCC--eEEEEeh-hhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHH--h
Confidence 9999874 355 3333333 22222111000 012233345455555554321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKA-----GISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~-----g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
.-.++.+++.++..+++.+.|.+. |+++..+.. +..+.+.++ .+. .++...|. ++||.+...
T Consensus 305 ~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~~------~~~~~~L~-~~gi~v~~~ 375 (406)
T TIGR01814 305 AGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VPG------KAVFQALI-KRGVIGDKR 375 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CCH------HHHHHHHH-HCCEEEecc
Confidence 124667778888888888888764 366655421 223344554 111 34666665 669987532
Q ss_pred CCCCCCCCCeEEEEE-e-cCCHHHHHHHHHHHHHHH
Q 044773 215 SSCHCTEPGWFRVCF-A-NMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 215 ~~f~~~~~~~~Ris~-~-~~~~e~l~~~l~~l~~~l 248 (289)
.++.+|+|+ . .++++|++.+++.|++++
T Consensus 376 ------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 376 ------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 235899998 4 479999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-13 Score=121.53 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=66.3
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|... ....++ + .+
T Consensus 143 ~~ai~--~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~----~~~~pl-~------------~g 200 (431)
T PRK08248 143 EAAIT--DKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP----YLLRPI-E------------HG 200 (431)
T ss_pred HHhcC--CCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc----ccCChh-H------------cC
Confidence 44443 46899999999999999999 889999999999999999998631 111111 2 25
Q ss_pred ceEEEecCccccCCCCceEEEEEec
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~ 107 (289)
.++++.|++|.+|.+|.++|++++.
T Consensus 201 aDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 201 ADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred CCEEEEcCccccCCCCCceEEEEEe
Confidence 6689999999999899999998874
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-13 Score=122.45 Aligned_cols=203 Identities=13% Similarity=0.101 Sum_probs=124.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||++ +..++++|.++|+++|+.+|+|++|....+. . ++ .+ +.++++.|
T Consensus 146 ~~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~-~---p~-~~------------g~Divv~S 205 (389)
T PRK05968 146 PGAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQ-R---PI-TL------------GVDLVIHS 205 (389)
T ss_pred ccCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhcc-C---ch-hc------------CCcEEEee
Confidence 4689999998877764 5567999999999999999999999754221 1 11 11 33578889
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhc-c-cc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKM-S-SF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.++.+| .+.|+++++++ +.+.+... . .. ...+++....+...++. +..+.+...++.+.+.+.|+
T Consensus 206 ~tK~l~g~~~~~gG~i~~~~~-~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-------l~~r~~~~~~~a~~la~~L~ 277 (389)
T PRK05968 206 ASKYLGGHSDTVAGVVAGSKE-HIARINAEAYPYLGAKLSPFEAWLLLRGLRT-------LPLRMKAHEASALEIARRLK 277 (389)
T ss_pred ccccccCCCCeEEEEEEECHH-HHHHHHHHHHHhCCCCCChHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHH
Confidence 999998655 67899888554 44433321 1 12 22455555554444443 23344444555677888888
Q ss_pred hc-CCceec-C-----------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-------------
Q 044773 166 KA-GISCLK-S-----------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------------- 219 (289)
Q Consensus 166 ~~-g~~~~~-~-----------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------------- 219 (289)
++ ++.... | ..|-.+.+++... .+..+++..| +..++.+.-|..+..
T Consensus 278 ~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~------~~~~~f~~~L-~~~~~~~s~G~~~slv~p~~~~~~~~~~ 350 (389)
T PRK05968 278 AHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG------IDVRAFADAL-KLFRLGVSWGGHESLVVPAEVVLQQKAQ 350 (389)
T ss_pred hCCCccEEECCCCCCChHHhCCCCceEEEEEECCH------HHHHHHHHhC-CccEEecCCCCCCceeeeCcccccccCC
Confidence 77 453322 2 1122333555421 2234566665 355666655554440
Q ss_pred --------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 --------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 --------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.+|+|++. |+.+.+++.|++++++
T Consensus 351 ~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 351 PNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred HHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 124789999997 6677777777777764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-13 Score=121.72 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|... ... ... ..+.++++.|
T Consensus 130 ~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~----~~~-~~~------------~~gaDivv~S 189 (397)
T PRK05939 130 PNTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSP----WLF-RPK------------DVGASLVINS 189 (397)
T ss_pred CCCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccc----ccc-Ccc------------ccCCEEEEec
Confidence 57999999999999999855 999999999999999999998632 111 100 2256799999
Q ss_pred CccccCCCCceEEEEEec
Q 044773 90 LSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~ 107 (289)
+||.++.+|.++|+++++
T Consensus 190 ~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 190 LSKYIAGHGNALGGAVTD 207 (397)
T ss_pred CeecccCCCCeEEEEEec
Confidence 999998889999998884
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-13 Score=121.62 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=123.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|. ..++++|+++|+++|+++|+|++|....+ ..+ + ..+.++++.|
T Consensus 149 ~~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~----~~~---l----------~~GaDi~v~S 208 (394)
T PRK07050 149 PNTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLA----FKP---F----------EHGVDISVQA 208 (394)
T ss_pred CCCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCcccccc----cCH---H----------HcCCeEEEEE
Confidence 57999999999999965 45599999999999999999999975321 111 1 1244688999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++ ..+.+.|++++.++.+.+.+...... + ..++.....+...++. +..+.++..++...+.+.|++
T Consensus 209 ~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-------l~~Rl~~~~~~a~~la~~L~~ 281 (394)
T PRK07050 209 LTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPS-------LQVRLAAHDRSALEVAEWLKA 281 (394)
T ss_pred CCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999996 34577899998777776655544332 2 2444444333333333 233445555566677777776
Q ss_pred c-CCc-ee-----------------cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------
Q 044773 167 A-GIS-CL-----------------KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------- 219 (289)
Q Consensus 167 ~-g~~-~~-----------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------- 219 (289)
+ .+. +. ...++++ .+.+..... ..+..++...| +..++.+.=|.....
T Consensus 282 ~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~-s~~l~~~~~---~~~~~~~~~~l-~~~~~~~s~G~~~sl~~~~~~~~ 356 (394)
T PRK07050 282 RPEIATVLHPALPDCPGHAFWMRDFTGAGGLF-SVVFDERYS---PAQVDAFVEAL-ELFAIGWSWGGACSLAMPYDVAS 356 (394)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCceEE-EEEECCCCC---HHHHHHHHHcC-CCCeeccccCCccceEeeCcccc
Confidence 5 221 11 1123433 345542211 12233455444 344443322221110
Q ss_pred -------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 -------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 -------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
...+.+|||++. |+.+.+++.|.++++.
T Consensus 357 ~~~~~~~~~~~~iR~svGl---E~~~dl~~dl~~al~~ 391 (394)
T PRK07050 357 MRTAKWPHRGTLVRLYIGL---EDEADLIADLEQALEA 391 (394)
T ss_pred cchhhcCCCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence 123689999997 6677777777777654
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-13 Score=123.40 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=136.4
Q ss_pred HHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++.+....++.+ ++..| .+..+.+.+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..
T Consensus 221 ~~~i~~~~~vAa-vIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~--e~~----------- 286 (459)
T PRK06082 221 EYVIEKEGGIGA-FIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTH--QAY----------- 286 (459)
T ss_pred HHHHhcCCCEEE-EEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHh--Hhh-----------
Confidence 444544335555 45556 555566778899999999999999999999999987666653221 111
Q ss_pred CceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+...-+.+++|.+| .| +++|.++++++ +...... ....+..|++...++.+.|+-.. + ....++++++.+
T Consensus 287 gv~PDiv~~gKgl~-gG~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~---~--~~l~~~~~~~g~ 359 (459)
T PRK06082 287 GIEPDILCIGKGLG-GGLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIE---Q--EGLLEKVKADSQ 359 (459)
T ss_pred CCCCCEEEeccccc-CCCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHH
Confidence 11111335899998 77 59999999654 4333221 11233367777766666655321 1 123445555555
Q ss_pred HHHHHHHhc----CCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-
Q 044773 159 KLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 159 ~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~- 231 (289)
+|.+.|+++ ++......-|.++.+++..... .........+...++ +.||.+.+.. ...+|++++.
T Consensus 360 ~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~------~~~i~~~Ppl~ 432 (459)
T PRK06082 360 FMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVSQ------GNVIQLSPPLI 432 (459)
T ss_pred HHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEecC------CCEEEEeCCCc
Confidence 555555543 3222222234566676653211 111111234555555 6799987631 3579999864
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Q 044773 232 MSEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
+++++++++++++.+++.+..+.
T Consensus 433 it~~eid~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 433 ITREELTQALAILEEAIAKICQD 455 (459)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999887553
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-13 Score=121.05 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=66.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+++ +++|.++|+++++++|+|++|+.... . .+ .+ .
T Consensus 136 le~ai~--~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~---~p-~~------------~ 193 (425)
T PRK06084 136 LEALID--ERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-C---RP-FE------------H 193 (425)
T ss_pred HHHHhc--cCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C---Ch-hh------------c
Confidence 344444 46899999999999999999 89999999999999999999984311 1 11 11 2
Q ss_pred CceEEEecCccccCCCCceEEEEEec
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~ 107 (289)
+.++++.|++|.++.+|.++|.+++.
T Consensus 194 gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 194 GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred CCCEEEECchhcccccccceeEEEEe
Confidence 45599999999998889999988774
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=119.00 Aligned_cols=131 Identities=17% Similarity=0.186 Sum_probs=85.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+...+ ..+ + + .+.++++.|
T Consensus 133 ~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~-~~p---~-~------------~gaDivv~S 192 (380)
T PRK06176 133 PNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYY-QNP---L-L------------LGADIVVHS 192 (380)
T ss_pred cCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCcccccc-CCc---c-c------------cCCCEEEec
Confidence 57999999999999999998 88999999999999999999985322 111 1 1 244588999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccccCC--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSFGL--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|.++.+| .-.|+++++++.+.+.+........ .++.....+...++. +..+.+...++...+.+.|++
T Consensus 193 ~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t-------l~~R~~~~~~~a~~la~~L~~ 265 (380)
T PRK06176 193 GTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT-------LGLRMEAHQKNALCVAEFLEK 265 (380)
T ss_pred CceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHh
Confidence 999997555 4567788766666555544333321 233333333222222 233334444556667777776
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 266 ~ 266 (380)
T PRK06176 266 H 266 (380)
T ss_pred C
Confidence 5
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=123.92 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=132.5
Q ss_pred HHHhhhCC-CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccC
Q 044773 3 QLAQKRHL-KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~~-~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (289)
++.+..++ ++.+|++... +.-.|. ..+++.+++|.++|+++|+++|+||++.+++.+|..+.. ...+.
T Consensus 195 ~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~-------- 266 (428)
T PRK07986 195 ARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA-------- 266 (428)
T ss_pred HHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC--------
Confidence 44554443 4445444432 444565 446789999999999999999999999887555543211 11121
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-------cccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-------SSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
.| +.+++|.++ .| +++|.++++ +.+.+.+... ...+..|++...++.+.|+... + ....
T Consensus 267 --PD----i~t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~---~--~~~~ 333 (428)
T PRK07986 267 --PD----ILCLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLE---S--GDWQ 333 (428)
T ss_pred --CC----EEEechhhh-CCcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH---h--CCHH
Confidence 12 336999998 88 699999995 4555554321 1223367777777666665322 1 1235
Q ss_pred HHHHHHHHHHHHHHHhc-CCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++++++.+++.+.|+++ ..... ...-|.++.+.+..+.. ...+...++ +.||.+.+. + ..+|+
T Consensus 334 ~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~------~~~~~~~l~-~~Gl~~~~~---g----~~i~~ 399 (428)
T PRK07986 334 QQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVN------MAALQRFFV-EQGVWIRPF---G----KLIYL 399 (428)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCccc------HHHHHHHHH-HCCcEEEec---C----CEEEE
Confidence 55666666666666654 21111 11225566666654321 234666665 679999864 1 37999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
.++. ++++++++++++|.+++++
T Consensus 400 ~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 400 MPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8854 7999999999999998864
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-13 Score=118.91 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=154.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
|+++++ +++.+|.+...||-+|.+.| +++|.++|+++++++.+|.++.- |.-+.++..+
T Consensus 134 L~~al~--~~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~------------ 192 (386)
T COG1104 134 LEEALR--PDTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQAV----GKIPIDLEEL------------ 192 (386)
T ss_pred HHHhcC--CCceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc----Cceecccccc------------
Confidence 456666 56899999999999999999 99999999999999999999983 4544444333
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHH------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..++...|-+|..|..| +|+++.++..-...+. .....++.|.+...++..+++.. ...+.....++..
T Consensus 193 ~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a---~~~~~~~~~~~~~ 267 (386)
T COG1104 193 GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA---VEELEEENARLRK 267 (386)
T ss_pred CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45678889999999778 8888875433222211 11223445666666677666653 5556777788888
Q ss_pred HHHHHHHHHHhc--CCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC---------
Q 044773 156 RHRKLVSGLEKA--GISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--------- 221 (289)
Q Consensus 156 ~~~~l~~~l~~~--g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--------- 221 (289)
.+++|.+.|.+. .+.+.+.. -...+.+.++... . +.....++.+||++..|+.|....
T Consensus 268 lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~-g-------E~ll~~L~~~gI~vStGSACsS~~~~pShVL~A 339 (386)
T COG1104 268 LRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE-G-------ESLLLALDLAGIAVSTGSACSSGSLEPSHVLRA 339 (386)
T ss_pred HHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc-H-------HHHHHhccccCeEEeccccccCCCCCccHHHHH
Confidence 899999999875 33333221 1223334444321 1 234444678899999999998531
Q ss_pred --------CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 222 --------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 222 --------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+.+|||++. ++++|++.+++.+.++++....
T Consensus 340 mG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 340 MGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred cCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3689999976 7999999999999999998765
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-13 Score=123.04 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=127.9
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|+ ..| ..-.|... +++.++++.++|+++|+++|+||++.+++.+|..+ . .+.. +...-+.
T Consensus 224 ~vAavI-vEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a-~e~~-----------gv~PDiv 289 (442)
T TIGR03372 224 DVAAII-LEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-A-CEHE-----------GVQPDIL 289 (442)
T ss_pred cEEEEE-EeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch-h-hhhc-----------CCCCCee
Confidence 455544 455 55567655 68899999999999999999999999876655431 1 1111 1112245
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+++|.+| .| +++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+-.. + +...++.++..+++.+.
T Consensus 290 t~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~---~--~~l~~~~~~~G~~l~~~ 362 (442)
T TIGR03372 290 CLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL---E--KNLPAQAAIKGDFLLDG 362 (442)
T ss_pred eehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHH
Confidence 6999998 88 799999995 445444421 12223367777777766665321 1 11233444445555555
Q ss_pred HHhc----C-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 164 LEKA----G-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 164 l~~~----g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
|+++ + .-.....-|.++.+.+.+.. ....+...++ ++||.+.+... +...+||.++. ++++++
T Consensus 363 L~~l~~~~~~~i~~vRG~Gl~~giel~~~~------~~~~i~~~l~-~~Gvl~~~~~~----~~~~lr~~Ppl~~t~~~i 431 (442)
T TIGR03372 363 FQQLAAEYPDLIIEARGKGLLMAIEFRDNE------IGYAFAKELF-QQNILVAGTLN----NAKSIRIEPPLTITIEQC 431 (442)
T ss_pred HHHHHHhCCCceEEEecceEEEEEEeCChH------HHHHHHHHHH-HCCcEEeecCC----CCCEEEEECCcccCHHHH
Confidence 5443 2 11111223567777776431 1235677776 57999875422 23589999954 799999
Q ss_pred HHHHHHHHHHH
Q 044773 238 KLSMQRLKAFV 248 (289)
Q Consensus 238 ~~~l~~l~~~l 248 (289)
+++++++.+++
T Consensus 432 d~~~~~l~~~~ 442 (442)
T TIGR03372 432 ALVIKAAKDAL 442 (442)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-13 Score=121.37 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=67.4
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|... + ...+ + ..+
T Consensus 136 ~~~l~--~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~-~---~~~~---l----------~~g 193 (418)
T TIGR01326 136 EKAID--ENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATP-Y---LCRP---I----------DHG 193 (418)
T ss_pred HHhcC--cCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchh-h---cCCc---h----------hcC
Confidence 44443 46899999999999999998 889999999999999999999732 1 1111 1 225
Q ss_pred ceEEEecCccccCCCCceEEEEEecC
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSND 108 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~ 108 (289)
.++++.|+||.+|.+|+|+||+++++
T Consensus 194 ~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 194 ADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred CeEEEECccccccCCccceEEEEEec
Confidence 67999999999998899999999854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-13 Score=122.92 Aligned_cols=216 Identities=14% Similarity=0.113 Sum_probs=136.4
Q ss_pred hHHHhhhC-CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+ .++-+|++... +.-.|.. .+++.+++|.++|++||+++|+||++.+++.+|..+. .+..
T Consensus 196 l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a--~~~~-------- 265 (429)
T PRK06173 196 LQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA--LEHA-------- 265 (429)
T ss_pred HHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH--HHhc--------
Confidence 34555433 34556555532 5666765 6888999999999999999999999988655554321 1111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+....+.+|+|.++ .| +.+|.+++++ .+.+.+.. ..+.+..+++...++.+.|+.. ++. ...
T Consensus 266 ---gv~PDiv~~gK~l~-gG~~p~~a~~~~~-~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i---~~~--~~~ 335 (429)
T PRK06173 266 ---GVVPDIMCIGKALT-GGYLTLSATITTE-AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL---LES--PWQ 335 (429)
T ss_pred ---CCCCCEEEeehhhh-CCccccceEEecH-HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---HhC--CHH
Confidence 11111335999997 78 5899999854 44444421 1112225666666666665532 111 235
Q ss_pred HHHHHHHHHHHHHHHhc-CCceec--CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLK--SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++++++.++|.+.|++. ++.... ..-|.++.+.+..... ...+...|+ +.||.+.+.. ..+||
T Consensus 336 ~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~------~~~i~~~l~-e~Gi~v~~~g-------~~l~~ 401 (429)
T PRK06173 336 QNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVN------MATLQPRFV-EHGIWVRPFG-------KLVYI 401 (429)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCccc------HHHHHHHHH-HCCeEEEecC-------CEEEE
Confidence 66677777777777754 333221 1235666677754321 134666665 6699997641 37999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
.++. .+++++++++++|.+++.+.
T Consensus 402 ~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 402 MPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHHH
Confidence 9964 79999999999999998764
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=125.68 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=132.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. ++++++++++++||||.+.+ +++|.++|+++|+++++|.+++. |.....+. ..
T Consensus 131 l~~~i~--~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~----g~~~~~~~------------~~ 189 (364)
T PLN02651 131 LAAAIR--PDTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAV----GKIPVDVD------------DL 189 (364)
T ss_pred HHHhcC--CCcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhh----CCcccCcc------------cC
Confidence 344443 46899999999999999999 88999999999999999999984 22222322 33
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHH--H------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA--T------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~--~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+.++++.|.+|.+| | ..+|+++++++...... . .....++.+.....++.++++.. ....++.+++.
T Consensus 190 ~~D~~~~s~hK~~g-p-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~---~~~~~~i~~~~ 264 (364)
T PLN02651 190 GVDLMSISGHKIYG-P-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA---MKEMDYDEKHM 264 (364)
T ss_pred CCCEEEechhhhCC-C-CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHH
Confidence 56799999999644 3 34899988654322110 0 00112334445555666665542 33457777888
Q ss_pred HHHHHHHHHHHHh-c-CCceecCCc-----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC------
Q 044773 154 KQRHRKLVSGLEK-A-GISCLKSNA-----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------ 220 (289)
Q Consensus 154 ~~~~~~l~~~l~~-~-g~~~~~~~~-----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------ 220 (289)
++..+++.+.|.+ + |+++..+.. ...+.+.++. .+ ..++...|. + |.+..|..|...
T Consensus 265 ~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~-~~------~~~~~~~L~-~--i~v~~g~~c~~~~~~~~~ 334 (364)
T PLN02651 265 KALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY-VE------GESLLMGLK-E--VAVSSGSACTSASLEPSY 334 (364)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC-CC------HHHHHHHhC-C--EEEEchhhcCCCCCCcCH
Confidence 8899999999875 3 777776411 1133344442 11 235666663 3 999988877543
Q ss_pred -----------CCCeEEEEEec-CCHHHHH
Q 044773 221 -----------EPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 221 -----------~~~~~Ris~~~-~~~e~l~ 238 (289)
..+.+|+|++. +|++|++
T Consensus 335 ~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 335 VLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 13789999975 7888874
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=114.66 Aligned_cols=221 Identities=16% Similarity=0.229 Sum_probs=162.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.+++++++|.+++.--+||..-+ +++|.++|++|++++|+|.+-+ +++.+. .+ |.+
T Consensus 122 v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~-~v------------d~w 182 (383)
T COG0075 122 VEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPL-KV------------DEW 182 (383)
T ss_pred HHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCccc-ch------------hhc
Confidence 6889999999999999998888999988 9999999999999999999988 445543 22 466
Q ss_pred CceEEEecCccccCC-CCceEEEEEecCHHHHHHHHh---------------c----cccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDLGL-PGFRVGAIYSNDDTVVAAATK---------------M----SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~-~G~r~G~i~~~~~~~~~~~~~---------------~----~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.++++++--|.+++ || +|.+..+++.+...... + ...++++.....++..+|....
T Consensus 183 giDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~- 259 (383)
T COG0075 183 GIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLIL- 259 (383)
T ss_pred CccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH-
Confidence 888999999999974 46 77888865554432211 1 1122244455555666665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
.+=++.+.++++++.+.+++.++++|++....+ ..-...+.+|+..+. .+....+++++|+.+.+|..
T Consensus 260 -~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~------~~~~~~~~~~~g~~i~gg~~-- 330 (383)
T COG0075 260 -EEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDD------KKVRRALLKEYGVEIAGGQG-- 330 (383)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCc------HHHHHHHHHhCCEEeccccc--
Confidence 222688889999999999999999999877622 112334556655443 23444788899999887653
Q ss_pred CCCCCeEEEEE-ecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCF-ANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 219 ~~~~~~~Ris~-~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
......+||+. +..+.+++..++.+|..++.+..-
T Consensus 331 ~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 331 PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 34457899999 667999999999999999988754
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-12 Score=121.10 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=134.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++.. +++++++.+ +.+|...+ +++|.++|+++|+++++|.+|+........... +..
T Consensus 174 L~~~l~~~-~~~lvi~~~--s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~-------------~~~ 234 (452)
T PTZ00094 174 LEELAKAF-RPKLIIAGA--SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPS-------------PFP 234 (452)
T ss_pred HHHHHHHh-CCCEEEEeC--CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCC-------------CCC
Confidence 45566543 567766543 34888888 888889999999999999999854332211110 011
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----ccc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+.+++++|++|+++.|. -|+++++++......... ..+ +..+.....++..+++... ....++.++++.+
T Consensus 235 ~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~~~~~~~~~i~~ 310 (452)
T PTZ00094 235 YADVVTTTTHKSLRGPR--SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SPEWKEYAKQVLK 310 (452)
T ss_pred CCcEEEcCCccCCCCCC--ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--ChhHHHHHHHHHH
Confidence 45688999999883232 388888554322111111 111 1122333333444443221 2235667788999
Q ss_pred HHHHHHHHHHhcCCceecCCc-eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEE-eCCCCCCC--CCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAGISCLKSNA-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI-SPGSSCHC--TEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v-~pg~~f~~--~~~~~~Ris~~~ 231 (289)
+.+++.+.|.+.|+++..+.. ....++.+..... + .+....+++++||.+ .++.++.. ..++.+|+++..
T Consensus 311 l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~~-----~-~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~ 384 (452)
T PTZ00094 311 NAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGI-----T-GSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPA 384 (452)
T ss_pred HHHHHHHHHHhCCcEEecCCCCCceEeecCCcCCC-----C-HHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHH
Confidence 999999999887887764321 2233444443211 1 124444557889999 56655542 234789999954
Q ss_pred -CC----HHHHHHHHHHHHHHHHHH
Q 044773 232 -MS----EDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 -~~----~e~l~~~l~~l~~~l~~~ 251 (289)
++ ++|++.+++.|.+++...
T Consensus 385 ~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 385 LTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 34 899999999999998864
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=121.51 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=88.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|.+. ++++|+++|+++|+++|+|++|....+ +. + . ..+.++++.|
T Consensus 216 ~~TklV~lesPsNPtG~i~---Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~~---p-l------------~~gaDivv~S 275 (464)
T PLN02509 216 PQTKLVWLESPTNPRQQIS---DIRKIAEMAHAQGALVLVDNSIMSPVL-SR---P-L------------ELGADIVMHS 275 (464)
T ss_pred cCCeEEEEECCCCCCCCHH---HHHHHHHHHHHcCCEEEEECCcccccc-CC---h-h------------hcCCcEEEec
Confidence 5789999999999999974 499999999999999999999864322 11 1 1 1244688999
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
++|+++.+| .-.|+++++++.+.+.+....... .+.+....++.++.. .+.+..+.++..++.+.+.+.|+++
T Consensus 276 ~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~-g~~l~p~~A~l~lr~----L~tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 276 ATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE-GSGLAPFDCWLCLRG----IKTMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred CcccccCCCccceeEEEeccHHHHHHHHHHHHhc-CCCcCHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999997543 446888876555544433322221 122222333333333 2235666677778888888888876
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-12 Score=121.17 Aligned_cols=224 Identities=10% Similarity=0.014 Sum_probs=136.6
Q ss_pred hHHHhhh-C-CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKR-H-LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~-~-~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++.. . .++-+ ++..| +.-.|.. .+++.+++|.++|++||+++|.||++.+++.+|..+.. +.
T Consensus 209 l~~~~~~~~~~~iAA-vi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~--~~-------- 277 (461)
T PRK07482 209 LEELILAEGPDTIAA-FIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGS--DH-------- 277 (461)
T ss_pred HHHHHHhcCCCcEEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhH--Hh--------
Confidence 3455532 2 24555 45556 5555666 57889999999999999999999999998777664322 11
Q ss_pred CCCCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
.+...-+-+++|.++ .|. ++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+...- .
T Consensus 278 ---~gv~PDiv~~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~-----~ 347 (461)
T PRK07482 278 ---YGIEPDLITVAKGLT-SAYAPLSGSIVGE-KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER-----E 347 (461)
T ss_pred ---cCCCCCEEEEccccc-cCccccceeeecH-HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh-----C
Confidence 122233556899998 784 999999954 44444431 112333788888877777663221 1
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCceecCCceEEEEEecCcccc-CCChh----hHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLLS-SNTFE----AEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g~~~~i~~~~~~~-~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...++.++..+++.+.|+ ++++......-|.+..+.+..... ...+. -...+...++ +.||.+.++.
T Consensus 348 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~~--- 423 (461)
T PRK07482 348 NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAAL-ERGVIARAMP--- 423 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHH-HCCcEEecCC---
Confidence 122333444444555554 333322222335666677753211 11000 1234666666 6799986531
Q ss_pred CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
....+|+.++. +++++++++++++.+++++..
T Consensus 424 --~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 456 (461)
T PRK07482 424 --HGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL 456 (461)
T ss_pred --CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12478998753 799999999999999998753
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=122.56 Aligned_cols=213 Identities=10% Similarity=0.073 Sum_probs=133.2
Q ss_pred ccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 12 VKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 12 ~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+.+ ++..| ..-.|.+ .+.+.+++|.++|++||+++|+||++.+++..|..+. .+. .+...-+.+
T Consensus 261 iAA-vI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a--~e~-----------~gv~PDivt 326 (504)
T PLN02760 261 IAA-FIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFG--CDK-----------YNIKPDLVS 326 (504)
T ss_pred eEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhH--HHh-----------cCCCCcEEE
Confidence 444 55556 5555655 4688999999999999999999999998877666432 121 122334788
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
|+|.+| .| +++|.++++ +.+.+.+.. ....+..|++...++.+.|+... + +...++.+++.++
T Consensus 327 lgK~lg-gG~~PigAv~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~---~--~~l~~~~~~~g~~ 399 (504)
T PLN02760 327 LAKALS-SAYMPIGAVLVS-PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYK---E--RNIPEHVNKIAPR 399 (504)
T ss_pred eccccc-CCccccceEeec-HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHH
Confidence 999998 66 599999995 455555432 11223367777777776665322 1 1334455555555
Q ss_pred HHHHHHhc---CCceecCCceEEEEEecCccccC-CCh----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 160 LVSGLEKA---GISCLKSNAGLFCWVDMRHLLSS-NTF----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 160 l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
|.+.|+++ ++......-|.++.+.+...... ..+ .-...+...++ ++||.+.+.. ..+||++..
T Consensus 400 l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~lrl~Ppl 471 (504)
T PLN02760 400 FQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECK-KRGMLVRVAG-------DNIMMSPPL 471 (504)
T ss_pred HHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHH-hCCcEEEecC-------CEEEEECCC
Confidence 55555543 32211122245556666432111 100 01234556655 6799987631 368999853
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++++++++++++.+++++...
T Consensus 472 ~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 472 IITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999887643
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-13 Score=122.34 Aligned_cols=212 Identities=18% Similarity=0.170 Sum_probs=131.7
Q ss_pred HHHhhhCC-CccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhcccccc
Q 044773 3 QLAQKRHL-KVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCEN 77 (289)
Q Consensus 3 ~~~~~~~~-~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (289)
++++.+++ ++.+ ++..| ++-.|. .++.+++++|.++|+++++++|+||+|.+++.+|..+.. ...+
T Consensus 198 ~~~l~~~~~~vaa-vivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v-------- 268 (427)
T TIGR00508 198 AKLMELHSDEIAA-VILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV-------- 268 (427)
T ss_pred HHHHHhcCCcEEE-EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC--------
Confidence 44554443 4445 55555 554555 457899999999999999999999999887665543222 1122
Q ss_pred CCCCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
..+ +.+++|+++ .|+ .++.++++ +.+.+.+.. ....+..|++...++.+.|+-.. + ...
T Consensus 269 --~pD----i~~~gK~l~-gG~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~---~--~~~ 335 (427)
T TIGR00508 269 --VPD----ILCVGKALT-GGYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILL---E--GEW 335 (427)
T ss_pred --CCC----EEEechhhh-cCcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH---h--CCH
Confidence 112 334899997 784 78888884 455555542 11222357777777766665321 1 123
Q ss_pred HHHHHHHHHHHHHHHHhcCCc-eecC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKAGIS-CLKS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~-~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.++++++.++|.+.|++++.. .... .-|.++.+.+..... ...+...++ +.||.+.+.. ..+|
T Consensus 336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~------~~~~~~~l~-~~Gv~~~~~~-------~~l~ 401 (427)
T TIGR00508 336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVN------VEELQKKFV-EQGVWIRPFG-------KLIY 401 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccC------HHHHHHHHH-HCCeEEEecC-------CEEE
Confidence 456666667777777665311 1111 114555566643211 235666666 6699997532 3689
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+++.. +++++++++++++.+++.+
T Consensus 402 ~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 402 VMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhc
Confidence 99863 6999999999999998854
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=117.95 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.. + ...++ ..+-++++.|
T Consensus 145 ~~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~p-~---~~~Pl-------------~~GaDivv~S 204 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWASP-I---NSRPF-------------EMGVDISIQA 204 (394)
T ss_pred cCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCcccc-c---cCCcc-------------ccCceEEEEe
Confidence 57999999999999987755 999999999999999999999842 1 11111 2256799999
Q ss_pred Ccccc-CCCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDL-GLPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.+|++ |.+++-.|+++.+ +.+.+.+..... .+ ..++.....+.+-++. +.-+.++..++...+.+.|++
T Consensus 205 ~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na~~la~~L~~ 276 (394)
T PRK09028 205 ATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-------LGVRLAQHEKNALKVANWLAT 276 (394)
T ss_pred CCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHhc
Confidence 99999 4456888977664 444443332221 22 2444544444444444 455566677788888889988
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
+
T Consensus 277 ~ 277 (394)
T PRK09028 277 R 277 (394)
T ss_pred C
Confidence 7
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=119.68 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=133.0
Q ss_pred HHHhhhC--CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH--LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++... .++.+ ++..| ....|.. .+.+.+++|.++|++||+++|+||++.+++..|..+.. +..
T Consensus 205 e~~l~~~~~~~~aa-vivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~--~~~-------- 273 (442)
T PRK13360 205 ERLVTLHDASTIAA-VIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAA--QYF-------- 273 (442)
T ss_pred HHHHHhcCCCcEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhh--hhc--------
Confidence 4555432 23444 55556 5556765 57889999999999999999999999887666554211 111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+...-+.+|+|.++ .| +++|.+++++ .+.+.+.. ....+..+++...++.+.|+.. .+ ..
T Consensus 274 ---gv~PDivt~gK~l~-gG~~P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l---~~--~~ 343 (442)
T PRK13360 274 ---GVTPDLLTCAKGLT-NGAIPMGAVFVSS-EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY---ER--EG 343 (442)
T ss_pred ---CCCCceeeeeeccc-cCccceEEEEEcH-HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--CC
Confidence 11122458999998 66 8999999954 44444321 1122336777777766666532 11 13
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCcee-c-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 149 NKKRLKQRHRKLVSGLEKA-GISCL-K-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~-g~~~~-~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
..++.+++.+++.+.|+++ ..... . ..-|++.-+.+....... .....++...++ +.||.+.++ ...+
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~-~~~~~~~~~~l~-~~Gvl~~~~-------~~~l 414 (442)
T PRK13360 344 LLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKP-GKRAYEVFLKCF-EKGLMIRYT-------GDIL 414 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCc-chhHHHHHHHHH-HCCcEEEec-------CCEE
Confidence 4456666666677777654 12111 1 112334344443211111 012235666665 669998753 1469
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
||++.. ++++++++++++|.+++++
T Consensus 415 r~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 415 ALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 999854 7999999999999998865
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=120.56 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=136.1
Q ss_pred HHHhhhC--CCccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH--LKVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++.+... .++-+|++...+.-.|. +.+.+.+++|.++|++||+++|.||++.+++.+|..+.. +.
T Consensus 205 ~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~--~~---------- 272 (459)
T PRK05965 205 RAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFAC--EA---------- 272 (459)
T ss_pred HHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhH--hh----------
Confidence 4444432 34556555533655666 457789999999999999999999999998777654321 11
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
.+...-+.+++|.+| .| +++|.++++++ +.+.+.. ..+.+..|++...++.+.|+-.+- +..
T Consensus 273 -~gv~PDiv~~gKgl~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~-----~~l 344 (459)
T PRK05965 273 -EGVVPDLMTVAKGLT-SGYVPMGAVLMSDH-VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE-----GGL 344 (459)
T ss_pred -cCCCCCeEEechhhc-cCCcceeEEEEcHH-HHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh-----ccH
Confidence 123344667899998 88 59999999654 4444321 112333778887776666653221 122
Q ss_pred HHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 150 KKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
.++.++..++|.+.|+++ ++......-|+++.+++..... ... ......+...++ ++||.+.+. +
T Consensus 345 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gll~~~~------g 417 (459)
T PRK05965 345 LANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAY-ANGLVFRAF------G 417 (459)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHH-hCCeEEEec------C
Confidence 334445555555555543 2211122235556666643211 000 011234555555 679998753 2
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
...+|+.++. +++++++++++++.+++++.
T Consensus 418 ~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 418 DGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred CcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3578999854 79999999999999999875
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=121.07 Aligned_cols=213 Identities=15% Similarity=0.031 Sum_probs=131.4
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|.+ .+.+.++++.++|+++|+++|.||++.+++.+|..+.. + ..+...-+.
T Consensus 231 ~iAA-vI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~--e-----------~~gv~PDiv 296 (464)
T PRK06938 231 LPAA-VILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAF--E-----------HAGIIPDVV 296 (464)
T ss_pred ceEE-EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHH--H-----------hcCCCCCEE
Confidence 3555 45556 5444664 56899999999999999999999999998666643211 1 123334466
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|.++++++ + +.+.. ..+.+..|++...++.+.|+...- + ...++.++..+++.+.|++
T Consensus 297 ~~gKglg-gG~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~-~----~l~~~~~~~G~~l~~~L~~ 368 (464)
T PRK06938 297 VLSKAIG-GSLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE-H----RLAEHAAAMGERLREHLRQ 368 (464)
T ss_pred Eeecccc-CCCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH-h----HHHHHHHHHHHHHHHHHHH
Confidence 7899998 8899999999654 3 33321 122334788887777777653321 1 2223333444444444443
Q ss_pred ----cCCceecCCceEEEEEecCccccC------C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 167 ----AGISCLKSNAGLFCWVDMRHLLSS------N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 167 ----~g~~~~~~~~g~~~~i~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+++......-|+++.+.+...... . ...-...+...++ ++||.+.++..+ ...+|+.++. ++
T Consensus 369 l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g~~----~~~l~~~Ppl~it 443 (464)
T PRK06938 369 LQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELGGRH----GSVVRFLPPLIIT 443 (464)
T ss_pred HHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeecCCC----CCEEEEECCCccC
Confidence 333222233356666776432110 0 0011234566665 679999875322 2579998754 79
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
+++++.+++++.+++.+
T Consensus 444 ~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 444 AEQIDEVAEIFAEAVAA 460 (464)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998875
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=118.18 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=121.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+.... .. + . ..+.+++++|
T Consensus 134 ~~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~-~~---p-l------------~~gaDivv~S 193 (377)
T TIGR01324 134 PNTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLL-FK---P-L------------EHGVDISIQA 193 (377)
T ss_pred CCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCccccc-cC---c-c------------ccCceEEEec
Confidence 57999999999999987765 99999999999999999999985322 11 1 1 2356699999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
++|+++ .++.-.|+++++++...........++. .++.. +..++.. .+.+..+.++..++...+.+.|+++
T Consensus 194 ~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~---a~~~~rg----l~tl~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 194 GTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADD---AYTTLRG----LRTLGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred CceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHH---HHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999996 3457789988865443333322222221 33333 3333332 1234455666777777788888876
Q ss_pred -CC-ceecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC---------
Q 044773 168 -GI-SCLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--------- 219 (289)
Q Consensus 168 -g~-~~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------- 219 (289)
.+ ++..| .+|++. +++.... .....++...| +-.++.+.-|.....
T Consensus 267 p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s-~~l~~~~----~~~~~~~~~~l-~~~~~~~slG~~~sl~~~~~~~~~ 340 (377)
T TIGR01324 267 PEVARVLHPALPSCPGHEFWKRDFSGSSGLFS-FVLQRLT----QKQVHAFLDHL-QLFGLGYSWGGYESLALCNQPELG 340 (377)
T ss_pred CCcCEEECCCCCCCccHHHHHHhccCCCceEE-EEECCCC----HHHHHHHHHhC-CcceEeccCCCccceeecCCCCCC
Confidence 22 12211 244443 5554211 12223444443 233443222221110
Q ss_pred --------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 220 --------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 --------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++.+|||++. |+.+++++.|.++++
T Consensus 341 ~~~~~~~~~~~~liR~svGl---E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 341 HRPNIKRNLEGPLIRVHIGL---ENVDDLKADLKAGFE 375 (377)
T ss_pred HHHHHhccCCCCEEEEEeCC---CCHHHHHHHHHHHHh
Confidence 122579999997 667777777777765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-12 Score=119.01 Aligned_cols=215 Identities=12% Similarity=0.096 Sum_probs=133.7
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| +.-.|.. .+++.+++|.++|++||+++|+||++.+++..|..+. .+.. +...-+.
T Consensus 218 ~iAa-vIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~--~~~~-----------~v~PDi~ 283 (460)
T PRK06105 218 TIAA-FIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFG--CETF-----------GIKPDIL 283 (460)
T ss_pred ceEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhh--HHhc-----------CCCCCee
Confidence 4555 55556 5555665 5888999999999999999999999998876665432 1111 2223366
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHhc---------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATKM---------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~---------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+++|.+| .| +++|.++++ +.+.+.+... ...+..|++...++.+.|+...- .+..++.++..+
T Consensus 284 ~~gK~lg-gG~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~-----~~l~~~v~~~g~ 356 (460)
T PRK06105 284 VMSKQLS-SSYQPLSAVLMN-EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE-----RDLVGNAAERGA 356 (460)
T ss_pred eeecccc-cCcccceEEEEc-HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 8999998 66 699999995 4455544321 12233677777776666653221 123344455555
Q ss_pred HHHHHHHhc---CCceecCCceEEEEEecCcccc-CCCh----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 159 KLVSGLEKA---GISCLKSNAGLFCWVDMRHLLS-SNTF----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 159 ~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~-~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+|.+.|+++ ++......-|.+..+++..... ...+ .-...+...++ ++||.+.|. + ..+||+++
T Consensus 357 ~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~-~~Gvl~~~~---g----~~i~l~Pp 428 (460)
T PRK06105 357 RLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH-EHGVISRAM---G----DTLAFCPP 428 (460)
T ss_pred HHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHH-HCCeEEEec---C----CEEEEECC
Confidence 555555443 2222222225565566642211 0000 11234555555 779999863 1 37999986
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHHHh
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
. .++++++++++++.+++++....
T Consensus 429 l~it~~eid~~~~~l~~~l~~~~~~ 453 (460)
T PRK06105 429 LIITAAQVDEMVDRFGRALDDVAAW 453 (460)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 69999999999999999887653
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-12 Score=108.53 Aligned_cols=217 Identities=17% Similarity=0.260 Sum_probs=154.7
Q ss_pred hhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCc--cChhhhhhccccccCCCCCc
Q 044773 7 KRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF--VSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 7 ~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~ 83 (289)
+..|.-..++++.| |||||+-.++|++++|++..+..+.+.+.|-+|+++.-+.... ..+...+. ....
T Consensus 173 ~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~--------~g~e 244 (410)
T KOG1412|consen 173 ESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE--------QGFE 244 (410)
T ss_pred hhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh--------cCCe
Confidence 34444445577777 9999999999999999999999999999999999975433222 22233332 3355
Q ss_pred eEEEecCccccCCCCceEEEEE--ecCHHHHHHHH------hccccCCCChHHHHHHHHHhCCchHHHHH---HHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIY--SNDDTVVAAAT------KMSSFGLVSSQTQYLLSALLSDKKFAQNY---ISENKKR 152 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~--~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~ 152 (289)
.++..||+|-||+.+-|+|-+. ..+...+..+. ....++.++..+..+++..|..+++-++| ++.+..+
T Consensus 245 ~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssR 324 (410)
T KOG1412|consen 245 LFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSR 324 (410)
T ss_pred EEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999874 44444433222 12334446667888899999988763444 4556678
Q ss_pred HHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 153 LKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
+++.+..|++.|..++ |.-...+.|+|.+-.+.. ...+.|.+.+.|++.+- | ||+
T Consensus 325 I~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp-----------~qV~~li~~h~vyLl~~--------G--RIn 383 (410)
T KOG1412|consen 325 IKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP-----------AQVDHLIENHKVYLLSD--------G--RIN 383 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-----------HHHHHHHHhceEEEecC--------C--cEe
Confidence 8888888888888873 444567788888765442 36777888999998863 2 899
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHH
Q 044773 229 FANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 229 ~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+.++...++-...++.+.++..+
T Consensus 384 isGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 384 ISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred eeccccccHHHHHHHHHHHHHhhc
Confidence 976677777777777766665543
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=120.75 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=130.9
Q ss_pred HHHhhhC--CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH--LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++... .++.+ ++..| ..-.|.+ .+.+.+++|.++|+++|+++|+||++.+++..|..+. .+..
T Consensus 204 e~~l~~~~~~~iAa-viiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a--~~~~-------- 272 (451)
T PRK06062 204 ERVIELEGPSTIAA-ILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA--IEHF-------- 272 (451)
T ss_pred HHHHHhcCCCceEE-EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH--HHhc--------
Confidence 4455432 24555 44456 5555666 4788999999999999999999999998755554321 1111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.+|+|.+| .| +++|.+++++ .+.+.+... ...+..|++...++.+.|+...- + ...++.
T Consensus 273 ---gv~PDi~t~gK~lg-gG~~Pigav~~~~-~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~----~l~~~~ 342 (451)
T PRK06062 273 ---GVVPDLITFAKGVN-SGYVPLGGVAISE-AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE-E----GIVENA 342 (451)
T ss_pred ---CCCCCeeeechhhh-cCCcCcEEEEEcH-HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-c----CHHHHH
Confidence 22223668999998 78 4999999965 555555321 11333677777776666653221 1 123333
Q ss_pred HHHH-HHHHHHHHhc----CCceecCCceEEEEEecCcccc-CCCh-------hhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 154 KQRH-RKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS-SNTF-------EAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 154 ~~~~-~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~~-------~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
++.. +++.+.|+++ +.......-|++..+.+..... ...+ .....+...++ +.||.+.+.
T Consensus 343 ~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~------ 415 (451)
T PRK06062 343 ARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-ERGLLPFVN------ 415 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-HCCcEEeec------
Confidence 3333 2344444432 3211112224555566542111 0000 01234666665 679997652
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+.+||+++. +++++++++++++.+++++..
T Consensus 416 -~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 416 -GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred -CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 2478998853 799999999999999998754
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-12 Score=118.40 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=129.6
Q ss_pred CccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++-+|++...+.-.|.. .+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +. .+...-+.+
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~--~~-----------~gv~PDiv~ 279 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGS--RG-----------WGVKPDIMC 279 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHh--hh-----------cCCCCCEEE
Confidence 45565554335555664 57889999999999999999999999988666653221 11 122233566
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
++|.+| .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+...- ....++.++..++
T Consensus 280 ~gKgl~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~-----~~l~~~~~~~g~~ 352 (449)
T PRK07481 280 LAKGIT-SGYVPLGATMVNA-RIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR-----EDLPANAAKRGAY 352 (449)
T ss_pred Eeeccc-CCCcCceEEEEcH-HHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 899998 78 6999999954 45554432 112333678877777666653221 1223334444444
Q ss_pred HHHHHHhc----CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 160 LVSGLEKA----GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 160 l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+.+.|+++ ++......-|.++.+.+..... ... ......+...++ +.||.+.+.. ..+||+++
T Consensus 353 l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g-------~~i~l~Pp 424 (449)
T PRK07481 353 LLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR-ENGVLVRPSG-------TKIILSPP 424 (449)
T ss_pred HHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH-hCCeEEEecC-------CEEEEECC
Confidence 55555443 3222222234566666643211 100 111234555555 6799998642 25899986
Q ss_pred c-CCHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
. +++++++++++++.+++++.
T Consensus 425 l~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 425 LVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 4 69999999999999998754
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-12 Score=118.62 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=134.0
Q ss_pred HHHhhhC--CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH--LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++... .++.+|++.....-.|... +.+.+++|.++|+++|+++|+||++.+++.+|..+. .+..
T Consensus 208 ~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~--~~~~--------- 276 (445)
T PRK09221 208 ERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFA--AERF--------- 276 (445)
T ss_pred HHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhH--HHhc---------
Confidence 4445433 2455545443366667754 677999999999999999999999998766555321 1111
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
+...-+.+++|.++ .| +++|.+++++ .+.+.+.. ....+..+++...++.+.|+... + ...
T Consensus 277 --gv~PDi~~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~---~--~~l 347 (445)
T PRK09221 277 --GVTPDIITFAKGLT-NGAIPMGAVIASD-EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYR---E--EDL 347 (445)
T ss_pred --CCCCCEEEeccccc-cCcccceeeEEcH-HHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHH---h--ccH
Confidence 11112568999998 66 7899999954 44444321 11123367777666655554321 1 134
Q ss_pred HHHHHHHHHHHHHHHHhc-CCce-e-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKA-GISC-L-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~-g~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.++.++..+++.+.|+++ +... . ...-|....+.+........ ....++...++ +.||.+.++ ...+|
T Consensus 348 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~-~~~~~~~~~~~-~~Gv~~~~~-------~~~lr 418 (445)
T PRK09221 348 FERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPG-ARGYEAFMKCF-EKGLLVRYT-------GDTIA 418 (445)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEeccccccc-chHHHHHHHHH-HCCeEEeec-------CCEEE
Confidence 556677777777777664 2211 1 11124455555543211100 11234666665 669998753 24799
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
|++.. ++++++++++++|.+++++.
T Consensus 419 ~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 419 LSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHhh
Confidence 99854 79999999999999998653
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-12 Score=118.67 Aligned_cols=221 Identities=15% Similarity=0.086 Sum_probs=132.7
Q ss_pred HHHhhhC-CCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH-LKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++..+ .++-+ ++..| ++-.|. ..+++.++++.++|+++|+++|.||++.+++.+|..+.. +.
T Consensus 227 ~~~~~~~~~~iAA-vI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~--e~--------- 294 (472)
T PRK08742 227 QALFEQSPGEICA-LILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFAC--EQ--------- 294 (472)
T ss_pred HHHHHhCCCceEE-EEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHH--Hh---------
Confidence 4455433 34555 44555 555576 567889999999999999999999999998776654322 11
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchH--HHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKF--AQNYIS 147 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~ 147 (289)
.+...-+.+++|.+| .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+-..- +.+..+
T Consensus 295 --~gv~PDiv~~gKgl~-gG~~Plaav~~~~-ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~ 370 (472)
T PRK08742 295 --AGVMPDLLCLSKGLT-GGFLPLSAVLATQ-QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQ 370 (472)
T ss_pred --cCCCCCEEEEccccc-CCCCCcceeeccH-HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 123344666899998 88 5999999954 44444321 112333677777776666653221 022222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC-CChh----hHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS-NTFE----AEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
++-+.++ .+.+.+.++++......-|+++.+.+...... ..+. -...+...++ +.||.+.+. +
T Consensus 371 ~~g~~l~----~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~---g---- 438 (472)
T PRK08742 371 PTAARMT----QLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAAL-ARGVVLRPL---G---- 438 (472)
T ss_pred HHHHHHH----HHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHH-HCCeEEEec---C----
Confidence 2222232 23333333332112222355666766432111 1100 1134555555 679999863 1
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
+.+||.++. .+++++++++++|.+++++.
T Consensus 439 ~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 439 DVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999964 79999999999999999864
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-12 Score=116.90 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=136.5
Q ss_pred HHHhhhC--CCccEEEEeCC-C-CCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 3 QLAQKRH--LKVKGVLVTNP-S-NPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 3 ~~~~~~~--~~~~~i~l~~p-~-NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++..+ .++-+|++. | . |-.|. ..+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..
T Consensus 189 e~~i~~~~~~~iAAvi~E-Pi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~--~~~------- 258 (447)
T PRK06917 189 ETAIERIGAEHIAAFIAE-PIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAM--EHW------- 258 (447)
T ss_pred HHHHHhcCCCceEEEEEe-ccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhH--Hhc-------
Confidence 4455443 245564544 6 4 34444 567889999999999999999999999987555543211 111
Q ss_pred CCCCCceEEEecCccccCCCCc-eEEEEEecCHHHHHHHHhc------cccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGF-RVGAIYSNDDTVVAAATKM------SSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+...-+.+++|.+| .|. ++|.+++++ .+.+.+... .+.+..|++...++.+.|+...- ....
T Consensus 259 ----gv~PDi~~~gK~l~-~G~~Pi~a~~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-----~~l~ 327 (447)
T PRK06917 259 ----GVEPDIMTLGKGLG-AGYTPIAATVVSD-RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK-----HNLP 327 (447)
T ss_pred ----CCCCCEEEeeehhc-cCCcceEEEEEcH-HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH-----CCHH
Confidence 11122567899998 885 999999954 555544321 12233677777776666653211 1233
Q ss_pred HHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCC-CCCC
Q 044773 151 KRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSS-CHCT 220 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~-f~~~ 220 (289)
++++++.++|.+.|+++ ++......-|.++.+.+..... ... ..-...+...++ ++||.+.|+.. ....
T Consensus 328 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~~~g~ 406 (447)
T PRK06917 328 EKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAA-KNGLLLYPAVAGQDGK 406 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHH-hCCcEEEecccccCCC
Confidence 44555555555555543 3222222234555566532111 000 011234666665 67999987421 1111
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
....+|++++. +++++++.+++++.+++++..
T Consensus 407 ~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 439 (447)
T PRK06917 407 EGDAVIIAPPMTITYSELDELLSIFAKSVEEMM 439 (447)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 23579999863 699999999999999998763
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=118.48 Aligned_cols=220 Identities=13% Similarity=0.112 Sum_probs=127.8
Q ss_pred hHHHhhhCC-CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHL-KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..+. ++.+ ++..| ..-.|... +.+.+++|.++|++||+++|+||++.++ ..|.. ...+..
T Consensus 191 l~~~l~~~~~~~aa-vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~--ga~~~~-------- 258 (433)
T PRK00615 191 FQTVMNSLGHRVAG-VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG--GAAAIY-------- 258 (433)
T ss_pred HHHHHHhcCCceEE-EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh--HHHHhc--------
Confidence 455565443 3444 55556 55556655 5789999999999999999999999876 44432 111211
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.+++|.+| .|+++|+++++ +.+.+.+... .+.+..+++...++.+.|+-.. + ....+++
T Consensus 259 ---gv~PDi~~~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~---~--~~~~~~~ 328 (433)
T PRK00615 259 ---HVKPDITVYGKILG-GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR---E--QGFYTQL 328 (433)
T ss_pred ---CCCCCeEEEccccc-CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh---c--ccHHHHH
Confidence 11122346899998 78999999995 4455544321 1122256666666655554321 1 1123344
Q ss_pred HHHHHHH----HHHHHhcCCceecCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 154 KQRHRKL----VSGLEKAGISCLKSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 154 ~~~~~~l----~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
+++.+++ .+.+.+.|+.+.....|.+..+.+...... ........+...|+ ++||.+.|.....
T Consensus 329 ~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~---- 403 (433)
T PRK00615 329 STLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAF-SKGVYLSPSPFEA---- 403 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHH-HCCeeecCccccc----
Confidence 4444444 444444454432222355555666532110 01112235777776 5699998754211
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+ =++.. +++++++++++++.+++++.
T Consensus 404 -~-~ls~~-ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 404 -S-FLSSA-HSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred -c-ceecC-CCHHHHHHHHHHHHHHHHHH
Confidence 1 24555 69999999999999998864
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-12 Score=127.62 Aligned_cols=215 Identities=14% Similarity=0.174 Sum_probs=132.9
Q ss_pred CccEEEEeCC--CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP--SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p--~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| ++-.....+.+.+++|.++|++||+++|+||++.+++..|..+... +.. +...-|.
T Consensus 744 ~iAa-vI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~-e~~-----------gv~PDiv 810 (972)
T PRK06149 744 GLAG-FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGF-EQQ-----------GVVPDII 810 (972)
T ss_pred ceEE-EEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhh-hhc-----------CCCCCEE
Confidence 4445 55556 4444466788899999999999999999999999887766543322 111 2222345
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+++|.+| .|+++|+++++ +.+.+.+.. ..+....|++...++.+.|+-..- +...+..++..++|.+.|+
T Consensus 811 t~gK~lg-~G~Pl~av~~~-~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~-----e~l~~~~~~~G~~l~~~L~ 883 (972)
T PRK06149 811 TMAKGMG-NGHPLGAVITR-REIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE-----EKLQENARRVGDHLKARLE 883 (972)
T ss_pred Eeccccc-CCeeeEEEEEc-HHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHH
Confidence 8999998 88999999995 455555432 112223677777777666653221 1223334444444444444
Q ss_pred hc----CCceecCCceEEEEEecCccc-c-CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHH
Q 044773 166 KA----GISCLKSNAGLFCWVDMRHLL-S-SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~~~-~-~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~ 238 (289)
++ ++......-|+++.+++.... . .........+...++ +.||.+.|.... .+.+||.+.. +++++++
T Consensus 884 ~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~-~~Gvl~~~~g~~----~~vl~~~Ppl~it~~~id 958 (972)
T PRK06149 884 ALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLL-ELGVIMQPTGDH----LNILKIKPPLCLDRESAD 958 (972)
T ss_pred HHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHH-hCCeEEeecCCC----CCEEEEECCCcCCHHHHH
Confidence 33 332222223566667764211 1 111122345666766 569999875221 3579998853 7999999
Q ss_pred HHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDS 250 (289)
Q Consensus 239 ~~l~~l~~~l~~ 250 (289)
.+++++.+++.+
T Consensus 959 ~~~~~l~~~l~~ 970 (972)
T PRK06149 959 FFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-12 Score=117.01 Aligned_cols=219 Identities=17% Similarity=0.120 Sum_probs=134.9
Q ss_pred HHHhhhC-CCccEEEEeC-CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTN-PSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~-p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++..+ .++-+|++.. .+.-.|. ..+.+.+++|.++|++||+++|.||++.+++.+|..+.. +.
T Consensus 212 ~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~--~~---------- 279 (453)
T PRK06943 212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFAC--EQ---------- 279 (453)
T ss_pred HHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHH--Hh----------
Confidence 4455433 3555655554 2555566 468889999999999999999999999998766654321 11
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
.+...-+.+++|.++ .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+-..- + ...
T Consensus 280 -~gv~PDivt~gKgl~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~----~l~ 351 (453)
T PRK06943 280 -AGVWPDFLCLSKGIS-GGYLPLSLVLSRD-AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE-D----DVL 351 (453)
T ss_pred -CCCCCCeEeeehhhc-cCcccceEEEEcH-HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh-c----CHH
Confidence 122233666799998 88 6999999965 44444431 122333678887777776654321 1 122
Q ss_pred HHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 151 KRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
++.++..+++.+.|+++ ++.-.... |+++.+++...... ......++...++ ++||.+.+.. ..+|
T Consensus 352 ~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gvel~~~~~~-~~~~~~~i~~~~~-~~Gll~~~~g-------~~l~ 421 (453)
T PRK06943 352 ARNARKSARLRAALAPLAAHPQVRHLRQR-GTIFAFDVALDGDA-ARTFSRRFFEAAL-ERELLLRPIG-------TTVY 421 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEecc-ccEEEEEEccCCCc-chHHHHHHHHHHH-HCCcEEEecC-------CEEE
Confidence 33444444455555443 22212223 45666666522111 0011234666665 6799987631 3589
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
|+++. +++++++++++++.+++.+.
T Consensus 422 ~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 422 LMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99753 79999999999999999875
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-12 Score=125.46 Aligned_cols=216 Identities=11% Similarity=0.041 Sum_probs=134.6
Q ss_pred CccEEEEeCC-C-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-S-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| . +-.....+++.++++.++|+++|+++|.||++.+++..|....... ..+.+.-+.
T Consensus 784 ~iAA-vI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e------------~~gv~PDiv 850 (1013)
T PRK06148 784 GPAF-FIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFE------------TQGVVPDIV 850 (1013)
T ss_pred ceEE-EEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhh------------hcCCCccee
Confidence 4555 55556 4 4333456888999999999999999999999999876665322211 113334467
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+++|.+| .|+++|.++++ +.+.+.+.. ..+.+..|+++..+..+.|+-..- +...++.++..++|.+.|+
T Consensus 851 t~gK~lg-gG~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~-----e~l~~~~~~~G~~l~~~L~ 923 (1013)
T PRK06148 851 TMGKPIG-NGHPMGAVVTT-REIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED-----EDLQRNALEIGNYLLAGLR 923 (1013)
T ss_pred eeccccc-CCcceEEEEEc-HHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHH
Confidence 8899998 89999999995 555554432 122333778887777666653211 1223334444444444444
Q ss_pred hc----CCceecCCceEEEEEecCcccc-C-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHH
Q 044773 166 KA----GISCLKSNAGLFCWVDMRHLLS-S-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLK 238 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~~~~-~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~ 238 (289)
++ ++......-|.++.+.+..... . ........+...++ ++||.+.+...+ ...+||.++. +++++++
T Consensus 924 ~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~~----~~vlr~~Ppl~it~~~id 998 (1013)
T PRK06148 924 ELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGPH----DNVLKIRPPLIFSRADAD 998 (1013)
T ss_pred HHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCCC----CCEEEEeCCccCCHHHHH
Confidence 43 3222222335666677653211 1 11111234666665 679999875322 3579999954 7999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSI 251 (289)
Q Consensus 239 ~~l~~l~~~l~~~ 251 (289)
++++++.+++.+.
T Consensus 999 ~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 999 HLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-11 Score=114.71 Aligned_cols=213 Identities=15% Similarity=0.104 Sum_probs=128.2
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccCCCCCceEEE
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++.+ ++..| ..-.|.. .+++.+++|.++|++||+++|+||++.+++.+|..+.. ...+. .-+
T Consensus 222 ~iaa-vI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~--------------PDi 286 (460)
T PRK12403 222 NVAG-FVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE--------------PDT 286 (460)
T ss_pred ceEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC--------------CCe
Confidence 3445 55556 5556765 57889999999999999999999999988666654321 11121 123
Q ss_pred ecCccccCCCC-ceEEEEEecCHHHHHHHHh------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHH
Q 044773 88 YSLSKDLGLPG-FRVGAIYSNDDTVVAAATK------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK-QRHRK 159 (289)
Q Consensus 88 ~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 159 (289)
.+++|.+| .| +++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+..+- + ...++++ ++.++
T Consensus 287 v~~gK~lg-gG~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~----~l~~~~~~~~g~~ 359 (460)
T PRK12403 287 LSIAKGLT-SGYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-E----GVVTRVKDDTGPY 359 (460)
T ss_pred EEEccccc-ccccceEEEEEC-HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHH
Confidence 35899998 78 499999985 455555431 112233677777777766653221 1 1233332 44444
Q ss_pred HHHHHHh----cCCceecCCceEEEEEecCcccc-CCChh----hHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 160 LVSGLEK----AGISCLKSNAGLFCWVDMRHLLS-SNTFE----AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 160 l~~~l~~----~g~~~~~~~~g~~~~i~~~~~~~-~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
+.+.|++ +++......-|.++.+.+..... ..... ....+...++ +.||.+.+.. +.+|++++
T Consensus 360 l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~~-------~~~~l~Pp 431 (460)
T PRK12403 360 LQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGF-EEGVIIRSTL-------GRMIMAPA 431 (460)
T ss_pred HHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHH-hCCEEEEecC-------CEEEEECC
Confidence 4444443 33322222335566676643211 11000 0122334444 6799997531 35899986
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
. .++++++++++.+.+++++...
T Consensus 432 l~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 432 LVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 6999999999999999987643
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-12 Score=115.46 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=131.2
Q ss_pred CccEEEEeCC-CC-CCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 11 KVKGVLVTNP-SN-PLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 11 ~~~~i~l~~p-~N-PtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++-+|++ .| +. -.| ...+++.++.|.++|++||+++|.||++.+++.+|..+.. +. .+...-+
T Consensus 199 ~iAAviv-EPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~--~~-----------~gv~PDi 264 (443)
T PRK07483 199 TVAAFVA-ETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFAC--EE-----------DGVAPDL 264 (443)
T ss_pred ceEEEEE-eCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHH--hh-----------cCCCCCe
Confidence 4555444 56 42 234 4567889999999999999999999999988666543221 11 1222336
Q ss_pred ecCccccCCCCc-eEEEEEecCHHHHHHHHhc------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGF-RVGAIYSNDDTVVAAATKM------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 88 ~s~sK~~g~~G~-r~G~i~~~~~~~~~~~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
.+++|.++ .|+ ++|.+++++ .+.+.+... .+.+..|++...++.+.|+...- ....++.++..++|
T Consensus 265 v~~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~-----~~l~~~~~~~g~~l 337 (443)
T PRK07483 265 VTIAKGLG-AGYQPIGAVLASD-RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE-----DGLLANVRARGEQL 337 (443)
T ss_pred eeehhhhc-cCccccEEEEEcH-HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHH
Confidence 67899998 885 999999965 444444321 12333788887777776653221 12233344444444
Q ss_pred HHHHHh----cCCceecCCceEEEEEecCccccC-CCh----hhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEe
Q 044773 161 VSGLEK----AGISCLKSNAGLFCWVDMRHLLSS-NTF----EAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFA 230 (289)
Q Consensus 161 ~~~l~~----~g~~~~~~~~g~~~~i~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~ 230 (289)
.+.|++ ++.......-|.+..+++...... ... .....+...++ ++||.+.+..... ......+||.+.
T Consensus 338 ~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~~~~~~~~~~~~l~~~Pp 416 (443)
T PRK07483 338 RARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAM-ARGLMVYPMGGTIDGVRGDHVLLAPP 416 (443)
T ss_pred HHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHH-HCCcEEEecCccccCCCCCEEEEECC
Confidence 444443 232111222245555666432110 000 11234666666 6799998642110 011357999996
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
. .+++++++++++|.+++.+..
T Consensus 417 L~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 417 FIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 799999999999999987643
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-12 Score=117.25 Aligned_cols=216 Identities=13% Similarity=0.065 Sum_probs=130.0
Q ss_pred CccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|++...+.-.|.. .+.+.+++|.++|++||+++|+||++.+++.+|..+.. +.. +...-+.+
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~--~~~-----------gv~PDiv~ 285 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGS--QHF-----------GIKPDLMT 285 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhh--hhc-----------CCCCCeee
Confidence 45565554335555664 57778999999999999999999999988666653221 111 22233667
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHH--h----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAAT--K----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL-KQRHRKLV 161 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~--~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~ 161 (289)
|+|.+| .| +++|.+++++ .+.+.+. . ..+.+..|++...++.+.|+...- ....++. ++..++|.
T Consensus 286 ~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-----~~l~~~~~~~~g~~l~ 358 (456)
T PRK07480 286 IAKGLT-SGYIPMGAVGVGD-RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD-----EGIVERVRDDTGPYLQ 358 (456)
T ss_pred eehhhc-cCCccceEEEEcH-HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 899998 78 4999999954 4455442 1 112334788888877777763221 1122233 23334444
Q ss_pred HHHHh---cCCceecCCceEEEEEecCcccc-CCChhh----HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C
Q 044773 162 SGLEK---AGISCLKSNAGLFCWVDMRHLLS-SNTFEA----EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M 232 (289)
Q Consensus 162 ~~l~~---~g~~~~~~~~g~~~~i~~~~~~~-~~~~~~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~ 232 (289)
+.|++ +++......-|.+..+.+.+... ...+.+ ...+...++ ++||.+.+. + ..+||+++. +
T Consensus 359 ~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~---~----~~l~~~Ppl~i 430 (456)
T PRK07480 359 KRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCF-ANGLIMRAV---G----DRMIISPPLVI 430 (456)
T ss_pred HHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHH-HCCcEEeec---C----CEEEEECCCCC
Confidence 44433 33211222224565666643211 111101 123444555 679998752 1 468999964 6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHh
Q 044773 233 SEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
++++++++++++.+++.+..++
T Consensus 431 t~~eid~~~~~l~~al~~~~~~ 452 (456)
T PRK07480 431 THAEIDELVEKARKALDATAAE 452 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887553
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-12 Score=116.11 Aligned_cols=219 Identities=14% Similarity=0.176 Sum_probs=127.3
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++.-+.++..| ..-.|.+. +++.+++|.++|++||+++|+||++.++ ..+.. ...+..
T Consensus 236 l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~--ga~~~~--------- 303 (474)
T PLN02482 236 VKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG--GAQEYF--------- 303 (474)
T ss_pred HHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc--hHhHHh---------
Confidence 4556655543334455666 55567655 4789999999999999999999999876 44432 112221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+....+.+|+|.+| .|+++|.++++ +.+.+.+... .+.+..|++...+..+.|+... + ....++++
T Consensus 304 --gv~PDi~t~gK~lg-gG~Pigav~g~-~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~---~--~~~~~~~~ 374 (474)
T PLN02482 304 --GITPDLTTLGKVIG-GGLPVGAYGGR-REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQ---Q--PGTYEYLD 374 (474)
T ss_pred --CCCCCEEEecchhh-CCCceEEEEEc-HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHh---c--cCHHHHHH
Confidence 11223568999998 89999999884 5555554321 1122256666665555544321 1 12344555
Q ss_pred HHHHHHHHHHHhc----CCcee-cCCceEEEEEecCc-ccc------CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 155 QRHRKLVSGLEKA----GISCL-KSNAGLFCWVDMRH-LLS------SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g~~~~-~~~~g~~~~i~~~~-~~~------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
++.++|.+.|+++ |+.+. ..-+|++. +.+.. +.. .........+...++ ++||.+.|... . .
T Consensus 375 ~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~-~~Gv~~~~~~~-~---~ 448 (474)
T PLN02482 375 KITKKLIQGILEAGKKAGHEMCGGYISGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGML-EEGVYLAPSQF-E---A 448 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcccceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHH-HCCeEEeccCC-C---C
Confidence 5555555555543 44443 23344432 22221 100 001111234666666 56999987422 1 1
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
++ +++. +++++++++++++.+++.+
T Consensus 449 ~~--psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 449 GF--TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred Cc--CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 11 3444 6999999999999998864
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-11 Score=115.58 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=132.7
Q ss_pred CccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++-+|++...+.-.|.. .+++.+++|.++|++||+++|+||++.+++.+|..+.. .... +...-+.+
T Consensus 220 ~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~-~~~~-----------gv~PDivt 287 (466)
T PRK07036 220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFAS-EAVF-----------GIQPDIIT 287 (466)
T ss_pred ceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhh-hhhc-----------CCCCCEEE
Confidence 45554544335555664 57889999999999999999999999988666643211 1111 11222567
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh-------c--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK-------M--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~-------~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
++|.+| .| +++|.+++++ .+.+.+.. + .+.+..|++...++.+.|+... + ....++.++..++
T Consensus 288 ~gK~l~-gG~~Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~---~--~~l~~~~~~~g~~ 360 (466)
T PRK07036 288 FAKGLT-SGYQPLGAVIISE-RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIME---R--EGLCEHVREVGPY 360 (466)
T ss_pred Eccccc-cCccccEEEEEcH-HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHH
Confidence 899998 88 5999999954 44444431 1 1133367887777766665321 1 1233344444444
Q ss_pred HHHHHHhc---CCceecCCceEEEEEecCccccC-CC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 160 LVSGLEKA---GISCLKSNAGLFCWVDMRHLLSS-NT----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 160 l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~-~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
|.+.|+++ ++......-|.++.+.+...... .. ..-...+...++ +.||.+.|.. +.+|++++.
T Consensus 361 l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~-------~~~~l~Ppl 432 (466)
T PRK07036 361 FEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQ-ERGLLVRPLE-------HLCVLSPPL 432 (466)
T ss_pred HHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHH-HCCcEEeecC-------CEEEEeCCC
Confidence 55555432 32222223355666776432111 00 011234555555 6799997631 368898864
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 232 -MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
+++++++++++++.+++++..+.+
T Consensus 433 ~it~~~id~~~~~l~~al~~~~~~~ 457 (466)
T PRK07036 433 IITRAQIDEIVAILRAAIEETADEL 457 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999998876544
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-12 Score=113.94 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=122.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN-IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~-~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++++|++.+|+||+..+.+ +++|+++|+++| +++++|+.+....+ ....+
T Consensus 133 l~~~l~--~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~-----~~pL~------------ 190 (386)
T PF01053_consen 133 LEAALR--PNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYN-----QNPLE------------ 190 (386)
T ss_dssp HHHHHC--TTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTT-----C-GGG------------
T ss_pred HHhhcc--ccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceee-----eccCc------------
Confidence 344555 47999999999999988877 999999999998 99999999975311 11111
Q ss_pred CCceEEEecCccccC-CCCceEEEEEecC-HHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLG-LPGFRVGAIYSND-DTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g-~~G~r~G~i~~~~-~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
.+-++++.|++|+++ .+..=.|.+++++ +.+.+.++...... ..++.....+.+-++. +..+.++..++
T Consensus 191 ~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-------l~~R~~~~~~n 263 (386)
T PF01053_consen 191 LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-------LPLRMERQNEN 263 (386)
T ss_dssp GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-------HHHHHHHHHHH
Confidence 245689999999995 4446678888866 45655554433222 1344444444444444 45556667778
Q ss_pred HHHHHHHHHhcC-Cc-eecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 157 HRKLVSGLEKAG-IS-CLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 157 ~~~l~~~l~~~g-~~-~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
.+.+.+.|+++. ++ +..| -+| .+.+++.... +.+..+.+.-.++.. |..+
T Consensus 264 A~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg-l~sf~l~~~~---------~~~~~f~~~l~l~~~-~~Sl 332 (386)
T PF01053_consen 264 AEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG-LLSFELKGGE---------EAARRFLDALKLFSI-APSL 332 (386)
T ss_dssp HHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS-EEEEEESSHH---------HHHHHHHHH-SSSEE-SSS-
T ss_pred HHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc-eeEEEeccch---------hhhHhHHhhhhhHhh-hhhc
Confidence 888999998872 22 2222 234 5557777542 123333334344322 2222
Q ss_pred CC-------------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 218 HC-------------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 218 ~~-------------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
|. ..++.+|||++. |+.+++++.|.++++
T Consensus 333 Gg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 333 GGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred CCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 21 124789999997 778888888888775
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-12 Score=113.86 Aligned_cols=138 Identities=7% Similarity=0.020 Sum_probs=88.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++|+|++++|+||++. ..++++|+++|+++|+++|+|++|....+ .... ..
T Consensus 142 l~~al~--~~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----~~pl------------~~ 199 (395)
T PRK05967 142 IAKLMR--PNTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLY-----FRPL------------DF 199 (395)
T ss_pred HHHhcC--cCceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCcee-----cChh------------Hc
Confidence 344444 56999999999999754 55699999999999999999999975321 1111 23
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+-++++.|++|+++ .++.-.|+++.+ +.+.+.+....... ...+...-+..++... +.+.-+.++..++...+
T Consensus 200 GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~-G~~~~p~da~l~~rgl----~Tl~lR~~~~~~na~~l 273 (395)
T PRK05967 200 GVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTL-GLCAGPDDTYQILRGL----RTMGIRLEHHRKSALEI 273 (395)
T ss_pred CCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHc-CCCCCHHHHHHHHcCc----ccHHHHHHHHHHHHHHH
Confidence 56699999999985 456888877764 44433333222111 2222333333333332 22455556667777778
Q ss_pred HHHHHhc
Q 044773 161 VSGLEKA 167 (289)
Q Consensus 161 ~~~l~~~ 167 (289)
.+.|+++
T Consensus 274 A~~L~~h 280 (395)
T PRK05967 274 ARWLEGR 280 (395)
T ss_pred HHHHHhC
Confidence 8888876
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-12 Score=113.62 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=134.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++++++..+|-||...+ +++|.++|+++++++++|.+++- +.....+. ..
T Consensus 132 ~~~~l~--~~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~----g~~~id~~------------~~ 190 (371)
T PF00266_consen 132 LEEALN--PDTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSA----GCVPIDLD------------EL 190 (371)
T ss_dssp HHHHHH--TTESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTT----TTSS--TT------------TT
T ss_pred hhhhhc--cccceEEeecccccccEEee---eceehhhhhccCCceeEechhcc----cccccccc------------cc
Confidence 455564 68999999999999999999 99999999999999999999983 33333332 33
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--------------------cc--CCCChHHHHHHHHHhCCc
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--------------------SF--GLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--------------------~~--~~~~~~~q~~~~~~l~~~ 139 (289)
+.+++++|..|.+|.+| +|+++.+++.+........ .+ ++.+.+...++..+++..
T Consensus 191 ~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~ 268 (371)
T PF00266_consen 191 GADFLVFSSHKLGGPPG--LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL 268 (371)
T ss_dssp TESEEEEESTSTTSSST--EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeecccccCCCCc--hhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhh
Confidence 66789999999445445 7999997654443311100 01 123445555555555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
. +.-+++..++..+..+++.+.|.++ ++.+..+ ..+-.+.+.++.. + ..++...|.++ ||.+..|
T Consensus 269 ~--~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~------~~~~~~~L~~~-~I~~~~G 338 (371)
T PF00266_consen 269 E--EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-D------ADDVVKYLEER-GIAVSTG 338 (371)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-S------HHHHHHHHHHH-TEEEEES
T ss_pred h--ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-C------HHHHHHHHhhc-CEEEecc
Confidence 1 3336677888899999999999988 4455332 1122344555332 1 24566666655 9999987
Q ss_pred CCCCC------CCCCeEEEEEec-CCHHHHHHH
Q 044773 215 SSCHC------TEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 215 ~~f~~------~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
..+.. ...+.+|+|+.. ++++|++++
T Consensus 339 ~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 339 SACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred CcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 77651 113799999965 799999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=115.03 Aligned_cols=216 Identities=13% Similarity=0.045 Sum_probs=130.7
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|. ..+.+.++++.++|+++|+++|.||++.+++.+|..+.. + ..+...-+.
T Consensus 225 ~iAA-vI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~--~-----------~~gv~PDiv 290 (459)
T PRK06931 225 KPAA-VILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAF--E-----------HAGIEPDII 290 (459)
T ss_pred ceEE-EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHh--h-----------hcCCCCCEE
Confidence 3555 45556 444465 457889999999999999999999999998666653211 1 112233467
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|.+++++ .+ +.+.. ..+.+..|++...++.+.|+...- + ...++.++..++|.+.|++
T Consensus 291 t~gK~l~-gG~Pi~av~~~~-~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~-~----~l~~~~~~~G~~l~~~L~~ 362 (459)
T PRK06931 291 VMSKAVG-GGLPLAVLGIKK-EF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKE-E----NLAQNAAERGEWLKAQLAE 362 (459)
T ss_pred Eeccccc-CCcceeeeeeHH-HH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-C----CHHHHHHHHHHHHHHHHHH
Confidence 7899998 889999988854 33 33321 122334788887777776653211 1 1223333333444444433
Q ss_pred ----cCCceecCCceEEEEEecCccccC------C--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 167 ----AGISCLKSNAGLFCWVDMRHLLSS------N--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 167 ----~g~~~~~~~~g~~~~i~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+++......-|.++.+.+...... . ...-...+...++ +.||.+.++... ...+|+.++. ++
T Consensus 363 l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~----~~~l~~~Ppl~it 437 (459)
T PRK06931 363 LQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLERGGRN----GNVVRLLPPLLIT 437 (459)
T ss_pred HHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEECCCCcC
Confidence 333222222355666666432110 0 0011234555555 679999875322 3579998864 79
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++++++++++.+++.+.-+
T Consensus 438 ~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 438 QAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987543
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-12 Score=117.23 Aligned_cols=210 Identities=14% Similarity=0.177 Sum_probs=122.6
Q ss_pred HHHhhhC-CCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++..+ .++.+ ++..| ..-.|. +.+.+.+++|.++|++||+++|.||++.+++.+|..+. .+..
T Consensus 216 ~~~i~~~~~~iAa-vI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a--~~~~--------- 283 (443)
T PRK08297 216 RAAFERHPHDIAC-FIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWA--YQQL--------- 283 (443)
T ss_pred HHHHHhCCCcEEE-EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHH--HHhc---------
Confidence 3445443 34555 44556 444454 47888999999999999999999999998866554321 1111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHH----HH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA----AT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~----~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
+...-+.+++|.++ .| |.+.. ++ +.+. +. ...+.+..|++...++.+.|+.... + ...++
T Consensus 284 --gv~PDiv~~gK~l~-~~---a~l~~-~~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~----~l~~~ 350 (443)
T PRK08297 284 --GVRPDIVAFGKKTQ-VC---GIMAG-RR-VDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEE-D----GLVEN 350 (443)
T ss_pred --CCCCCEEEeccccc-cc---ceecc-hH-HHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHh-c----CHHHH
Confidence 11122446899985 33 44444 32 2221 11 1122333677777776666653211 1 22233
Q ss_pred HHHHHHHHHHHHHh----cC-Cc-eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 153 LKQRHRKLVSGLEK----AG-IS-CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 153 ~~~~~~~l~~~l~~----~g-~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.++..+++.+.|++ .+ +. ...+. |.++.+.+.+. .....+...++ ++||.+.|+. ...+|
T Consensus 351 ~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~------~~~~~~~~~l~-~~Gvl~~~~~------~~~lr 416 (443)
T PRK08297 351 AARQGEYLLARLEELAAEFPAVVSNVRGR-GLMCAFDLPTT------ADRDEVIRRLW-EEGVLVLPCG------ERSIR 416 (443)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcceeeecc-ceEEEEEecCH------HHHHHHHHHHH-HCCEEEecCC------CCeEE
Confidence 33444444444433 22 21 22233 56666777532 11235777776 6799998743 24689
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
|+++. +++++++++++++.+++++.
T Consensus 417 ~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 417 FRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHhh
Confidence 98743 79999999999999988754
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-12 Score=113.67 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=140.5
Q ss_pred hHHHhhhCC-CccEEEEeCC--CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHL-KVKGVLVTNP--SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p--~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+|+.+..+. ..-+.++..| +.-+|..+ ++..++++.++|++||+++|.||+-.+++.+|..+..
T Consensus 203 le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~------------ 270 (449)
T COG0161 203 LEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC------------ 270 (449)
T ss_pred HHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh------------
Confidence 455555543 4445577778 44477766 5569999999999999999999999999888876543
Q ss_pred CCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc--c-----ccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM--S-----SFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
+..+...-+.+++|.++ +| +++|.+++.+ .+.+.+... . ..+..|++...++.+-|+-..- ++++++
T Consensus 271 -e~~gi~PDi~~~aKGLT-~GY~Pl~a~l~~~-~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~-e~l~~~- 345 (449)
T COG0161 271 -EHAGIVPDILCLAKGLT-GGYLPLSAVLTSD-RIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEE-EDLLER- 345 (449)
T ss_pred -hhcCCCCCeeeeccccc-ccchhhHhHhhhH-HHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHh-cCHHHH-
Confidence 23344556888999997 55 8888888854 444443322 1 1123677776665555543221 222333
Q ss_pred HHHHHHHHHHHHHHHHh----cCCceecCCceEEEEEecCccccCCChh--hHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 150 KKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWVDMRHLLSSNTFE--AEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~----~g~~~~~~~~g~~~~i~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.++...+|.+.|++ +...-....-|++..+++.......... .....+...+.+.|+.++|.. .
T Consensus 346 ---~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g-------~ 415 (449)
T COG0161 346 ---VAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG-------D 415 (449)
T ss_pred ---HHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC-------C
Confidence 33444445555544 2222223344677777776654422101 111233333447799999962 2
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+-+++.. .++++++++++++.+.+++...
T Consensus 416 ~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 416 VIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred EEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 56666644 6999999999999999987654
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=114.90 Aligned_cols=220 Identities=16% Similarity=0.108 Sum_probs=134.9
Q ss_pred HHHhhhC-CCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 3 QLAQKRH-LKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++..+ .++-+|++. | +.-.|. ..+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +.
T Consensus 205 e~~~~~~~~~iAAvi~E-P~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~--~~--------- 272 (466)
T PRK07030 205 EQTLAEHHDEIAAVIVE-PLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFAC--EQ--------- 272 (466)
T ss_pred HHHHHhCCCceEEEEEe-cccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHH--Hh---------
Confidence 4555443 345554444 5 444465 557789999999999999999999999998766653221 11
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
++...-+.+++|.+| .| +++|.+++++ .+.+.+.. ..+.+..|++...++.+.|+...- ..
T Consensus 273 --~gv~PDiv~~gKgl~-gG~~Pi~av~~~~-ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~-----~~ 343 (466)
T PRK07030 273 --AGIRPDFLCLSKALT-GGYLPLAAVLTTD-TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ-----DN 343 (466)
T ss_pred --cCCCCCEEeeehhcc-CCcccceEEEecH-HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-----cC
Confidence 122233666799998 89 5999999954 44444321 112233678887777776654321 12
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCceecCCceEEEEEecCcccc-CCC----hhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKA---GISCLKSNAGLFCWVDMRHLLS-SNT----FEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~-~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
..++.++..+++.+.|+++ ........-|+++.+.+..... ... .....++...++ ++||.+.+. +
T Consensus 344 l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~---g-- 417 (466)
T PRK07030 344 VIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHAL-ERGALLRPL---G-- 417 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHH-HCCeEEEec---C--
Confidence 2334444445555555443 2211122235666677643211 000 011124566665 679999763 1
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+|+.++. +++++++++++++.+++++.
T Consensus 418 --~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 418 --SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred --CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 368998753 79999999999999999987
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.9e-12 Score=115.79 Aligned_cols=221 Identities=15% Similarity=0.139 Sum_probs=134.1
Q ss_pred HHHhhhC-CCccEEEEeC-CCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRH-LKVKGVLVTN-PSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~-~~~~~i~l~~-p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++..+ .++-+|++.. ++.-.|.. .+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..
T Consensus 214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~--~~~--------- 282 (460)
T PRK06916 214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFAC--EHE--------- 282 (460)
T ss_pred HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHH--Hhc---------
Confidence 4455433 3555655554 25555665 58899999999999999999999999987665543211 111
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
+...-+.+++|.+| .| +++|.++++++ +.+.+.. ....+..|++...++.+.|+... + ...
T Consensus 283 --gv~PDiv~~gK~l~-gG~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~---~--~~l 353 (460)
T PRK06916 283 --NVTPDIMTAGKGLT-GGYLPIAITVTTDE-IYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE---K--TNL 353 (460)
T ss_pred --CCCCCeeeeehhhh-cCccccceeeecHH-HHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHH---h--ccH
Confidence 12222557899998 88 69999999654 4443321 11123367777777666665321 1 123
Q ss_pred HHHHHHHHHHHHHHHHhc---CCc-eecCCceEEEEEecCcccc-CCCh----hhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 150 KKRLKQRHRKLVSGLEKA---GIS-CLKSNAGLFCWVDMRHLLS-SNTF----EAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~---g~~-~~~~~~g~~~~i~~~~~~~-~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
.++++++.+++.+.|+++ ... -.... |.++-+.+.+... .... .....+...++ +.||.+.|..
T Consensus 354 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g----- 426 (460)
T PRK06916 354 IEQVARKTEYVATQLEDLFALKHVGDIRQL-GLMVGIELVKNKETKEPFEWTERVGVQVCKRSR-ELGMLTRPLG----- 426 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEeecC-CceeeEEeecccccccCCCchhhHHHHHHHHHH-HCCeEEEecC-----
Confidence 345555555666666553 211 12222 4455565543211 0000 11134566655 6799998731
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+|+.++. +++++++++++++.+++++..
T Consensus 427 --~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 427 --NTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred --CEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 378998743 799999999999999998654
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=113.86 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=126.9
Q ss_pred hHHHhhhCC-CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHL-KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++..++ ++.+ ++..| ..-.|.+. +.+.+++|.++|+++|+++|+||++.++ ..+.. ...+..
T Consensus 190 l~~~l~~~~~~vaa-vi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~--~a~~~~-------- 257 (428)
T PRK12389 190 LKEALDKWGDEVAA-VLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYG--GAQDLL-------- 257 (428)
T ss_pred HHHHHHhcCCcEEE-EEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcc--hhhHHh--------
Confidence 455565443 3445 55556 66667654 6889999999999999999999999987 33322 111111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+...-+.+++|.+| .|+++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+...- + ...+++
T Consensus 258 ---gv~PDivt~gK~lg-gG~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~----~l~~~~ 327 (428)
T PRK12389 258 ---GVEPDLTALGKIIG-GGLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-E----GVYEKL 327 (428)
T ss_pred ---CCCCCeeeechhhc-CCCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-c----cHHHHH
Confidence 11222568999998 88999999985 455555431 112233677777766666653211 1 233344
Q ss_pred HHHHHHHHHHHHh----cCCceec-CCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 154 KQRHRKLVSGLEK----AGISCLK-SNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 154 ~~~~~~l~~~l~~----~g~~~~~-~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+++.+++.+.|++ +++.... ..+|++ .+.+...... ........+...++ ++||.+.|.. .
T Consensus 328 ~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-~---- 400 (428)
T PRK12389 328 DRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINLAPSK-Y---- 400 (428)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEeecCC-C----
Confidence 5555555555544 3432221 223333 2443321100 00011234566665 6799998752 1
Q ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 222 ~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+.+.+++. +++++++++++++.+++++
T Consensus 401 -~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 401 -EAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred -CCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 12445544 6999999999999998864
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-12 Score=114.67 Aligned_cols=206 Identities=17% Similarity=0.136 Sum_probs=128.0
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+|++... +.-.|.. .+.+.+++|.++|++||+++|+||++.+++.+|..+. .+.. +....+.
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a--~~~~-----------gv~PDi~ 266 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFA--TLAA-----------GVTPDIM 266 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhH--HHhc-----------CCCCCee
Confidence 5666555542 5656764 5678999999999999999999999988755554321 1111 1122244
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++|.++ .| .++|++++++ .+.+.+.. ..+.+..|++...++.+.|+... + ....++++++.++
T Consensus 267 t~gK~l~-gG~~p~~av~~~~-~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~---~--~~~~~~~~~~g~~ 339 (422)
T PRK05630 267 CVGKALT-GGFMSFAATLCTD-KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIE---T--GMWRKQVKRIEAE 339 (422)
T ss_pred eeechhh-cCccccceeeccH-HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHH---h--CcHHHHHHHHHHH
Confidence 8899997 67 5899999954 44544431 12223367777777666665322 1 1223345555555
Q ss_pred HHHHHHhc-CCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHH
Q 044773 160 LVSGLEKA-GISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSED 235 (289)
Q Consensus 160 l~~~l~~~-g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e 235 (289)
+.+.|+++ ..... ...-|.++.+.+..... ...+...++ ++||.+.+. + ..+||.++. .+++
T Consensus 340 l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~------~~~~~~~~~-~~Gl~~~~~---g----~~l~~~PpL~it~~ 405 (422)
T PRK05630 340 LIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVD------MEEATQAAV-DHGVWLRPF---G----RLVYVMPPYITTSE 405 (422)
T ss_pred HHHHHHHhhcCCCeeeeeccccEEEEEECCccc------HHHHHHHHH-HCCeEEEec---C----CEEEEECCccCCHH
Confidence 55555543 11111 11125666677754311 134666655 679998763 1 478999964 7999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDS 250 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~ 250 (289)
++++++++|.++++.
T Consensus 406 ~i~~~~~~l~~al~~ 420 (422)
T PRK05630 406 QIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998864
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=113.60 Aligned_cols=220 Identities=12% Similarity=0.074 Sum_probs=123.0
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.. .++.+ ++..| ..-.| ...+.+.++++.++|+++|+++|.||++. +.. |... ..+..
T Consensus 210 l~~~l~~-~~vAa-vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~-g~Gg--~~~~~--------- 274 (453)
T PRK07046 210 LEAALAD-GDVAA-VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISS-GPGG--YTRAH--------- 274 (453)
T ss_pred HHHHhCC-CCeEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-Ccc-CCcc--hhHHh---------
Confidence 3445532 35555 55556 43334 44566799999999999999999999997 322 1111 12221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+...-+.+++|.+| .|+++|.+++++ .+.+.+.. ..+.+..|++...+..+.|+...- .+..+.
T Consensus 275 --gv~PDi~t~gK~lg-gG~Pi~av~g~~-~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~~~ 349 (453)
T PRK07046 275 --GLEPDFLVVGKPIA-GGVPCAVYGFSA-ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAYAH 349 (453)
T ss_pred --CCCccceeehhhhc-CCCcceeeeehH-HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHHHH
Confidence 22233557999998 899999999954 44554431 112333677777776666553211 111222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcee-cCCceEEEEEecCccccCC--------ChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSN--------TFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
..+.-+..++.|.+.+.+.++... ...|.+ +.+.+....... ...-...+...++ ++||.+.|..
T Consensus 350 ~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~~---- 423 (453)
T PRK07046 350 MLALAARLAAGLRAVIARHGLPWHVTRVGAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLL-NRGVLITPFH---- 423 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEeCcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHH-HCCCEEeccc----
Confidence 222222222333333344454332 222322 333332111000 0011123555666 5699988631
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+.++++++ +++++++.+++++.+++++.
T Consensus 424 ---~~~~~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 424 ---NMMLVCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred ---CcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 35788887 69999999999999988764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=112.69 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ +++|+|++++|+||++.+.+ +++|.++|+++|+++|+|+.|... ...... ..+
T Consensus 141 ~~~I~--~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP-----~~~~pl------------~~G 198 (432)
T PRK06702 141 VALAN--DKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATP-----YLCQAF------------EHG 198 (432)
T ss_pred HHhCC--cCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCch-----hhCChh------------hcC
Confidence 44443 57999999999999999999 999999999999999999998621 111111 224
Q ss_pred ceEEEecCcccc-----CCCCceE-----EEEEecCHHHHH-----------------------HHHhcccc-CCCChHH
Q 044773 83 RVHIVYSLSKDL-----GLPGFRV-----GAIYSNDDTVVA-----------------------AATKMSSF-GLVSSQT 128 (289)
Q Consensus 83 ~~i~i~s~sK~~-----g~~G~r~-----G~i~~~~~~~~~-----------------------~~~~~~~~-~~~~~~~ 128 (289)
-++++.|+||++ +++|.++ +|..+++..+.. .......+ ...++..
T Consensus 199 ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~ 278 (432)
T PRK06702 199 ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFN 278 (432)
T ss_pred CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHH
Confidence 459999999955 3445454 344332221110 11111222 2356676
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 129 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
...+...|+.. ..+.++..++...+.+.|+++
T Consensus 279 a~l~~rgL~Tl-------~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 279 AYISNIGLETL-------HLRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 66677767653 333333457778888888876
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=109.61 Aligned_cols=222 Identities=15% Similarity=0.142 Sum_probs=136.5
Q ss_pred ChHHHhhhCCCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 1 AYQLAQKRHLKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 1 ~l~~~~~~~~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++++.++--+-||..| .|. |. ...++.++.|.++|+++|+++|.||+..++.+.-........
T Consensus 189 al~~~~~~~g~~IAaVIvEPv~gn~-g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~g--------- 258 (432)
T COG0001 189 ALEEAFEEYGDDIAAVIVEPVAGNM-GVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYG--------- 258 (432)
T ss_pred HHHHHHHHcCCcEEEEEeccccCCC-CCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccC---------
Confidence 36888888854444466667 675 55 456668999999999999999999999987554222223333
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH-hc----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KM----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
...-+.+|+|.+| .|+++|.+.++ ..+.+.+. .. .+....|++...+..+.++.... . ....++
T Consensus 259 -----i~PDlttlGKiIG-GGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~-~---~~~y~~ 327 (432)
T COG0001 259 -----VEPDLTTLGKIIG-GGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT-E---EGVYER 327 (432)
T ss_pred -----cCcchhhhhhhhc-CCcceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHh-c---ccHHHH
Confidence 3344889999999 99999999995 44444332 11 22333677777776666664321 0 013344
Q ss_pred HHHHHHHHHHHHH----hcCCceecC-CceEEEEEecCcc-ccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 153 LKQRHRKLVSGLE----KAGISCLKS-NAGLFCWVDMRHL-LSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 153 ~~~~~~~l~~~l~----~~g~~~~~~-~~g~~~~i~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
+.+..++|.+.|+ ++|+.+... .++++. +-+.+. ... .......++...++ +.||.+.|+.+=
T Consensus 328 l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~-i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ps~~e--- 402 (432)
T COG0001 328 LDALGERLAEGLRAAAERHGIPLTVNRVGSMFG-IFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLAPSQFE--- 402 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeeecceEE-EEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccCCcccc---
Confidence 4444555555554 447665432 333333 222221 110 01112234666777 559999986421
Q ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..=+|.+ +++++++..++++.++++...
T Consensus 403 ---a~flS~a-hte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 403 ---AGFLSTA-HTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred ---ceeeecc-cCHHHHHHHHHHHHHHHHHhh
Confidence 1235556 699999999999998877653
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=114.35 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=120.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+++..+.++..|- .|...+.+.+++|.++|++||+++|+||++.++.+.+ ....+..
T Consensus 177 l~~~l~~~~~~~aavi~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~----------- 240 (431)
T PRK06209 177 LEALFEDHPGRIACVILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLY----------- 240 (431)
T ss_pred HHHHHHhCCCCEEEEEEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHh-----------
Confidence 45556544333344555662 2446788999999999999999999999998764421 1112111
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHH--HH-----h---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA--AT-----K---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~--~~-----~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
+...-+.+++|.+| .|+++|++++++ .+.+. +. . ..+....|++...++.+.|+... + ....+
T Consensus 241 gv~PDi~t~gK~lg-gG~p~~av~~~~-~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~---~--~~~~~ 313 (431)
T PRK06209 241 GIVPDLSCFGKALG-NGFAVSALAGKR-EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR---D--EDVIE 313 (431)
T ss_pred CCCcceeeehhhhc-CCcccEEEEEHH-HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh---c--cCHHH
Confidence 11123588999998 789999999954 44443 21 0 11222245555555545444321 1 12344
Q ss_pred HHHHHHHHHHHHHHh----cCCcee-cCCceEEEEEecC-ccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 152 RLKQRHRKLVSGLEK----AGISCL-KSNAGLFCWVDMR-HLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~----~g~~~~-~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
+++++.+++.+.|++ +++... ...|.+..+.-+. .........-...+...++ +.||.+.| +
T Consensus 314 ~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~p~-----------l 381 (431)
T PRK06209 314 RLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETI-RRGVLMPS-----------L 381 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHH-HCCccccc-----------c
Confidence 444445555555543 444321 1123222211111 1111111111124566666 56987622 4
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+|+.. +++++++++++++.+++++...
T Consensus 382 ~is~~-ht~~dId~~l~~l~~~l~~~~~ 408 (431)
T PRK06209 382 VVSYA-HGDADIERTIDAVHGALGVYRK 408 (431)
T ss_pred ccccc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 66654 6999999999999999988743
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=109.31 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++.+|+||+-.+.+ +++|.++|+++|+++|+|+.|....+- ... ..+-+|++.|
T Consensus 148 ~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q-----~PL------------~~GaDIVvhS 207 (396)
T COG0626 148 PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQ-----RPL------------ELGADIVVHS 207 (396)
T ss_pred cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCccccccc-----Chh------------hcCCCEEEEe
Confidence 47999999999999977777 999999999999999999999864332 111 2256699999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHH-hcc-ccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAAT-KMS-SFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~-~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.+|+++ .+.+=.|.++++++.+.+.+. ... .++. .++...+.+.+-++. +.-+.++..++...+.+.|+
T Consensus 208 aTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-------L~~Rm~~~~~nA~~IA~~L~ 280 (396)
T COG0626 208 ATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-------LALRMERHNENALKIAEFLA 280 (396)
T ss_pred ccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHHHh
Confidence 999995 445777877777777776652 222 2332 444555555544444 45556667777888888888
Q ss_pred hc
Q 044773 166 KA 167 (289)
Q Consensus 166 ~~ 167 (289)
++
T Consensus 281 ~~ 282 (396)
T COG0626 281 DH 282 (396)
T ss_pred cC
Confidence 86
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-13 Score=118.05 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=89.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++++++++++++++| ||+|.+++ +++|+++|+++|+++|+|++|... .+.+....+.. .
T Consensus 145 l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~------------~ 208 (294)
T cd00615 145 FKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAA------------M 208 (294)
T ss_pred HHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchh------------h
Confidence 5677776678999999999 78999998 899999999999999999999753 23222111111 2
Q ss_pred CCceEEEecCccccCCCCceEEEE-EecCHHH-HHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAI-YSNDDTV-VAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i-~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+.++++.|++|++ +|++.|++ .+++... ...+.........++++...++.+.....++..+.++..+.+.++.+
T Consensus 209 ~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~ 286 (294)
T cd00615 209 AGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELAL 286 (294)
T ss_pred cCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36779999999987 56665444 4543311 22222222222233333333333333333333334555556666666
Q ss_pred HHHHHHH
Q 044773 159 KLVSGLE 165 (289)
Q Consensus 159 ~l~~~l~ 165 (289)
.+++.+.
T Consensus 287 ~~r~~l~ 293 (294)
T cd00615 287 YARQEIN 293 (294)
T ss_pred HHHHHHh
Confidence 6666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-11 Score=109.98 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|+++... ....++ ..+-++++.|
T Consensus 154 ~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~----~~~~pl-------------~~GaDivv~S 213 (436)
T PRK07812 154 PNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATP----YLIRPL-------------EHGADIVVHS 213 (436)
T ss_pred CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccc----ccCCch-------------hcCCCEEEEe
Confidence 57899999999999999999 999999999999999999998742 111111 1245588899
Q ss_pred CccccCCCCceEEEEEec
Q 044773 90 LSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~ 107 (289)
++|.+|..|--+|.+++.
T Consensus 214 ~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 214 ATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred cccccCCCCCeEEEEEEc
Confidence 999998777777777663
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=111.66 Aligned_cols=219 Identities=13% Similarity=0.092 Sum_probs=134.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.+. ++++|++. .++ +|...+ +++|.++|+++|+++++|++|...........+. ..
T Consensus 175 Le~~l~~~-~pklIv~~-~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p-------------~~ 235 (475)
T PLN03226 175 LEKKAMLF-RPKLIIAG-ASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP-------------FE 235 (475)
T ss_pred HHHHHhhc-CCeEEEEe-cCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC-------------CC
Confidence 45556544 57776553 344 566666 8899999999999999999998543332221111 11
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHH----------HH---HHhc--cccCC-CChHHHHHHHHHhCCchHHHH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVV----------AA---ATKM--SSFGL-VSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~----------~~---~~~~--~~~~~-~~~~~q~~~~~~l~~~~~~~~ 144 (289)
..+++++|++|++ |..| |+++++++... +. +... ..+.. +++....++..+++... ..
T Consensus 236 ~~Div~~t~hK~L~GP~G---g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~--~~ 310 (475)
T PLN03226 236 YCDVVTTTTHKSLRGPRG---GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TP 310 (475)
T ss_pred CCeEEEecCcccccCCCc---eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh--Cc
Confidence 3458899999999 5456 88888654220 22 2211 11221 22233333344344221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCC---C
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCH---C 219 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~ 219 (289)
..++.++++.++.++|.+.|.+.|+++..+. ....+++++.. .... ......+++.||.+..+.-++ +
T Consensus 311 ~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~-------~~~~~~L~~~~I~~nk~~~p~~~~~ 383 (475)
T PLN03226 311 EFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTG-------SRVEKVLDLAHITLNKNAVPGDSSA 383 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCH-------HHHHHHHHHCCCEECCCCCCCCccc
Confidence 2456688899999999999999999887642 23455677632 2221 234555678899987654222 1
Q ss_pred CCCCeEEEEEe-----cCCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFA-----NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~-----~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+..+|++.+ ..++++++++.+.|.++++..
T Consensus 384 ~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 384 LVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred CCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 22456888442 258899999999999998854
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.1e-12 Score=116.32 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=122.3
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+ .++-+|++.....-.|... +.+.+++|.++|+++|+++|+||++.+++.+|..+. .+..
T Consensus 241 l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa--~e~~--------- 309 (464)
T TIGR00699 241 VEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWA--HEHW--------- 309 (464)
T ss_pred HHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhH--HHhc---------
Confidence 35556544 3455655543365567766 788999999999999999999999998766554321 1111
Q ss_pred CCCce--EEEecCccccCCCCceEEEEEecCHHHHH--HHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRV--HIVYSLSKDLGLPGFRVGAIYSNDDTVVA--AATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~--i~i~s~sK~~g~~G~r~G~i~~~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+.. .-+.+++|.+|..| +++.+ +.+.. ...... .+..|++...++.+.|+...- ....++.++
T Consensus 310 --gv~~~PDi~t~gK~lg~gG----~~~~~-~~~~~~~~~~~~~-T~~gnp~~~aaa~a~L~~l~~-----~~l~~~~~~ 376 (464)
T TIGR00699 310 --NLDDPPDMVTFSKKFQTAG----YFFHD-PAFRPNKPYRQFN-TWMGDPSRALILREIIQEIKR-----KDLLENVAH 376 (464)
T ss_pred --CCCCCCCEEEehhhhccCC----ccccc-hhccCCCCccccc-CCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHH
Confidence 111 33577899996344 44442 22211 011222 233677777766655543211 122333444
Q ss_pred HHHHHHHHHHhc----CCce--ec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 156 RHRKLVSGLEKA----GISC--LK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 156 ~~~~l~~~l~~~----g~~~--~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
..+++.+.|+++ +..+ .. ..-|+++-++++.. .....+...++ +.||.+.+. +...+||.
T Consensus 377 ~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~------~~~~~i~~~~~-~~Gvl~~~~------g~~~ir~~ 443 (464)
T TIGR00699 377 VGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE------AKRDKLLKKAR-NNGVNIGGC------GVKAIRLR 443 (464)
T ss_pred HHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH------HHHHHHHHHHH-HCCcEEecC------CCCeEEEe
Confidence 444444444433 2111 11 13366666776432 11245677766 569999763 23679999
Q ss_pred Eec-CCHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l 248 (289)
++. +++++++.++++|.+++
T Consensus 444 Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 444 PMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 954 79999999999998753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-11 Score=109.78 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=61.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||+|.+++ +++|.++|+++|+++|+|++|... + ...++ ..+-++++.|
T Consensus 147 ~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~-~---~~~pl-------------~~gaDivv~S 206 (427)
T PRK05994 147 PRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASP-Y---LIRPI-------------EHGADIVVHS 206 (427)
T ss_pred cCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccc-c---cCCcc-------------ccCCcEEEEc
Confidence 57999999999999999998 899999999999999999999742 1 11111 1245588999
Q ss_pred CccccCCCCceEEEEEe
Q 044773 90 LSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~ 106 (289)
++|.+|.+|-.+|.+++
T Consensus 207 ~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 207 LTKFLGGHGNSMGGIIV 223 (427)
T ss_pred CccccCCCCCcEEEEEE
Confidence 99999867766776655
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=105.61 Aligned_cols=238 Identities=14% Similarity=0.128 Sum_probs=159.3
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-------CCCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-------SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-------~~~~~~~~~~~~~ 71 (289)
++++++.. ++++++.+.+++|.. |+.+|.++++++.++|+++|+.||+|.++..-.. .+....++.++..
T Consensus 166 Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~ 245 (460)
T PRK13237 166 LQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVH 245 (460)
T ss_pred HHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhh
Confidence 45555432 345678888888887 7999999999999999999999999999973211 1233345555444
Q ss_pred ccccccCCCCCceEEEecCccccCCC-CceEEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCCchHHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
++ -.--+....|++|.++.+ | |+++++++.+.+.++... +++..+.-...+++..+.+... .
T Consensus 246 e~------~s~aD~~t~S~~K~~~~~~G---G~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~-~ 315 (460)
T PRK13237 246 EM------FSYADGCTMSGKKDCLVNIG---GFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ-Y 315 (460)
T ss_pred hc------cCcCcEEEEeCCCCCCCCCc---eEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch-H
Confidence 32 123457788899999766 6 999999998888777552 1222222344455555554322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEe-CCCC-CCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNIS-PGSS-CHC 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~-pg~~-f~~ 219 (289)
+++..+. .+.++|.+.|.+.|+.+..|.||.-++++....... ........++..|-.+.||-.. -|+. ++-
T Consensus 316 ~y~~~ri----~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~ 391 (460)
T PRK13237 316 EYIEHRV----GQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGR 391 (460)
T ss_pred HHHHHHH----HHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceeccc
Confidence 3333333 345778999999999999999998888886653221 1224445677888778899743 2222 221
Q ss_pred CC---------CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TE---------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~---------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+ -..+|+++.. -|.+.++-..+++..+.+....
T Consensus 392 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 392 DPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred CCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 11 1579999954 4889999999999988877654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-11 Score=110.74 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=129.4
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++++|| |||.. ..++++|+++|+++|+++++|.++..- ..+. .+.. ..+.+++++
T Consensus 206 ~~~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~-~~g~--~~~~------------~~GaD~~~~ 267 (481)
T PRK04366 206 GEDTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNA-ILGK--ARPG------------DMGFDVVHL 267 (481)
T ss_pred ccCCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhh-hccc--CCcc------------ccCCCEEEE
Confidence 3578999999998 99964 457999999999999999999998521 1121 1111 235679999
Q ss_pred cCccccCCC----CceEEEEEecCHHHHHHHH------hcccc--------------CCC-ChHHHHHHHHHhCCchHHH
Q 044773 89 SLSKDLGLP----GFRVGAIYSNDDTVVAAAT------KMSSF--------------GLV-SSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 89 s~sK~~g~~----G~r~G~i~~~~~~~~~~~~------~~~~~--------------~~~-~~~~q~~~~~~l~~~~~~~ 143 (289)
+.+|.+|.| |-.+|++.++++.. +.+. ....+ .+. +.+...++..++.... .
T Consensus 268 ~~hK~l~~P~g~Ggp~~G~l~~~~~~~-~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G--~ 344 (481)
T PRK04366 268 NLHKTFSTPHGGGGPGSGPVGVKEELA-PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG--A 344 (481)
T ss_pred echhhcCCCCCCCCCCeeeeeehhhhH-hhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH--H
Confidence 999998744 45578888865433 2221 00000 001 1112222222222211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE-EEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~-~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+-+++..++..++.+++.+.|.+. +.+......+. ..++.+. .... .+..++.+.|. ++||.+. +..+....
T Consensus 345 ~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~v~~~L~-~~Gi~~~-~~~~p~~~ 418 (481)
T PRK04366 345 EGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKLKETG---VRTLDIAKRLL-DYGFHPP-TIYFPLIV 418 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccccccC---CCHHHHHHHHH-HCCccCC-cccccccc
Confidence 335566667777788899999875 33221111111 2233321 1111 12345777776 6698865 22221123
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+.+|+++.. ++.+|++.+++.|+++.++...
T Consensus 419 ~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 419 PEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred CCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5689999954 7999999999999999877654
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=113.19 Aligned_cols=206 Identities=15% Similarity=0.121 Sum_probs=141.0
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCce
Q 044773 21 SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFR 100 (289)
Q Consensus 21 ~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r 100 (289)
...-|.+.. +.++++++++|.++++.||+|+.... |.......++.. .|..+.++.+|+|+|++|..|
T Consensus 286 ysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~-g~tGrgvce~~g------~d~~dvDImMGtftKSfga~G-- 353 (519)
T KOG1357|consen 286 YSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAM-GATGRGVCEYFG------VDPEDVDIMMGTFTKSFGAAG-- 353 (519)
T ss_pred eeccCeecc---cHHHHHhhccccEEEEeecccccccc-CCCCcceeeccC------CCchhheeecceehhhccccc--
Confidence 445677777 99999999999999999999996533 343445555433 368889999999999999899
Q ss_pred EEEEEecCHHHHHHHHhcccc-----CCCChHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC
Q 044773 101 VGAIYSNDDTVVAAATKMSSF-----GLVSSQTQYLLSALLS-DKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 174 (289)
Q Consensus 101 ~G~i~~~~~~~~~~~~~~~~~-----~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 174 (289)
||+.++ +.+.+.+...... ..++++.|+.+..+-- .+.--.+..++..+++.+++.+++..++..|+-+.+.
T Consensus 354 -Gyiags-k~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~ 431 (519)
T KOG1357|consen 354 -GYIAGS-KELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGN 431 (519)
T ss_pred -ceecCc-HHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecC
Confidence 999995 5566655543221 2244566665544422 1111155678888999999999999999999988887
Q ss_pred CceEEEEE--ecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 175 NAGLFCWV--DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 175 ~~g~~~~i--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+.+..+.+ ..+.... .+.+.|+ +.+|.++.+.+.. +...+..|++.+. ++.|+++.+++.+.+.=+
T Consensus 432 ~dSpVvplll~~~~k~~--------~f~r~~l-~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 432 NDSPVVPLLLYGPAKIV--------AFSREML-ERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred CCCCcceeeecCccccc--------HHHHHHH-hcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 77644322 2222221 3666777 4477776443322 2335778999954 799999999988876543
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=113.63 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=130.4
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-++++... +.-.|..+ +++.+++|.++|++||+++|.||++.+++..|..+.. + ..+...-|.
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~--e-----------~~gv~PDIi 650 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW--E-----------LLGCKPDIA 650 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhH--H-----------hcCCCCCEE
Confidence 4555454432 56667765 6889999999999999999999999999777765422 1 123334577
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR- 158 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 158 (289)
+++|.++ +| +++|.++++ +.+.+.+.. ..+.+..|++...++.+.|+...- .+......+..++..+
T Consensus 651 ~~gKgLt-gG~~Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~~~l~~~~~~l~~~ 727 (817)
T PLN02974 651 CYAKLLT-GGLVPLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTNPNLIPPGSRLREL 727 (817)
T ss_pred eeccccc-CCCCccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence 8999998 88 799999995 444544421 112334788888877666653221 1111222222222222
Q ss_pred ---HHHHHHHhcCCceecCCceEEEEEecCccccCCCh--hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cC
Q 044773 159 ---KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTF--EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NM 232 (289)
Q Consensus 159 ---~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~ 232 (289)
.+.+.+.++........-|.++.+++.+......+ .-...+...++.+.||.++|.. +.+|+.+. .+
T Consensus 728 l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-------nvi~l~pP~~i 800 (817)
T PLN02974 728 WDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-------NVVYLMCGPTT 800 (817)
T ss_pred HHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-------CEEEEeCCCCC
Confidence 33334444322111222356666777542211111 1123455555537799998741 46887664 37
Q ss_pred CHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFV 248 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l 248 (289)
+++++++++++|.+.+
T Consensus 801 ~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 801 SPETCTRLLRKVYRRL 816 (817)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=109.01 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=124.4
Q ss_pred CCccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++.+|++...+...|. ..+.+.+++|.++|+++|+++|+||++.++ ..|..+.. . . .+....+.
T Consensus 161 ~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~-~-~-----------~gv~PDiv 226 (364)
T PRK04013 161 KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAI-E-H-----------YKVEPDIV 226 (364)
T ss_pred CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHH-H-h-----------cCCCCCEE
Confidence 35777666644554555 457789999999999999999999999987 55543221 1 1 12223366
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
+++|.+| .|+++|.++.+.+. .. ..... .+..|++...++.+.|+...- ++..+..++. +. .+.. .
T Consensus 227 ~~gK~lg-gG~P~~a~~~~~~~-~~-~~~~~-T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~-------l~-~l~~-~ 292 (364)
T PRK04013 227 TMGKGIG-NGVPVSLTLTNFDV-ER-GKHGS-TFGGNPLACKAVAVTLRILRR-ERLVEKAGEK-------FI-EIKG-E 292 (364)
T ss_pred Eeccccc-CCceeEEEEecccc-cC-CCcCC-CCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------HH-Hhcc-C
Confidence 7799998 78999999986543 11 11222 333778887777776664321 1112222221 11 2211 1
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
+-.....-|.++-+++..+ ...+...++ ++|+.+.+. +...+||.++. .+++++++++++|.++
T Consensus 293 ~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~------g~~vlr~~Ppl~it~~~i~~~~~~l~~~ 357 (364)
T PRK04013 293 RVVTTRGRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTA------GQRVIRLLPPLIISKDTMEEAKSAIEGV 357 (364)
T ss_pred cceeeeeCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeC------CCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 1111122256777777532 134666665 679998763 23679999964 6999999999999999
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
+.+.
T Consensus 358 l~~~ 361 (364)
T PRK04013 358 INDI 361 (364)
T ss_pred HHHH
Confidence 8753
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-11 Score=110.21 Aligned_cols=205 Identities=10% Similarity=0.094 Sum_probs=114.7
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++.++++...+.-.|.. .+.+.+++|.++|+++|+++|+||++++++.+|..+. .+.. +...-+-
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a--~~~~-----------gv~PDi~ 283 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWA--YQQL-----------GVQPDIV 283 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHH--HHhc-----------CCCCCEE
Confidence 356665555335556655 5788999999999999999999999998766554321 1111 1112234
Q ss_pred cCccccCCCCceEEEEEecCHH--HHH-HHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDT--VVA-AAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~--~~~-~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+++|.+. .+ |++.. ++. +.. ... ...+.+..|++...++.+.|+...- ....+..++.-+...+.|.+
T Consensus 284 ~~gK~~~-~~---g~~~~-~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~ 357 (431)
T TIGR03251 284 AFGKKTQ-VC---GIMAG-RRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE-ERLVDNARVQGAHLLARLHE 357 (431)
T ss_pred EecccCc-cc---eEEec-chHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 5789873 32 55554 321 111 111 1122233677777766666653211 11122222222222333333
Q ss_pred HHHhcC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 163 GLEKAG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 163 ~l~~~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
...+.+ +......-|.++.+.++.. .....+...++ ++||.+.|.. ...+||+++. ++++|++++
T Consensus 358 l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~-~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~ 424 (431)
T TIGR03251 358 LAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQLY-REGVLLLGCG------ERSIRFRPPLTVTREEIDAA 424 (431)
T ss_pred HHHhCccceecccccceeEEEEeCCH------HHHHHHHHHHH-hCCeEEecCC------CCeEEEECCccCCHHHHHHH
Confidence 223332 3222222256666777532 11235777776 6799997742 2468998854 799999999
Q ss_pred HHHHHH
Q 044773 241 MQRLKA 246 (289)
Q Consensus 241 l~~l~~ 246 (289)
++++.+
T Consensus 425 l~~l~~ 430 (431)
T TIGR03251 425 IDAIRR 430 (431)
T ss_pred HHHHHh
Confidence 999865
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-11 Score=107.45 Aligned_cols=205 Identities=10% Similarity=0.033 Sum_probs=129.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|.+++..|.||.+.+ +++| ++++|+++|+|.+.+- +....++.+ .++++.
T Consensus 126 ~~~~~lV~~~h~et~tG~~~p---i~~I---~~~~g~~~iVDavqs~----g~~~idv~~--------------~D~~~~ 181 (361)
T TIGR01366 126 DPGVDVIAWAHNETSTGVAVP---VRRP---EGSDDALVVIDATSGA----GGLPVDIAE--------------TDVYYF 181 (361)
T ss_pred CCCCCEEEEcccCCccceecc---cccc---cccCCCeEEEEcCccc----cCCCCCHHH--------------CCEEEE
Confidence 357999999999999999999 5555 4789999999999983 343344332 347899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh---------c-------------cccCCCChHHHHHHHHHhCCchHHHHH-
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK---------M-------------SSFGLVSSQTQYLLSALLSDKKFAQNY- 145 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---------~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~- 145 (289)
|..|.+|.+|- ++.++.+++.+.+.... + ...++++.....++..+++. +.+.
T Consensus 182 s~~K~lg~~~G-l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~---l~~~g 257 (361)
T TIGR01366 182 APQKNFASDGG-LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDW---MNGNG 257 (361)
T ss_pred EchhhcCCCCc-eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHH---HHHcc
Confidence 99999987752 55556655444322100 0 01121222222233444432 2222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcC-CceecC-C---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 -ISENKKRLKQRHRKLVSGLEKAG-ISCLKS-N---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 -~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++...+++++..+++++.+.+.+ ++.... . ......+.+++..+ ..++...| +++||.+.++. +.
T Consensus 258 g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~------~~~v~~~L-~~~gI~i~~~~--~~ 328 (361)
T TIGR01366 258 GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDID------AATVAKIL-RANGIVDTEPY--RK 328 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccC------HHHHHHHH-HHCCCeeccCc--cc
Confidence 45666888899999999999885 444321 1 11112233333222 23466666 56799997764 22
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
.....+||++.. ++.++++.++++|++++++
T Consensus 329 l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 329 LGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 235689999954 8999999999999998764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-11 Score=103.74 Aligned_cols=209 Identities=17% Similarity=0.154 Sum_probs=132.9
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++.++++.|++|-.|+++|.++|++|.++|+++|+.+..|-+--........ .+..++. ...+.+.
T Consensus 127 ~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~----------~~~D~v~ 195 (342)
T COG2008 127 HHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIK----------SYVDSVS 195 (342)
T ss_pred ccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHH----------hhCCEEE
Confidence 3456667777777667899999999999999999999999999996433222222 4555563 2455677
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCC---hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVS---SQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
.++||..+.|+ |.|+.-+..++..+..+ ...+..- .+.-.....+|++.- ......+-.+..++|.+.
T Consensus 196 ~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~-----~~~~~~Han~mA~~La~~ 267 (342)
T COG2008 196 FCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDV-----WRLAADHANAMAARLAEG 267 (342)
T ss_pred EecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHh
Confidence 78999988665 88887676665544332 2222211 122222333344432 233344555557889999
Q ss_pred HHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHH
Q 044773 164 LEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 164 l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+++. |+++..|.-...+++++++... +....... +...|+.+.++. ..+|+.+++ ++++++++++
T Consensus 268 ~~~~~G~~~~~~~~tN~vf~~l~~~~i-----~~l~~~~~-~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~ 334 (342)
T COG2008 268 LEAKPGVKLAFPVETNMVFVRLPESAI-----EALRLAGA-LFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELV 334 (342)
T ss_pred hhhcCCceeccCCcccEEEEECChHHH-----HHHHhhch-hheeeeeccCCC-------ceEEEEeeccCCHHHHHHHH
Confidence 9865 9998876555677788885311 11122222 223344444322 368999976 7999999999
Q ss_pred HHHHHHH
Q 044773 242 QRLKAFV 248 (289)
Q Consensus 242 ~~l~~~l 248 (289)
+.++.++
T Consensus 335 ~~~~~~~ 341 (342)
T COG2008 335 AAIKALL 341 (342)
T ss_pred HHHHHhh
Confidence 9888764
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=106.96 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=134.7
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.... +..++++.+|+ ||.....+++++|.++|+++|+++|+|++|+.. . .......... .+.
T Consensus 194 Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~----~--~~~~~~~~~g----~~~ 261 (444)
T TIGR03531 194 IERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQ----S--NKYMELINKA----IKV 261 (444)
T ss_pred HHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCc----C--hhhhhhhhcc----ccc
Confidence 456665322 56777887775 444445566999999999999999999999842 1 1111111100 001
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
..-++++.|++|.+.++|. .|.++++++.+.+.+.........+++.+.+...++..+ .+.++++.+...++++++
T Consensus 262 Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~~g~~~li~~~~~~a~~l 337 (444)
T TIGR03531 262 GRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---SKGYLELLKERKEMYKYL 337 (444)
T ss_pred cCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH
Confidence 1125778899999987665 344447677776666554332324456777766666544 456777777888888888
Q ss_pred HHHHHhc----CCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE----EeCCC----------CCCC--
Q 044773 161 VSGLEKA----GISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN----ISPGS----------SCHC-- 219 (289)
Q Consensus 161 ~~~l~~~----g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~----------~f~~-- 219 (289)
.+.|.++ |.++... ...+.+.+.+..... .+...+...| ...+|. |.||. +|+.
T Consensus 338 ~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~----~~~~~~g~~l-~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~ 412 (444)
T TIGR03531 338 KELLQKLAERHGERLLDTPENPISSAMTLSTLKG----KDPTMLGSML-YSRRVTGPRVVTNGDSKTVGGCEFKGYGSHT 412 (444)
T ss_pred HHHHHHHHHhhCcEeecCCCCceeEEEecccccc----cCHHHHHHHH-HhCCCCCceeecCCCceEECCEEeecccccc
Confidence 8888765 6666543 333344444443211 1123344444 344552 34555 2222
Q ss_pred --CCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 220 --TEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 220 --~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
.+-.|+-++.+- ++.+|++.++++|.++
T Consensus 413 ~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 413 SNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred cCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 112466666643 7999999999999764
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-10 Score=103.57 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=156.5
Q ss_pred hHHHhhhC--CCccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-Cc-c-----CCCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TV-F-----SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~-~-----~~~~~~~~~~~~~ 71 (289)
++++++.. +++++|.+++++|- .|+++|.++++++.++|+++|+.|++|.++.. .. | .+....++.++..
T Consensus 159 Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~ 238 (450)
T TIGR02618 159 LQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILK 238 (450)
T ss_pred HHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHH
Confidence 45555532 24568889999874 58999999999999999999999999999974 11 1 1334456655554
Q ss_pred ccccccCCCCCceEEEecCccccCCC-CceEEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCCchHHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
++ ...-+.+..|..|..+.+ | |+++.+++.+.+..+... +++....-...+++..|.+.-. .
T Consensus 239 e~------~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~-~ 308 (450)
T TIGR02618 239 EM------MSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD-Y 308 (450)
T ss_pred HH------hccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh-H
Confidence 43 112335788999998877 7 888878888877766542 1222222334444444544311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEe-CCCC-CCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNIS-PGSS-CHC 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~-pg~~-f~~ 219 (289)
.+. ++-..+.++|.+.|.+.|+.+..|.+|..++++....... ........++..|-.+.||-.. -|+. ++-
T Consensus 309 ~y~----~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~ 384 (450)
T TIGR02618 309 EYI----EHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGR 384 (450)
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceeccc
Confidence 112 2222346788999998899998888888888987764221 1224455677888778899643 2332 121
Q ss_pred CC---------CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TE---------PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~---------~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++ -..+|+++.. -|.+.++-..+++..+.+....
T Consensus 385 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 385 NNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred CCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 11 1579999964 4889999999999998877654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-11 Score=101.57 Aligned_cols=214 Identities=16% Similarity=0.197 Sum_probs=139.7
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccC-hhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVS-IMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (289)
++.+++. ++..+ ++..| +.-.|.+.| ...+++..++|++||+++|.||+++++..+|....- ...+.
T Consensus 199 le~~l~~-~~vaa-FivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~-------- 268 (427)
T KOG1402|consen 199 LEVALKS-PNVAA-FIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVR-------- 268 (427)
T ss_pred HHHHhcC-CCeeE-EEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcC--------
Confidence 5566665 46666 55567 877887765 559999999999999999999999999887764322 11111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+| +--|.|+++..=.+++.+++++ .+...++ +.++++ .|++...++.++|+-.. + +++.+..+.
T Consensus 269 --PD----ivilgKalSGG~~Pvsavl~~~-~im~~~~pgeHgsTyg-gNpLg~~vaiAalevi~--e---ekL~era~~ 335 (427)
T KOG1402|consen 269 --PD----IVILGKALSGGVYPVSAVLADD-DIMLNIKPGEHGSTYG-GNPLGCAVAIAALEVIV--E---EKLVERAAK 335 (427)
T ss_pred --CC----eEEEeccccCCeeeeEEEEecH-HHHhccCCCccccccC-CChHHHHHHHHHHHHHH--H---HHHHHHHHH
Confidence 12 2226799973338999999954 4443343 344444 89999888888877533 2 333444455
Q ss_pred HHHHHHHHHHhcC--C----ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 156 RHRKLVSGLEKAG--I----SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 156 ~~~~l~~~l~~~g--~----~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
.-..|+..|.++. + +..... |++..+.+... .....++++.+-.+ ++.|+.--|.. ..-+|+++
T Consensus 336 lG~~l~~~L~~l~~~~p~~v~~VRGr-Gl~~ai~i~~~--~~~~~~aw~~cl~l-k~~g~LAkptH------~~IiRfaP 405 (427)
T KOG1402|consen 336 LGEILRDQLNKLQKKFPHVVKEVRGR-GLLNAIVINPS--KTSGQDAWDVCLAL-KENGLLAKPTH------GNIIRFAP 405 (427)
T ss_pred HHHHHHHHHHhccccccchhheeecc-ceEEEEEeccc--cccchhHHHHHHcc-cccccccCCCC------CCeEEecC
Confidence 5566777777762 2 222233 45655554421 11224556666655 46677766533 45899999
Q ss_pred ec-CCHHHHHHHHHHHHHHH
Q 044773 230 AN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 230 ~~-~~~e~l~~~l~~l~~~l 248 (289)
.. ++++++++.++.+.+.+
T Consensus 406 PL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 406 PLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred CcccCHHHHHHHHHHHHHHh
Confidence 54 79999999999998765
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-10 Score=104.46 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=64.7
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++|+|++++|+||+|.+.+ +++|.++|+++|+++|+|.+|..... ..++ ++ +
T Consensus 143 ~~~i~--~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~~pl-~~------------G 200 (433)
T PRK08134 143 RAAIR--PNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----LRPF-EH------------G 200 (433)
T ss_pred HHhcC--CCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hc------------C
Confidence 44443 57999999999999999999 99999999999999999999974211 1121 22 4
Q ss_pred ceEEEecCccccCCCCceEEEEEe
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~ 106 (289)
-++++.|.+|.+|.+|..+|.+++
T Consensus 201 aD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 201 ADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred CCEEEeccccccCCCCCceEEEEE
Confidence 568999999999878877777765
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-11 Score=107.47 Aligned_cols=207 Identities=12% Similarity=0.035 Sum_probs=131.8
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+++|.+++.+|.||...+ +++|++ +++|+++++|.+++- |....++.+ .++++.|..
T Consensus 137 ~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~----G~~pidv~~--------------iD~~~~s~~ 193 (378)
T PRK03080 137 DRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSAA----FALPLDWSK--------------LDVYTFSWQ 193 (378)
T ss_pred CCCEEEEecCCccceecc---chhhcc--ccCCCeEEEeccccc----ccCCCCHHH--------------CcEEEEehh
Confidence 466899999999999999 777777 788999999999983 333344332 348899999
Q ss_pred cccCC-CCceEEEEEecCHHHHHHHHhc------------------c---ccCCCChHH---HHHHHHHhCCchHHHHH-
Q 044773 92 KDLGL-PGFRVGAIYSNDDTVVAAATKM------------------S---SFGLVSSQT---QYLLSALLSDKKFAQNY- 145 (289)
Q Consensus 92 K~~g~-~G~r~G~i~~~~~~~~~~~~~~------------------~---~~~~~~~~~---q~~~~~~l~~~~~~~~~- 145 (289)
|.++. +| +|+++.+++.+....... . ..++.+++. ..++..+++. +.+.
T Consensus 194 K~l~~P~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~---l~~~g 268 (378)
T PRK03080 194 KVLGGEGG--HGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDW---ANSIG 268 (378)
T ss_pred hhCCCCCc--eEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHH---HHHcC
Confidence 99963 45 899998655543311100 0 011112222 2222333332 2332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcC-CceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 -ISENKKRLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 -~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++...++.+++.+++++.|++.+ +....+ .++....+.+++. +. . .+ .++...++++ |+.+..|... .
T Consensus 269 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~-~~-~-~~-~~~~~~l~~~-~i~v~~g~~~-~ 342 (378)
T PRK03080 269 GLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA-QA-A-VD-AAAVAKLLRE-NGAVDIEPYR-D 342 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc-hH-H-HH-HHHHHHHHHc-CCeecccccc-C
Confidence 57777888889999999998885 454421 1222344555541 00 0 11 2355666644 8888776432 1
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.+|+|+.. +++++++.+++.|++++++...
T Consensus 343 -~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 343 -APNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred -CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34789999954 7999999999999998876653
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=103.21 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=91.0
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++. +++|+|++.+|+||+|.+.+ +++|+++|+++ ++++++|..|+.. .. .... .
T Consensus 141 ~~~l~--~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p----~~-~~pl------------~ 198 (395)
T PRK08114 141 AKLIQ--PNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAG----VL-FKAL------------D 198 (395)
T ss_pred HHhcC--CCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccc----cc-cCHH------------H
Confidence 44443 47899999999999999999 99999999998 4999999999742 11 2222 2
Q ss_pred CCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+-++++.|.+|+++.++ .-.|.++.+ +...+.+..... .+ ..++.....+.+-++. +.-+.++..++.
T Consensus 199 ~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na 270 (395)
T PRK08114 199 FGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYLMGQMVDADTAYMTSRGLRT-------LGVRLRQHEESS 270 (395)
T ss_pred cCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHH
Confidence 356799999999886454 778877664 334333332221 22 1333443333343443 455566677788
Q ss_pred HHHHHHHHhc
Q 044773 158 RKLVSGLEKA 167 (289)
Q Consensus 158 ~~l~~~l~~~ 167 (289)
..+.+.|+++
T Consensus 271 ~~va~~L~~h 280 (395)
T PRK08114 271 LKVAEWLAEH 280 (395)
T ss_pred HHHHHHHHcC
Confidence 8888888876
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-10 Score=99.52 Aligned_cols=204 Identities=14% Similarity=0.169 Sum_probs=132.2
Q ss_pred EEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 16 LVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 16 ~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
++..| +...|.+ +++..+++..++|+++|.++|.||++++++.+| +++.+ +.++.+..|-|++|.
T Consensus 216 fiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG----~~wgf---------e~h~v~PDIvTmAKg 282 (442)
T KOG1404|consen 216 FIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG----HMWGF---------ESHGVVPDIVTMAKG 282 (442)
T ss_pred EEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc----ccccc---------cccCCCccHHHHHhh
Confidence 55555 6666665 577799999999999999999999999987776 33434 456778889999999
Q ss_pred cCCCCceEEEEEecCHHHHHHHHhcc-ccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Q 044773 94 LGLPGFRVGAIYSNDDTVVAAATKMS-SFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--G 168 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 168 (289)
+| .|+++|.++. .+.+.+.+.... .++ ..+|+...+..+.|+-.. ++ .+.+..++...+|.+.|.+. +
T Consensus 283 iG-nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vik--ee---~LqE~aa~vG~yl~~~l~~l~d~ 355 (442)
T KOG1404|consen 283 IG-NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIK--EE---NLQENAAEVGSYLLEKLAALKDK 355 (442)
T ss_pred cc-CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHHhhc
Confidence 99 9999999999 456666555433 222 267777776666655322 12 22223333334444444443 2
Q ss_pred Cce--ecCCceEEEEEecCccccC---CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 169 ISC--LKSNAGLFCWVDMRHLLSS---NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 169 ~~~--~~~~~g~~~~i~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.+. ....-|.++-+++-+...+ +.......+.+++ ++.|+.+.-|..+|. .+||++.- .|.+|++.+++
T Consensus 356 h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~c-ke~Gvlvg~g~i~G~----vfriaPPlciT~edi~f~~~ 430 (442)
T KOG1404|consen 356 HPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQC-KELGVLVGKGGIHGN----VFRIAPPLCITKEDIDFAVE 430 (442)
T ss_pred CCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHH-HHhCeeeecccccce----EEEecCCeeccHHHHHHHHH
Confidence 222 2233466766776543311 1111122244444 588999977776664 89999953 79999988887
Q ss_pred HH
Q 044773 243 RL 244 (289)
Q Consensus 243 ~l 244 (289)
..
T Consensus 431 ~~ 432 (442)
T KOG1404|consen 431 YF 432 (442)
T ss_pred HH
Confidence 66
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-11 Score=115.89 Aligned_cols=219 Identities=13% Similarity=0.060 Sum_probs=138.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc-----CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK-----NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~-----~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
+++++|.+++.+|.||.+.+.+.+..+.+.++++ ++++++|.+++. +..+.++.++ +.+
T Consensus 191 ~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~------------~~D 254 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRY------------PAD 254 (805)
T ss_pred CCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhc------------CCC
Confidence 4568999999999999999955443333333222 368999999973 4444555544 556
Q ss_pred EEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-------------------------ccCCCChHHHHHHHHHhCCc
Q 044773 85 HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-------------------------SFGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 85 i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~q~~~~~~l~~~ 139 (289)
+++.|++|.+|.| ..+|+++++++.+......+. ..++.|.+...++.++++.
T Consensus 255 fl~~S~HK~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~- 332 (805)
T PLN02724 255 FVVVSFYKIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL- 332 (805)
T ss_pred EEEEecceeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH-
Confidence 9999999999733 348999986554332111100 0112333444445444432
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCceecCC--------ceEEEEEecCccccCCChhhHHHHHHHH
Q 044773 140 KFAQN-YISENKKRLKQRHRKLVSGLEKA-------GISCLKSN--------AGLFCWVDMRHLLSSNTFEAEMELWKKI 203 (289)
Q Consensus 140 ~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~--------~g~~~~i~~~~~~~~~~~~~~~~~~~~l 203 (289)
+.+ -+++..++.++..+++.+.|.++ +++++++. -+..+.+.+...... . .. ...+..+
T Consensus 333 --l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~-~-v~-~~~v~~l 407 (805)
T PLN02724 333 --LNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS-W-VG-HREVEKL 407 (805)
T ss_pred --HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC-E-eC-HHHHHHH
Confidence 222 25677788888889999999876 25566542 122333444432111 1 11 1235567
Q ss_pred HHhcCeEEeCCCCCCCC---------------------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 204 VYDVKLNISPGSSCHCT---------------------------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 204 l~~~gi~v~pg~~f~~~---------------------------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+.++||.++.|.+|.+. +.+.+|+|++. ++.+|++.+++.|++..-
T Consensus 408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 77889999999887531 23889999976 799999999999988655
Q ss_pred HH
Q 044773 250 SI 251 (289)
Q Consensus 250 ~~ 251 (289)
..
T Consensus 488 ~~ 489 (805)
T PLN02724 488 ST 489 (805)
T ss_pred cC
Confidence 44
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-11 Score=104.97 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=85.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|.||+..+.+ +++|.++|+++|++|++|+.+.+..+ .....+ +-+|++.|
T Consensus 161 ~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~-----~~pL~l------------GADIV~hS 220 (409)
T KOG0053|consen 161 ENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYN-----QDPLPL------------GADIVVHS 220 (409)
T ss_pred cCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccc-----cChhhc------------CCCEEEEe
Confidence 36999999999999999988 99999999999999999999985411 111112 45599999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.+|++| .+.+=.|.++.+...+...+..... .+ ..+++....+.+-++.. .-+.++..++...+.+.|++
T Consensus 221 aTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl-------~lRi~~~~ena~~~A~~Le~ 293 (409)
T KOG0053|consen 221 ATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTL-------HLRINKHSENALKIALLLEA 293 (409)
T ss_pred eeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchh-------hhhHHHHHHHHHHHHHHhhh
Confidence 999995 4456678888865665554444332 22 24444444444444432 22223344444445555555
Q ss_pred c
Q 044773 167 A 167 (289)
Q Consensus 167 ~ 167 (289)
.
T Consensus 294 ~ 294 (409)
T KOG0053|consen 294 H 294 (409)
T ss_pred C
Confidence 3
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-10 Score=102.73 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=117.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++ |+|.+.+ +++|.++|+++++++|+|++|+........ . . . . ..++.+.|
T Consensus 105 ~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~~--~---~-~--------~-~~d~~~~S 163 (352)
T cd00616 105 PRTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKGR--K---V-G--------T-FGDAGAFS 163 (352)
T ss_pred cCCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECCE--E---c-c--------c-CcceeEEc
Confidence 5788888764 6898877 888999999999999999999842111110 0 0 0 0 12356677
Q ss_pred Cc--cccCCCCceEEEEEecCHHHHHHHHhccccCC-------------CC-hHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 90 LS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-------------VS-SQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 90 ~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~-------------~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
++ |.++ +...|+++++++.+.+.++.....+. .+ .+.....+..+. . ...+++..++.
T Consensus 164 ~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~--~--l~~~~~~~~~~ 237 (352)
T cd00616 164 FHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLA--Q--LEKLDEIIARR 237 (352)
T ss_pred CCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHH--H--HHhhHHHHHHH
Confidence 66 9884 22358898877665554433211100 00 111111111111 1 22245566667
Q ss_pred HHHHHHHHHHHHhc-CCceecCCc-----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------
Q 044773 154 KQRHRKLVSGLEKA-GISCLKSNA-----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------- 220 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~~~-----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------- 220 (289)
+++.+++.+.|.++ |+++..+.. ...+.+.++.. .. .+..++...|. +.||.+.. .|.+.
T Consensus 238 ~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~v~~~L~-~~gI~~~~--~~~~~~~~~~~~ 310 (352)
T cd00616 238 REIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE-AG---ESRDELIEALK-EAGIETRV--HYPPLHHQPPYK 310 (352)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc-CC---CCHHHHHHHHH-HCCCCeee--ecCccccCHhhh
Confidence 78888899999886 777654321 23334445431 01 12245777664 66996642 22110
Q ss_pred ----------C------CCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 221 ----------E------PGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 221 ----------~------~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
+ .+.+|+++.. ++++|++.+++.|+
T Consensus 311 ~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 311 KLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 0 2679999954 79999999998873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-10 Score=101.67 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=134.1
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++|.+++..+.||...+ ++++.+++++++|.+.+- +..+..+.++ + +++
T Consensus 127 ~~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~----g~~~id~~~~------------d--~~~ 180 (349)
T TIGR01364 127 ISEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSNI----LSRPIDVSKF------------G--LIY 180 (349)
T ss_pred CCCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEccccc----cCccCCHHHc------------c--EEE
Confidence 3458999999999999999765 556668999999999983 3444454433 3 889
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKR 152 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~ 152 (289)
.|..|.+|.+| +|.++++++.+..... ....++++|.....++..+++.. .+. ++.+.++
T Consensus 181 ~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l---~~~gG~e~i~~r 255 (349)
T TIGR01364 181 AGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWL---KEQGGVKAIEKR 255 (349)
T ss_pred EecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHH
Confidence 99999999667 8899886655432101 01112334445555555555532 332 7888899
Q ss_pred HHHHHHHHHHHHHhc-CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 153 LKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++..+++++.|+++ |+..... ..+....+.++.. . . ..++...+ .+.|+++.+|.. ..+.+|+
T Consensus 256 ~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~--~---~-~~~~~~~~-~~~Gi~~~~~~~----~~g~vRv 324 (349)
T TIGR01364 256 NQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE--E---L-EKRFLKEA-EERGLVSLKGHR----SVGGMRA 324 (349)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh--h---H-hHHHHHHH-HHCCCcccCCcc----ccCeeEE
Confidence 999999999999998 5533321 1223344555532 0 1 12344444 467997777654 1358999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|+.. ++.+|++.+++.|++++++
T Consensus 325 S~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 325 SIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ECcCCCCHHHHHHHHHHHHHHHHh
Confidence 9954 7999999999999987653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=96.85 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=131.9
Q ss_pred CCCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.|.+++|++.|-+|-+| .++|.++++++.++|+++++.+..|-+--...- -....++..+... .| -+-
T Consensus 152 ~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAa-vasgV~vk~i~~~--------fD--SVs 220 (384)
T KOG1368|consen 152 MPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAA-VASGVPVKKICSA--------FD--SVS 220 (384)
T ss_pred CCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHH-HHcCCCHHHHHHh--------hh--hhh
Confidence 36799999999976665 999999999999999999999999998752111 1122344455431 12 234
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCC-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLV-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
-+|||.+|.| +|.++.-+..+++..+.+. .++.. -.....+++++..-. +... ..+.-.++.+.+.+.++
T Consensus 221 iCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~----~~~~-~L~~dHk~A~~lAe~~~ 292 (384)
T KOG1368|consen 221 ICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALD----ENVP-LLRADHKRAKELAEYIN 292 (384)
T ss_pred hhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhh----cchH-HHHHHHHHHHHHHHHhc
Confidence 5699999865 5666655666666555442 23221 122333333333221 1122 22333444556777777
Q ss_pred hc-CCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 166 KA-GISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 166 ~~-g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.. ++++..+ .-..+..+.+...- ....+++..+ +++||.+.++..+ .+|+.+-+ .++++++.++.
T Consensus 293 ~~~~i~v~v~a~etNiv~~~l~q~~-----~~~~~l~~~~-~k~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~ 360 (384)
T KOG1368|consen 293 TPEEIRVEVPAVETNIVNMVLCQAR-----LTAEELCKFL-EKNGILLMGGASR------RIRIVLHHQVTDEDVEYVKS 360 (384)
T ss_pred cccceeeecchhhcceeeeeccccc-----CCHHHHHHHH-HHCCeEEeecccc------ceEEEEEEecCHHHHHHHHH
Confidence 66 3776655 22345555554321 2234677766 5889999988765 47999955 79999999999
Q ss_pred HH-HHHHHHH
Q 044773 243 RL-KAFVDSI 251 (289)
Q Consensus 243 ~l-~~~l~~~ 251 (289)
.+ +.++...
T Consensus 361 ~~~k~~~~q~ 370 (384)
T KOG1368|consen 361 VLSKKFLKQL 370 (384)
T ss_pred HHHHHHHhhc
Confidence 99 5555554
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-11 Score=102.37 Aligned_cols=213 Identities=19% Similarity=0.319 Sum_probs=148.7
Q ss_pred hhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC--ccChhhhhhccccccCCCCC
Q 044773 6 QKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 6 ~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~ 82 (289)
+...|.-..|++.-+ |||||.-.+.+.+++|.++.++.+.+-+.|.+|+++.-+... -.++.-++. ...
T Consensus 192 l~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~--------~g~ 263 (427)
T KOG1411|consen 192 LGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE--------DGH 263 (427)
T ss_pred HhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH--------cCC
Confidence 334444445566666 999999999999999999999999999999999987443221 122333333 446
Q ss_pred ceEEEecCccccCCCCceEEEE--EecCHHHHHHHH----hc--cccCCCChHHHHHHHHHhCCchHHHHH---HHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAI--YSNDDTVVAAAT----KM--SSFGLVSSQTQYLLSALLSDKKFAQNY---ISENKK 151 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i--~~~~~~~~~~~~----~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~ 151 (289)
++++..|++|-||+-|-|+|.+ +|.+......++ .. .-+++++.....+++..+.+..+-.+| ++.+..
T Consensus 264 ~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~Mad 343 (427)
T KOG1411|consen 264 EILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMAD 343 (427)
T ss_pred ceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHH
Confidence 7788999999999999999996 566555443332 11 224445557778888889887653344 455667
Q ss_pred HHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++...++.|.+.|+..| |.....+-|+|++-.+.. +..+.|.+++.|.+.. ++ ||
T Consensus 344 Ri~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-----------eQv~~l~ke~~iYmT~--------dG--Ri 402 (427)
T KOG1411|consen 344 RIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-----------EQVDWLTKEYHIYLTK--------DG--RI 402 (427)
T ss_pred hhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-----------HHHHHHHhhheeeecc--------Cc--eE
Confidence 78888888888887763 444667778999876653 3667788898888762 22 99
Q ss_pred EEecCCHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~ 247 (289)
|++..+...+.-+.++|.++
T Consensus 403 S~aG~ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 403 SMAGLSSSNVPYLADAIHAV 422 (427)
T ss_pred eeccccccCCcccchhhHhH
Confidence 99766666666555555443
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-10 Score=101.58 Aligned_cols=207 Identities=14% Similarity=0.167 Sum_probs=113.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+|+ |+||+|...+ +++|.++|+++|++||+|++|+... +.+....+ ...++
T Consensus 118 ~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~------------------~~~~~ 173 (376)
T TIGR02379 118 HRTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALGS------------------IGHLG 173 (376)
T ss_pred cCceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccCC------------------CCCEE
Confidence 4688875 6678999988 8899999999999999999998543 33322111 11233
Q ss_pred cCc----cccCCCCceEEEEEecCHHHHHHHHhccccCC-------------------CCh-HHHHHHHHHhCCchHHHH
Q 044773 89 SLS----KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-------------------VSS-QTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 89 s~s----K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~-------------------~~~-~~q~~~~~~l~~~~~~~~ 144 (289)
+|| |.+. +|.+.|+++++++.+.+.++.+...+. .|. +....++-.+.....+++
T Consensus 174 ~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~ 252 (376)
T TIGR02379 174 TFSFHETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR 252 (376)
T ss_pred EEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH
Confidence 444 8886 677889999988877766654332110 111 111112222222222355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCce--ecCCc--e-EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC----
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISC--LKSNA--G-LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS---- 215 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~--g-~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~---- 215 (289)
..+++++.++...+.|.....+..+.. .++.. . ++.++.++... +-+++...|. ++||.+.+..
T Consensus 253 ~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~r~~l~~~L~-~~gI~~~~~~~p~~ 325 (376)
T TIGR02379 253 INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDED------DRNELIKYLK-EQEIMAVFHYVPLH 325 (376)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcC------CHHHHHHHHH-HCCCCccccCcCCC
Confidence 555555555554444433221111111 11111 1 12345554321 2245666664 6799876432
Q ss_pred CCC------C-CC---------CCeEEEEE-ecCCHHHHHHHHHHHHHHH
Q 044773 216 SCH------C-TE---------PGWFRVCF-ANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 216 ~f~------~-~~---------~~~~Ris~-~~~~~e~l~~~l~~l~~~l 248 (289)
... . .. ...+.+-+ ..+++++++..++.|++++
T Consensus 326 ~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 326 SSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred cchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 100 0 00 13455555 3379999999999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=101.26 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=136.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++|+|++....|| ..++ ++++.++|+++|+++++|.+|......+...++.. ...+++.+|
T Consensus 297 ~rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~-------------~~aDvvt~T 358 (586)
T PLN02271 297 FRPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPF-------------DYCDIVTST 358 (586)
T ss_pred cCCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCC-------------cCCcEEEeC
Confidence 58999888777787 5666 88889999999999999999975444333222211 124588999
Q ss_pred CccccCCCCceEEEEEecCH-------------------HHHHHHHhc-cccCCCCh--HHHHHHHHHhCCchHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDD-------------------TVVAAATKM-SSFGLVSS--QTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~-------------------~~~~~~~~~-~~~~~~~~--~~q~~~~~~l~~~~~~~~~~~ 147 (289)
.+|++. |-|-|.|+++++ .+.+.+... -.....++ ....+++.+++... ....+
T Consensus 359 THKtLr--GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~--~~efk 434 (586)
T PLN02271 359 THKSLR--GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA--TPEYK 434 (586)
T ss_pred CcccCC--CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh--ChHHH
Confidence 999993 333388888542 133333322 11222333 23344444455322 22236
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC---CCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH---CTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~ 223 (289)
+-.++..++.+.|.+.|.+.|+++... ..+..+++++...-.. -..++..+++.||.+.--.-++ +..++
T Consensus 435 ~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~------G~~ae~~Le~~~I~~Nkn~iP~d~~~~~ps 508 (586)
T PLN02271 435 AYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLT------GKNYEKVCEMCHITLNKTAIFGDNGTISPG 508 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCC------HHHHHHHHHHcCeEeccccCCCCCCCCCCC
Confidence 667778888999999999999987643 3356677888643211 2477778889999985322222 22356
Q ss_pred eEEEEEec-----CCHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-----MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 224 ~~Ris~~~-----~~~e~l~~~l~~l~~~l~ 249 (289)
.+||+... ..++++++..+-|.++++
T Consensus 509 GiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 509 GVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred cccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 79999843 356889998888888877
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=101.91 Aligned_cols=200 Identities=15% Similarity=0.133 Sum_probs=133.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|.+++..+.||...+ ++++| +++++|+|.+.+- |....++.++ + +++.|
T Consensus 140 ~~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~----g~~~idv~~~------------d--~~~~s 193 (360)
T PRK05355 140 DDAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDI----LSRPIDVSKF------------G--LIYAG 193 (360)
T ss_pred CCCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCccc----cCccCCHHHc------------c--EEEEe
Confidence 36899999999999999984 25555 8999999999983 3433444333 3 88999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQ 155 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~ 155 (289)
..|.+|.+| +|.++++++.+..... .....+++|.....++..+|+... +. -++...++.++
T Consensus 194 sqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~--~~gG~e~i~~r~~~ 269 (360)
T PRK05355 194 AQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK--EQGGVAAMEKRNQE 269 (360)
T ss_pred ccccccCCc--eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHH--HccCHHHHHHHHHH
Confidence 999998666 8888886655433111 011123344555556666655321 22 26888899999
Q ss_pred HHHHHHHHHHhcCCc-eecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAGIS-CLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~-~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
..+++++.|+++|+. ...+ ..+....+.++.. .+..++...+. +.|+.+.+|.. ..+.+|+|+..
T Consensus 270 l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~~-~~Gi~~~~~~~----~~g~vRiS~~~ 338 (360)
T PRK05355 270 KAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAEAK-AAGLVGLKGHR----SVGGMRASIYN 338 (360)
T ss_pred HHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHHHH-HCCCcccCCCC----ccCcEEEECCC
Confidence 999999999998642 2111 1223344555543 11123444444 67999866653 23689999965
Q ss_pred -CCHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~ 250 (289)
++.+|++.+++.|+++++.
T Consensus 339 ~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 339 AMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999997764
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=98.79 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=128.8
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++++|.+++..|.||..++ ++++.+|+++++|.+++- |..+.++.++ + +.+
T Consensus 135 ~~~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~----g~~~idv~~~------------~--~~~ 188 (355)
T cd00611 135 LAPDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNI----LSRPIDVSKF------------G--VIY 188 (355)
T ss_pred CCCCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEccccc----cCCCCCHHHh------------C--EEE
Confidence 3468999999999999999743 344459999999999983 4444555443 3 456
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKR 152 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~ 152 (289)
.|..|.+|.+| +|.++++++.+...-. .....+++|.....++.++++. +.++ ++.+.++
T Consensus 189 ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~---l~~~gg~e~i~~~ 263 (355)
T cd00611 189 AGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKW---LKEQGGVEAMEKR 263 (355)
T ss_pred eecccccCCCc--eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHH---HHHcCCHHHHHHH
Confidence 76899998666 8899886655432111 1111233444455555555553 2333 6788899
Q ss_pred HHHHHHHHHHHHHhc-CCc-ee-cC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 153 LKQRHRKLVSGLEKA-GIS-CL-KS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~-~~-~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++..+++++.|+++ |+. .. .+ ..+..+.+.++.. . .+ .++...+ .+.|+...++.. ..+.+|+
T Consensus 264 ~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~--~---l~-~~~~~~~-~r~G~~~~~~~~----~~g~vR~ 332 (355)
T cd00611 264 NRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE--E---LE-KEFLKEA-EAAGMIGLKGHR----SVGGIRA 332 (355)
T ss_pred HHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh--h---hh-HHHHHHH-HHCCCcccCCCc----ccCeEEE
Confidence 999999999999998 752 21 11 1223344555542 0 11 2233444 467998665543 2368999
Q ss_pred EEec-CCHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l 248 (289)
|+.. ++.+|++.+++.|+++.
T Consensus 333 S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 333 SIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred EccCCCCHHHHHHHHHHHHHHh
Confidence 9965 79999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-09 Score=97.71 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=58.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|.||+|.+.+ +++|.++|+++|+++|+|.++... ....+ .++ +-++++.|
T Consensus 154 ~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g----~~~~p-~~~------------GaDivv~S 213 (437)
T PRK05613 154 PNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATA----ALVRP-LEL------------GADVVVAS 213 (437)
T ss_pred ccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccc----cccCh-HHh------------CCCEEEee
Confidence 56899999999999999888 999999999999999999999642 11111 122 45689999
Q ss_pred CccccCCCCceEEEEEe
Q 044773 90 LSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~ 106 (289)
++|.++..|.-+|-+++
T Consensus 214 ~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 214 LTKFYTGNGSGLGGVLI 230 (437)
T ss_pred ccceecCCCcceeEEEE
Confidence 99999755654454444
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=105.50 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=143.3
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++..+ +++++|++++|+|-+|...+ +++|.++|+++|+.+++|-++.-- ..+. .... .
T Consensus 656 L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a-~~~l--~~p~------------~ 717 (993)
T PLN02414 656 LRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNA-QVGL--TSPG------------F 717 (993)
T ss_pred HHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHh-ccCc--CCcc------------c
Confidence 44555543 26899999999999998877 999999999999999999999631 1111 1111 2
Q ss_pred CCceEEEecCccccC----CCCceEEEEEecCHHHHHHHHhc------------cc--cCCCC--h----HHHHHHHHHh
Q 044773 81 WNRVHIVYSLSKDLG----LPGFRVGAIYSNDDTVVAAATKM------------SS--FGLVS--S----QTQYLLSALL 136 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~~~------------~~--~~~~~--~----~~q~~~~~~l 136 (289)
.+-+++++|.+|+|+ .+|-.+|++.+++ .+...+-.. .. .+..+ + +....+..++
T Consensus 718 ~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~-~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi 796 (993)
T PLN02414 718 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYI 796 (993)
T ss_pred cCCCEEEecCCccCCcCcccCCCCeeeEEEch-hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHH
Confidence 366799999999775 2345699998854 333221100 00 11111 1 2222233333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
.... .+-+++..++...+.+++.+.|.+. ++.+..+.+.++ ..+++........ .+..++++.|+ ++||...-
T Consensus 797 ~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g-~~~~di~krL~-d~Gihapt 872 (993)
T PLN02414 797 AMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAG-IEPEDVAKRLM-DYGFHAPT 872 (993)
T ss_pred HHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccC-CCHHHHHHHHH-HcCcEEee
Confidence 3321 4457777888899999999999774 444444443211 2234442111111 22356888888 88997543
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..| +..+.+||++.. .+.+|+|+++++|..+.++...
T Consensus 873 -~~~--pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 873 -MSW--PVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred -ecc--ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 334 347789999954 7999999999999998887664
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=106.17 Aligned_cols=157 Identities=11% Similarity=0.013 Sum_probs=99.8
Q ss_pred hHHHhhhCCCcc--------EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcc
Q 044773 2 YQLAQKRHLKVK--------GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDR 73 (289)
Q Consensus 2 l~~~~~~~~~~~--------~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~ 73 (289)
++++++++|.+| ++++++|+. -|.+.+ +++|+++|+++++.|++||||..+..-.+.++....+..+
T Consensus 295 i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~- 369 (755)
T PRK15029 295 LQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGE- 369 (755)
T ss_pred HHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECccccccccCcccccccccccc-
Confidence 567777777777 999999966 599988 9999999999999999999998763222322211111000
Q ss_pred ccccCCCCCc-eEEEecCccccCCCCceEEEEEecCH--HH-HHHHHhccccCCCChHHHHHHHHHhCCchHHHH-HHHH
Q 044773 74 NCENTEVWNR-VHIVYSLSKDLGLPGFRVGAIYSNDD--TV-VAAATKMSSFGLVSSQTQYLLSALLSDKKFAQN-YISE 148 (289)
Q Consensus 74 ~~~~~d~~~~-~i~i~s~sK~~g~~G~r~G~i~~~~~--~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~ 148 (289)
.....+- ++++.|.+|+++ +=.+.+++...+. .+ .+.++........++++...++.+-....+++. ..++
T Consensus 370 ---~~~~~Gad~~vvqStHKtL~-alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~ 445 (755)
T PRK15029 370 ---PGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLS 445 (755)
T ss_pred ---ccccCCCceEEEEchhhccc-chhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHH
Confidence 0000123 488999999995 3344566666443 22 244554444444666777777777665555443 4555
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 044773 149 NKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~ 167 (289)
..+.+.+....+++.+.+.
T Consensus 446 l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 446 LTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666666677777554
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-09 Score=93.15 Aligned_cols=223 Identities=12% Similarity=0.098 Sum_probs=145.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++..... +||+|+.-....| ..++ .+++.++|.+-|+++++|-+|- ++.-+|..+.++.
T Consensus 158 ~~k~a~e~-kPK~ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~------------- 218 (413)
T COG0112 158 VEKLAKEV-KPKLIIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP------------- 218 (413)
T ss_pred HHHHHHHh-CCCEEEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC-------------
Confidence 34555555 8999776643332 2344 8999999999999999999994 3333343333321
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.-.++.+|.+|+| .|-|-|.|+++++.+.+.++..-- -...+++.-.+++.+....+.++...++-.++.-.+.+.
T Consensus 219 -~AdvVTtTTHKTl--rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAka 295 (413)
T COG0112 219 -HADVVTTTTHKTL--RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKA 295 (413)
T ss_pred -ccceEeCCcccCC--CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 2348899999998 555669999987777777765422 222444443333333332222244456677778888999
Q ss_pred HHHHHHhcCCceecCCc-eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCC---CCCCCeEEEEEec---
Q 044773 160 LVSGLEKAGISCLKSNA-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCH---CTEPGWFRVCFAN--- 231 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~---~~~~~~~Ris~~~--- 231 (289)
|.+.|.+.|+++...-+ +-.+.+++....-. -+.++.++++.||.+. .+..|. +..+..+||....
T Consensus 296 LAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~------Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~Tt 369 (413)
T COG0112 296 LAEALKERGFKVVSGGTDNHLVLVDLRSKGLT------GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTT 369 (413)
T ss_pred HHHHHHHcCCeEecCCccceEEEEEcccCCCC------HHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhh
Confidence 99999999998875332 44566777732111 2577788889999985 333333 3345789999843
Q ss_pred --CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 --MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 --~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..++|+++..+.+.+++....
T Consensus 370 rG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 370 RGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred cCCCHHHHHHHHHHHHHHHhccc
Confidence 356788888888888877544
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=94.72 Aligned_cols=128 Identities=13% Similarity=0.188 Sum_probs=82.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++.+|+|||+.+.+ +++|.++|++++ +++|.++... +.+.+. . .+-++++.|.
T Consensus 148 ~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~~pl----~------------~gaDivv~S~ 205 (384)
T PRK06434 148 NYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQNPL----D------------LGADVVIHSA 205 (384)
T ss_pred CeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccCCch----h------------cCCCEEEeec
Confidence 6899999999999999877 999999999998 4669998532 222221 1 1455889999
Q ss_pred ccccCCCC-ceEEEEEecCHHHHHHHHhcc-ccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 91 SKDLGLPG-FRVGAIYSNDDTVVAAATKMS-SFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 91 sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+|.++.+| .=.|.++++++.+.+.+.... .++. .+++.-..+..-++. +..+.++..++.+.+.+.|+++
T Consensus 206 tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t-------L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 206 TKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT-------LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred ccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 99997434 445788786666655544332 2332 233322222222332 3445555667777778888776
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=97.35 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=72.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ ++++++.+...+|-+|+++| +++|+++|+++++.+++|.+|+- |.-..++.++ +
T Consensus 175 ~~~i~--~~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav----G~i~vDV~el------------n 233 (428)
T KOG1549|consen 175 REAIR--SKTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV----GKIPVDVQEL------------N 233 (428)
T ss_pred HHhcC--CCceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc----CCccccHHHc------------C
Confidence 44444 68999999999999999999 99999999999999999999983 6666777777 5
Q ss_pred ceEEEecCccccCCCCceEEEEEecC
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSND 108 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~ 108 (289)
.+++..|.+|.+|.+| +|++.++.
T Consensus 234 ~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 234 ADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred chheeeecccccCCCc--ceEEEEcc
Confidence 6688999999999888 99999964
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=91.98 Aligned_cols=209 Identities=11% Similarity=0.058 Sum_probs=131.8
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC---CEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN---IHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~---~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++..+ .++.+|+++.++|+||.+-+ +++|.++|+++| +++.+|.+|++....-.........
T Consensus 150 L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~-------- 218 (380)
T PRK02769 150 LISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSF-------- 218 (380)
T ss_pred HHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCc--------
Confidence 45555542 34788899999999999999 899999999998 6999999998643321110000111
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---h---cccc--CCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---K---MSSF--GLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~---~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
..+.+.+..|.+|.++ ....+|.++.+++.+..... . .... ++-+......+...+.... ..-.++.
T Consensus 219 --~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg--~~G~~~~ 293 (380)
T PRK02769 219 --ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLG--SKGLRQR 293 (380)
T ss_pred --cCCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHC--HHHHHHH
Confidence 1145678899999887 44668999997655433211 0 0101 1112234445555555432 3336777
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 150 KKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
.++..+..+++.+.|++.|++.........+.++.+. .++ .+...+...+ .++|+++
T Consensus 294 ~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~----------~~~----~~~w~l~~~~---------~~~hi~~ 350 (380)
T PRK02769 294 VQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS----------ERI----WKKWHLATSG---------NQAHIIT 350 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC----------HHH----HhCeeEcccC---------CEEEEEE
Confidence 8888899999999998888876654443444443331 112 2344444332 3789999
Q ss_pred e-cCCHHHHHHHHHHHHHHHH
Q 044773 230 A-NMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 230 ~-~~~~e~l~~~l~~l~~~l~ 249 (289)
. .++.+.++..++.|...+.
T Consensus 351 ~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 351 MPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 4 4688889999988877665
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=90.09 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=131.3
Q ss_pred hHHHhhhCCC-ccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLK-VKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~-~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++.+.+ +-+ +|..| +.-.|..+ .++.+..|.+.|.++++++|.||++.+++..|... ..+++
T Consensus 196 l~k~~~~h~~~IaA-VIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~--a~e~~-------- 264 (433)
T KOG1401|consen 196 LEKLFESHKGEIAA-VIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW--AQEYF-------- 264 (433)
T ss_pred HHHHHHhCCCceEE-EEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH--HHHHh--------
Confidence 5777877753 445 55557 66666654 67789999999999999999999999876655532 22222
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
.....+.++.|.++ .|+++|..++++ .+.+.+.-.. +.+..|++...+....+....- .++++...+.-
T Consensus 265 ---~~~PDI~t~aK~L~-gGlPigA~~v~~-kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~ 338 (433)
T KOG1401|consen 265 ---GVTPDITTVAKPLG-GGLPIGATGVRD-KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIG 338 (433)
T ss_pred ---CcCCcceeehhhcc-CCceeEEEeehH-HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHH
Confidence 23344788999998 999999999954 4444443221 1233778887777766654332 55567777777
Q ss_pred HHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHH--------HHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 154 KQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEME--------LWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 154 ~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~--------~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
+..++.+.+.+.+.+-.... ...|+++......+..+ +.+.-. ....++ +.|+.+.|-.
T Consensus 339 k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~--~~d~~~~~~ll~~~~~~~~~-~~gv~i~P~~--------- 406 (433)
T KOG1401|consen 339 KELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYK--FADAAREQGLLILTLGKGLL-EEGVRIAPIY--------- 406 (433)
T ss_pred HHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhh--hhhhhhhhhHHHHHHhcccc-cceEEEeccc---------
Confidence 77777788887765222222 33344444443333221 011101 111112 2244444400
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
-++.. .++|.++.+++.+.+.+...
T Consensus 407 -~l~~~-~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 407 -LLTVE-HTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred -ccccc-CcHHHHHHHHHHHHHHHHHh
Confidence 01122 35888888888888877654
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=102.77 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=101.8
Q ss_pred hHHHhhhCCCccE---EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKG---VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~---i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++++|..|+ +++++|+. -|.+.+ +++|+++|++++..|++||||..+..-..-+.+...+-.+ .
T Consensus 156 i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad-----~ 226 (417)
T PF01276_consen 156 IEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGAD-----R 226 (417)
T ss_dssp HHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS------
T ss_pred HHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCc-----c
Confidence 6788888888777 99999966 599988 9999999999999999999998762222222222222111 0
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHH-H-HHHHHhccccCCCChHHHHHHHHHhCCchHH-HHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT-V-VAAATKMSSFGLVSSQTQYLLSALLSDKKFA-QNYISENKKRLKQ 155 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~-~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~ 155 (289)
.....++++.|++|+++ +=.+.+++..+... + .+.++........++++...++.+-....++ ....+++.+...+
T Consensus 227 ~~~~~~~vvqS~HKtL~-altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~ 305 (417)
T PF01276_consen 227 PNDPGIIVVQSTHKTLP-ALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIE 305 (417)
T ss_dssp CTSBEEEEEEEHHHHSS-S-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ccccceeeeechhhccc-ccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 12345688999999996 54667888876653 2 3444444444445666777666666655554 4556667777777
Q ss_pred HHHHHHHHHH---hc-CCceecC
Q 044773 156 RHRKLVSGLE---KA-GISCLKS 174 (289)
Q Consensus 156 ~~~~l~~~l~---~~-g~~~~~~ 174 (289)
+.+.+++.++ +. ++++..+
T Consensus 306 ~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 306 LAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp HHHHHHHHHHHHCCT-SSEESS-
T ss_pred HHHHHHHHHHhcCCCceEecCCc
Confidence 7777888873 33 5555444
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-09 Score=94.68 Aligned_cols=208 Identities=10% Similarity=0.114 Sum_probs=109.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+|+ |+||+|...+ +++|.++|+++|+++|+|++|+. ..+.+... . ..+. .+.
T Consensus 120 ~~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~-------g--------~~g~--~~~ 176 (379)
T PRK11658 120 PRTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI-------G--------ARGT--AIF 176 (379)
T ss_pred cCCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCeec-------C--------CCCC--EEE
Confidence 5688876 5567899877 88999999999999999999983 22222111 1 1122 345
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCCC-C--------------------hHHHHHHHHHhCCchHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV-S--------------------SQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~-~--------------------~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
||++.-.+++.+-|+++++++.+.+.++.....+.. + ......+.+++.-.+ ...+.
T Consensus 177 Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~q--l~~l~ 254 (379)
T PRK11658 177 SFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQ--LAKLE 254 (379)
T ss_pred eCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHH--HHHHH
Confidence 555433334456799998777766555432211100 0 000011112222111 12244
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-eecCC----ceEEE-EEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGIS-CLKSN----AGLFC-WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-- 219 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~-~~~~~----~g~~~-~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-- 219 (289)
+..++-++..+++.+.|.++++. +..+. ..+++ .+.++..... .+.+++.+.|. +.||.+.+. |.+
T Consensus 255 ~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~L~-~~gI~~~~~--~~~~~ 328 (379)
T PRK11658 255 ALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCG---ISRDALMEALK-ERGIGTGLH--FRAAH 328 (379)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcccc---CCHHHHHHHHH-HCCCCCccc--CcCcc
Confidence 44555555566667777765432 22221 12222 2334321111 12245777665 679876522 111
Q ss_pred ----------C---------CCCeEEEEEe-cCCHHHHHHHHHHHHHHH
Q 044773 220 ----------T---------EPGWFRVCFA-NMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 220 ----------~---------~~~~~Ris~~-~~~~e~l~~~l~~l~~~l 248 (289)
. ....+-+-+. ..++++++..++.+++++
T Consensus 329 ~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 329 TQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0133554442 368999999999998864
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-09 Score=93.98 Aligned_cols=211 Identities=18% Similarity=0.177 Sum_probs=122.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..++. +||+|++...++|- .+ +.+++.++|.+.|+++++|-+|......+...++....
T Consensus 161 l~~~a~~~-kPklIi~G~S~y~~--~~---d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~------------ 222 (399)
T PF00464_consen 161 LEKLAKEH-KPKLIICGASSYPR--PI---DFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY------------ 222 (399)
T ss_dssp HHHHHHHH---SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT------------
T ss_pred HHHHHhhc-CCCEEEECchhccC--cc---CHHHHHHHHHhcCcEEEecccccccceehheecCcccc------------
Confidence 45566666 89997777544431 23 48899999999999999999996432323333332222
Q ss_pred CceEEEecCccccCCCCceEEEEEec-------------CHHHHHHHHhcc-ccCCCCh--HHHHHHHHHhCCchHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSN-------------DDTVVAAATKMS-SFGLVSS--QTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~-------------~~~~~~~~~~~~-~~~~~~~--~~q~~~~~~l~~~~~~~~~ 145 (289)
-+++.+|++|+| +|-|-|.|+++ ++.+.+.+.... +....++ -...+++.++.+. +...
T Consensus 223 -ADvvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea--~~~~ 297 (399)
T PF00464_consen 223 -ADVVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA--LSPE 297 (399)
T ss_dssp -SSEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH--TSHH
T ss_pred -ceEEEeeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc--cCHH
Confidence 238899999999 56667999997 467777776543 2222333 3333344444432 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCT 220 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~ 220 (289)
.++-.++.-++.+.|.+.|.+.|+++.. ...+..+|+++....-. -..+...+++.||.+. |+. -.+.
T Consensus 298 fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~------g~~a~~~Le~~gI~vnkn~iP~d-~~~~ 370 (399)
T PF00464_consen 298 FKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGID------GKEAEKALEEAGIIVNKNTIPGD-RSPF 370 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-------HHHHHHHHHHTTEE-EEE--TTT-STTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccc------hHHHHHHHHhcCeeecccccCCC-CCCC
Confidence 5677777888999999999999998874 23355677888753211 2356667789999985 333 1112
Q ss_pred CCCeEEEEEec-----CCHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-----MSEDTLKLSMQ 242 (289)
Q Consensus 221 ~~~~~Ris~~~-----~~~e~l~~~l~ 242 (289)
.+..+||+... ..++++++.-+
T Consensus 371 ~~sGlRlGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 371 VPSGLRLGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp T-SEEEEESHHHHHTT--HHHHHHHHH
T ss_pred CCCEEEECCHHHHhCCCCHHHHHHHHh
Confidence 24689999843 24556655443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=92.06 Aligned_cols=83 Identities=12% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++|+|+++| |+|...+ +++|.++|+++|++||+|++|+... +.+... ..+ ..+.+.
T Consensus 118 ~~tk~i~~~~---~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~---g~~-------------~~~~~~ 175 (375)
T PRK11706 118 PKTRAIVPVH---YAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRAL---GTI-------------GHIGCF 175 (375)
T ss_pred CCCeEEEEeC---CCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCeee---ecC-------------cCEEEE
Confidence 4689988764 6898876 8899999999999999999998653 222211 111 113334
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHH
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAAT 116 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~ 116 (289)
||+ |.++ +|.+.++++. ++.+.+.+.
T Consensus 176 Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~ 203 (375)
T PRK11706 176 SFHETKNYT-AGEGGALLIN-DPALIERAE 203 (375)
T ss_pred eCCCCcccc-ccCCeEEEEC-CHHHHHHHH
Confidence 444 9997 5766566654 556655443
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-09 Score=90.03 Aligned_cols=219 Identities=17% Similarity=0.220 Sum_probs=132.5
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|+|++.+-.||.+.+.+ ++.|.++|+++++.+|+|.-+...++ .... .++-+|++.
T Consensus 145 ~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl-----~rP~------------~hGADIVvH 204 (426)
T COG2873 145 DENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL-----CRPI------------EHGADIVVH 204 (426)
T ss_pred CcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee-----cchh------------hcCCCEEEE
Confidence 467999999999999999998 99999999999999999999975322 1111 335669999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHH-HhccccCC---------------CChHHHHHHHHHhCCc--------hHH--
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGL---------------VSSQTQYLLSALLSDK--------KFA-- 142 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~---------------~~~~~q~~~~~~l~~~--------~~~-- 142 (289)
|+||.+|..|.-+|=++.....+.... .++..+.. ...+...+-...+.+. .|+
T Consensus 205 S~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~l 284 (426)
T COG2873 205 SATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLL 284 (426)
T ss_pred eecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 999999888998988887544333221 11111100 0011111111122210 000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhc-CCc------------------eecCCceEEEEEecCccccC-CChhhHHHHH
Q 044773 143 --QNYISENKKRLKQRHRKLVSGLEKA-GIS------------------CLKSNAGLFCWVDMRHLLSS-NTFEAEMELW 200 (289)
Q Consensus 143 --~~~~~~~~~~~~~~~~~l~~~l~~~-g~~------------------~~~~~~g~~~~i~~~~~~~~-~~~~~~~~~~ 200 (289)
.+.+.-+.++.-++...+.+.|+.+ .+. +.+...|-.+.+.+...... ..+.+..+++
T Consensus 285 qGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~ 364 (426)
T COG2873 285 QGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLF 364 (426)
T ss_pred hchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHH
Confidence 2224445567777888889999887 221 22222333555666654221 2233444444
Q ss_pred HHHH---HhcCeEEeCCCCCCC-----------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 201 KKIV---YDVKLNISPGSSCHC-----------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 201 ~~ll---~~~gi~v~pg~~f~~-----------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
-.+. +.+-+.+.|.+.... ..++.+|+|++- |+++.++..|++++++
T Consensus 365 s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI---Ed~~DiiaDl~qAl~~ 425 (426)
T COG2873 365 SHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI---EDIDDIIADLEQALEA 425 (426)
T ss_pred HhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc---CCHHHHHHHHHHHHhc
Confidence 4332 233455667665442 125789999996 7788888888887764
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=93.32 Aligned_cols=218 Identities=10% Similarity=0.052 Sum_probs=128.7
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
+|+.+-.+-+||.+-+ +++|.++|+++|+++.+|-+|++.....+ .....+. +...-+.+..+++|.
T Consensus 242 ~vvataGTT~~GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~---~~~~~l~-------gie~aDSit~d~HKw 308 (490)
T PLN02880 242 FLCATVGTTSSTAVDP---LLELGKIAKSNGMWFHVDAAYAGSACICP---EYRHYID-------GVEEADSFNMNAHKW 308 (490)
T ss_pred EEEEecCCCcCcccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhCH---HHHHHhc-------CchhcCEEEECchhh
Confidence 4444444778999988 99999999999999999999987533221 1122222 112345778999999
Q ss_pred cCCCCceEEEEEecCHHH-HHHHHhccccCC------------------C-ChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 94 LGLPGFRVGAIYSNDDTV-VAAATKMSSFGL------------------V-SSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~~-~~~~~~~~~~~~------------------~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
++ ....+|.++.++... ...+.....|.. . .......+...++... .+-+++..+..
T Consensus 309 l~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G--~~g~~~~i~~~ 385 (490)
T PLN02880 309 FL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG--VENLQSYIRNH 385 (490)
T ss_pred cC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhC--HHHHHHHHHHH
Confidence 96 668899999975432 222211111100 0 0011111211222211 23345555555
Q ss_pred HHHHHHHHHHHHhc-CCceecC-CceEEEEEecCccccCCChhh--HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLSSNTFEA--EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~-~~g~~~~i~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
-+..+++.+.+.+. ++++..+ +.++ +.++++.......-.+ ..++.++|.++..+.+.+... .+..++|+++
T Consensus 386 ~~lA~~~~~~l~~~~~~el~~~~~~~i-v~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~---~g~~~lR~~~ 461 (490)
T PLN02880 386 IKLAKEFEQLVAQDSRFEVVTPRIFSL-VCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL---SGKYVLRFAV 461 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCceEE-EEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE---CCEEEEEEEe
Confidence 57778888888776 7887655 4443 4455543211100001 123666666667777765433 3467999999
Q ss_pred ec--CCHHHHHHHHHHHHHHHHHH
Q 044773 230 AN--MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 230 ~~--~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+ +++++++.+++.|.++.++.
T Consensus 462 ~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 462 GAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 54 56799999999998887665
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-08 Score=88.55 Aligned_cols=210 Identities=9% Similarity=0.092 Sum_probs=114.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++ |++|...+ +++|.++|+++|++||+|++|+... +.+..... . + ..++.+.
T Consensus 120 ~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~-~-----------~--~~d~~~~ 179 (380)
T TIGR03588 120 KLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPVGN-C-----------R--YADATVF 179 (380)
T ss_pred CCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeCCC-c-----------c--ccceEEE
Confidence 467887755 46898877 8999999999999999999998531 22211110 0 0 1246666
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHHhccccCCC-C---------------------hHHHHHHHHHhCCchHHHH
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV-S---------------------SQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~-~---------------------~~~q~~~~~~l~~~~~~~~ 144 (289)
|++ |.++.+ .-|+++.+++.+.+.++.....+.. + ...+.-+.+++...++ ..
T Consensus 180 S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL-~~ 256 (380)
T TIGR03588 180 SFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQL-KK 256 (380)
T ss_pred ecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHH-HH
Confidence 765 888632 3488888777776655432111100 0 0000111111111111 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceecC-C---ceEEE-EEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKA-GISCLKS-N---AGLFC-WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-~---~g~~~-~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
+.+..++-+++.+++.+.|.++ ++....+ . ..++. .+.+... .. .+.+++...| ++.||.+.+....-
T Consensus 257 -l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~---~~r~~l~~~L-~~~gI~~~~~~~~~ 330 (380)
T TIGR03588 257 -LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE-FG---CTRKEVFEAL-RAAGIGVQVHYIPV 330 (380)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc-CC---CCHHHHHHHH-HHCCCCcccCCccc
Confidence 3445555566666777777766 3443322 1 12222 2233211 11 1224577766 47799886432110
Q ss_pred ----------CCC---------CCeEEEEEe-cCCHHHHHHHHHHHHHHH
Q 044773 219 ----------CTE---------PGWFRVCFA-NMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 219 ----------~~~---------~~~~Ris~~-~~~~e~l~~~l~~l~~~l 248 (289)
... ...+++.+. .+++++++..++.|++++
T Consensus 331 ~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 331 HLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred ccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 000 155788774 379999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=98.01 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=127.8
Q ss_pred hHHHhhhC-CC-------ccEEEEeCCCCCCccCCCHHHHHHHHHH-HHHcCCEEEEecCCCCCccCCCC---ccCh-hh
Q 044773 2 YQLAQKRH-LK-------VKGVLVTNPSNPLGTTMSRNELNLLVNF-ITEKNIHLISDEIYSGTVFSSPG---FVSI-ME 68 (289)
Q Consensus 2 l~~~~~~~-~~-------~~~i~l~~p~NPtG~~~~~~~l~~l~~~-~~~~~~~li~Dea~~~~~~~~~~---~~~~-~~ 68 (289)
++++++++ ++ .+++++++|+. -|.+.+ +++|++. ++.++ .|++||||.++.--.+. .+.+ .+
T Consensus 265 i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~ 339 (720)
T PRK13578 265 LREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLE 339 (720)
T ss_pred HHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhh
Confidence 45666665 22 69999999965 599999 8888887 67778 99999999876311221 1212 11
Q ss_pred hhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHH--------HHHHhccccCCCChHHHHHHHHHhCCch
Q 044773 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVV--------AAATKMSSFGLVSSQTQYLLSALLSDKK 140 (289)
Q Consensus 69 ~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~--------~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 140 (289)
. +.| ...++++.|.+|.++ +=.+.++|..++..+. +.++........++++...++.+-....
T Consensus 340 ~-------GaD-~p~i~v~QStHKtL~-alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~ 410 (720)
T PRK13578 340 L-------NEN-DPGIFVTQSVHKQQA-GFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAK 410 (720)
T ss_pred c-------CCC-CCCeEEEEChhhcch-hhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2 112 234688999999995 3345566766543322 3344433334355666666666555333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH-Hhc-CCceecCC---------------------------c----------eEE-
Q 044773 141 FAQN-YISENKKRLKQRHRKLVSGL-EKA-GISCLKSN---------------------------A----------GLF- 179 (289)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~~l~~~l-~~~-g~~~~~~~---------------------------~----------g~~- 179 (289)
++.. ..++..+...+....+++.+ +.+ ++++..|+ . +.+
T Consensus 411 ~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~ 490 (720)
T PRK13578 411 MHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYF 490 (720)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCccccccccccccccc
Confidence 3332 34445555555555566655 333 44433211 0 011
Q ss_pred -----EEEecCccc-cCCCh----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 180 -----CWVDMRHLL-SSNTF----EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 180 -----~~i~~~~~~-~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+.+.++... ..... .+...+...|. ++||.+.-...+.. .+-++++ .+.++++.++++|.++-+
T Consensus 491 lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~-e~gI~~E~~d~~~v----L~l~s~g-~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 491 VDPCKLLLTTPGIDAETGEYEDFGIPATILANYLR-ENGIVPEKCDLNSI----LFLLTPA-EDMAKLQQLVAMLARFEK 564 (720)
T ss_pred cCCceEEEEcCCcCcccccccccCccHHHHHHHHH-HcCCEEEecCCCeE----EEEeCCC-CCHHHHHHHHHHHHHHHH
Confidence 222222111 00000 01234555554 55999886554432 4555556 589999999999998855
Q ss_pred H
Q 044773 250 S 250 (289)
Q Consensus 250 ~ 250 (289)
.
T Consensus 565 ~ 565 (720)
T PRK13578 565 H 565 (720)
T ss_pred h
Confidence 3
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.8e-08 Score=87.92 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=137.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc------CCEEEEecCCCCCcc--C-CCCccChhhhhhc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK------NIHLISDEIYSGTVF--S-SPGFVSIMEILKD 72 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~-~~~~~~~~~~~~~ 72 (289)
|++++. +++.+|+++..||.||.+-+ +++|.++|+++ ++++.+|.+|++... . +.....+
T Consensus 179 L~~~i~--~~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~------ 247 (431)
T TIGR01788 179 VVEAVD--ENTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDF------ 247 (431)
T ss_pred HHHHHh--hCCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhc------
Confidence 455554 45788899999999999999 99999999999 999999999986431 1 2111111
Q ss_pred cccccCCCCCceEEEecCccccCCCCceEEEEEecCHH-HHHHHHhcccc---------CCCChHHHHHHHHHhCCchHH
Q 044773 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT-VVAAATKMSSF---------GLVSSQTQYLLSALLSDKKFA 142 (289)
Q Consensus 73 ~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~-~~~~~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~ 142 (289)
...+.+.+..|.+|.+. ....+|+++++++. +.+.+.....+ ...+...-.++..++.-..+.
T Consensus 248 ------~~~~~DSis~s~HK~~~-~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG 320 (431)
T TIGR01788 248 ------RLPRVKSINVSGHKYGL-VYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG 320 (431)
T ss_pred ------CCCCceEEEECchhccC-CCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhc
Confidence 12244567889999862 33448999987653 22322111001 111222212222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC-C
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-H 218 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~ 218 (289)
..-+++..++..++.+++.+.|++. ++++..+ ..+... +++..... .. .+..++.+.|. +.|+.+...... .
T Consensus 321 ~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~-Fr~~~~~~-~~-~~~~~l~~~L~-~~G~~~~~~~~p~~ 396 (431)
T TIGR01788 321 REGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVA-FKLKDDAD-PG-YTLYDLSHRLR-ERGWIVPAYTLPKN 396 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEE-EEeCCCCC-CC-cCHHHHHHHHH-HCCCcccCCCCCCc
Confidence 2335667788888889999999888 5887754 444443 45542111 01 12245666665 679875322211 1
Q ss_pred CCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFA-NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 ~~~~~~~Ris~~-~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+...+|+++- ..+.+.++++++.|++++...
T Consensus 397 ~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 397 AEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 123457899994 468899999999999887653
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=85.90 Aligned_cols=215 Identities=18% Similarity=0.230 Sum_probs=144.5
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-cc------CCCCccChhhhhhccccccCCCCCceEEEecCccccCC
Q 044773 24 LGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VF------SSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGL 96 (289)
Q Consensus 24 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~------~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~ 96 (289)
.|+++|.++++++.++|+++|+.++.|-+--.- .+ .+....++.++..++ ...-+.+..|+||-+|+
T Consensus 197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~------~~~aDsvt~slsKglgA 270 (467)
T TIGR02617 197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRET------YKYADMLAMSAKKDAMV 270 (467)
T ss_pred CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHh------hccCCEEEEEcCCCCCC
Confidence 599999999999999999999999999875321 11 123335666665332 12345778899999998
Q ss_pred C-CceEEEEEecCH---HHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 97 P-GFRVGAIYSNDD---TVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 97 ~-G~r~G~i~~~~~---~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
| | |+++++++ .+.+..+. +.+++..+.-...+++.-|.+.-. .+++..+... .++|.+.|.
T Consensus 271 pvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~-~~yl~~ri~q----v~yl~~~L~ 342 (467)
T TIGR02617 271 PMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWLAYRINQ----VQYLVNGLE 342 (467)
T ss_pred ccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhccc-HHHHHHHHHH----HHHHHHHHH
Confidence 8 7 78888877 44443332 345555666667777766776533 4555554433 366888999
Q ss_pred hcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEe-CCCC-CCCCC---------CCeEEEEEec-
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNIS-PGSS-CHCTE---------PGWFRVCFAN- 231 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~-pg~~-f~~~~---------~~~~Ris~~~- 231 (289)
+.|+.+.. .||.-++++....... ........++..|-.+.||-.. -|+. ++-++ -..+|+++..
T Consensus 343 ~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRr 421 (467)
T TIGR02617 343 EIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRA 421 (467)
T ss_pred hCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccc
Confidence 99999988 8888888876653221 1124445677778778899743 2332 11111 2579999964
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
-|.+.++-..+++..+.+....
T Consensus 422 vyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 422 TYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred cccHhHHHHHHHHHHHHHhhhhh
Confidence 4889999999999998877654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=96.94 Aligned_cols=230 Identities=9% Similarity=0.009 Sum_probs=128.2
Q ss_pred hHHHhhhCCCcc---EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVK---GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~---~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++.++++|+.+ .+++++|+. -|.+.+ +++|++.|+.++ +++||||.++..-.+.++....+.. +.
T Consensus 285 i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~-----ga 353 (714)
T PRK15400 285 IAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSG-----GR 353 (714)
T ss_pred HHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhc-----CC
Confidence 567777777766 789999954 699999 788888888776 7899999876321222221111110 11
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQRH 157 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 157 (289)
+..+.++++.|.+|.++ +=.+.++|..+...-.+.++........++++...++.+-....++.. ..++..+...+..
T Consensus 354 ~~~~~i~vtQStHKtL~-alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a 432 (714)
T PRK15400 354 VEGKVIYETQSTHKLLA-AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERA 432 (714)
T ss_pred CCCCceEEEEchhhccc-chhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 22355688999999984 323344554433211233333333333555666666666554444332 4555555566666
Q ss_pred HHHHHHHHhc-C------CceecCCc----------------e-------------EEEEEecCccccC-----CChhhH
Q 044773 158 RKLVSGLEKA-G------ISCLKSNA----------------G-------------LFCWVDMRHLLSS-----NTFEAE 196 (289)
Q Consensus 158 ~~l~~~l~~~-g------~~~~~~~~----------------g-------------~~~~i~~~~~~~~-----~~~~~~ 196 (289)
..+++.+.+. + +.+..++. | .-+.+.++..... .. .+.
T Consensus 433 ~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~G-ipg 511 (714)
T PRK15400 433 IKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFG-IPA 511 (714)
T ss_pred HHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccC-CCH
Confidence 6677777654 3 33332220 0 0122222210000 01 122
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 197 MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 197 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..+... |+++||.+.-...+.. .+-++++ .+.++++.+++.|.++-+.
T Consensus 512 ~~v~~~-L~e~gI~~E~~d~~~i----Lfl~s~g-~t~~~~~~L~~aL~~f~~~ 559 (714)
T PRK15400 512 SIVAKY-LDEHGIVVEKTGPYNL----LFLFSIG-IDKTKALSLLRALTDFKRA 559 (714)
T ss_pred HHHHHH-HHHcCCEEEecCCCeE----EEEeCCC-CCHHHHHHHHHHHHHHHHh
Confidence 334444 4788999876554332 3444445 5899999999999887443
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=87.67 Aligned_cols=218 Identities=19% Similarity=0.186 Sum_probs=123.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCC--c--cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc----cCCCCccChhhhhhcc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPL--G--TTMSRNELNLLVNFITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDR 73 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPt--G--~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~----~~~~~~~~~~~~~~~~ 73 (289)
+++++. +++++|++++++||+ | ...+ +++|+++|+++|+.+|+|.+.+.+. ++-...+.+.+.+
T Consensus 209 le~aI~--~~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l--- 280 (464)
T PRK04311 209 YEQAIN--ENTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELL--- 280 (464)
T ss_pred HHHhcC--ccCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHH---
Confidence 344444 568999999999983 4 4456 9999999999999999999643221 1101112333322
Q ss_pred ccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhC----CchHH-----
Q 044773 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLS----DKKFA----- 142 (289)
Q Consensus 74 ~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~----~~~~~----- 142 (289)
..+.+++++|.+|.+|.| ..|+++++++ +.+.++.. .....+.-....++...+. .....
T Consensus 281 ------~~GaDiv~fSg~K~LgGp--~~G~i~g~~~-li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~ 351 (464)
T PRK04311 281 ------AAGVDLVTFSGDKLLGGP--QAGIIVGKKE-LIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPT 351 (464)
T ss_pred ------hcCCcEEEecCcccccCC--ceEEEEEcHH-HHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcH
Confidence 236679999999999745 4899999644 44433321 1111122222222222222 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---C--ceecC----------C---ceEEEEEecCccccCCChhhHHHHHHHHH
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKAG---I--SCLKS----------N---AGLFCWVDMRHLLSSNTFEAEMELWKKIV 204 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~g---~--~~~~~----------~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll 204 (289)
.+.+....+.++++.+.+.+.|+++. + ++.+. . .++-+.++... ....++...|
T Consensus 352 l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~-------~~~~~l~~~l- 423 (464)
T PRK04311 352 LRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKD-------RSLEALAARL- 423 (464)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCC-------CCHHHHHHHH-
Confidence 11133344667778888888887652 2 22221 0 11222222111 1123455554
Q ss_pred HhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 205 YDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 205 ~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++....+..- ..++.+.+.+-.+.++|++.+++++++++.
T Consensus 424 r~~~~~i~~r-----~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 424 RLLPPPVIGR-----IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred hcCCCCEEEE-----EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 4544333321 235678888866799999999999988753
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-07 Score=88.56 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=131.4
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
+|+.+-.+-.||.+=+ +++|.++|+++++++.+|.+|.+...-.+. ...++. +...-+-+...++|.
T Consensus 290 ~VvaTaGTT~tGaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~---~r~~~~-------Gie~ADSit~D~HK~ 356 (539)
T PLN02590 290 FICATVGTTSSAAVDP---LVPLGNIAKKYGIWLHVDAAYAGNACICPE---YRKFID-------GIENADSFNMNAHKW 356 (539)
T ss_pred EEEEEeCCCCCcccCC---HHHHHHHHHHhCCeEEEecchhhhhhcChh---hHHHhc-------CCccCCEEEECchhh
Confidence 3344444667787766 999999999999999999999976433222 222322 122334567889999
Q ss_pred cCCCCceEEEEEecCHH-HHHHHHhcccc------------------CCCCh-HHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 94 LGLPGFRVGAIYSNDDT-VVAAATKMSSF------------------GLVSS-QTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~-~~~~~~~~~~~------------------~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
++ ....+|.++.++.. +.+.+..-..| ...+. ....-+...++.. ..+-+++..++.
T Consensus 357 l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~--G~~G~~~~i~~~ 433 (539)
T PLN02590 357 LF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY--GSENLRNFIRDH 433 (539)
T ss_pred cC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 97 66889999987653 22222110000 01111 2222233333322 134456667777
Q ss_pred HHHHHHHHHHHHhc-CCceecC-CceEEEEEecCccccCCC-h-hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLSSNT-F-EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~-~~g~~~~i~~~~~~~~~~-~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
-+..+++.+.+++. ++++..+ .-+..+ ++......... . .-..++.+.+.+...+++.+... .+..++|+++
T Consensus 434 ~~lA~~~~~~l~~~~~fel~~~~~l~iVc-Fr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~---~g~~~lR~~i 509 (539)
T PLN02590 434 VNLAKHFEDYVAQDPSFEVVTTRYFSLVC-FRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL---SGKFVLRFAV 509 (539)
T ss_pred HHHHHHHHHHHhcCCCeEEecCCceEEEE-EEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE---CCEEEEEEEe
Confidence 77888899999877 6887654 444333 44432111100 0 01134666666555555554432 3456899999
Q ss_pred ec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 230 AN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 230 ~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+ +++++++.+++.|.+..++..+
T Consensus 510 ~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 510 GAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 55 6899999999999998777665
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-09 Score=83.06 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++++++++|+||+|...+ +++|.++|+++|+++|+|++|..+...... .. . ...+.++++.
T Consensus 90 ~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~---~---------~~~~~d~~~~ 153 (170)
T cd01494 90 KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG-VL---I---------PEGGADVVTF 153 (170)
T ss_pred cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc-cc---c---------ccccCCEEEE
Confidence 457899999999999999988 588899999999999999999976443322 01 1 1225668899
Q ss_pred cCccccCCCCceEEEEEe
Q 044773 89 SLSKDLGLPGFRVGAIYS 106 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~ 106 (289)
|++|.+|. .++|++++
T Consensus 154 s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 154 SLHKNLGG--EGGGVVIV 169 (170)
T ss_pred EcccccCC--CceEEEEe
Confidence 99999974 67999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-07 Score=89.43 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=134.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++.+|++++|++-++. ++++++|+++++++|+.+++|-++.- .. .......+ .+-++++++
T Consensus 640 ~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv~vDgA~~~-a~--~~l~~Pg~------------~GADi~~~s 701 (954)
T PRK12566 640 DRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQVYMDGANLN-AQ--VGLARPAD------------IGADVSHMN 701 (954)
T ss_pred CCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEEEEEeeChh-hc--cCCCChhh------------cCCCEEEec
Confidence 46778888888765433 45699999999999999999999962 11 11121222 256799999
Q ss_pred CccccCC----CCceEEEEEecCHHHHHHHHhcc------------cc--CC-CChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 90 LSKDLGL----PGFRVGAIYSNDDTVVAAATKMS------------SF--GL-VSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 90 ~sK~~g~----~G~r~G~i~~~~~~~~~~~~~~~------------~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
++|+|+. +|.-+|.+.+. +.+...+.... .. .+ .+......+..++.... .+ +++..
T Consensus 702 ~HKtf~~P~G~GGP~vG~iav~-~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG--~e-Lk~aa 777 (954)
T PRK12566 702 LHKTFCIPHGGGGPGMGPIGVR-AHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG--PQ-LADAS 777 (954)
T ss_pred CCcccCcCccCCCCccchhhhh-hhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC--HH-HHHHH
Confidence 9999852 24446666653 33333333211 00 10 11122233333343322 33 67777
Q ss_pred HHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.....+.+++.+.|.+. ++.+.++++.++ ..+++........ .+..++.+.|+ ++||...- ..| +..+.+||
T Consensus 778 ~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g-~~~~dvakRL~-d~Gihapt-~~f--Pv~~~LmI 852 (954)
T PRK12566 778 EVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTG-ISEEDVAKRLM-DYGFHAPT-MSF--PVPGTLMV 852 (954)
T ss_pred HHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccC-CCHHHHHHHHH-HCCcEEeE-Eee--ccCCEEEE
Confidence 77778889999999774 444433222211 2234432211111 22356888888 88997543 333 23778999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDSITTTLHNQS 259 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~~ 259 (289)
++.. .+.+|+|+++++|..+.++...-.....
T Consensus 853 epTE~eskeEIDrf~eAL~~I~~e~~~v~~g~~ 885 (954)
T PRK12566 853 EPTESESKAELDRFVEAMLSIRAEIGKVQEGNW 885 (954)
T ss_pred EeeeeCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9954 7999999999999999998765443333
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-07 Score=88.75 Aligned_cols=227 Identities=8% Similarity=0.004 Sum_probs=125.3
Q ss_pred hHHHhhhCCCc---cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEE-EEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHLKV---KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHL-ISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~~~---~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~l-i~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++++|+. +++++++|+. -|.+.+ +++|++.| ++.+ ++||||.++..-.+.+.+...+...
T Consensus 285 I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~----- 352 (713)
T PRK15399 285 IEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGE----- 352 (713)
T ss_pred HHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCC-----
Confidence 56677777665 6899999954 699999 66677666 5655 6999998763212222221222110
Q ss_pred CCCCC-ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHH
Q 044773 78 TEVWN-RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQ 155 (289)
Q Consensus 78 ~d~~~-~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~ 155 (289)
...+ .++.+.|.+|.++ +=.+.++|.++...-.+.++........++++...++.+-....+++. ..++..+...+
T Consensus 353 -~~aD~~i~~tQStHKtL~-alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~ 430 (713)
T PRK15399 353 -RVPGKVIFETQSTHKMLA-AFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVE 430 (713)
T ss_pred -CCCCeeeeeeeehhcccc-ccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 0112 3355889999995 445567777754322234444333343556666666666554444332 44555555556
Q ss_pred HHHHHHHHHHhc-C------CceecCC----c-------------------e------EEEEEecCcccc-----CCChh
Q 044773 156 RHRKLVSGLEKA-G------ISCLKSN----A-------------------G------LFCWVDMRHLLS-----SNTFE 194 (289)
Q Consensus 156 ~~~~l~~~l~~~-g------~~~~~~~----~-------------------g------~~~~i~~~~~~~-----~~~~~ 194 (289)
....+++.+.+. + +++..++ . + .-+.+..+.... ... .
T Consensus 431 ~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~G-i 509 (713)
T PRK15399 431 RALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEG-I 509 (713)
T ss_pred HHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCC-C
Confidence 666666666554 2 2333221 0 0 012222221000 001 1
Q ss_pred hHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 195 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 195 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+...+... |+++||.+.-...+.. .+-++++ .+.++++.+++.|.++-+
T Consensus 510 ~g~~l~~~-L~e~gI~~E~~d~~~v----L~l~s~g-~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 510 PAALVAKF-LDERGIVVEKTGPYNL----LFLFSIG-IDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred CHHHHHHH-HHHcCCEEEecCCCeE----EEEeCCC-CCHHHHHHHHHHHHHHHH
Confidence 22345554 4788999886554432 3444555 589999999999988744
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-07 Score=83.41 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=122.7
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-----CEEEEecCCCCCccCCCCccChhhhhhcccc
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN-----IHLISDEIYSGTVFSSPGFVSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~-----~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 75 (289)
|++++..+. ++.+|+++..+|+||.+-+ +++|.++|+++| +++.+|.+|.+....-....+....
T Consensus 151 L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~------ 221 (374)
T PLN03032 151 LERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF------ 221 (374)
T ss_pred HHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC------
Confidence 456665432 4667777778999999988 899999999996 5899999998642210000000111
Q ss_pred ccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc-------CCCCh--HHHHHHHHHhCCchHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-------GLVSS--QTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-------~~~~~--~~q~~~~~~l~~~~~~~~~~ 146 (289)
....+.+..|.+|.+| ....+|.++.+++.+.. +.....| ...+. .....+...+.... .+-+
T Consensus 222 ----~~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~-~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G--~~g~ 293 (374)
T PLN03032 222 ----RKPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKA-LSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKG--YRGI 293 (374)
T ss_pred ----CcCCcEEEECcccccC-CCcCeEEEEEEchhhHh-hccCCcccCCCCCcccCCCchHHHHHHHHHHHHhC--HHHH
Confidence 1134567889999887 44669999997655432 2211111 11222 22333333333322 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 147 SENKKRLKQRHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++..+..-++.+++.+.|++.++++. .|.. ..+.+.-+. . +. +.+...+.+. +..+
T Consensus 294 ~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~-~~V~f~~~~---~-------~~---~~~~w~l~~~---------~~~~ 350 (374)
T PLN03032 294 KRDVQHCMRNAHYLKDRLTEAGLTCRLNELS-STVVFERPM---D-------EA---FIKKWQLACE---------GDIA 350 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEECCCc-eEEEEcCCC---c-------Hh---Hhheeeeccc---------CCEE
Confidence 66777778888899999988887754 4544 334343331 1 11 2223334322 2378
Q ss_pred EEEEec-CCHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
|+++.. ++.+.++++++.|++
T Consensus 351 hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 351 HVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEEECCCCCHHHHHHHHHHHhc
Confidence 999954 678889998887764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-07 Score=85.93 Aligned_cols=216 Identities=14% Similarity=0.117 Sum_probs=121.7
Q ss_pred CccEEEEe--CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVT--NPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~--~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++.++++ ..++.||.+-+ +++|+++|+++|+++.+|.+|++...-.. ....++. +...-+.+..
T Consensus 263 g~~~~~vvataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~---~~r~~l~-------gle~aDSit~ 329 (522)
T TIGR03799 263 NIKPLAIVGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSN---TYRHLLK-------GIERADSVTI 329 (522)
T ss_pred CCCcEEEEEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCH---HHHHHhc-------CchhCCEEEE
Confidence 34444443 33678999988 99999999999999999999985422111 1222222 1124467889
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcccc-------------CCCChHHH-HHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-------------GLVSSQTQ-YLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-------------~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+.+|.++ ....+|.++.++....+.+.....| ..++.... ..+...++... ..-+++..++..
T Consensus 330 d~HK~l~-~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG--~~G~~~ii~~~~ 406 (522)
T TIGR03799 330 DAHKQLY-VPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG--RKGYELLIDQSI 406 (522)
T ss_pred ChhhcCC-cCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 9999876 4467899999776554433321111 11222111 12333333221 333677778888
Q ss_pred HHHHHHHHHHHhc-CCceecCC-ceEEEEEec-CccccC-------------CChhhH--HHHHHHHHHhcCeEEeCCC-
Q 044773 155 QRHRKLVSGLEKA-GISCLKSN-AGLFCWVDM-RHLLSS-------------NTFEAE--MELWKKIVYDVKLNISPGS- 215 (289)
Q Consensus 155 ~~~~~l~~~l~~~-g~~~~~~~-~g~~~~i~~-~~~~~~-------------~~~~~~--~~~~~~ll~~~gi~v~pg~- 215 (289)
+..+++.+.|.+. ++++..+. -+..+ ++. +..... ....+. ..+.+.+.++..+++.+..
T Consensus 407 ~la~~l~~~L~~~~~~el~~~p~l~iv~-Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l 485 (522)
T TIGR03799 407 EKAKYFADLIQQQPDFELVTEPELCLLT-YRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRL 485 (522)
T ss_pred HHHHHHHHHHhhCCCeEEecCCCccEEE-EEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 8889999999887 78876543 44443 342 321110 000011 2344444444333444222
Q ss_pred ---CCCCCCCCeEEEEEec--CCHHHHHHHHHH
Q 044773 216 ---SCHCTEPGWFRVCFAN--MSEDTLKLSMQR 243 (289)
Q Consensus 216 ---~f~~~~~~~~Ris~~~--~~~e~l~~~l~~ 243 (289)
.+...+...+|+++.+ +++++++.+++.
T Consensus 486 ~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 486 TPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred cccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 1111123569999965 578888887653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-08 Score=86.27 Aligned_cols=222 Identities=17% Similarity=0.195 Sum_probs=135.0
Q ss_pred cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCcc
Q 044773 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSK 92 (289)
Q Consensus 13 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK 92 (289)
+.|++.--.-+||.+.+ +.+|+++..+|...+|+||.|+.... |.......+...- +..+.+++++|++-
T Consensus 235 rfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~l-g~~GrGvteH~~v------~~~~iDiv~~sm~~ 304 (467)
T KOG1358|consen 235 RFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVL-GKTGRGVTEHFGV------PITDIDIVTASMET 304 (467)
T ss_pred EEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccc-cccCccccccCCC------Cccceeeeeecccc
Confidence 45555555667999999 99999999999999999999985444 3333344444332 34677899999999
Q ss_pred ccCCCCceEEEEEecCHHHHHHHH-hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 044773 93 DLGLPGFRVGAIYSNDDTVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GIS 170 (289)
Q Consensus 93 ~~g~~G~r~G~i~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 170 (289)
+++..| |+.++ +..+.+.-+ ...++-..-++....+.++++.... .++--++.+.++.....+.+.|... ++.
T Consensus 305 alas~G---gFc~G-~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i-~~~~p~~~~~L~~k~~~~H~~l~~~s~~~ 379 (467)
T KOG1358|consen 305 ALASGG---GFCAG-KSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI-EEWNPEIVQPLRAKVAKFHAALSSNSGFI 379 (467)
T ss_pred cccccC---ceeec-ceeeEeeeeccccceeeeccCchhhhhhHHHHHHH-HhhCcchhhhhhccccccchhhhcCCceE
Confidence 998777 88888 344332222 1222221222333333333333332 3334445666777666777777765 566
Q ss_pred eecCCceEEEEEecCccccCC--ChhhHHHHHHHHHHhcCeEEeCCCCCC----CCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSN--TFEAEMELWKKIVYDVKLNISPGSSCH----CTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
+....-+..+.+.+....... ...--.+++..++.+ ++.+.....-- ...+..+||++.. ++++|++.+.+.
T Consensus 380 v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ 458 (467)
T KOG1358|consen 380 VSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAEL 458 (467)
T ss_pred EecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 665554555556666532221 001112366666655 77765332211 1234579999954 899999999999
Q ss_pred HHHHHHH
Q 044773 244 LKAFVDS 250 (289)
Q Consensus 244 l~~~l~~ 250 (289)
+++....
T Consensus 459 ik~~~~~ 465 (467)
T KOG1358|consen 459 IKEVASA 465 (467)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-06 Score=74.54 Aligned_cols=219 Identities=19% Similarity=0.191 Sum_probs=142.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++.+..+ +++++++++-..-||..-+ -++.+-++|++|++++++|.+-+ .++.++.- |.+
T Consensus 134 i~~~lsqh-~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaS---lggt~F~m-------------Dew 194 (385)
T KOG2862|consen 134 ITEKLSQH-KPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVAS---LGGTEFEM-------------DEW 194 (385)
T ss_pred HHHHHHhc-CCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhh---cCCcccee-------------hhh
Confidence 45677777 8999999988778888754 46677789999999999999988 44555432 566
Q ss_pred CceEEEecCccccCCC-CceEEEEEecCHHHHHHHHh-------------ccccC-----------CCChHHHHHHHHHh
Q 044773 82 NRVHIVYSLSKDLGLP-GFRVGAIYSNDDTVVAAATK-------------MSSFG-----------LVSSQTQYLLSALL 136 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~-------------~~~~~-----------~~~~~~q~~~~~~l 136 (289)
+.++....--|++|+| | ++-|..++..+.....+ +..++ +++....+.+-++|
T Consensus 195 gVDvaytgSQKaL~aP~G--LsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL 272 (385)
T KOG2862|consen 195 GVDVAYTGSQKALGAPAG--LSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAAL 272 (385)
T ss_pred cccEEEecchhhcCCCCC--cceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHH
Confidence 7778777778999865 4 34455544333322211 01111 12334444444444
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
... .++-+++.-++.++..++++..|+++|++....+- .-.-.+.++...+. -+++.++...+++.+.
T Consensus 273 ~~I--~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw------~dVv~~~~~~~~vei~ 344 (385)
T KOG2862|consen 273 ALI--AEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDW------KDVVAYAMSHYVVEIG 344 (385)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCH------HHHHHHHHHhcCEEec
Confidence 432 14447788888999999999999998875432221 01122455554443 4578888777777765
Q ss_pred CCCCCCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
.|- ++.....+||.+ +. -+.+.++..++.|+.++...
T Consensus 345 ggl--g~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 345 GGL--GPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred ccc--CCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence 443 455678999999 43 46788888888888777653
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=90.03 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=72.1
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|. .++.+.+++|.++|+++|+++|+||++.+++.+|..+.. +... ...-+.
T Consensus 177 ~iaa-vivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~--~~~g-----------v~PDiv 242 (339)
T PF00202_consen 177 EIAA-VIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFAS--EHYG-----------VDPDIV 242 (339)
T ss_dssp GEEE-EEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGH--HHHT-----------SSSSEE
T ss_pred cEEE-EEEeccccccCccccccchhhehcccccccccceecccccccccccCCccce--eccc-----------ccCccc
Confidence 4555 55556 444454 457789999999999999999999999998777764321 1111 111245
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCC
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~ 138 (289)
+++|.++ .|+++|.+++++ .+.+.+.. ..+.+..+++...++.+.|+.
T Consensus 243 ~~gK~l~-gG~p~sav~~~~-~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 243 TFGKGLG-GGLPISAVLGSE-EIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp EEEGGGG-TTSSEEEEEEEH-HHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred ccccchh-hhhhcccccccc-hhhccccccccccccccchHhhhhhhhHHHh
Confidence 5679998 779999999954 44443322 223333677777777666664
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.7e-07 Score=76.00 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=129.5
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++...+. ..+.+.++++|..--|.+.+ -++++++|+++++.+++..+|.- |..+.+..++
T Consensus 146 iee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs~ke~----------- 207 (382)
T COG1103 146 IEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVSGKEI----------- 207 (382)
T ss_pred HHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----cccccccccc-----------
Confidence 45555554 35778899999655677655 89999999999999999999984 5555665555
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-c--------cCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-S--------FGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~--------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
+-+++++|-+|+|. ..-++|.+..+. ...+.+-+.+ . ...+++ .-..+..++.+-....+-.++- +
T Consensus 208 -g~DFiVgSGHKsmA-As~PiGvl~~~e-E~ae~V~r~Sg~~~~~KEvellGCT~-rGapivTlmASfP~V~eRVkrW-d 282 (382)
T COG1103 208 -GADFIVGSGHKSMA-ASAPIGVLAMSE-EWAEIVLRRSGRAFPKKEVELLGCTV-RGAPIVTLMASFPHVVERVKRW-D 282 (382)
T ss_pred -CCCEEEecCccchh-ccCCeeEEeehh-HHHHHHHhhcccccccceeeeecccc-cCchHHHHHhcCHHHHHHHHHH-H
Confidence 45599999999997 555899999854 4444333222 1 121332 2222333333322111111111 1
Q ss_pred HHHHHHHHHHHHHHhcC-Ccee--cCCceEEEEEecCcc--ccCCChhhHHHHHHHHHHhcCeE-EeCCCCCCCCCCCeE
Q 044773 152 RLKQRHRKLVSGLEKAG-ISCL--KSNAGLFCWVDMRHL--LSSNTFEAEMELWKKIVYDVKLN-ISPGSSCHCTEPGWF 225 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g-~~~~--~~~~g~~~~i~~~~~--~~~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~~ 225 (289)
.--++.+++.+.|+++| +.-. .|...=.+.+..|.. +.+.......-+...| ++.||. ++||. ..++
T Consensus 283 eEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~EL-K~RgI~GI~~G~------Tk~~ 355 (382)
T COG1103 283 EEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEEL-KKRGIHGIQPGQ------TKYF 355 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHH-HhcCccccccCc------eeEE
Confidence 12234567888888873 4322 233222232333321 0000000001134444 455765 45543 4689
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+|+-.++.|+++..+++++++++++
T Consensus 356 K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 356 KLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred EEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 99995479999999999999999875
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=86.46 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=133.0
Q ss_pred hHHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
|++.+.+ ..++++|++++|+| +|..-+ ++++|.++|+++|..+++|-++..- ..+.. ... .
T Consensus 618 L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~a-l~~l~--~Pg------------~ 679 (939)
T TIGR00461 618 LKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNA-QVGLT--SPG------------D 679 (939)
T ss_pred HHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhh-CCCCC--Ccc------------c
Confidence 3455543 24789999999999 687643 4999999999999999999999631 11111 111 3
Q ss_pred CCceEEEecCccccC----CCCceEEEEEecCHHHHHHHHhc------------cccC-----CCCh-HHHHHHHHHhCC
Q 044773 81 WNRVHIVYSLSKDLG----LPGFRVGAIYSNDDTVVAAATKM------------SSFG-----LVSS-QTQYLLSALLSD 138 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~~~------------~~~~-----~~~~-~~q~~~~~~l~~ 138 (289)
.+-+++++|.+|+|+ .+|--+|.+.+++. +..++... .+.. +.++ .....+..++..
T Consensus 680 ~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~ 758 (939)
T TIGR00461 680 LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKM 758 (939)
T ss_pred cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHH
Confidence 366799999999775 34566899998643 22221100 0000 1111 112223333332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC-CceE-E--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKS-NAGL-F--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~-~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
.. .+-+++..+..-.+.+++.+.|.+ ++++.-+ ..+. + +.++++....... ....+++++|+ ++|+.-.-
T Consensus 759 lG--~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g-~~~~dIakrL~-d~G~hapt- 832 (939)
T TIGR00461 759 MG--NEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTG-IEAIDVAKRLQ-DYGFHAPT- 832 (939)
T ss_pred HC--HHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcC-CCHHHHHHHHH-hCCeeccc-
Confidence 11 333677777777888999999987 4444332 2222 1 3345542111111 22356888887 66997432
Q ss_pred CCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 215 SSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 215 ~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..|.. .+.+-|.+.- .+.+|||++++.+.++-++...
T Consensus 833 ~~~pv--~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 833 LSFPV--PGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred cCCcc--CCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 33322 3344444432 5899999999999888777655
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-07 Score=76.03 Aligned_cols=224 Identities=12% Similarity=0.151 Sum_probs=134.7
Q ss_pred HhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 5 AQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
.+.+..++.+.+-.+-+.=.|+++|+. ..+.+++..+.+|-+.|.||++.+++.-|..++++. .++.
T Consensus 203 ~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq------------~y~f 270 (452)
T KOG1403|consen 203 QLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQ------------TYNF 270 (452)
T ss_pred HHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhh------------hhcc
Confidence 334433444433333345567777655 789999999999999999999998766566555432 3355
Q ss_pred eEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+.-+-++.|.+| .|.+++.++. .+.+.+.+.. +++++ .|+.+.++..+.+..-+ ++.+. .+.++.-+
T Consensus 271 iPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyG-GnPVsCAv~laVm~v~e--~E~Lq---~ha~~vG~ 342 (452)
T KOG1403|consen 271 IPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYG-GNPVSCAVGLAVMRVCE--DENLQ---EHAQQVGE 342 (452)
T ss_pred ccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhccC-CCchhHHHHHHHHHHHh--hhhHH---HHHHHHHH
Confidence 556788999999 9999999999 4556665543 34454 67777666555554221 12222 22333333
Q ss_pred HHHHHHHhc--CCceecC--CceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-c
Q 044773 159 KLVSGLEKA--GISCLKS--NAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-N 231 (289)
Q Consensus 159 ~l~~~l~~~--g~~~~~~--~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~ 231 (289)
.|...|.++ ..++.+. .-|.|+-+++-+.-.. +....+.-+...|.+.++|.+..-. +..+-+.|-+. .
T Consensus 343 ~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG----Ph~NilKiKPPmC 418 (452)
T KOG1403|consen 343 KLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG----PHRNILKIKPPMC 418 (452)
T ss_pred HHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC----CCCceeecCCCcc
Confidence 344444333 2334332 3367777776653221 2223333466677778888887421 23456666652 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~ 252 (289)
-++++.++.+..|.+++..+.
T Consensus 419 Fneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 419 FNEENADEFVLGLDEILTVME 439 (452)
T ss_pred cChhhHHHHHHHHHHHHHHHH
Confidence 467888888887777766443
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-07 Score=80.53 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=129.0
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
..+++++.+.+++..-.||..++ +++++. ++.+|+|.+.+- +..+.++.++ + +.
T Consensus 141 ~~~~~~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss~----g~~pidv~~~------------~--v~ 194 (365)
T PLN02452 141 ELTPDAKFVHICANETIHGVEFK--DYPDVG------NVPLVADMSSNF----LSKPVDVSKY------------G--VI 194 (365)
T ss_pred CCCCCCcEEEECCCCCCCcEecC--cccccC------CCeEEEECCccc----cCcccCHHHc------------C--EE
Confidence 34457888888876668899754 254443 389999999983 3333444433 3 34
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHH--HHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQN--YISENKK 151 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~ 151 (289)
..|..|.+|.+| +|.++++++.+..... ....+++++....+++..+++. +.+ -++.+.+
T Consensus 195 ~~saqK~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~---l~~~gGl~~~~~ 269 (365)
T PLN02452 195 YAGAQKNVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFED---LLAQGGLKAMEK 269 (365)
T ss_pred EEecccccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHH---HHHccCHHHHHH
Confidence 469999999778 7888886655533111 1111223333444444444442 233 2788889
Q ss_pred HHHHHHHHHHHHHHhc-CCcee--cC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 152 RLKQRHRKLVSGLEKA-GISCL--KS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~-g~~~~--~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+.+++.+++++.|++. |+... .+ .+.+.+.+.++... ...++...+ ++.|+...+|..-- +.+|
T Consensus 270 r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~------~~~~f~~~~-~~~g~~~~~G~r~~----gg~R 338 (365)
T PLN02452 270 RNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE------LEAEFVKEA-AKAGMVQLKGHRSV----GGMR 338 (365)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch------hHHHHHHHH-HHCCCcccCCcccc----CceE
Confidence 9999999999999986 66111 11 23445556655421 223466655 58899999987532 2399
Q ss_pred EEE-ecCCHHHHHHHHHHHHHHHHH
Q 044773 227 VCF-ANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~-~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+|+ ..++.++++.+++.++++.++
T Consensus 339 ~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 339 ASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EECcCCCCHHHHHHHHHHHHHHHHh
Confidence 999 448999999999999988765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-06 Score=87.39 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=129.4
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
|++++..+ .++.+|++++|++-.+...+ +++|+++|+++|+++++|.++..... +.. ... .
T Consensus 630 L~~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~-~l~--~pg------------~ 691 (954)
T PRK05367 630 LRAKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQV-GLA--RPG------------D 691 (954)
T ss_pred HHHHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhcc-CCC--Chh------------h
Confidence 34445442 35778889998765443445 99999999999999999999963211 111 111 2
Q ss_pred CCceEEEecCccccC----CCCceEEEEEecCHHHHHHHHhcc--------ccCCCC--hHHHH----HHHHHhCCchHH
Q 044773 81 WNRVHIVYSLSKDLG----LPGFRVGAIYSNDDTVVAAATKMS--------SFGLVS--SQTQY----LLSALLSDKKFA 142 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~~~~--------~~~~~~--~~~q~----~~~~~l~~~~~~ 142 (289)
.+-++++++++|+|+ .+|-.+|.+.+++ .+...+.... ..+..+ +..+. .+..++....
T Consensus 692 ~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G-- 768 (954)
T PRK05367 692 IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMG-- 768 (954)
T ss_pred cCCCEEEecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHC--
Confidence 245688999999975 2334488888853 2222221110 011111 12111 1122222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
.+-+++..+..-.+.+++.+.|.+. .+.+..+.+.++ ..+++........ ....++++.|. ++|+...- ..|.
T Consensus 769 ~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g-~~~~di~krL~-d~G~~~~t-~~~p- 844 (954)
T PRK05367 769 AEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG-ITVDDIAKRLI-DYGFHAPT-MSFP- 844 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC-CCHHHHHHHHH-HCCCeEee-cCCc-
Confidence 3335555565667888899999774 333332222110 2233321111001 12256888885 77998654 3332
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
..+.++|++.. .+.+|+|++++.|+.+.++...
T Consensus 845 -v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 845 -VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred -cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 36789999954 7999999999999998887665
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=81.31 Aligned_cols=208 Identities=19% Similarity=0.198 Sum_probs=113.6
Q ss_pred CCCccEEEEeCCCCCC--c--cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc----cCCCCccChhhhhhccccccCCC
Q 044773 9 HLKVKGVLVTNPSNPL--G--TTMSRNELNLLVNFITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPt--G--~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~----~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++|++++++||+ | .+.+ +++|+++|+++|+.+++|.....+. ++-...+.+.+.. .
T Consensus 209 ~~~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~---------~ 276 (454)
T TIGR00474 209 TENTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVI---------A 276 (454)
T ss_pred CcCCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHh---------H
Confidence 3679999999999995 6 3566 9999999999999999997633210 1000111122221 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHH----HHHHHhCCch-HH----HHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQY----LLSALLSDKK-FA----QNYISEN 149 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~----~~~~~l~~~~-~~----~~~~~~~ 149 (289)
.+.++++.|.+|.+|.| ..|+++++++.+ +.++... ....+.-.... ++-.++.... ++ .+.+...
T Consensus 277 ~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i-~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~ 353 (454)
T TIGR00474 277 AGVDLVTFSGDKLLGGP--QAGIIVGKKELI-ERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQS 353 (454)
T ss_pred cCCCEEEecCccccCCC--eEEEEEECHHHH-HhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccC
Confidence 35568999999999645 479999965443 3222110 00011111112 2222222111 10 1223334
Q ss_pred HHHHHHHHHHHHHHHHhc---CC--ceecCC----c---------eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKA---GI--SCLKSN----A---------GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~---g~--~~~~~~----~---------g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
.+..+++.+.+.+.|++. ++ ++.+.. | ++-+.++... ....++...| ++....+
T Consensus 354 ~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~-------~~~~~l~~~l-r~~~~~i 425 (454)
T TIGR00474 354 PEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG-------LSAEKLEARL-RELPPPI 425 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC-------CCHHHHHHHH-hcCCCCE
Confidence 456667788888888763 22 222222 1 2222232221 1123455554 4655444
Q ss_pred eCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l 244 (289)
..- ..++.+.+.+-.+.++|++.+++++
T Consensus 426 i~r-----~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 426 IGR-----IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred EEE-----EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 321 2356788888667889999888775
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-06 Score=77.70 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=56.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++++ .|... ++++|.++|+++|++||+|++|+... +.|....+ + + ++.+.
T Consensus 158 ~~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~---~------------g-d~~~f 215 (438)
T PRK15407 158 PKTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGT---F------------G-DIATL 215 (438)
T ss_pred cCCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhhcCCeeeec---c------------C-ceEEE
Confidence 57899999876 34333 58999999999999999999998432 22221111 1 1 24445
Q ss_pred cC--ccccCCCCceEEEEEecCHHHHHHHHhc
Q 044773 89 SL--SKDLGLPGFRVGAIYSNDDTVVAAATKM 118 (289)
Q Consensus 89 s~--sK~~g~~G~r~G~i~~~~~~~~~~~~~~ 118 (289)
|| +|.+. .|- -|+++++++.+.+.++.+
T Consensus 216 Sf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~ 245 (438)
T PRK15407 216 SFYPAHHIT-MGE-GGAVFTNDPLLKKIIESF 245 (438)
T ss_pred eCCCCCCcc-ccC-ceEEEECCHHHHHHHHHH
Confidence 55 46664 222 299999988887766544
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-05 Score=71.37 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=62.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-CCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+|+++. +++|+|+..+- -|...+ +++|.++|++||++||+|.+++.... .|....++
T Consensus 115 ie~aIt--~~tKAIipVhl---~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~-------------- 172 (374)
T COG0399 115 IEAAIT--PRTKAIIPVHL---AGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF-------------- 172 (374)
T ss_pred HHHHcc--cCCeEEEEehh---ccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecCcccccc--------------
Confidence 455555 45999888865 466666 99999999999999999999984322 23322221
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM 118 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~ 118 (289)
.+..++-.=-+|.++.. -=|.++++++.+.+.++.+
T Consensus 173 Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~l 208 (374)
T COG0399 173 GDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSL 208 (374)
T ss_pred cceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHH
Confidence 11223333446888733 3399999999988877654
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-06 Score=75.14 Aligned_cols=206 Identities=15% Similarity=0.119 Sum_probs=124.7
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCcccc
Q 044773 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDL 94 (289)
Q Consensus 15 i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~ 94 (289)
|++++.--.||...+ ++++...+ +++++|+|.+-+ +++.+. .+ .+.++++.|.-|.+
T Consensus 131 v~~vhnETSTGv~np---v~~i~~~~--~~~lliVDavSs---~g~~~l-~~--------------d~iDv~~tgsQK~L 187 (374)
T TIGR01365 131 VVFTWNGTTSGVRVP---NGDFIPAD--REGLTICDATSA---AFAQDL-DY--------------HKLDVVTFSWQKVL 187 (374)
T ss_pred EEEecCCCchheecc---cccccccc--CCCcEEEEccch---hcCCCC-Ch--------------hHCcEEEEechhcc
Confidence 566666567899988 44444221 489999999988 434442 22 13568899999999
Q ss_pred CCCCceEEEEEecCHHHHHHHH--------hc-------------cccCCCChHHHHHHHHHhCCchHHHHH--HHHHHH
Q 044773 95 GLPGFRVGAIYSNDDTVVAAAT--------KM-------------SSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKK 151 (289)
Q Consensus 95 g~~G~r~G~i~~~~~~~~~~~~--------~~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~ 151 (289)
++|+ .+|+++.+++.+..... .+ ....+.+++...++..++....++.++ ++.+.+
T Consensus 188 ~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~ 266 (374)
T TIGR01365 188 GGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIA 266 (374)
T ss_pred CCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 8554 36677776555533211 00 001123334444444444433333332 788889
Q ss_pred HHHHHHHHHHHHHHhcC-CceecC--C--ceEEEEEecCcc-cc--C-CChhh-HHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 152 RLKQRHRKLVSGLEKAG-ISCLKS--N--AGLFCWVDMRHL-LS--S-NTFEA-EMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g-~~~~~~--~--~g~~~~i~~~~~-~~--~-~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+++++++.+++.++++| +..... + +.....+.++.+ .+ + +.-.+ ..++...+. ++||.+.+|.+- ..
T Consensus 267 Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~i~~G~~~--~~ 343 (374)
T TIGR01365 267 RADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLE-KEGVAYDIGSYR--DA 343 (374)
T ss_pred HHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHH-HCCEEEeccccc--cC
Confidence 99999999999999998 665542 1 222233444332 11 0 00011 234555554 669999887653 22
Q ss_pred CCeEEEEE-ecCCHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCF-ANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 222 ~~~~Ris~-~~~~~e~l~~~l~~l~~~ 247 (289)
...|||+. +.+++++++.+++.|.=+
T Consensus 344 ~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 344 PSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 46899999 668999999999888543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-06 Score=82.95 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=118.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++-++++.+| |-+|.+.+ +++|+++|+++|+++++|-.+..+.. .. +.. ..+-++++++.
T Consensus 206 ~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~--l~--~pg------------e~GaDi~vgs~ 265 (954)
T PRK05367 206 DVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTL--LT--PPG------------EMGADIAVGSA 265 (954)
T ss_pred cEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC--CC--Chh------------hcCCCEEEeeC
Confidence 3445566666 56899987 99999999999999999876633212 11 222 33667999999
Q ss_pred ccc-----cCCCCceEEEEEecCHHHHHHHH-hcc-------------------------ccCCCChH---HHHHHHHHh
Q 044773 91 SKD-----LGLPGFRVGAIYSNDDTVVAAAT-KMS-------------------------SFGLVSSQ---TQYLLSALL 136 (289)
Q Consensus 91 sK~-----~g~~G~r~G~i~~~~~~~~~~~~-~~~-------------------------~~~~~~~~---~q~~~~~~l 136 (289)
.|. +|.|| .|++.++++ +.+.+. ... ...+.|.. ...++.+.+
T Consensus 266 qkfg~P~g~GGP~--aGflavr~~-~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~ 342 (954)
T PRK05367 266 QRFGVPMGFGGPH--AAYFAVRDA-YKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASM 342 (954)
T ss_pred cccCCCCCCCCCC--EEEEEECHH-HHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHH
Confidence 987 55565 899999654 332221 000 00111111 111122111
Q ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC
Q 044773 137 SDKKFA-QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 215 (289)
. ..++ ..=+++..++...+.+++.+.|.+.|+++..+...-.+.++++. +..++.+.++ ++||.+..-
T Consensus 343 y-~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~--------~~~~i~~~l~-~~gi~~~~~- 411 (954)
T PRK05367 343 Y-AVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGG--------DAAAVLARAL-AAGINLRRV- 411 (954)
T ss_pred H-HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCC--------CHHHHHHHHH-HCCceeccc-
Confidence 1 1111 22267778888889999999998778776533211012233321 1245777776 669987321
Q ss_pred CCCCCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 216 SCHCTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 216 ~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
..+.+|+|+.. ++++|++.+++.+.
T Consensus 412 -----~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 412 -----DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -----cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 14579999954 79999999999997
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-05 Score=73.81 Aligned_cols=210 Identities=12% Similarity=0.062 Sum_probs=123.5
Q ss_pred hHHHhhhCCC-ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC-----EEEEecCCCCCccCCCCccChhhhhhcccc
Q 044773 2 YQLAQKRHLK-VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNI-----HLISDEIYSGTVFSSPGFVSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~~-~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~-----~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 75 (289)
|++++.++.. +-+|+.+-.+-++|.+=+ +++|.++|+++|+ ++.+|.+|+++...-.........
T Consensus 218 L~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df------ 288 (470)
T PLN02263 218 FKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTF------ 288 (470)
T ss_pred HHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCC------
Confidence 5666655532 334445555778998766 9999999999986 999999998764411110110111
Q ss_pred ccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------ccccCCCChHH--HHHHHHHhCCchHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------MSSFGLVSSQT--QYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~--q~~~~~~l~~~~~~~~~~ 146 (289)
....+-+..+.+|.++ ....+|.++.+++.+ +.+.. .......+... ...+...+.... .+-+
T Consensus 289 ----~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G--~~G~ 360 (470)
T PLN02263 289 ----KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YRGF 360 (470)
T ss_pred ----CcCccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhC--HHHH
Confidence 1124456779999987 668899999976543 22211 11111122222 233333343322 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 147 SENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
++..+..-++.+++.+.|++.|+.... |.. ..+.+.-+. + +. ..+ |-.+.+ .+..+
T Consensus 361 ~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s-~~V~f~~p~--~--------~~---~~~--gW~L~~-------~~~~~ 417 (470)
T PLN02263 361 QKEVQKCLRNAHYLKDRLREAGISAMLNELS-STVVFERPK--D--------EE---FVR--RWQLAC-------QGNIA 417 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCc-eEEEEecCc--h--------HH---hhc--ceEEcc-------CCCcE
Confidence 666777778888899999988876544 444 344443221 1 11 112 333332 12358
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
+|++.. .+.+.++++++.|++.....
T Consensus 418 Hivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 418 HVVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 999854 58899999999998876643
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-05 Score=68.02 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=131.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.++++++.+.-||+.++ +.+|-.++++++++++.|-+|+...+. ..+ ...+-++.|++
T Consensus 165 dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp----~~L------------h~~gaDfaigc 225 (407)
T COG3844 165 DDVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVP----VDL------------HAAGADFAIGC 225 (407)
T ss_pred cceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcc----eee------------cccCCCeeeee
Confidence 46888899999999999999 999999999999999999999853221 221 13466788999
Q ss_pred Ccccc-CCCCceEEEEEecCHHHHHHHH----------------hc------cccCC--CChHHHHHHHHHhCCchHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYSNDDTVVAAAT----------------KM------SSFGL--VSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~~~~~~~~~~~----------------~~------~~~~~--~~~~~q~~~~~~l~~~~~~~~ 144 (289)
.-|++ |.||-.-|.-+.+ ........ .+ ..+.+ .+.++..++...|.-.. +-
T Consensus 226 syKYLNgGPGapa~l~v~~-~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa--~~ 302 (407)
T COG3844 226 SYKYLNGGPGAPAGLFVAP-RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFA--DV 302 (407)
T ss_pred eceeccCCCCCceeEEecc-ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhh--hc
Confidence 99999 3567655555543 22111111 11 11221 11233333333333221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKA----GISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
.+.++|++--...+++.+.++.. ++++..|-. |-.+.+.-+. ..+....|. ++||. |..
T Consensus 303 ~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---------~~~V~qaLi-~rGVi---gD~ 369 (407)
T COG3844 303 DITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---------GYQVMQALI-DRGVI---GDF 369 (407)
T ss_pred CHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---------HHHHHHHHH-HcCcc---ccc
Confidence 27788888888888999998865 445544432 2233333332 234566665 77987 332
Q ss_pred CCCCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 217 f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+..+|+.++. ++-.++-.+++.|.+++++..
T Consensus 370 ---R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 370 ---REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ---cCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 235789999953 688999999999999988653
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=75.24 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=67.4
Q ss_pred hHHHhhhCCCc-cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKV-KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~-~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++..++.. |+++++||+. -|.+.+ +++|+++++.+++++.+|++|... ++-....+.... .
T Consensus 156 ~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~~~~~l~~~~~----------~ 220 (557)
T COG1982 156 FKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FDFSPMLPESAL----------N 220 (557)
T ss_pred HHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccc-ccccccCcchhh----------h
Confidence 56777777788 9999999865 499999 899999999999999999999754 432222221111 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecC
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSND 108 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~ 108 (289)
...+++..|.+|.++ +....++|..++
T Consensus 221 ~~~~~~tqS~HK~l~-alSQaS~iHv~~ 247 (557)
T COG1982 221 GGADFVTQSTHKLLA-ALSQASMIHVKD 247 (557)
T ss_pred cCceEEEechhhhhh-hhhhhHHHhhCC
Confidence 367788999999996 555666776654
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-05 Score=67.54 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=132.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRN-ELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
||+..... ++|+|+.-. ..+++. +-.++.++|.+.|+++++|-+|-.........++.+++.
T Consensus 181 Le~~A~~f-rPk~iiaG~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~---------- 243 (477)
T KOG2467|consen 181 LEKTATLF-RPKLIIAGT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC---------- 243 (477)
T ss_pred HHHHHHhc-CCcEEEecc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----------
Confidence 34444444 678755543 223333 477888888899999999999954333333344544443
Q ss_pred CCceEEEecCccccCCCCceEEEEEecC-----------HHHHH---HHHh--cccc-CCCChHHHHHHHHHhCCchHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSND-----------DTVVA---AATK--MSSF-GLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~-----------~~~~~---~~~~--~~~~-~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
+|+..+.+|++ -|-|-|.|.-+. +...+ .++. +... +.++.....+++.+|+.-. .
T Consensus 244 ---DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~--t 316 (477)
T KOG2467|consen 244 ---DIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--T 316 (477)
T ss_pred ---ceeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC--C
Confidence 38889999998 556668777532 11222 2221 1222 2244455566666666432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC---
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--- 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--- 219 (289)
...++-.++...+.+.|.+.|.+.|.+... ....-.+.+++...--. -.-++.+++..+|.+.--.-+|.
T Consensus 317 pefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~d------GarvE~vle~~~I~~NKNtvpGD~Sa 390 (477)
T KOG2467|consen 317 PEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVD------GARVEKVLELCHIALNKNTVPGDKSA 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCc------hHHHHHHHHHhhhhhcCCcCCCCccc
Confidence 334666667778889999999999887654 33344555676653211 23566677777888654444442
Q ss_pred CCCCeEEEEEec-----CCHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 ~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~ 249 (289)
.-++.+||.... ..++|+++..+-|.++++
T Consensus 391 l~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 391 LSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred cCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 236789998743 245778777777766654
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-05 Score=67.45 Aligned_cols=227 Identities=16% Similarity=0.206 Sum_probs=147.2
Q ss_pred CccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCcc------CCCCccChhhhhhcc-ccccCCCC
Q 044773 11 KVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVF------SSPGFVSIMEILKDR-NCENTEVW 81 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~------~~~~~~~~~~~~~~~-~~~~~d~~ 81 (289)
++..|+++-- |...|+..|-+.+++..++|++|++.++.|.+-. ...+ .+..-.++.++..++ ||
T Consensus 185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sY------ 258 (471)
T COG3033 185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSY------ 258 (471)
T ss_pred cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhh------
Confidence 3555555544 4466999999999999999999999999998742 2111 145567788877664 22
Q ss_pred CceEEEecCccccCC-CCceEEEEEecCHHH---HHHHH-------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGL-PGFRVGAIYSNDDTV---VAAAT-------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~-~G~r~G~i~~~~~~~---~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
-+-+..|.-|---. -| |++..+++.. ....+ -+.+++..+.-...+++.-|.+.-. .+|++.+.
T Consensus 259 -aD~~~mS~KKD~lvnmG---Gfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv 333 (471)
T COG3033 259 -ADGCTMSAKKDGLVNMG---GFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRV 333 (471)
T ss_pred -hhhheeeccccceeccc---cEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHH
Confidence 12234444443211 24 7777776643 22222 1244555555566666666665432 45555544
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCC--CC-----
Q 044773 151 KRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHC--TE----- 221 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~----- 221 (289)
.+ .++|.+.|.+.|+++..|.||--++++..+..+. .....+..++-.|-++.||-..--..|.. +.
T Consensus 334 ~Q----v~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q 409 (471)
T COG3033 334 AQ----VQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQ 409 (471)
T ss_pred HH----HHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCcccc
Confidence 33 3678999999999999999998898887765432 12244466888888899998654333321 11
Q ss_pred ----CCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 222 ----PGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 222 ----~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
-..+|+++.. -+.+.+|-..+.++++.+...
T Consensus 410 ~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~ 446 (471)
T COG3033 410 HPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE 446 (471)
T ss_pred CCCchheeeEeccccccchhHHHHHHHHHHHHHhccc
Confidence 1469999953 488999999999998887653
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=77.15 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=115.7
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
.+++.+| |.+|.+.+ +++|.++|+++|+++++ .++. +....-. +..++ +-++++++..|.
T Consensus 237 ~vlvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad~-lal~~l~--~pge~------------GADi~vgsgqKw 296 (993)
T PLN02414 237 GVLVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATDL-LALTMLK--PPGEW------------GADIVVGSAQRF 296 (993)
T ss_pred EEEEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EECH-HHhcCCC--CHhhc------------cCcEEEECCCcc
Confidence 3344444 34899987 99999999999999999 5543 2222221 22223 566889998887
Q ss_pred c---CCCCceEEEEEecCHHHHHHHH-hcc-------------------------ccCCCChHHHHHHHHHhCCc--hHH
Q 044773 94 L---GLPGFRVGAIYSNDDTVVAAAT-KMS-------------------------SFGLVSSQTQYLLSALLSDK--KFA 142 (289)
Q Consensus 94 ~---g~~G~r~G~i~~~~~~~~~~~~-~~~-------------------------~~~~~~~~~q~~~~~~l~~~--~~~ 142 (289)
. |..|-+.|++.++++. .+.+. ..- ..++.|.....++.+.+... .++
T Consensus 297 g~P~G~GGP~aGflavr~~~-~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~ 375 (993)
T PLN02414 297 GVPMGYGGPHAAFLATSQEY-KRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 375 (993)
T ss_pred ccCCCCCCCCeeEEEECHHH-HhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHh
Confidence 6 2234459999996543 32221 000 01122222222322222211 011
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 143 -QNYISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 143 -~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
..-+++..++..++..++.+.|.+.|+++..+. .+ .+.++++. ..++.+.|+ +.||.+....
T Consensus 376 g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~-~vt~~~~~---------~~~v~~~L~-~~gI~l~~~~----- 439 (993)
T PLN02414 376 GPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFD-TVKVKCSD---------ADAIADAAA-KVGINLRVVD----- 439 (993)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcC-eEEEecCC---------HHHHHHHHH-HCCCeeEEec-----
Confidence 112566778888888999999988787765432 12 22234331 134666665 6699766321
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
.+.+|+|+.. ++++|++.+++.|..
T Consensus 440 -~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 440 -ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred -CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 3479999954 799999999999974
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-07 Score=80.78 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=82.7
Q ss_pred CCccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+|. .|++++.+++++|.++|+++|+.++.|-+--.... .....++.++.. ..+.+..
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~-~~~~~~~~e~~~----------~~D~v~~ 191 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAA-AALGVSLAEIAA----------GADSVSF 191 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHH-CHHHHHHHHHHT----------TSSEEEE
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhh-hcccccHHHHhh----------hCCEEEE
Confidence 46899999999886 49999999999999999999999999999642211 111233444432 4557778
Q ss_pred cCccccCCCCceEEEEEecCHH-HHHHHHhccccC----CCChHHH--HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDT-VVAAATKMSSFG----LVSSQTQ--YLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~-~~~~~~~~~~~~----~~~~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
|++|.+|+++ |.+++-++. +.+........+ ....+.. ......+... +. ......+..++.+++.
T Consensus 192 ~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l---~~-~~~~~~~~~~~A~~La 264 (290)
T PF01212_consen 192 GGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRAL---EL-WLERARHANAMAKRLA 264 (290)
T ss_dssp ETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHE---EC-SHHHHHCHHHHHHCHH
T ss_pred EEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHH---Hh-hHHHHHHHHHHHHHHH
Confidence 8999998776 666554555 333322222111 0111111 0000112111 11 1334455566678888
Q ss_pred HHHHhcCCceec
Q 044773 162 SGLEKAGISCLK 173 (289)
Q Consensus 162 ~~l~~~g~~~~~ 173 (289)
+.|+.++..+..
T Consensus 265 ~~l~~~~~~~~~ 276 (290)
T PF01212_consen 265 AGLEALGGVLPR 276 (290)
T ss_dssp HCHHEECEEEET
T ss_pred HHHHHCCCcccC
Confidence 888887654433
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=71.50 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=106.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+.-..+|+-+-++-++|.+=+ +++|.++|.++++++.+|.||+++...-...... +.. ...
T Consensus 198 l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~--~~f-------~l~ 265 (460)
T COG0076 198 LEEAIDENTIGGVVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR--WDF-------GLE 265 (460)
T ss_pred HHHHHHhhccCceEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEEEccccceeecccCccch--hhc-------CCC
Confidence 4566655511113677777889998755 9999999999999999999999875421111111 111 122
Q ss_pred CceEEEecCccccCCCCceEEEEEecCH-HHHHHHHhccccCC----------CChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDD-TVVAAATKMSSFGL----------VSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~-~~~~~~~~~~~~~~----------~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
..+-+..+++|... .-..+||++.+++ .+.+.......++. ++..+-.++..+..-..+..+-.+++.
T Consensus 266 ~vdSIt~d~HK~g~-aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~ 344 (460)
T COG0076 266 GVDSITVDGHKYGL-APIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLL 344 (460)
T ss_pred CceEEEECcccccC-CCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHH
Confidence 44456789999775 6678999999887 45554442222211 122222222222221111134467777
Q ss_pred HHHHHHHHHHHHHHHhcC-CceecCCceEEEEEecCc
Q 044773 151 KRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRH 186 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~i~~~~ 186 (289)
++.-+..+++.+.+++.| +++..+.....+.++.++
T Consensus 345 ~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 345 DRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 888889999999999985 887764444566677754
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.4e-05 Score=66.82 Aligned_cols=203 Identities=12% Similarity=0.063 Sum_probs=121.0
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
...++.+.|.+|+-.-.||..++ ++.+.+++++|+|.+-+- .+.+ ..+. +..++
T Consensus 139 ~~~~d~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~---~s~p-id~~--------------~~dvi 192 (364)
T PRK12462 139 DWDARAPFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDF---MSRP-FDVE--------------AYGMV 192 (364)
T ss_pred ccCCCCcEEEEccCCCCceEecC--------cccccCCCeEEEEcCchh---hCCC-CChH--------------HccEE
Confidence 34456777777755557799886 222236899999999873 2333 3332 22578
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHH-------------hccccCCCChHHHHHHHHHhCCchHHHH--HHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-------------KMSSFGLVSSQTQYLLSALLSDKKFAQN--YISENKK 151 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~-------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~ 151 (289)
..+.=|.+|.+| ++.++.+++.+..... ....+.+++....+++...++-.. ++ =++.+.+
T Consensus 193 ~agsQKnlgP~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~ 268 (364)
T PRK12462 193 YAHAQKNLGPAG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRD 268 (364)
T ss_pred EeeccccCCCCc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHH
Confidence 888999999777 6677775554432111 112233334444444444433211 11 2567778
Q ss_pred HHHHHHHHHHHHHHhcC-CceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 152 RLKQRHRKLVSGLEKAG-ISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+.+++.+.+++.+.+.. +..... -+-+-+.+++.+.. .+.++... +++.|+.-..|..- -+.+|
T Consensus 269 r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~------l~~~f~~~-a~~~gl~~lkGhr~----vgg~R 337 (364)
T PRK12462 269 INARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPR------LDTLFKEQ-STEAGFCGLSGHRS----IGGIR 337 (364)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHH------HHHHHHHH-HHHCCCccccCCcc----cCceE
Confidence 88888899999998873 432211 12234445544321 12345554 45779987655432 35699
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+|+-+ .+.|.++.+++-++++-++
T Consensus 338 as~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 338 ASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99944 7899999988888887654
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.6e-05 Score=66.03 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=115.9
Q ss_pred hHHHhhhCC---CccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCc-cChhhhhhcccc
Q 044773 2 YQLAQKRHL---KVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF-VSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~---~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~~~ 75 (289)
+|+++.++. .+-+.++..| +.-.| .--|++....|.+++++|++.+|+||++.+.+-+|.-- ..-+.+
T Consensus 258 Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l------ 331 (484)
T KOG1405|consen 258 VEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNL------ 331 (484)
T ss_pred HHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCC------
Confidence 345554443 2334466667 54444 34588899999999999999999999999876554321 111112
Q ss_pred ccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHH-HHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA-AATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+.-.-+.+|||-|- .| ||..- ++..-+ ..+.++++. ..+.-...+..+++.... +.+....+
T Consensus 332 ------~~PpD~vTFSKK~q-~g---Gffh~-~~frpn~pYrifNTWm-GdP~k~lll~~vv~~I~~-----~~Ll~n~~ 394 (484)
T KOG1405|consen 332 ------DSPPDVVTFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNTWM-GDPSKNLLLEEVVQEIKR-----EDLLNNVA 394 (484)
T ss_pred ------CCCccceehhhhhh-cC---ccccC-cccCCCchHHHhhhhc-CChHHHHHHHHHHHHHhH-----HHHHHHHH
Confidence 11134678999995 66 66554 222222 233334333 333333333333332221 22233334
Q ss_pred HHHHHHHHHHHhc----C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 155 QRHRKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
..-+.|...|.++ + +.-....|. |+.++++....- ++++..+ +-.|+.+-.+ | ...+|+.
T Consensus 395 ~vG~~l~~gL~~Lq~~~p~~~~~~RGrGT-F~a~d~ps~~~R------dk~i~~~-~~nGv~~GGC---g---~~siRfR 460 (484)
T KOG1405|consen 395 HVGKALLKGLLELQAKYPGKINNLRGRGT-FIAWDCPSGSIR------DKLILIA-RLNGVNLGGC---G---DKSIRFR 460 (484)
T ss_pred HHHHHHHHHHHHHHHhCchhhhcccccce-EEEEeCCChHHH------HHHHHHH-HHcCceeccc---c---cceeeec
Confidence 4444455555443 1 333334554 555677764322 3455544 4667775532 2 3456776
Q ss_pred Eec-CCHHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
++. -++...+..++++.+.+.
T Consensus 461 PsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 461 PSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred cceeehhhhHHHHHHHHHHHhc
Confidence 653 377888999988887764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-05 Score=70.87 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=56.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-CCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++|+|++++. -|...+ +++|.++|+++|++||+|.+++.... .|....+
T Consensus 106 ~~~~i~--~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~--------------- 162 (363)
T PF01041_consen 106 LEKAIT--PKTKAILVVHL---FGNPAD---MDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGS--------------- 162 (363)
T ss_dssp HHHHHH--TTEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTS---------------
T ss_pred HHHHhc--cCccEEEEecC---CCCccc---HHHHHHHHHHcCCcEEEccccccCceeCCEeccC---------------
Confidence 345544 56899988876 355454 99999999999999999999985322 1211111
Q ss_pred CCceEEEecC--ccccCC-CCceEEEEEecCHHHHHHHHhcc
Q 044773 81 WNRVHIVYSL--SKDLGL-PGFRVGAIYSNDDTVVAAATKMS 119 (289)
Q Consensus 81 ~~~~i~i~s~--sK~~g~-~G~r~G~i~~~~~~~~~~~~~~~ 119 (289)
..++.+.|| +|.+.. -| |+++++++.+.+.++.+.
T Consensus 163 -~gd~~~fSf~~~K~i~~geG---G~v~~~~~~~~~~~~~~~ 200 (363)
T PF01041_consen 163 -FGDIAIFSFHPTKIITTGEG---GAVVTNDPELAERARALR 200 (363)
T ss_dssp -SSSEEEEESSTTSSS-SSS----EEEEESTHHHHHHHHHHT
T ss_pred -CCCceEecCCCCCCCcCCCC---eeEEecHHHHHHHhhhhh
Confidence 123556665 698852 35 999998888877766543
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00086 Score=60.09 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=116.3
Q ss_pred HHHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhc-cccccCCC
Q 044773 3 QLAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD-RNCENTEV 80 (289)
Q Consensus 3 ~~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ 80 (289)
|+.++. .++..+.++++++--.|... +++++|+++|++||+..|+..||+- -.. .....++. . -.
T Consensus 145 e~~i~~~G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv---Q~~---~~~~~i~~a~-----~~ 211 (389)
T PF05889_consen 145 EAKIEELGADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV---QSS---KCMHLIQQAW-----RV 211 (389)
T ss_dssp HHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T-H---HHHHHHHHHH-----HH
T ss_pred HHHHHHhCCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh---hHH---HHHHHHHHHH-----hc
Confidence 444433 23456668888754445543 3699999999999999999999972 111 11111111 0 01
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHH-HhccccCCCChHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGLVSSQTQYLLSALLS--DKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~ 157 (289)
....+++.|+.|-|= -+..-+.|.++++.....+ +.+.+-. ..++.......++. ...| ...+.++.+.+....
T Consensus 212 GRvda~vqS~dkNF~-VPvGgai~As~~~~~i~~vs~~YpGRa-s~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~ 288 (389)
T PF05889_consen 212 GRVDAFVQSTDKNFM-VPVGGAIMASFDPSGILAVSKEYPGRA-SASPSLDLFITLLSLGCTGY-GALLKERKASFPYLK 288 (389)
T ss_dssp STCSEEEEEHHHHHC-EESSHEEEEESSHHHHHHHHHTSHSHB-TSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCcceeeeecCCCEE-ecCCCcEEEecCHHHHHHHHHHhhhhh-hcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHH
Confidence 234578899999982 2222256666666555544 4444443 22233333333333 3333 444555555555555
Q ss_pred HHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE----EeCCCCCC-----CCCCCeEEE
Q 044773 158 RKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN----ISPGSSCH-----CTEPGWFRV 227 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~~f~-----~~~~~~~Ri 227 (289)
+++.+.-++.+-.+.. |.....+.+.++....... .+...+...| ...||. +.|+..+. ..+-.|+-+
T Consensus 289 erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~-k~~~~lgs~L-f~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~ 366 (389)
T PF05889_consen 289 ERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQ-KDGTFLGSML-FKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTA 366 (389)
T ss_dssp HHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCS-SHHHHHHHHH-HHTTEESSEEEETSSCEEETTSS--SSSEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhcc-chhhhHHHHH-HhCCcccceeeccCCCcccccCCCCchHHHHH
Confidence 5555555554433322 3333334445543322111 2333455555 466775 33332221 123478888
Q ss_pred EEec-CCHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+.+. ++.||++..+++|.++++
T Consensus 367 AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 367 ASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhC
Confidence 6643 799999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00064 Score=62.14 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=97.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++-+|++.+||. .|.+-+ +++|.++++++|+++|+ -+.- ..+.+-..+ . ..+-+|++++
T Consensus 196 ~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~l~~P--g------------e~GADI~vg~ 255 (429)
T PF02347_consen 196 DDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALGGLKSP--G------------EYGADIVVGE 255 (429)
T ss_dssp TTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCTC--G--G------------GGT-SEEEEC
T ss_pred cCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhCcCCh--h------------hcCccEEeeC
Confidence 5788999999975 588755 99999999999999887 3332 333332222 2 2244566775
Q ss_pred CccccC----CCCceEEEEEecCHHHHHH---------------------------HHhc--cccCCCChHHHHHHHHHh
Q 044773 90 LSKDLG----LPGFRVGAIYSNDDTVVAA---------------------------ATKM--SSFGLVSSQTQYLLSALL 136 (289)
Q Consensus 90 ~sK~~g----~~G~r~G~i~~~~~~~~~~---------------------------~~~~--~~~~~~~~~~q~~~~~~l 136 (289)
+|.|| .+|=-+|++.++++.+... +++- .+.. ++.....++.+++
T Consensus 256 -~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNI-ctnqaL~A~~a~~ 333 (429)
T PF02347_consen 256 -HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNI-CTNQALLALAAAI 333 (429)
T ss_dssp -CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT----SS-HHHHHHHHH
T ss_pred -CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhh-hhhHHHHHHHHHH
Confidence 77775 3456789998865533221 1111 1222 3332332222222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
--.....+=+++..+....+..++.+.|.+. +..+..+ -|+ +...... ....++.+... ..|+..
T Consensus 334 Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~--~f~e~v~~~~~~-------~~~~~l~~~~~-~~gl~~-- 401 (429)
T PF02347_consen 334 YLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNP--FFFEFVVVFSKD-------KEVEELLKRGI-EGGLNL-- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSS--SBSSEEEEESS--------HHHHHHHHTT-----EEE--
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--CceeeeeecCCc-------HHHHHHHHHHH-hcCCCc--
Confidence 1111115558889999999999999999986 3333222 232 2222221 11122333333 234322
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
.....+.+-+++.- .+.++++.+++.+
T Consensus 402 ----~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 402 ----RYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ----GGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ----cccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 22334578888854 5889999988754
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.001 Score=60.42 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=88.6
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
+|+.+-.+-.+|.+ +++++|.++|+++++++.+|.+|.+..+-.+.......- ...-+-+..+++|.
T Consensus 197 ~vvat~Gtt~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~g----------i~~adSit~d~HK~ 263 (373)
T PF00282_consen 197 AVVATAGTTNTGAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFG----------IERADSITIDPHKW 263 (373)
T ss_dssp EEEEEBS-TTTSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTT----------GGGESEEEEETTTT
T ss_pred eeeccCCCcccccc---cCHHHHhhhccccceeeeecccccccccccccccccccc----------cccccccccchhhh
Confidence 44455556778887 459999999999999999999999743322222221111 22334567789999
Q ss_pred cCCCCceEEEEEecCHHHHH-HHHhcccc------------------CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 94 LGLPGFRVGAIYSNDDTVVA-AATKMSSF------------------GLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~~~~-~~~~~~~~------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
++ ....+|+++.+++.... .......| ..++. ...++..++.-..+..+-+++..+..-
T Consensus 264 l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~ 341 (373)
T PF00282_consen 264 LG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCI 341 (373)
T ss_dssp TS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98 55789999998765432 22111111 11333 333333333222222444677777788
Q ss_pred HHHHHHHHHHHhc-CCceec-CCceEEE
Q 044773 155 QRHRKLVSGLEKA-GISCLK-SNAGLFC 180 (289)
Q Consensus 155 ~~~~~l~~~l~~~-g~~~~~-~~~g~~~ 180 (289)
+..+++.+.+++. ++++.. ++-+..+
T Consensus 342 ~~a~~l~~~l~~~~~~el~~~~~~~~vc 369 (373)
T PF00282_consen 342 ELARYLADRLRKDPRFELVNEPDLNIVC 369 (373)
T ss_dssp HHHHHHHHHHHTSTTEEESSTTSSSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCceEEE
Confidence 8889999999987 577654 4444333
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0023 Score=64.01 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=114.1
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++-++++.+|+. .|.+.+ +++|.+++++.|++++++--... +.... +.. ..+-+|+++ .
T Consensus 194 ~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~gal~~~~ad~~a--l~ll~--~Pg------------e~GaDi~vg-~ 252 (939)
T TIGR00461 194 DVFGCLLQYPAT-DGSILD---YKQLIDALHSHKSLVSVAADLMA--LTLLT--PPG------------HYGADIVLG-S 252 (939)
T ss_pred CEEEEEEECCCC-CeEEec---HHHHHHHHHHcCCEEEEEechHH--hCCcC--CHH------------HcCCcEEee-C
Confidence 566778888854 688864 99999999999999998443322 22222 212 224445554 3
Q ss_pred ccccCC----CCceEEEEEecCHHHHHHHH----------------------------hccccCC-CChHHHHHHH-HH-
Q 044773 91 SKDLGL----PGFRVGAIYSNDDTVVAAAT----------------------------KMSSFGL-VSSQTQYLLS-AL- 135 (289)
Q Consensus 91 sK~~g~----~G~r~G~i~~~~~~~~~~~~----------------------------~~~~~~~-~~~~~q~~~~-~~- 135 (289)
+|.||. .|--.|++.++++. .+.+. +-..+++ ++.....++. .+
T Consensus 253 ~q~fg~p~g~GGP~aG~~a~~~~l-~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y 331 (939)
T TIGR00461 253 SQRFGVPMGYGGPHAAFFAVKDEY-NRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSY 331 (939)
T ss_pred CCccCCCCCCCCCceeeeeecHhh-HhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHH
Confidence 454543 34458888885443 32210 0001111 1111111211 21
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 136 LSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
+... ..+-+++..++...+..++.+.|.+.|+++..+ .+| +.++++. . +..++.+.++ +.||.+..
T Consensus 332 ~~~~--G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-~------~~~~i~~~~~-~~gi~l~~ 399 (939)
T TIGR00461 332 CVYH--GPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-G------ISSELLKAAE-EFNINLRA 399 (939)
T ss_pred HHHH--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-C------CHHHHHHHHH-HCCCeeee
Confidence 1111 033367778888888899999999989887655 334 2234421 0 1235667766 66999765
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
. ..+.+++|+.. ++.++++.+++.+.
T Consensus 400 ~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 400 V------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred c------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 2 23579999954 79999999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.011 Score=53.74 Aligned_cols=230 Identities=12% Similarity=0.159 Sum_probs=111.8
Q ss_pred hHHHhhhCCC---ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLK---VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~---~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
|++++.++.. +.++++-+. -|-.+...+++++|..+|+++++++.+|.+|++-.+-=+.+..+..-+.
T Consensus 222 L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie------- 292 (511)
T KOG0628|consen 222 LRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIE------- 292 (511)
T ss_pred HHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcch-------
Confidence 4555555432 334344433 2344467789999999999999999999999976443222222111110
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEe------------cCHHHHHHHHhc-ccc--CCCCh-HHHHHHHHHhCCchHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYS------------NDDTVVAAATKM-SSF--GLVSS-QTQYLLSALLSDKKFA 142 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~------------~~~~~~~~~~~~-~~~--~~~~~-~~q~~~~~~l~~~~~~ 142 (289)
.-+-+-...||.+- --+.+..+-. .+..+....... ..+ +..+. -.-..+..++.-..+.
T Consensus 293 ---~aDSfn~n~hK~~~-vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~G 368 (511)
T KOG0628|consen 293 ---YADSFNFNPHKWLL-VNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYG 368 (511)
T ss_pred ---hhccccCChhheeE-EeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHh
Confidence 00112223344331 1122222211 111222111111 111 11111 1111222222211121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
-+.+++..++.-+..+.+-+.+.+- .+++..+. -|+.+ +++... + ....++..++-....|.+.|.+.-+
T Consensus 369 ve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvc-FRlk~~-N----~~ne~Ll~~in~~g~i~l~~~~l~g-- 440 (511)
T KOG0628|consen 369 VENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVC-FRLKGD-N----EINEALLNRLNSSGRIHLVPASLHG-- 440 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeE-EeecCC-c----HHHHHHHHHHHhcCcEEEEEeeecc--
Confidence 2222222222333333333333222 45554333 34333 454432 1 1224578888888889999877543
Q ss_pred CCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.-.+|++++. .+.++++.+++.|.+..++...
T Consensus 441 -k~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~ 474 (511)
T KOG0628|consen 441 -KFVLRFAVCSPLTNESDIDEAWKIIFEAADELFE 474 (511)
T ss_pred -eEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4679999954 5889999999999888777443
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.036 Score=50.54 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=118.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++..++.+-|+-|+|..= +.++|.+++.+ +++.+.+|.+-+++... +.....-+++ ......-+-
T Consensus 217 eNti~lv~~~~~~p~G~~e---~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF---------r~p~V~Sis 284 (491)
T KOG1383|consen 217 ENTIMLVGSLPNFPTGEIE---DVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF---------RVPGVTSIS 284 (491)
T ss_pred cceEEEEEEcCCCCccchh---hHHHHHHHHHHHhCCceeecccCccccccccccCcccccc---------CCCCceeEe
Confidence 4588989999999999864 58888888888 99999999999887543 2211111111 111222233
Q ss_pred ecCccccCCCCceEEEEEecCHHHHH-HHH-h--c-----cc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVA-AAT-K--M-----SS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~-~~~-~--~-----~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+-+| +|+.--.+||++-+++.+.. .+. . + .+ ....|..+-.+++.+..-..+..+-..+..+.+.+..
T Consensus 285 a~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~ 363 (491)
T KOG1383|consen 285 ADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETA 363 (491)
T ss_pred eccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556 45444448898876655432 111 1 1 01 1112222222222222211111233456667788888
Q ss_pred HHHHHHHHhc-CCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--CC
Q 044773 158 RKLVSGLEKA-GISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MS 233 (289)
Q Consensus 158 ~~l~~~l~~~-g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~--~~ 233 (289)
+.+++.+++. ++.+... .-.+.+ .... . .+..++...| ++.|=.+. +..| +..+-|++.. ..
T Consensus 364 ~~l~egie~i~~i~i~gkp~vs~~~---~~s~--~---~~i~elsd~l-~~~GW~ln-alq~----P~a~Hi~vt~~~~~ 429 (491)
T KOG1383|consen 364 RKLREGIENIKGIKIVGKPLVSFIL---FGSN--D---VNIFELSDLL-RKKGWILN-ALQF----PAAIHICVTRVHAR 429 (491)
T ss_pred HHHHHhhhccccceecCCCcEEEEE---ccCC--c---cchhhhhHHH-HhcCcCcc-ccCC----CCceEEEEEeeecc
Confidence 8999999987 6666654 322222 1111 1 2334555555 46565544 3322 2245566533 24
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~ 253 (289)
++--++++..+.+++++...
T Consensus 430 ~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 430 EDVADRFVADIRKVVEELKS 449 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45467777778888777765
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0057 Score=54.97 Aligned_cols=118 Identities=24% Similarity=0.171 Sum_probs=74.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++.++. +++++++-++-+|. --..++ +++++++|+++++.+|+|++-....- ..+.+..++.
T Consensus 149 ~~~AIn--e~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~---~e~~l~~~la--------- 211 (395)
T COG1921 149 YELAIN--ENTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVD---KEPDLREALA--------- 211 (395)
T ss_pred HHHHhc--cCCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCccccc---cccchhHHHh---------
Confidence 344555 45777655544442 112234 78899999999999999999875422 3344455543
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCC
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~ 138 (289)
.+-+++++|-.|.|| |-+-|.|+++++.+.+..++... -..+..+...++.++|+.
T Consensus 212 ~GaDLV~~SgdKllg--GPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~ 268 (395)
T COG1921 212 LGADLVSFSGDKLLG--GPQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALEL 268 (395)
T ss_pred cCCCEEEEecchhcC--CCccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHH
Confidence 256688999999985 45589999965555333232222 223666666676666664
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00064 Score=60.42 Aligned_cols=152 Identities=21% Similarity=0.179 Sum_probs=47.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCc----cCCCCccChhhhhhccccc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTV----FSSPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (289)
|++++. +++.+++..+++|..-.-+ ..-.++++++++++|++.+|+|-.-..+. ++-+..+++.+.+.
T Consensus 129 ye~AI~--e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~----- 201 (367)
T PF03841_consen 129 YEKAIT--ENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA----- 201 (367)
T ss_dssp ----------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-----
T ss_pred cccccc--ccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-----
Confidence 455554 5789998999888642211 11158999999999999999998873221 11122355666643
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCch----H-----HHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKK----F-----AQNY 145 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~----~-----~~~~ 145 (289)
.+-++++.|-.|.+|.|. .|.|+++. .+++.+++- ..-..+.-....++.+.|+... . ....
T Consensus 202 ----~GaDlV~fSGdKlLGGPQ--aGiI~Gkk-~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~m 274 (367)
T PF03841_consen 202 ----AGADLVTFSGDKLLGGPQ--AGIIVGKK-ELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRM 274 (367)
T ss_dssp ----CT-SEEEEETTSSSSS-S---EEEEEEH-HHHHHHHHHHHTTT-B--HHHHHHHHHHHHH----------------
T ss_pred ----cCCCEEEEECCCcCCCCC--eEEEEeCH-HHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 366788999999997454 79999964 444444432 1122255555555555544210 0 0222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+.+..+.++++.+.+...|...
T Consensus 275 l~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 275 LTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3444556666777777766654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0036 Score=52.97 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCC-CceEEEEEe
Q 044773 28 MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYS 106 (289)
Q Consensus 28 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~ 106 (289)
-+++++++|..+|..|++.-|+..+|. + ... ..+..+...- .-...+.++.|+-|.|-.| | |.+++
T Consensus 171 r~pd~leaiaaica~~diphivnnayg-l--qse--e~i~~iaa~~-----~~grida~vqsldknf~vpvg---gaiia 237 (432)
T KOG3843|consen 171 RSPDNLEAIAAICAAHDIPHIVNNAYG-L--QSE--ECIHKIAAAA-----ECGRIDAFVQSLDKNFMVPVG---GAIIA 237 (432)
T ss_pred CCCchHHHHHHHHHccCchhhhccccc-c--chH--HHHHHHHHHh-----hhccHHHHHHHhhhcceeecc---hhHhh
Confidence 366789999999999999999999997 2 111 1111111110 1123345688999998544 3 44443
Q ss_pred -cCHHH-HHHHHhccccCCCChHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce-ecCCceEEEE
Q 044773 107 -NDDTV-VAAATKMSSFGLVSSQTQYLLSALLS--DKKFAQNYISENKKRLKQRHRKLVSGLEKAGISC-LKSNAGLFCW 181 (289)
Q Consensus 107 -~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~~ 181 (289)
=++.+ ....+.+.+.. .++++...+..+|. ...+ .+.+.+..+.+-..++.+.+.-+..|-.+ ..|+....+.
T Consensus 238 ~fk~n~iq~iak~ypgra-sa~ps~dllitll~~gqn~f-~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~is~a 315 (432)
T KOG3843|consen 238 AFKDNFIQEIAKMYPGRA-SASPSLDLLITLLSLGQNAF-KELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENEISLA 315 (432)
T ss_pred HhHHHHHHHHHHhCCCcc-ccCccHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhhhh
Confidence 12233 33334444433 23334444444443 4444 33344444444444444444444443211 2233322222
Q ss_pred EecCccccCCChhhHHHHHHHHHHhcCeE---EeCCCCC------------CC----CCCCeEEEEEec-CCHHHHHHHH
Q 044773 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLN---ISPGSSC------------HC----TEPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~pg~~f------------~~----~~~~~~Ris~~~-~~~e~l~~~l 241 (289)
+.+...... ...+..+...++-..||. |+|.+.. +. ..-+|+-+.++- .+.++++++.
T Consensus 316 mtl~ti~~~--k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~ 393 (432)
T KOG3843|consen 316 MTLKTIDEA--KDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFF 393 (432)
T ss_pred hhhccCChH--HhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHH
Confidence 222221111 011122344444455663 4443322 11 112456666643 6889999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 044773 242 QRLKAFVDSITTTLHNQS 259 (289)
Q Consensus 242 ~~l~~~l~~~~~~~~~~~ 259 (289)
.||...+.+..+.+.-.+
T Consensus 394 ~rl~~~~a~~~ke~aked 411 (432)
T KOG3843|consen 394 NRLDRCLAAFRKELAKED 411 (432)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999888888776554333
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0063 Score=53.96 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=63.0
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++ +++|++++--. ..-.=..++.++++++++++|+. ++++++|++|..+.-... +.
T Consensus 147 i~~~~~--~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E--P~------------- 209 (403)
T PF06838_consen 147 IKKALK--PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE--PT------------- 209 (403)
T ss_dssp HHHHHH--TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS---GG-------------
T ss_pred HHHhhc--cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC--cc-------------
Confidence 455555 57999887755 34344458889999999999884 899999999998632211 11
Q ss_pred CCCCceEEEecCccccCCCC--ceEEEEEecCHHHHHHHHhcc
Q 044773 79 EVWNRVHIVYSLSKDLGLPG--FRVGAIYSNDDTVVAAATKMS 119 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G--~r~G~i~~~~~~~~~~~~~~~ 119 (289)
.-+-+++.||+-|-.| .| --=|||+++.+.+.....++.
T Consensus 210 -~vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLT 250 (403)
T PF06838_consen 210 -EVGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLT 250 (403)
T ss_dssp -GGT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS
T ss_pred -ccchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhc
Confidence 1145589999999987 32 123999997655555555554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.1 Score=47.33 Aligned_cols=221 Identities=12% Similarity=0.098 Sum_probs=126.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.+++++|||- .|.- ++++.+|+++.+++|..|+.|-+--.-..+ .-.+. +.+.++.=.-
T Consensus 203 ~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG-~~rPG--------------d~G~DV~HlN 264 (496)
T COG1003 203 DNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVG-LARPG--------------DMGFDVVHLN 264 (496)
T ss_pred cceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhc-ccccc--------------ccccceEEee
Confidence 4688899999853 3543 788999999999999999999886432222 11111 2233454556
Q ss_pred CccccC----CCCceEEEEEecCHHHHHHHHh----------------------ccccCCCChHHHHHHHHHhCCchHHH
Q 044773 90 LSKDLG----LPGFRVGAIYSNDDTVVAAATK----------------------MSSFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 90 ~sK~~g----~~G~r~G~i~~~~~~~~~~~~~----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
++|+|. ..|-.+|=|... ..+..++-. ...++ .|.........++.... .
T Consensus 265 LHKTF~iPHGGGGPG~GPvgVk-~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~-Gs~~il~~a~~YI~~mG--~ 340 (496)
T COG1003 265 LHKTFCIPHGGGGPGAGPVGVK-AHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPY-GSASILPIAWAYIRMMG--A 340 (496)
T ss_pred cccccccCCCCCCCCCCceehH-hhccccCCCCcccCCCccccccCCCCccceeecccc-CcchHHHHHHHHHHHHh--H
Confidence 888883 234445555542 222221110 11122 33333333334443321 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKA-GISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
+-+++..+..--+.+++...|+.. .+.+.+.. ..-=+.++......... ....+++++|+ .+|+.- |...|...-
T Consensus 341 ~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~G-v~~~DvAKrLl-D~GfHa-PT~~FPliV 417 (496)
T COG1003 341 DGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLKKETG-VRALDVAKRLL-DYGFHA-PTMYFPLIV 417 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhHhhcC-CcHHHHHHHHH-hcCCCC-CcccCcccc
Confidence 336666677777889999999874 22222211 11112234332211111 33467999998 668874 344554333
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.+.+-|=+.- .+.+++|+.++++.++.++.....
T Consensus 418 ~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 418 AGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred ccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666776643 578999999999999988877654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.1 Score=52.41 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=113.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe--
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY-- 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~-- 88 (289)
++-++++.+|+. .|.+.+ +++|.+++++.|+++| +.+. .+.++.-..+ . .++-+|++|
T Consensus 208 ~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~-~~~d-~laL~ll~~P--g------------e~GADI~vG~~ 267 (954)
T PRK12566 208 AVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALAC-VAAD-LLSLLVLTPP--G------------ELGADVVLGST 267 (954)
T ss_pred CEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEE-EEeC-HHHHhCCCCh--h------------hcCCcEEeeCC
Confidence 577888989964 588744 9999999999998766 3332 1223222211 1 335556666
Q ss_pred -cCccccCCCCceEEEEEecCHHHHHH---------------------------HH--hccccCCCChHHHHHHHHHhCC
Q 044773 89 -SLSKDLGLPGFRVGAIYSNDDTVVAA---------------------------AT--KMSSFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 89 -s~sK~~g~~G~r~G~i~~~~~~~~~~---------------------------~~--~~~~~~~~~~~~q~~~~~~l~~ 138 (289)
+|+=-+|.+|=-.||+.++++..... ++ +..+.. ++.....++.+.+-.
T Consensus 268 Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNI-CT~qaL~A~~a~~Y~ 346 (954)
T PRK12566 268 QRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNI-CTAQVLLANIAGFYA 346 (954)
T ss_pred CcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchh-hHHHHHHHHHHHHHH
Confidence 44444555566689998865433321 11 112222 332222222222221
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
.-...+=++++.++...+..++.+.|.+.|++.... .||=-+.+.-... ..++....+ +.||.++-.
T Consensus 347 ~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~~~------~~~~~~~a~-~~~~n~r~~---- 413 (954)
T PRK12566 347 VYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVGGA------QAAIIESAE-AARINLRIL---- 413 (954)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEccCC------HHHHHHHHH-HCCCeeEEe----
Confidence 000033367777888888889999999888776433 4553332221101 123555444 557777642
Q ss_pred CCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
+.+.+.||+.. ++.+++..++..+.
T Consensus 414 --~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 414 --GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred --CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 24578899954 68899999998884
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.052 Score=49.06 Aligned_cols=200 Identities=12% Similarity=0.220 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCH
Q 044773 30 RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDD 109 (289)
Q Consensus 30 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~ 109 (289)
-++|+.|+++|.+|++++.+|.+|.+..+-.........- ...-.-+.-+.+|.+| ..++++..+.+.+
T Consensus 269 FDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~G----------iera~SvtwnpHK~~g-aplqCsa~l~r~~ 337 (510)
T KOG0629|consen 269 FDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTG----------IERANSVTWNPHKLMG-APLQCSAFLTREE 337 (510)
T ss_pred cCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccC----------ccccCceeecHHHhhc-CcchhhHHHHHHH
Confidence 3459999999999999999999998743322221111111 0111134567899999 7789988888665
Q ss_pred HHHHHHHhc-------------cccCCC----------ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 110 TVVAAATKM-------------SSFGLV----------SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 110 ~~~~~~~~~-------------~~~~~~----------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
-+...-+.. .++-+. ..+-...+..+=.... .++..+++-+..+++.+.+++
T Consensus 338 gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~G-----fe~~v~k~~~lA~yl~~~lre 412 (510)
T KOG0629|consen 338 GLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQG-----FEAQVDKCLRLAEYLYDRLRE 412 (510)
T ss_pred HHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHh
Confidence 544322211 011111 1122333333333333 355566778888999999988
Q ss_pred c-CCc-eec--CCceEEEEEecCccccCC--ChhhH-------HHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--
Q 044773 167 A-GIS-CLK--SNAGLFCWVDMRHLLSSN--TFEAE-------MELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-- 231 (289)
Q Consensus 167 ~-g~~-~~~--~~~g~~~~i~~~~~~~~~--~~~~~-------~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-- 231 (289)
. ++. +.. |+...+.+-.+|.....- ...-. -.+-+.+.++ |.... |.......+.++|+.+++
T Consensus 413 r~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi-~YqPl~~~~nffr~v~sn~a 490 (510)
T KOG0629|consen 413 REGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKK-GTTMI-GYQPLGDKPNFFRMVISNPA 490 (510)
T ss_pred cccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhc-cceee-Eecccccccchhheecccch
Confidence 7 322 222 443333333333321110 00000 0133445533 55543 111111335689999965
Q ss_pred CCHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~ 247 (289)
.+.++++-+++.|..+
T Consensus 491 ~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 491 LTEADLDFLLDEIERL 506 (510)
T ss_pred hhhhhHHHHHHHHHHh
Confidence 4788999998887664
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.42 Score=43.43 Aligned_cols=201 Identities=15% Similarity=0.188 Sum_probs=111.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe-cCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISD-EIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++-++++.+|+. .|. ...++.+|.+.+++.++++++= |.-+ +.+-.+ + ...+-+|++|
T Consensus 209 ~~~~gv~vQyP~~-~G~--~~~d~~~l~~~~h~~~al~~v~aDpla-L~LL~p--P--------------Ge~GADIvvG 268 (450)
T COG0403 209 GDVFGVLVQYPNT-FGI--VEEDLRALIEAAHSAGALVIVAADPLA-LGLLKP--P--------------GEFGADIVVG 268 (450)
T ss_pred cCeEEEEEecCCC-CCc--cchhHHHHHHHHhhcCCEEEEEechhH-hhccCC--c--------------cccCCceEEe
Confidence 4677889998863 463 3457999999999998776652 2211 111011 1 2335557777
Q ss_pred cC---ccccCCCCceEEEEEecCHHHHH---------------------------HHHh--ccccCCCChHHHHHHHHHh
Q 044773 89 SL---SKDLGLPGFRVGAIYSNDDTVVA---------------------------AATK--MSSFGLVSSQTQYLLSALL 136 (289)
Q Consensus 89 s~---sK~~g~~G~r~G~i~~~~~~~~~---------------------------~~~~--~~~~~~~~~~~q~~~~~~l 136 (289)
+. +=-+|.+|-.+||+.++++.... .+++ ..+.. |+.....++++.+
T Consensus 269 ~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNI-CTnQaLlA~~As~ 347 (450)
T COG0403 269 SAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNI-CTNQALLALAASM 347 (450)
T ss_pred cCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhh-hHHHHHHHHHHHH
Confidence 54 33445567788999886554332 0111 12222 3322222222221
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
-..-....-++++.++..+...++.+.|++. |+++... .+| +.++++. .. ...+..... ..|+.+.
T Consensus 348 y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~--~~-----~~~l~~~~~-~~G~~L~ 417 (450)
T COG0403 348 YAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE--EV-----AEALLAAAI-AGGINLR 417 (450)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch--hH-----HHHHHHHHH-hcCCcee
Confidence 1100014447888888899999999999966 4655544 455 3344442 10 122333332 4466555
Q ss_pred CCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
.- ....+=+++.. .+.++++.+++.+...
T Consensus 418 ~~------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 418 RV------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ee------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 32 23466777743 5789999998887654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.31 Score=47.10 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=85.6
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHH---HHcCC--EEEEecCCCCCc---cCCCC--cc-------------------
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFI---TEKNI--HLISDEIYSGTV---FSSPG--FV------------------- 64 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~~~--~li~Dea~~~~~---~~~~~--~~------------------- 64 (289)
+|+.+-.+-.+|.+=+ +++|+++| +++|+ ++.+|.||+++. +-... +.
T Consensus 281 ~VVataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~ 357 (608)
T TIGR03811 281 GVVGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKK 357 (608)
T ss_pred EEEEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccccccccc
Confidence 4455555667888877 66666665 77887 699999999852 11100 00
Q ss_pred -----ChhhhhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------------C
Q 044773 65 -----SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------------L 123 (289)
Q Consensus 65 -----~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------------~ 123 (289)
.....+. ....-+-+...++|.+. ....+|.++.++..+.+.+.....|. .
T Consensus 358 ~~l~~~~~~~l~-------gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~le 429 (608)
T TIGR03811 358 EYISREVYNAYK-------AISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILE 429 (608)
T ss_pred ccccHhHHHHHh-------cCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCccccccccee
Confidence 0111111 12234456778999886 66789999998887665543322111 1
Q ss_pred CChHHHHHHH--HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cce---ecCCceEEEEE
Q 044773 124 VSSQTQYLLS--ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG-------ISC---LKSNAGLFCWV 182 (289)
Q Consensus 124 ~~~~~q~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-------~~~---~~~~~g~~~~i 182 (289)
++.+.-.++. ..++...+..+-..++.+..-+.++++.+.|.+.+ +++ .+|+-+..++.
T Consensus 430 gSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr 500 (608)
T TIGR03811 430 GSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYV 500 (608)
T ss_pred cCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEE
Confidence 2222221222 22222100123345566666677777888887642 443 45665554443
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.32 Score=43.28 Aligned_cols=157 Identities=12% Similarity=0.075 Sum_probs=89.2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------ccc----cCCCChHHHHHHHHHhCCchHHHHH--HH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------MSS----FGLVSSQTQYLLSALLSDKKFAQNY--IS 147 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------~~~----~~~~~~~~q~~~~~~l~~~~~~~~~--~~ 147 (289)
....++-.+.=|.+|..| ++.++.++..+.+.-.. +.. -...|++...++..+...-.|+..+ ++
T Consensus 189 sk~dviyagaQKnlGpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~ 266 (365)
T COG1932 189 SKYDVIYAGAQKNLGPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLE 266 (365)
T ss_pred hHcceEEEehhhccCccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHH
Confidence 345577788999999777 88888876655443221 100 0112233333322222222222222 46
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCce---ec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISC---LK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~---~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.+.++-+++.+.|.+.+.+.++-. .+ .-+-+.+.+++.+.. .+ ..+...+ +++|+...-|. .-.+
T Consensus 267 ~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~-----ld-~~fv~ea-e~~gl~~lkGh----r~vg 335 (365)
T COG1932 267 ALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAE-----LD-KGFVAEA-EAAGLIYLKGH----RSVG 335 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHH-----HH-HHHHHHH-HHcCCceeccc----cCCC
Confidence 666777788888999998875421 11 122344555555221 11 2345544 56677766662 1234
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
.+|+++.+ .+.++++.+++-++.+.+.
T Consensus 336 GmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 336 GLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred ceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 59999965 7999999999988887665
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.78 Score=40.07 Aligned_cols=210 Identities=12% Similarity=0.113 Sum_probs=111.8
Q ss_pred HhhhCCC-ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 5 AQKRHLK-VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 5 ~~~~~~~-~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
.+.++.+ +.+|+++..+..||+.++ +.+|-..-...|++|=.|-+|+- |.-+..+- .|+.
T Consensus 207 ~IEkngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv----gNVpL~LH------------dWgV 267 (465)
T KOG3846|consen 207 TIEKNGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV----GNVPLQLH------------DWGV 267 (465)
T ss_pred HHHhcCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh----cCCceEEe------------ecCC
Confidence 3444433 455567777999999999 77776555567999999999983 22222211 3466
Q ss_pred eEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc------------------------ccCCCChHHHHHHHHHhCCc
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS------------------------SFGLVSSQTQYLLSALLSDK 139 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~q~~~~~~l~~~ 139 (289)
++.+.+-=|.+..+.-.+|-+...++...+...++. ++. .+.+....++++..+.
T Consensus 268 DFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfR-iSNPpi~~v~al~~SL 346 (465)
T KOG3846|consen 268 DFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFR-ISNPPIIDVVALRSSL 346 (465)
T ss_pred ceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccc-cCCCcHhHHHHHHhhH
Confidence 676666668874222234444443333333222221 222 2222233333444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C-----------CceecC----CceEEEEEecCccccCCChhhHHHH
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEK----A-G-----------ISCLKS----NAGLFCWVDMRHLLSSNTFEAEMEL 199 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~-g-----------~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~ 199 (289)
+. ..+.....++.+.-.+...|+. . | +.+..| +.|.-+.+.++.+.+ ++
T Consensus 347 e~---F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~--------~v 415 (465)
T KOG3846|consen 347 EL---FAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTP--------KV 415 (465)
T ss_pred HH---HHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCch--------HH
Confidence 22 1112223333333333222222 1 2 122222 225555566555432 36
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 200 WKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 200 ~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+.+|- ++|+.+-. ..++.+|+++.. ++-.++..++..|.++++...
T Consensus 416 fqeL~-krGv~~Dk------R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 416 FQELH-KRGVIGDK------RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred HHHHH-HcCeeccc------cCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 66654 66887532 235689999943 688999999999998887654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.36 E-value=3.6 Score=39.72 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=122.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+..+++++.|+-- |. =++.+++++++.+++|--|+.|.+--.-..+-..+ ++.+-++.=--+
T Consensus 680 ~Laa~MvTYPST~-Gv--fE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~p---------------Gd~GaDV~HLNL 741 (1001)
T KOG2040|consen 680 NLAALMVTYPSTH-GV--FEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRP---------------GDIGADVCHLNL 741 (1001)
T ss_pred hhheeEEeccccc-cc--ccccHHHHHHHHHhcCCEEEecCCCccceecccCC---------------ccccccceeecc
Confidence 5678899988532 33 25679999999999999999998764221110110 111223444457
Q ss_pred cccc----CCCCceEEEEEecCHHHHHHHHh-----------ccccCC------CCh---HHHHHHHHHhCCchHHHHHH
Q 044773 91 SKDL----GLPGFRVGAIYSNDDTVVAAATK-----------MSSFGL------VSS---QTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 91 sK~~----g~~G~r~G~i~~~~~~~~~~~~~-----------~~~~~~------~~~---~~q~~~~~~l~~~~~~~~~~ 146 (289)
+|+| |..|-.+|=|.. ++.++.++.. ....+. .|. +..++...+..... +
T Consensus 742 HKTFcIPHGGGGPg~gPIgV-K~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G-----L 815 (1001)
T KOG2040|consen 742 HKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG-----L 815 (1001)
T ss_pred cceeeecCCCCCCCCCccch-hhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc-----c
Confidence 7777 223344555544 2222222110 000110 222 22333334444433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCce--EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSNAG--LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
+...+..--+.+++.++|+.+ .+-+....+- -=..+++........ .++.+++++|. .+|+.-- ...| +-.+
T Consensus 816 ~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~ag-ieavDvAKRL~-DYgFHaP-Tmsw--PV~g 890 (1001)
T KOG2040|consen 816 KDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAG-IEAVDVAKRLM-DYGFHAP-TMSW--PVAG 890 (1001)
T ss_pred chhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccC-CcHHHHHHHHH-hccCCCC-cccc--ccCC
Confidence 455556667888999999987 4444444431 112245554322222 34456888875 7888643 2222 3356
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTLHNQSNH 261 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~~~~~~~ 261 (289)
.+-|-+.. .+.+|+|+.++++-.+-++...-....+++
T Consensus 891 tLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~G~~dk 929 (1001)
T KOG2040|consen 891 TLMIEPTESEDKAELDRFCDALISIREEIAQIEEGRQDK 929 (1001)
T ss_pred ceEeccCccccHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 67777743 577899999999988888776655554444
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.86 Score=39.69 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+++|+|-+.-. ..--=-.++..++++++.+.|+- ++++.+|++|..+.-.-.+ .. -+-+++
T Consensus 164 ~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP-t~---------------vGaDli 227 (416)
T COG4100 164 DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP-TH---------------VGADLI 227 (416)
T ss_pred ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc-cc---------------cchhhh
Confidence 57898866543 22111137888999999999884 8999999999987433222 11 134477
Q ss_pred EecCccccCCCCc--eEEEEEecCHHHHHH
Q 044773 87 VYSLSKDLGLPGF--RVGAIYSNDDTVVAA 114 (289)
Q Consensus 87 i~s~sK~~g~~G~--r~G~i~~~~~~~~~~ 114 (289)
-||+-|--| .|+ --||+.++.+.+...
T Consensus 228 AGSLIKNpG-GgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 228 AGSLIKNPG-GGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred ccceeeCCC-CceeeccceeechHHHHHhh
Confidence 889988876 431 227888865555443
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.40 E-value=4.1 Score=35.36 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------------ccccCCCChHHHH----HHHHHhCCchHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------------MSSFGLVSSQTQY----LLSALLSDKKFA 142 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------------~~~~~~~~~~~q~----~~~~~l~~~~~~ 142 (289)
-....+++.+.-|-+|..|+- .++.++..+...... -+-+.+++....+ +...+++.+.
T Consensus 193 vsk~gvi~aGAQKN~G~aG~T--vvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG-- 268 (370)
T KOG2790|consen 193 VSKFGVIFAGAQKNVGPAGVT--VVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG-- 268 (370)
T ss_pred chhcceEEeccccccCccccE--EEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc--
Confidence 345557788899999977843 344444444332211 1122333333333 3334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
++.+.+.-.+..+.+.+.+.+. |+-..+-+- -|-+.+++. ++.. +.++.....++ ++.-.-|.
T Consensus 269 ---l~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~----~d~L--e~eFLkeA~~~-~mv~LKGh-- 336 (370)
T KOG2790|consen 269 ---LAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIE----KDEL--EAEFLKEAAKE-HMVQLKGH-- 336 (370)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeec----chHH--HHHHHHHHHHh-hhhccccc--
Confidence 3556666778889999999877 654333222 222333333 2111 13455555544 33322222
Q ss_pred CCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 218 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
..-+.+|-|+-+ .+-++.+.+++-++++.+.
T Consensus 337 --RSVGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 337 --RSVGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred --cccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 113578999943 7899999988888887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 289 | ||||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-131 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-123 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-123 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 1e-117 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 4e-85 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-14 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 3e-13 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 3e-11 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 5e-11 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 9e-10 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 2e-09 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 4e-09 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 4e-09 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 4e-09 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 8e-09 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 1e-08 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-08 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-08 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-08 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-08 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 3e-08 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 4e-08 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 1e-07 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-07 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-07 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-07 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 3e-07 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 6e-07 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 9e-07 | ||
| 3g7q_A | 417 | Crystal Structure Of Valine-Pyruvate Aminotransfera | 1e-06 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 1e-06 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-06 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 2e-06 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 5e-06 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 6e-06 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 1e-05 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 1e-05 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 3e-05 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 3e-05 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 4e-05 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 5e-05 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 5e-05 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 1e-04 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 2e-04 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 3e-04 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 3e-04 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 4e-04 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 5e-04 |
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta (Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A Resolution Length = 417 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 391 bits (1007), Expect = e-136
Identities = 206/251 (82%), Positives = 229/251 (91%), Gaps = 1/251 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 240 SMQRLKAFVDS 250
+MQRLKAFV
Sbjct: 421 AMQRLKAFVGE 431
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-134
Identities = 144/250 (57%), Positives = 191/250 (76%), Gaps = 1/250 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AY+ AQK ++KVKG+++TNPSNPLGTT+ ++ L +++F + NIHL+ DEIY+ TVF +
Sbjct: 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT 237
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P FVSI EIL ++ + VHIVYSLSKD+GLPGFRVG IYS +D VV A KMSS
Sbjct: 238 PQFVSIAEILDEQEMTYCN-KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS 296
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
FGLVS+QTQY L+A+LSD+KF N++ E+ RL +RH+ +GLE GI CLK+NAGLFC
Sbjct: 297 FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFC 356
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
W+D+R LL +TF++EM LW+ I+ DVKLN+SPGSS C EPGWFRVCFANM + T+ ++
Sbjct: 357 WMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIA 416
Query: 241 MQRLKAFVDS 250
+ R++ FV
Sbjct: 417 LARIRRFVGV 426
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-32
Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 33/246 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K + + N +NP G M R L LV +E +++SDE+Y SI+E+
Sbjct: 154 TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD--VPSIIEV- 210
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQT 128
+++ V SLSK LPG R+G + +N V + +
Sbjct: 211 ----------YDKGIAVNSLSKTYSLPGIRIGWVAANHQ-VTDILRDYRDYTMICAGVFD 259
Query: 129 QYL-LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRH 186
+ AL Q + N+ L++ L +E+ +S ++ +V +
Sbjct: 260 DLVAQLAL----AHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAV 315
Query: 187 LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLK 245
+ F L + V V PG+ G+ R+ FA ++TL +++L
Sbjct: 316 DMPMEDF-CLQLLQEHGVLLV-----PGN---RFERDGYVRLGFAC-EQETLIKGLEKLS 365
Query: 246 AFVDSI 251
F+
Sbjct: 366 QFLRRF 371
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-30
Identities = 52/261 (19%), Positives = 114/261 (43%), Gaps = 30/261 (11%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF---- 58
++ + + K K ++VTNPSNP G+ SR + +V E + L SDEIY+G VF
Sbjct: 169 EIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKD 228
Query: 59 SSPGFVSIMEILKDRNCENTEVWNRVHIVYS-LSKDLGLPGFRVGAIYSNDDT-----VV 112
+ F S+ + ++ +K+L +PG+R+G + D +
Sbjct: 229 PNATFTSVADFETTVPR----------VILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFL 278
Query: 113 AAATKMSSFGL-VSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GI 169
++ + Q L ALL+ Q ++ + ++++ L + + + G+
Sbjct: 279 EGLKRVGMLVCGPCTVVQAALGEALLNTP---QEHLDQIVAKIEESAMYLYNHIGECIGL 335
Query: 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229
+ ++ + + + ++E ++K++ + + + PG+ H PG+ R+
Sbjct: 336 APTMPRGAMYLMSRIDLEKYRD-IKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTT 392
Query: 230 ANMSEDTLKLSMQRLKAFVDS 250
+ + +++R+KAF
Sbjct: 393 T-RPVEVYREAVERIKAFCQR 412
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 7e-30
Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 23/248 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K ++V NPSNP G+ S+ L ++ + + +++DEIY VFS + + +
Sbjct: 191 KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND------DTVVAAATKMSSFGL- 123
D + L+K +PG+R+G I +D + + K+S L
Sbjct: 251 TD---------VPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILG 301
Query: 124 VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWV 182
+ Q L ++L + LK L G+ ++ + ++ V
Sbjct: 302 PCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMV 359
Query: 183 DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242
+ FE ++E +++V + ++ P + P + RV + E + +
Sbjct: 360 GIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACS 415
Query: 243 RLKAFVDS 250
R++ F +
Sbjct: 416 RIQEFCEQ 423
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-29
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 22/243 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ KG++++NP NP G ++E+ LV + LI DE+YS VF F S + I
Sbjct: 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIE 232
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-VSSQTQ 129
D +V ++ S+SK G RVG + + ++ +++ A K++ L Q
Sbjct: 233 SD----------KVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQ 282
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLL 188
LL+ ++ ++ ++R ++ LE+ K + + ++ +
Sbjct: 283 IGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-VE 338
Query: 189 SSNTFEAEMELWKKIVYDVKLNISPGS---SCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
+ F A L + ++P R+ +D L ++ L
Sbjct: 339 DAEEF-ARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAIDVLM 396
Query: 246 AFV 248
+
Sbjct: 397 EGL 399
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-28
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 23/242 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + V++ P NP T + + L I I +ISDE+Y FS G S++
Sbjct: 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH- 221
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
++ R V S K + G++VG + + A K+ + S T
Sbjct: 222 -------PQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP-ISAEIRKVHQYLTFSVNTPA 273
Query: 129 QY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
Q L L + + +Q+ LV+ L ++ + L F VD +
Sbjct: 274 QLALADML----RAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV 329
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRLK 245
+ ++E + + + + P S R+CFA E TL + +RL+
Sbjct: 330 ----STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 384
Query: 246 AF 247
Sbjct: 385 QL 386
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-28
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 32/257 (12%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + +++ +P NP G +S EL + N+ +I+DE+Y VF + +
Sbjct: 160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF- 218
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
+ R + S +K G+++G + ++A +
Sbjct: 219 -------DGMAERTITISSAAKMFNCTGWKIGWACGPAE-LIAGVRAAKQYLSYVGGAPF 270
Query: 129 QY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
Q + AL +++ + L+ R +L +GL + G + S F D R L
Sbjct: 271 QPAVALAL----DTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPL 326
Query: 188 LSSNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPG----------WFRVCFANMSEDT 236
++ E + V + P S+ C R F +DT
Sbjct: 327 ----GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDT 381
Query: 237 LKLSMQRLKAFVDSITT 253
L +++RL + T
Sbjct: 382 LDEAIRRLSVLAERPAT 398
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-28
Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 35/266 (13%)
Query: 2 YQL--AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS 59
Q A L + G++V +P+NP GT + + L+ + ISDEIY G +
Sbjct: 150 LQPVPADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYE 209
Query: 60 SPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
+ V+ +E L D V N S SK + G+RVG + +D V +++
Sbjct: 210 AK-AVTALE-LTDE----CYVIN------SFSKYFSMTGWRVGWMVVPED-QVRVVERIA 256
Query: 120 S--FGLVSSQTQYL-LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSN 175
F +Q L+AL D + N K + ++ L KAG +
Sbjct: 257 QNMFICAPHASQVAALAALDCDA-----ELQANLDVYKANRKLMLERLPKAGFTRIAPPD 311
Query: 176 AGLFCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSS--CHCTEPGWFRVCFANM 232
+ + D+ L S F A +I+ + ++PG G R +A
Sbjct: 312 GAFYVYADVSDLTDDSRAF-AA-----EILEKAGVAVTPGLDFDPERGA-GTLRFSYAR- 363
Query: 233 SEDTLKLSMQRLKAFVDSITTTLHNQ 258
+ ++ + RL+AF+ + H+
Sbjct: 364 ATADIEEGLDRLEAFMQARGEGHHHH 389
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-28
Identities = 52/245 (21%), Positives = 110/245 (44%), Gaps = 24/245 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K + +++ +P NP G +++ +L + +F+ E ++ +ISDE+Y ++ SI +
Sbjct: 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL- 218
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--VSSQT 128
++ R V SK + G+R+G + + ++ K + +
Sbjct: 219 -------DGMFERTITVNGFSKTFAMTGWRLGFVAAPSW-IIERMVKFQMYNATCPVTFI 270
Query: 129 QY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRH 186
QY AL ++ + + E +K +R + + L + G+ +K G F + +R
Sbjct: 271 QYAAAKALKDERSW--KAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK-GAFYIFPRIRD 327
Query: 187 L-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
L+S F +E+ L + V V PGS+ G+ R+ +A + + L+ +M R++
Sbjct: 328 TGLTSKKF-SELMLKEARVAVV-----PGSAFGKAGEGYVRISYAT-AYEKLEEAMDRME 380
Query: 246 AFVDS 250
+
Sbjct: 381 RVLKE 385
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 7e-28
Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 29/249 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K + V NP+NP G + L ++N E I +ISDEIY + +S +
Sbjct: 174 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLT 232
Query: 71 KDRNCENTEVWNRVHIVYS-LSKDLGLPGFRVG-AIYSNDDTVVAAATKM-----SSFGL 123
KD IV + LSK G+R+G + + + ++ +
Sbjct: 233 KDVPV----------IVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLC 282
Query: 124 VSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCW 181
++ Q+ ++ L +Y+ E K+LK+R + L + GIS K + +
Sbjct: 283 PNTPAQFAAIAGLTGP----MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIF 338
Query: 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241
+ ++ + E ++++ + GS G FR F + L+ +M
Sbjct: 339 PK----IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAM 393
Query: 242 QRLKAFVDS 250
R + F+
Sbjct: 394 DRFEKFMKE 402
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-27
Identities = 53/248 (21%), Positives = 106/248 (42%), Gaps = 30/248 (12%)
Query: 11 KVKGVLVTN-PSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI 69
K + +++ PSNP + + +V + ++ ++ D Y+ V+ SIM++
Sbjct: 172 KPR-MMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQV 230
Query: 70 --LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQ 127
KD E ++LSK + G+R+G + N + +V+A ++ S+
Sbjct: 231 PGAKDIAVE----------FFTLSKSYNMAGWRIGFMVGNPE-LVSALARIKSY-HDYGT 278
Query: 128 TQYL----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
L ++AL D Q + + ++ +QR LV GL +AG A ++ W
Sbjct: 279 FTPLQVAAIAALEGD----QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAK 334
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFANMSEDTLKLSMQ 242
+ +E KK++ D K+++SPG + R + D L+ +++
Sbjct: 335 ---IPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGD-DHVRFALI-ENRDRLRQAVR 389
Query: 243 RLKAFVDS 250
+KA +
Sbjct: 390 GIKAMFRA 397
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-27
Identities = 54/255 (21%), Positives = 91/255 (35%), Gaps = 44/255 (17%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN------IHLISDEIYSGTVFSSPGFV 64
+GV++ +P+NP GT S + L + + +K+ I +I+DE Y V+
Sbjct: 172 HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP 231
Query: 65 SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG------AIYSNDDTVVAAATKM 118
+ + ++ + YS SK L LPG R+G +Y + A
Sbjct: 232 FVTKY-----------YDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAG 280
Query: 119 SSFGLV--SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
+ G V S Q ++ Y K+ L GL + G C K +
Sbjct: 281 RALGYVCAPSLFQKMIVKCQGATGDINAY--------KENRDLLYEGLTRIGYHCFKPDG 332
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236
+ +V SN F E + ++ I C PGW R+ + +
Sbjct: 333 AFYMFVKALE-DDSNAF-CEKAKEEDVL------IVAADGFGC--PGWVRISYCV-DREM 381
Query: 237 LKLSMQRLKAFVDSI 251
+K SM +
Sbjct: 382 IKHSMPAFEKIYKKY 396
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 28/254 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +++ P NPLG +R EL ++ + + + ISDE+Y V++ V I +
Sbjct: 167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATL- 225
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
+W R + S K + G+++G ++ + + T
Sbjct: 226 -------PGMWERTITIGSAGKTFSVTGWKLGWSIGPAH-LIKHLQTVQQNSFYTCATPL 277
Query: 129 QY----LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
Q + + Y + K L+ + ++V L G+ + + G F D+
Sbjct: 278 QAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADV 337
Query: 185 RHLLSSNTFEAEMELW-----KKIVYDVKLNISPGSS------CHCTEPGWFRVCFANMS 233
L + + E + K + KL P S+ E R CF
Sbjct: 338 SSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFE-KLVRFCFIK-K 395
Query: 234 EDTLKLSMQRLKAF 247
+ TL + + +A+
Sbjct: 396 DSTLDAAEEIFRAW 409
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
K K + +T P+NP G+T ++ + + + ++ D Y F + SI+
Sbjct: 181 KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK-NPSILASE 239
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQ- 127
KD E +YSLSK + GFRVG N D ++ A K + +
Sbjct: 240 NGKDVAIE----------IYSLSKGYNMSGFRVGFAVGNKD-MIQALKKYQTH-TNAGMF 287
Query: 128 --TQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
Q + AL +++ E K R + + L KA + + + G++ W++
Sbjct: 288 GALQDAAIYALNHY----DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLET 343
Query: 185 RHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFANMSEDTLKLSMQR 243
S FE + +V + + ++PG + R+ A + + L + R
Sbjct: 344 PPGYDSEQFE------QFLVQEKSILVAPGKPFGENGN-RYVRISLA-LDDQKLDEAAIR 395
Query: 244 LKAF 247
L
Sbjct: 396 LTEL 399
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 44/259 (16%), Positives = 96/259 (37%), Gaps = 28/259 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K +++ P+NPLG SR EL L+ + + ++ I+DE+Y V+ +SI +
Sbjct: 174 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASL- 232
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
+W R + S K G++VG + D ++ + + T
Sbjct: 233 -------PGMWERTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVFHCPTQS 284
Query: 129 QY-LLSALLSDKKFAQN---YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
Q + + ++ + Y + + +++ ++ L+ G+ + F D+
Sbjct: 285 QAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDI 344
Query: 185 RHLLSSNTF-------EAEMELWKKIVYDVKLNISPGSSCHCTEP-----GWFRVCFANM 232
+ K ++ + L P S + + R CF
Sbjct: 345 SDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK- 403
Query: 233 SEDTLKLSMQRLKAFVDSI 251
E TL+ ++L+ + +
Sbjct: 404 DEATLQAMDEKLRKWKVEL 422
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-27
Identities = 43/246 (17%), Positives = 93/246 (37%), Gaps = 34/246 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
+ K +L+ P+NP G + + + LI D Y V+ S + +
Sbjct: 158 EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALP 216
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT 128
K+R E ++SLSK L GFR+G +++ +A ++ + +Q
Sbjct: 217 GAKERVVE----------LFSLSKSYNLAGFRLGFALGSEE-ALARLERVKGV-IDFNQY 264
Query: 129 QYL----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
+ + AL + + + + ++R + L K +S L A ++ W +
Sbjct: 265 AGVLRMGVEALKTP----KEVVRGYARVYRERALGMAEAL-KGVLSLLPPRATMYLWGRL 319
Query: 185 RHLLSSNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ F + + + ++PG + G+ R+ + L + +R
Sbjct: 320 PEGVDDLEF-GLRLVERGVA------LAPGRGFGPGGK-GFVRIALV-RPLEELLEAAKR 370
Query: 244 LKAFVD 249
++ +D
Sbjct: 371 IREALD 376
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 6e-27
Identities = 48/258 (18%), Positives = 94/258 (36%), Gaps = 40/258 (15%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
++ + + P+NP G ++ E+ L +I LI D Y G F + +
Sbjct: 206 RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAY-GMPFPNIIYSDAHLNW 264
Query: 71 KDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV--SS 126
+ + SLSK +GLPG R G I ++ V+ A + M++ + +
Sbjct: 265 DNN------------TILCFSLSK-IGLPGMRTGIIVADAK-VIEAVSAMNAVVNLAPTR 310
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK----AGISCLKSNAGLFCWV 182
+ + L+++ + Q +E K +++ V L++ + K +F W+
Sbjct: 311 FGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWL 370
Query: 183 DMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP--------GWFRVCFANMS 233
+ L +S+ E K + V P R+ A
Sbjct: 371 WFKDLPISTLDL-YERLKAKGTLI-V-----PSEYFFPGVDVSDYQHAHECIRMSIA-AD 422
Query: 234 EDTLKLSMQRLKAFVDSI 251
E TL ++ + V +
Sbjct: 423 EQTLIDGIKVIGEVVREL 440
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-27
Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 24/253 (9%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
L + + L +NP+NP G S E+ + +I+D++YS ++
Sbjct: 171 GLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS 230
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
+ + V + SK L G+R+G + + ++A K+ +
Sbjct: 231 YTHLRAE-------AAVDAENVVTIMGPSKTESLSGYRLGVAFGSRA-IIARMEKLQAIV 282
Query: 123 L--VSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGL 178
+ +Q L ++ + R + +L+ L G+ AG
Sbjct: 283 SLRAAGYSQAVLRGWFDEA----PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGS 338
Query: 179 FCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTL 237
+ + + L ++ F ++ + V PG+ R+ F+ +
Sbjct: 339 YLFPRLPKLAVAPAEF-VKILRLQAGVVVT-----PGTEFSPHTADSVRLNFSQ-DHEAA 391
Query: 238 KLSMQRLKAFVDS 250
+ +R+ V+
Sbjct: 392 VAAARRIVTLVER 404
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 54/257 (21%), Positives = 94/257 (36%), Gaps = 27/257 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K K +++ P NPLG M R EL ++ N + N+ +SDE+Y VF + I +
Sbjct: 182 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL- 240
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
+W R + S K L G+++G Y + ++ + + + T
Sbjct: 241 -------PGMWERTITIGSAGKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYTCATPI 292
Query: 129 QY----LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
Q L K + Y + L + + S L + G++ G F D
Sbjct: 293 QEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADW 352
Query: 185 RHLLSSNTFEAE------MELWKKIVYDVKLNISPGSSCHCTEP-----GWFRVCFANMS 233
L S E K + V L P S+ + + R CF
Sbjct: 353 SSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-K 411
Query: 234 EDTLKLSMQRLKAFVDS 250
++ L+ + + L+ + S
Sbjct: 412 DENLQKAAEILRKWKGS 428
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-26
Identities = 48/265 (18%), Positives = 97/265 (36%), Gaps = 26/265 (9%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
Q + K K V++ P NP+G +R EL L N + N+ +ISDE+Y F +
Sbjct: 193 QFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYF-TDS 251
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
F I + E+ V S K G+R+G + S + +++ A K +
Sbjct: 252 FTRIATLSP-------EIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRI 304
Query: 123 LVSSQT--QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
+S + Q + + + Y + ++ + + S ++ G+ F
Sbjct: 305 CFASPSPLQEACANSI-NDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFV 363
Query: 181 WVDMRHL---------LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-----PGWFR 226
VD + + + ++ ++ + P + + E R
Sbjct: 364 LVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLR 423
Query: 227 VCFANMSEDTLKLSMQRLKAFVDSI 251
+ L+ +++RLK D +
Sbjct: 424 FAVCK-DDAYLENAVERLKLLKDYL 447
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-26
Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 29/245 (11%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + +L+ P NP G EL + ++ LISDE+Y + + E
Sbjct: 152 RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFA 210
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQT-- 128
+ R V S K L G+RVG I + + M + S+ T
Sbjct: 211 PE----------RTFTVGSAGKRLEATGYRVGWIVGPKE-FMPRLAGMRQWTSFSAPTPL 259
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
Q ++ L + + + ++ ++R L GL G+ F ++
Sbjct: 260 QAGVAEALKLAR-REGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWD 318
Query: 189 SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRLKA 246
+ ++V + ++ + P S+ + +P FR F +E+ L L+++RL
Sbjct: 319 A-----------FRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGR 366
Query: 247 FVDSI 251
V+S
Sbjct: 367 VVNSP 371
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-25
Identities = 57/250 (22%), Positives = 105/250 (42%), Gaps = 29/250 (11%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
L + K K +++ +PSNPLG + R + F E ++ISDEIY+G V+
Sbjct: 146 SLEEALSDKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK- 200
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
S +E E + ++ SK + G+R+G + SND+ ++ A K+
Sbjct: 201 CYSAIEF--------DENLEKTILINGFSKLYAMTGWRIGYVISNDE-IIEAILKLQQNL 251
Query: 123 L--VSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
+ +QY L A + + I+ K +R R ++ ++ G +
Sbjct: 252 FISAPTISQYAALKAFEKE---TEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYY 308
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
+ ++ F A L +K V PG + R+ +AN S + +K
Sbjct: 309 VFPNIG--EDGREF-AYKLLKEKFVALT-----PGIGFGSKGKNYIRISYAN-SYENIKE 359
Query: 240 SMQRLKAFVD 249
++R+K F++
Sbjct: 360 GLERIKEFLN 369
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 39/265 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
+ + +P+NP G +R +L LVNF + L+ D Y+ + + +I EI
Sbjct: 209 RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIP 268
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-------AIYSNDDTVVAAATKMSS- 120
+ E S SK G G R+G Y+N + V A ++ +
Sbjct: 269 GADEVAIE----------TCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTT 318
Query: 121 -FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
F S+ Q A L + ++ K K+ + L + + G S + +
Sbjct: 319 CFNGASNIVQAGGLACLQPE--GLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPY 376
Query: 180 CWV---DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC-HCTEPGWFRVCFANMSED 235
WV S +++ +I+ + +PGS E G+ R S +
Sbjct: 377 IWVGFPGK----PS------WDVFAEILERCNIVTTPGSGYGPAGE-GFVRASAFG-SRE 424
Query: 236 TLKLSMQRLKAFVDSITTTLHNQSN 260
+ +++R K + H+ +
Sbjct: 425 NILEAVRRFKEAYGKRNASHHHHHH 449
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 35/270 (12%), Positives = 78/270 (28%), Gaps = 49/270 (18%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-----SSPGFVS 65
+ ++ +NP+NP M+ EL ++ T+ ++ +I D Y G F +
Sbjct: 182 QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLY 241
Query: 66 IMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL-- 123
+ + + S SK G R+G + + +
Sbjct: 242 QPSVA--------NYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRL 293
Query: 124 -----------------VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166
+ Q+ ++A+L + ++ ++ R +
Sbjct: 294 RFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD 353
Query: 167 AGISCLKSNAG--------LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218
G + + G F +L +K V I+ ++
Sbjct: 354 NGFNIVYDKDGNEPLADGFYFT--------VGYKGMDSSKLIEKFVRYGMCAITLKTTGS 405
Query: 219 CTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248
R+C + + E +RL+
Sbjct: 406 KRNEA-MRICTSLLPESQFPDLEKRLQMLN 434
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 4e-24
Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 37/261 (14%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ + V+ P+NP G ++ EL L + NI L+ D Y G F
Sbjct: 172 FEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAY-GVPFPGII 230
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
F + I+ SLSK LGLPG R G I +ND + A M+
Sbjct: 231 FSEARPLWNPN------------IILCMSLSK-LGLPGSRCGIIIANDK-TITAIANMNG 276
Query: 121 FGLV--SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA----GISCLKS 174
+ ++ ++ + + K QR ++ ++ + + K
Sbjct: 277 IISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKP 336
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW-------FRV 227
+F W+ + L + + + ++ V PG R+
Sbjct: 337 EGAIFLWLWFKDLPITTELLYQRLKARGVLM-V-----PGHYFFPGLDKPWPHTHQCMRM 390
Query: 228 CFANMSEDTLKLSMQRLKAFV 248
+ D ++ ++ L +
Sbjct: 391 NYVP-EPDKIEAGVKILAEEI 410
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-23
Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 33/252 (13%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
++ K K VL+ +P+NP G R L LV ++N ++ISDE+Y V++
Sbjct: 166 EVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE- 224
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
F SI+++ +E ++R+ + SK + G+RVG + S++ V A +K+ S
Sbjct: 225 FTSILDV--------SEGFDRIVYINGFSKSHSMTGWRVGYLISSEK-VATAVSKIQSHT 275
Query: 123 L--VSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
+++ QY L AL D S + K+R +V L+K G+ ++ G F
Sbjct: 276 TSCINTVAQYAALKALEVD-------NSYMVQTFKERKNFVVERLKKMGVKFVEPE-GAF 327
Query: 180 -CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238
+ +R F E L +K V V PGS+ +PG+ R+ FA S + L
Sbjct: 328 YLFFKVRG--DDVKF-CERLLEEKKVALV-----PGSA--FLKPGFVRLSFAT-SIERLT 376
Query: 239 LSMQRLKAFVDS 250
++ R++ F++S
Sbjct: 377 EALDRIEDFLNS 388
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-23
Identities = 45/251 (17%), Positives = 103/251 (41%), Gaps = 29/251 (11%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
++ + + K ++V +P+NP G + L L E + +L+SDEIY ++
Sbjct: 156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY-EGE 214
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM---- 118
S + + T N +K + G+R+G + V+ A +
Sbjct: 215 HFSPGRVAPEH----TLTVNGA------AKAFAMTGWRIGYACGPKE-VIKAMASVSRQS 263
Query: 119 -SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG 177
+S + Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ +
Sbjct: 264 TTS---PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320
Query: 178 LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTL 237
+ +D + AE L + + + PG+ G R+ +A SE+ L
Sbjct: 321 FYVLMDTSPIAPDEVRAAERLL------EAGVAVVPGTDFAA--FGHVRLSYAT-SEENL 371
Query: 238 KLSMQRLKAFV 248
+ +++R +
Sbjct: 372 RKALERFARVL 382
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-23
Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 35/259 (13%)
Query: 11 KVKGVLVTN-PSNPLGTTMSRNELNLLVNFITE-----KNIHLISDEIYSGTVFSSPGFV 64
K K +++ N P+NP G T + E+ +V I + + D+ Y G +
Sbjct: 188 KDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQ 247
Query: 65 SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAI---YSNDDT--VVAAATKMS 119
S+ L + + + +K+ GFRVG + S+ T V+ A K
Sbjct: 248 SLFTALTNLH----SNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL 303
Query: 120 SFGLVSS---QTQYLLSALLSD----KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCL 172
+SS TQ + +L + K + I K+R + + + +
Sbjct: 304 IRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAY 363
Query: 173 KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232
N+G F + + + + + K + + ++ R+ F+ +
Sbjct: 364 DFNSGYFMAIKVHD-VDPEAL-RKHLIDKYSIGVI-----ALNATD------IRIAFSCV 410
Query: 233 SEDTLKLSMQRLKAFVDSI 251
+D + + +D +
Sbjct: 411 EKDDIPHVFDSIAKAIDDL 429
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 3e-23
Identities = 42/267 (15%), Positives = 83/267 (31%), Gaps = 45/267 (16%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
A + + +VT+P+NP G K I D +Y
Sbjct: 186 AANYVNVSNPEQYIEMVTSPNNPEGLLRHA----------VIKGCKSIYDMVYYW----- 230
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P + I + +++++SK G G R G D++V +
Sbjct: 231 PHYTPI-----------KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT 279
Query: 121 FGL--VSSQTQYL-LSALLSDKKFAQNYISENK-------KRLKQRHRKLVSGLEKAG-I 169
+TQ L L + + K+L++R + + L+++
Sbjct: 280 KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRF 339
Query: 170 SCLKSNAGLFCWVDMRHLLSSNTF------EAEMELWKKIVYDVKLNISPGSSCHCTEPG 223
S + +C R S ++ E + + + ++N G
Sbjct: 340 SYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSR 398
Query: 224 WFRVCFANMSEDTLKLSMQRLKAFVDS 250
+ R+ ++D M LK V +
Sbjct: 399 YVRLSLIK-TQDDFDQLMYYLKDMVKA 424
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 8e-23
Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 34/250 (13%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
+ + +P+NP G +R +L LV F + ++ D Y+ + SI EI
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIP 256
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---------KMS 119
++ E S S G G R+G + + +
Sbjct: 257 GAEEVAME----------TASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICT 306
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
F S+ +Q A L+ + + + K+ ++ G +
Sbjct: 307 CFNGASNISQAGALACLTPE--GLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPY 364
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDTLK 238
WV + S +++ +I+ + +PGS E G+ RV + +
Sbjct: 365 VWVHFPNQSS-------WDVFAEILEKTHVVTTPGSGFGPGGE-GFVRVSAFG-HRENIL 415
Query: 239 LSMQRLKAFV 248
+ +R K
Sbjct: 416 EACRRFKQLY 425
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 3e-22
Identities = 55/253 (21%), Positives = 108/253 (42%), Gaps = 24/253 (9%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
Q+ Q K K ++ PSNP G + +E+ + E + ++SDEIY ++
Sbjct: 155 QIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ 214
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-- 120
+SI + E + R + +K + G+RVG + +V AATK+
Sbjct: 215 HLSIGAA-------SPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKIQGHS 266
Query: 121 FGLVSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGL 178
V + QY ++A + Q+ + E +R R ++ L G+ C K +
Sbjct: 267 TSNVCTFAQYGAIAAYENS----QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238
+ + + + T + ++ +++ ++ PG++ R+ +A DT+K
Sbjct: 323 YMFPSI-----AKTGRSSLDFCSELLDQHQVATVPGAA--FGADDCIRLSYAT-DLDTIK 374
Query: 239 LSMQRLKAFVDSI 251
M+RL+ F+ I
Sbjct: 375 RGMERLEKFLHGI 387
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-21
Identities = 52/266 (19%), Positives = 106/266 (39%), Gaps = 26/266 (9%)
Query: 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVS 65
K H K + + NP NP G SR + +++F E+ + L++DE+Y V+S F S
Sbjct: 231 KDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHS 290
Query: 66 IMEILKDRNCENTEVWNRVHIV--YSLSKD-LGLPGFRVG--AIYSNDDTVVAAATKMSS 120
++L + E + V + +S SK +G G+R G + + + K+ S
Sbjct: 291 FKKVLYEM---GPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS 347
Query: 121 FGLVSSQT-QYLLSALLSDKKFA----QNYISENK---KRLKQRHRKLVSGLEK-AGISC 171
L + Q + +++ + + E + L ++ + + GI C
Sbjct: 348 VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHC 407
Query: 172 LKSNAGLFCWVDMRHLLSSNT------FEAEMELWKKIVYDVKLNISPGSSCHCTEPGW- 224
++ + + + +M K++ + + + PGS E +
Sbjct: 408 NPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYH 467
Query: 225 FRVCFANMSEDTLKLSMQRLKAFVDS 250
FR+ + LK +Q++K F +
Sbjct: 468 FRMTILP-PVEKLKTVLQKVKDFHIN 492
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 38/251 (15%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI- 69
+ + + +P+NP GT +++++L +V++ E I ++ D YS + SI EI
Sbjct: 163 HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIP 222
Query: 70 -LKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-------AIYSNDDTVVAAATKMSS- 120
+ E + S SK LG G R+G Y++ V+ + S
Sbjct: 223 DARFCAIE----------INSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLST 272
Query: 121 -FGLVSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGL 178
F S Q ++ L + E ++ L L G
Sbjct: 273 TFNGASIPAQEAGVAGLSILPQ------LEAIHYYRENSDLLRKALLATGFEVFGGEHAP 326
Query: 179 FCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSS-CHCTEPGWFRVCFANMSEDT 236
+ WV +S +L+ + + + I+PG G+ R +
Sbjct: 327 YLWVKPTQANISD------RDLFDFFLREYHIAITPGIGFGRSGS-GFVRFSSLG-KRED 378
Query: 237 LKLSMQRLKAF 247
+ + +RL+
Sbjct: 379 ILAACERLQMA 389
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 3e-21
Identities = 55/317 (17%), Positives = 100/317 (31%), Gaps = 71/317 (22%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHL--ISDEIYSGTVFSS 60
+L + + +K NPSNP M + L + N + E L ++D++Y
Sbjct: 237 ELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD-- 294
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMS 119
F S+ I + +VYS SK G G+R+G + ++ V A K+
Sbjct: 295 -DFQSLFAICPE----------NTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQ 343
Query: 120 SFGLVSSQTQY-LLSALLSDKKF------------------------------------- 141
V+ +Y L + KF
Sbjct: 344 ESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403
Query: 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKS-NAGLF-CWVDMRHLLSSNTFEAEMEL 199
+ K+L +R + + G+ L+ NA + +D++ + + EA E
Sbjct: 404 EADEYKHTLKQLIRRRETTL--YRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEW 461
Query: 200 WKKIVYDVKLNIS----------PGSSCHCTEPGWFRVCFANMSEDTLKLSMQR-LKAFV 248
K + PG R AN + ++ R L+
Sbjct: 462 AVKQSSTGDMLFRIADETGIVLLPGRGFGSNR-PSGRASLAN-LNEYEYAAIGRALRKMA 519
Query: 249 DSITTTLHNQSNHQSIK 265
D + Q+ + +
Sbjct: 520 DELYAEYSGQAQNLKLA 536
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 7e-21
Identities = 53/270 (19%), Positives = 106/270 (39%), Gaps = 23/270 (8%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS- 59
+ A+ R + V+ ++V NP NP G ++ +V F + + L++DE+Y ++
Sbjct: 227 QLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVD 286
Query: 60 SPGFVSIMEILKDRNCENTEVWNRVHIVYSLSK-DLGLPGFRVG--AIYSNDDTVVAAAT 116
+ F S +I++ ++ + S+SK G G R G I V
Sbjct: 287 NKKFHSFKKIVRSLGYGEEDL--PLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIY 344
Query: 117 KMSSFGLVSS-QTQYLLSALLSDKKFAQ----NYISENK---KRLKQRHRKLVSGLEK-A 167
K++S L S+ Q L S +++ K + +Y +E L +R + L K
Sbjct: 345 KIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE 404
Query: 168 GISCLKSNAGLFCWVDMRHLL------SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221
GI+C ++ ++ + + + + +++ + + PGS
Sbjct: 405 GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVP 464
Query: 222 -PGWFRVCFANMSEDTLKLSMQRLKAFVDS 250
FR ED + + R F ++
Sbjct: 465 GTWHFRCTILP-QEDKIPAVISRFTVFHEA 493
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 87.7 bits (217), Expect = 5e-20
Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 38/254 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
LVT+P+NP GT +VN + +I D Y ++ I
Sbjct: 157 GPYIELVTSPNNPDGTIRET-----VVNRPDDDEAKVIHDFAYYWPHYT--------PIT 203
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQ 127
+ ++ + + ++++ SK G G R+G D V + ++S G VS +
Sbjct: 204 RRQD-------HDI-MLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIG-VSKE 254
Query: 128 TQY-------LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
+Q +L + ++N+ ++ +K R KL ++++ L FC
Sbjct: 255 SQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFC 314
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDV----KLNISPGSSCHCTEPGWFRVCFANMSEDT 236
+ L S F + + K+ G C ++ RV + ED
Sbjct: 315 NYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCG-SDKKHVRVSMLS-REDV 372
Query: 237 LKLSMQRLKAFVDS 250
+ ++RL
Sbjct: 373 FNVFLERLANMKLI 386
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 48/250 (19%), Positives = 100/250 (40%), Gaps = 30/250 (12%)
Query: 5 AQKRHLKVKGVLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ + KVK ++ T P+ NP+G TMS L+ ++ ++ +I D Y+ +
Sbjct: 168 LKAKGQKVK-LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD 226
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVA--AATKM 118
V + + + RV + +LSK LG GFR+G I + + ++ K
Sbjct: 227 IVPLKALDNE---------GRV--IVAGTLSKVLG-TGFRIGWIIAEGE-ILKKVLMQKQ 273
Query: 119 SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK--AGISCLKSNA 176
+ +QY+ L F + ++ K++ ++ LE K A
Sbjct: 274 PIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIA 333
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSE 234
G+F + + +++ + + PG + E G R+ F+ S+
Sbjct: 334 GMFVMFFLPEGADG------ISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSK 387
Query: 235 DTLKLSMQRL 244
+ + + +++L
Sbjct: 388 EEIPIGIKKL 397
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 32/238 (13%)
Query: 18 TNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 75
T P+ NP G TM+ + L+ +E + ++ D+ Y +S I + +
Sbjct: 222 TVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE--- 278
Query: 76 ENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSFGLVSSQTQYLL 132
RV +Y + SK L PGFR+G + + + K S+ + Q +
Sbjct: 279 ------GRV--IYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVA 329
Query: 133 SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLS 189
+ + +I E +K K R ++ LE+ G+ K G+F WV + +
Sbjct: 330 WRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGID 388
Query: 190 SNT-FEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLSMQRL 244
S E ++ K + Y PG + + R+ F + ED + ++RL
Sbjct: 389 SKKMLERAIK--KGVAY------VPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 5e-17
Identities = 44/256 (17%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 7 KRHLKVKGVLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFV 64
KR + + L PS NP G L+ + E+ + ++ D+ Y F
Sbjct: 159 KRE-RPR-FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLP 216
Query: 65 SIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSF 121
S+ E+ ++ ++Y S SK L PG RV ++ + + K +
Sbjct: 217 SLFELAREAGYP--------GVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGAD 267
Query: 122 GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGL 178
Q L+ LL + + ++ +++ + ++ L++ + + G+
Sbjct: 268 LHTPMLNQMLVHELLKEG--FSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGM 325
Query: 179 FCWVDMRHLLSSNT-FEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSED 235
F W+++ LS+ F +E + + + PG G R+ +A + +
Sbjct: 326 FVWMELPKGLSAEGLFRRALE--ENVAF------VPGGPFFANGGGENTLRLSYATLDRE 377
Query: 236 TLKLSMQRLKAFVDSI 251
+ ++RL + +
Sbjct: 378 GIAEGVRRLGRALKGL 393
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 6e-17
Identities = 51/314 (16%), Positives = 97/314 (30%), Gaps = 73/314 (23%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFSSP 61
++ + + +K ++V NP+NP N LN + + + + +ISDE+Y V
Sbjct: 236 EIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP--- 292
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA-TKMSS 120
F SI ++ +VYS SK G G+R+G I N+ V +
Sbjct: 293 NFKSIYSVVPY----------NTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDK 342
Query: 121 FGLVSSQTQYLLSALLSDK----------------------------------------- 139
L +Y L DK
Sbjct: 343 VELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTS 402
Query: 140 ---KFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAE 196
YI +K + +R+ +L ++ +N + +D+ L + E
Sbjct: 403 TNGGSDDPYIDIARKLVSERYDQLHDAMQAPKD-ETDTNTHYYSLIDIYRLAEK-IYGKE 460
Query: 197 MELWKKIVYDV-----------KLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
+ ++ + + G G RV AN+ + L +++
Sbjct: 461 FRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKP-GELRVSQANLPTEDYALIGKQVL 519
Query: 246 AFVDSITTTLHNQS 259
+ +
Sbjct: 520 ELLKEYYEEFKQNN 533
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 6e-17
Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 35/253 (13%)
Query: 5 AQKRHLKVKGVLVTNPS--NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ +VK + + NP G T S + LV + ++ ++ D+ Y +
Sbjct: 181 KNGKIKQVK-FIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET 239
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMS 119
I +I +V + SK L PG R+G + + + + K S
Sbjct: 240 VDPIFKIGGPE-----------RVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQS 287
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-----AGISCLKS 174
+ + T L + L + + +++ +++ LE+ G+ +KS
Sbjct: 288 ADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS 346
Query: 175 NAGLFCWVDMRHLLSSNT-FEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFAN 231
GLF W+ + + FE KK+ Y PG + R+ F
Sbjct: 347 EGGLFIWLTLPEGFDTWEMFEYAKR--KKVFY------VPGRVFKVYDEPSPSMRLSFCL 398
Query: 232 MSEDTLKLSMQRL 244
++ + ++RL
Sbjct: 399 PPDEKIVEGIKRL 411
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 6e-17
Identities = 38/252 (15%), Positives = 82/252 (32%), Gaps = 36/252 (14%)
Query: 11 KVKGV-LVTNPSNPLGTTMS---RNELNLLVNFITEKNIHLISDEIYSGTVFS--SPGFV 64
+VKG+ +V SNP G T++ L+ + + ++ D Y+ + P +
Sbjct: 180 QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMET--AAPDFRVVWDNAYAVHTLTDEFPEVI 237
Query: 65 SIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
I+ + + N S SK L G V ++ + G
Sbjct: 238 DIVGLGEAAGNPN-------RFWAFTSTSKIT-LAGAGVSFFLTSAENRKWYTGHAGIRG 289
Query: 123 LVSSQ-TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-----AGISCLKSNA 176
+ ++ Q + D + + + ++ L + K++ L+
Sbjct: 290 IGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG 349
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG----WFRVCFANM 232
G F +D+ +S E E I + S + R+ +
Sbjct: 350 GYFISLDVVPGTASRVAELAKE--AGIAL------TGAGSSYPLRQDPENKNLRLAPSLP 401
Query: 233 SEDTLKLSMQRL 244
+ L+++M +
Sbjct: 402 PVEELEVAMDGV 413
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-16
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 25/243 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+V V++ +P+NP G T+S EL V + + LI+DE YS ++P S++E
Sbjct: 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPP-PSLLEAC 212
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQT 128
E + V +++SLSK PG R G I + ++ ++ ++
Sbjct: 213 MLAGNEAFKN---VLVIHSLSKRSSAPGLRSGFIAGDSR-LLEKYKAFRAYLGYTSANAI 268
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
Q A D + + KL K + L + ++ +
Sbjct: 269 QKASEAAWLD----DRHAEFFRNIYANN-LKL---ARKIFKNTLIYPYSFYVYLPV---- 316
Query: 189 SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLKAF 247
+ K + + + P G V A L+ ++ ++ +
Sbjct: 317 -----QNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETY 371
Query: 248 VDS 250
++
Sbjct: 372 REN 374
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-16
Identities = 39/245 (15%), Positives = 90/245 (36%), Gaps = 24/245 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K V V +P+NP G+ + + + + + + SDE YS F + ++
Sbjct: 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA 227
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQT 128
++ + SLSK +PG R G + + + ++ ++ +S
Sbjct: 228 AQLGRSRQ----KLLMFTSLSKRSNVPGLRSGFVAGDAE-LLKNFLLYRTYHGSAMSIPV 282
Query: 129 QYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL 188
Q A D + ++ +N++ +++ +++ L++ +A + W+ +
Sbjct: 283 QRASIAAWDD----EQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPDGD 337
Query: 189 SSNTFEAEMELWKKIVYDVKLNISPGS----SCHCTEPGWFRVCFA-NMSEDTLKLSMQR 243
LW+K ++ + PG PG V A T + +
Sbjct: 338 DL---AFARNLWQK--AAIQ--VLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAED 390
Query: 244 LKAFV 248
+ +
Sbjct: 391 IVSLY 395
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 5e-16
Identities = 32/254 (12%), Positives = 78/254 (30%), Gaps = 29/254 (11%)
Query: 7 KRHLKVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEK-NIHLISDEIYSGTVFSSPGFV 64
VKG+ V SNP G T+S + L + + +D+ Y
Sbjct: 168 GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRA 227
Query: 65 SIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
+ + + +R S SK G +G + S++D + + + +
Sbjct: 228 EPVNFVVL--ARDAGYPDRA--FVFASTSKIT-FAGAGLGFVASSEDNIRWLSKYLGAQS 282
Query: 123 LVSSQ-TQYLLSALLSDKKFA-QNYISENKKRLKQRHRKLVSGLEKA------GISCLKS 174
+ ++ Q L++ + + ++ + + R + L +
Sbjct: 283 IGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLP 342
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW----FRVCFA 230
G F +D ++ + + +P + + R+
Sbjct: 343 KGGYFISLDTAEPVADRVVKLAEA--AGVSL------TPAGATYPAGQDPHNRNLRLAPT 394
Query: 231 NMSEDTLKLSMQRL 244
+ ++ +MQ +
Sbjct: 395 RPPVEEVRTAMQVV 408
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 7e-16
Identities = 41/257 (15%), Positives = 93/257 (36%), Gaps = 40/257 (15%)
Query: 5 AQKRHLKVKGVLVTNPS--NPLGTTMS---RNELNLLVNFITEKNIHLISDEIYSGTVFS 59
+ K L T P+ NP G +++ + E+ + + +I D+ Y F+
Sbjct: 184 KNPQKNTPK-FLYTVPNGNNPTGNSLTSERKKEI---YELARKYDFLIIEDDPYYFLQFN 239
Query: 60 SPGFVSIMEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTV--VAAA 115
+ + + D RV + S SK + G R+G + + V
Sbjct: 240 KFRVPTFLSMDVD---------GRV--IRADSFSKIIS-SGLRIGFLTGPKPLIERVILH 287
Query: 116 TKMSSFGLVSSQTQYLLSALLSDKKFA--QNYISENKKRLKQRHRKLVSGLEK---AGIS 170
++S+ S+ Q ++S LL + ++ + +++ +K
Sbjct: 288 IQVSTLH-PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAE 346
Query: 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG---WFRV 227
AG+F W+ ++ + E + ++ PG++ + + R
Sbjct: 347 WHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLM------LPGNAFYVDSSAPSPYLRA 400
Query: 228 CFANMSEDTLKLSMQRL 244
F++ S + + ++ Q L
Sbjct: 401 SFSSASPEQMDVAFQVL 417
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 41/250 (16%), Positives = 79/250 (31%), Gaps = 32/250 (12%)
Query: 11 KVKGV-LVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFS--SPGFVSI 66
+VKG+ V NP G T S L T + ++ D Y+ S P ++
Sbjct: 178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNV 237
Query: 67 MEILKDRNCENTEVWNRVHIVY--SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV 124
+E + N + S SK G V S+ + + A+ + G+
Sbjct: 238 IEFAQAAGNPN-------RFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVRGIG 289
Query: 125 SSQ-TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-----AGISCLKSNAGL 178
++ Q + D + ++ ++ L + +++ L+ G
Sbjct: 290 PNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGY 349
Query: 179 FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG----WFRVCFANMSE 234
F VD+ +S E E I + S R+ +
Sbjct: 350 FISVDVVPGTASRVVELAKE--AGIAL------TGAGSSFPLHNDPNNENIRLAPSLPPV 401
Query: 235 DTLKLSMQRL 244
L+++M
Sbjct: 402 AELEVAMDGF 411
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 7e-13
Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 43/257 (16%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
V+ ++ NP NP+G S E+ + + + LISDEI+ V + +
Sbjct: 160 SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTV- 218
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV---VAAATK------MSSF 121
+ + N V + S SK L + + + +
Sbjct: 219 ------DWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLL 272
Query: 122 GLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKS 174
+ ++ Y L L + +N ++ L K + L S
Sbjct: 273 AIPAAIAAYEEGHDWLRELKQ-------VLRDNFAYAREF-------LAKEVPEVKVLDS 318
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234
NA WVD+ L + + K + L IS G+ + R+ A +
Sbjct: 319 NASYLAWVDISALGMNAE-----DFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPK 372
Query: 235 DTLKLSMQRLKAFVDSI 251
+ + MQRLK V ++
Sbjct: 373 ELVIDGMQRLKQGVLNL 389
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 9e-13
Identities = 43/247 (17%), Positives = 97/247 (39%), Gaps = 35/247 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
V V++ NP+NP G +++ + ++ EK +I DE + F+ S + +
Sbjct: 144 DVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGEI 201
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVG-AIYSNDDTVVAAATKMSSFGL---VSS 126
K+ + + I+ +++K +PG R G I +N + A K+ + ++
Sbjct: 202 KNY--------SCLFIIRAMTKFFAMPGIRFGYGITNNKEI----AAKIKAKQNPWNINC 249
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI--SCLKSNAGLFCWVDM 184
+ L D + + + K K+R R + L K G +A F +
Sbjct: 250 FAEMAAINCLKDTNYIEESLLWIK---KERKR-FIEELNKIGFIKRVFSPHAN-FVLCRL 304
Query: 185 RHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244
++ +++ ++ + IV I + + + R + + K ++ L
Sbjct: 305 ENISGEKLYDSLLK--EDIV------IRRCCNFIGLDDSFVRFAIKDE-KKNTKF-LRAL 354
Query: 245 KAFVDSI 251
K +++
Sbjct: 355 KGVENNL 361
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 43/255 (16%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
VK ++ NP NP+G +++EL L + + N+ +ISDEI+S + + + I
Sbjct: 164 DVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI- 222
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT----VVAAATKM-----SSF 121
+ E + +K + G + + D+ + A T++ + F
Sbjct: 223 ------SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCF 276
Query: 122 GLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKS 174
LV+++ Y L + L Y+ N + + + + K
Sbjct: 277 SLVATEASYNNGESWLESFLE-------YLESNIDFAIKY-------INENMPKLKVRKP 322
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234
WVD L S+ EL +V K+ ++ G+S G+ R+ A
Sbjct: 323 EGTYLLWVDFSALGLSDE-----ELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPR 376
Query: 235 DTLKLSMQRLKAFVD 249
L+ ++ R+K ++
Sbjct: 377 SMLEEALIRIKNAIN 391
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 47/258 (18%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K +L+ +P NP G + +EL ++ + + +ISDEI+ V+ + +
Sbjct: 162 ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA 221
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV----------VAAATKMSS 120
+ ++ S SK +P + + + S
Sbjct: 222 RG----------DWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSV 271
Query: 121 FGLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLK 173
L + Y L AL Y+ +N + + + A ++
Sbjct: 272 LALTAHIAAYQQGAPWLDALRI-------YLKDNLTYIADK-------MNAAFPELNWQI 317
Query: 174 SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMS 233
+ W+D+R L + L K ++ K+ I PG + G+ R+
Sbjct: 318 PQSTYLAWLDLRPLNIDDN-----ALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CP 371
Query: 234 EDTLKLSMQRLKAFVDSI 251
L+ + L + ++
Sbjct: 372 RSKLEKGVAGLINAIRAV 389
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 43/252 (17%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
VK L+ NP NP G R L + + + ++ L+SDEI+ VS +
Sbjct: 164 DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV- 222
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT----VVAAATKM-----SSF 121
+ + + ++ S +K + G + + T SS
Sbjct: 223 ------SPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSL 276
Query: 122 GLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKS 174
G ++++T Y L AL + + EN + + + + +K
Sbjct: 277 GYIATETAYRYGKPWLVALKA-------VLEENIQFAVEY-------FAQEAPRLKVMKP 322
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234
W+D ++ L+ + K+ ++ GS R+ A +
Sbjct: 323 QGTYLIWLDFSDYGLTDD-----ALFTLLHDQAKVILNRGSDYGSEGELHARLNIA-APK 376
Query: 235 DTLKLSMQRLKA 246
++ +R+
Sbjct: 377 SLVEEICKRIVC 388
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 4e-12
Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 46/266 (17%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ + + +L+ NP NPLG + LN L + + ++ DEI++ VF G
Sbjct: 142 DVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVF--DG 199
Query: 63 -FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--- 118
+ + + + + SK + G + I ++ + ++
Sbjct: 200 QHTVAAGV-------SDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPV 252
Query: 119 -----SSFGLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167
S+ GL++++ Y L+ ++ Y+ N L + K
Sbjct: 253 IKDGASTLGLIAAEAAYRYGTDFLNQEVA-------YLKNNHDFLLHE-------IPKRI 298
Query: 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226
G A W+D R + + K+ ++ G+ G+ R
Sbjct: 299 PGAKITPMQATYLMWIDFRDTTIEG------SPSEFFIEKAKVAMNDGAWFGEDGTGFCR 352
Query: 227 VCFANMSEDTLKLSMQRLKAFVDSIT 252
+ FA S + L+ ++ R+ V T
Sbjct: 353 LNFA-TSREVLEEAIDRMAKAVSHHT 377
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 36/250 (14%), Positives = 89/250 (35%), Gaps = 40/250 (16%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
VK L+ +P NP G ++L + + + L+SDEI+ S+ +
Sbjct: 194 NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTL- 252
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV---VAAATK------MSSF 121
+ + I+ S +K + G + ++++ + +
Sbjct: 253 ------DASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTV 306
Query: 122 GLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
G++++Q + L L + I N K + + I ++
Sbjct: 307 GMIATQAAFQYGKPWLEELKT-------VIEGNIKLVIKELEAK------TKIKVMEPEG 353
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236
W+D + +L +K+ + K+ ++ G+ + R+ A ++T
Sbjct: 354 TYLVWLDFSAYAIAQP-----QLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNT 407
Query: 237 LKLSMQRLKA 246
++ ++ R+ +
Sbjct: 408 VQEALSRIIS 417
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 7e-12
Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 43/257 (16%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K +L +P NP+G ++EL + + + + ++ L SDEI+ + I
Sbjct: 164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI- 222
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV---VAAATK------MSSF 121
+ ++ ++ + SK + G + I + + + ++
Sbjct: 223 ------DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTL 276
Query: 122 GLVSSQTQYL-----LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--GISCLKS 174
G + + Y L + I +N++ +K E I
Sbjct: 277 GYKACEICYKECGKWLDGCIK-------VIDKNQRIVKDF-------FEVNHPEIKAPLI 322
Query: 175 NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234
W+D R L + + + +++ ++ G G+ R+ A
Sbjct: 323 EGTYLQWIDFRALKMDHK-----AMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APS 376
Query: 235 DTLKLSMQRLKAFVDSI 251
++ S++RL + +
Sbjct: 377 SVIQESLERLNKALKDL 393
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 26/172 (15%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + + P+NP G R L + + NI+LI DE + + P + L
Sbjct: 146 DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI---PHETGFIPAL 202
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL---VSSQ 127
KD + ++ SL+K +PG R+G + ++DD +A +M + V++
Sbjct: 203 KDN--------PHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMA---RMRRQQMPWSVNAL 251
Query: 128 TQYLLSALLSDKKFAQ---NYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
L D + Q +++ E R Q +L ++ A
Sbjct: 252 AALAGEVALQDSAWQQATWHWLREEGARFYQALCQL------PLLTVYPGRA 297
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 5e-11
Identities = 37/219 (16%), Positives = 85/219 (38%), Gaps = 27/219 (12%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ + NP+NP G + R E+ L+N + + D+ Y F++ + +I
Sbjct: 129 NMDFCWLCNPNNPDGRLLQRTEILRLLN--DHPDTTFVLDQSYVS--FTTEEVIRPADIK 184
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQY 130
+N + +VYS S G+PG R+G I +N D + A + + V++
Sbjct: 185 GRKN---------LVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWA-VNALAIE 234
Query: 131 LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLFCWVDMRHLLS 189
+L + ++ ++ ++ L + G+ S F + ++ +
Sbjct: 235 AAKFILIH----PAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTT-FFLLRLKKGTA 289
Query: 190 SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228
+ + +E + ++ D S+ + + R+
Sbjct: 290 AELKKYMLEEYNMLIRDA-------SNFRGLDESYVRIT 321
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-10
Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 19/188 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS--GTVFSSPGFVSIME 68
++K + + P+NPLG + +E + + ++ ++ D Y+ + S + E
Sbjct: 153 EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCE 211
Query: 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQ 127
++K+ +N V + + SK GL G R+G +N + +++A K+ + F VS+
Sbjct: 212 LIKEF--DN------VLYLGTFSKLYGLGGLRIGYGIANAN-IISAFYKLRAPFN-VSNL 261
Query: 128 TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHL 187
A + D +F + + N +++ +K I + S F
Sbjct: 262 ALKAAVAAMDDDEFTEKTLENNFSQMEL----YKEFAKKHNIKIIDSYTN-FITYFFDEK 316
Query: 188 LSSNTFEA 195
S++ E
Sbjct: 317 NSTDLSEK 324
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 18/174 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
K V + NP+NP G + ++ ++ + ++ ++ DE Y + +P +++
Sbjct: 155 KTTIVWICNPNNPTGNYIELADIQAFLDRV-PSDVLVVLDEAY--IEYVTPQPEKHEKLV 211
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQ 129
+ +N + I + SK GL RVG ++ + ++ + F +S Q
Sbjct: 212 RTY--KN------LIITRTFSKIYGLASARVGYGIADKE-IIRQLNIVRPPFN-TTSIGQ 261
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
L + D+ F + N +KQ + +N F +D
Sbjct: 262 KLAIEAIKDQAFIGECRTSNANGIKQYEAFA---KRFEKVKLYPANGN-FVLID 311
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 17/174 (9%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
V + NP+NP GT + + + N I DE Y+ V + P F SI ++
Sbjct: 141 GPSIVYLVNPNNPTGTITPADVIEPWIASKPA-NTMFIVDEAYAEFV-NDPRFRSISPMI 198
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQ 129
EN + ++ + SK + G RVG ++ V+A + + ++
Sbjct: 199 TQG-AEN------IILLKTFSKIHAMAGMRVGYAVAHPT-VIALMGRYVAGEK-INFSGV 249
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
A ++D F N + L+ LE + L S F +
Sbjct: 250 DAALASMNDSAFITYSKKSNDVSRQI----LLKALEDLKLPYLPSEGN-FVFHQ 298
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 25/195 (12%)
Query: 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP 61
++ + + V + NP+NP G R E+ ++ + + DE Y F
Sbjct: 129 LRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYE--FHGE 182
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SS 120
S ++ LK EN + ++ + SK L RVG + +++ + A ++
Sbjct: 183 ---SYVDFLKKY--EN------LAVIRTFSKAFSLAAQRVGYVVASEK-FIDAYNRVRLP 230
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
F VS +Q L ++ + ++R R + S L + G S F
Sbjct: 231 FN-VSYVSQMFAKVALDHREIFEERTKFIV---EERER-MKSALREMGYRITDSRGN-FV 284
Query: 181 WVDMRHLLSSNTFEA 195
+V M E
Sbjct: 285 FVFMEKEEKERLLEH 299
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 23/165 (13%)
Query: 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKD 72
K +T P+ PLG + + L+ DE Y+ F+ + +E+++
Sbjct: 151 KVFFLTTPNAPLGPSFPLEY---IDELARRCAGMLVLDETYAE--FAES---NALELVRR 202
Query: 73 RNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYL 131
EN V + +LSK L G R+G + + V+AA K+ + + Q
Sbjct: 203 H--EN------VVVTRTLSKSYSLAGMRIGLAIARPE-VIAALDKIRDHYN-LDRLAQAA 252
Query: 132 LSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA 176
A L D+ + + + R + L G + S
Sbjct: 253 CVAALRDQAYLSECCRRIR---ETREW-FTTELRSIGYDVIPSQG 293
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-07
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ V++ NPSNP G +S EL+ L ++ L+ DE Y +SS +
Sbjct: 135 RDDCVVLANPSNPTGQALSAGELDQLR----QRAGKLLIDETYVD--YSSFRARGL---- 184
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQ 129
EN + S SK GL G R+GA++ + ++AA + V +
Sbjct: 185 --AYGEN------ELVFRSFSKSYGLAGLRLGALFGPSE-LIAAMKRKQWFCN-VGTLDL 234
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMR 185
+ L A L + + + +I++ QR R + L G S A F V+
Sbjct: 235 HALEAALDNDRAREAHIAKTL---AQRRR-VADALRGLGYRVASSEAN-FVLVENA 285
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-06
Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 22/174 (12%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ V VT P+NP G S +++ I +I DE Y FS S +L
Sbjct: 164 QPDIVFVTTPNNPTGDVTSLDDV---ERIINVAPGIVIVDEAY--AEFSPSP--SATTLL 216
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQ 129
+ ++ + ++SK G R+G +N + A + + +S+ +Q
Sbjct: 217 EKYP-------TKLVVSRTMSKAFDFAGGRLGYFVANPA-FIDAVMLVRLPYH-LSALSQ 267
Query: 130 YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVD 183
L + + +R R + + LE+ G + + S + F +
Sbjct: 268 AAAIVALRHSADTLGTVEKLS---VERVR-VAARLEELGYAVVPSESN-FVFFG 316
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 6e-06
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
VK V V +P+NP G ++ + L+ K I +++DE Y F S+ L
Sbjct: 146 GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAI-VVADEAY--IEFCPQA--SLAGWL 200
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQY 130
+ + + I+ +LSK L G R G +N++ V+ K+ + +S+
Sbjct: 201 AE--------YPHLAILRTLSKAFALAGLRCGFTLANEE-VINLLMKVIAPYPLSTPVAD 251
Query: 131 LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169
+ + LS + + E ++ L++ L++
Sbjct: 252 IAAQALSPQGIVA--MRERVAQIIAEREYLIAALKEIPC 288
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 39/230 (16%)
Query: 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIH--LISDEIYSGTVFSSP 61
LA + V + P+NP G ++ +V ++ DE Y F+
Sbjct: 150 LAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAY--QPFAQE 207
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SS 120
S M L D N + ++ ++SK LGL G R+G + + + K+
Sbjct: 208 ---SWMSRLTDF--GN------LLVMRTVSK-LGLAGIRLGYVAGDPQ-WLEQLDKVRPP 254
Query: 121 FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSNAGLF 179
+ V+ T+ L ++ + +R R + G+ G++ S A F
Sbjct: 255 YN-VNVLTEATALFALEHVAVLDEQAAQLR---AERSR-VAEGMAAHGGVTVFPSAAN-F 308
Query: 180 CWVDMRHLLSSNTFEAEMELWKK--IVYDVKLNISPGSSCHCTEPGWFRV 227
+ ++ TF+ L + ++ +V S H RV
Sbjct: 309 LLARVPD--AAQTFDR---LLARKVLIKNV-------SKMHPLLANCLRV 346
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 85 HIVYSLSK---DLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKF 141
HI + L + FR ++ + + K+ + + +L+ L KF
Sbjct: 476 HIGHHLKNIEHPERMTLFR--MVFLDFRFLEQ---KIRHDSTAWNASGSILN-TLQQLKF 529
Query: 142 AQNYISENKKRLKQRHRKLVSGLEKAGISCLKS 174
+ YI +N + ++ ++ L K + + S
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 25/113 (22%)
Query: 86 IVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYL-------------- 131
+ YSLSK + G RVGA+ ++ +++ +
Sbjct: 256 VCYSLSKGFTMYGQRVGAM-----IGISDDEEIAD--EFFEVNKSTSRATWSNICRPAMR 308
Query: 132 -LSALLSDKKFAQNYISENK---KRLKQRHRKLVSGLEKAGISCLKSNAGLFC 180
++ +++D + Y +E + ++ R + G+ L G F
Sbjct: 309 TMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFI 361
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.98 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.98 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.98 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.98 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.98 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.98 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.98 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.98 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.98 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.97 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.97 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.97 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.97 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.97 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.97 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.97 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.97 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.97 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.94 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.97 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.97 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.97 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.97 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.97 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.96 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.96 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.96 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.96 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.96 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.96 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.96 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.96 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.96 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.95 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.94 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.94 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.94 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.93 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.92 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.92 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.92 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.92 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.91 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.91 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.91 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.91 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.91 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.9 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.9 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.9 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.9 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.9 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.9 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.9 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.9 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.9 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.89 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.89 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.89 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.89 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.89 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.89 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.89 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.88 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.88 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.88 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.88 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.88 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.88 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.88 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.88 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.88 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.87 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.87 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.87 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.87 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.87 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.87 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.87 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.87 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.87 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.87 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.87 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.87 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.86 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.86 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.86 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.86 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.86 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.86 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.86 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.86 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.85 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.85 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.85 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.85 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.85 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.85 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.84 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.84 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.84 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.84 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.84 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.84 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.84 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.84 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.83 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.83 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.83 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.83 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.83 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.83 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.83 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.83 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.83 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.82 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.82 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.81 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.81 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.81 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.81 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.81 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.81 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.81 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.81 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.81 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.81 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.8 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.8 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.8 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.8 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.8 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.79 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.79 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.79 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.78 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.78 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.77 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.77 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.77 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.76 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.74 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.74 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.73 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.72 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.72 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.72 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.56 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.71 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.7 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.7 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.69 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.68 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.68 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.68 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.67 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.67 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.67 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.66 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.66 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.64 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.64 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.64 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.63 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.62 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.61 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.61 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.59 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.58 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.57 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.57 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.56 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.54 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.53 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.52 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.51 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.51 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.5 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.5 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.48 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.48 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.45 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.39 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.39 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.37 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.31 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.28 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.27 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.26 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.12 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.07 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=269.87 Aligned_cols=240 Identities=82% Similarity=1.312 Sum_probs=205.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC----CCCceE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE----VWNRVH 85 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~i 85 (289)
.++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++.++..+..+ | ..++++
T Consensus 190 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~i 266 (435)
T 3piu_A 190 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC---DENSEVWQRVH 266 (435)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC----------CGGGGEE
T ss_pred CCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccc---ccccCCCCCEE
Confidence 478999999999999999999999999999999999999999999988887777777766542100 0 057889
Q ss_pred EEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 86 IVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 86 ~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+++||||.+|++|+|+||++++++.+.+.+.....++..+++.|.++..++....++++++++.++.++++++++.+.|+
T Consensus 267 ~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 346 (435)
T 3piu_A 267 VVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQ 346 (435)
T ss_dssp EEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987777777777766776889999999999998877677888999999999999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
+.|+++..+.+|+++|++++.........+..+++..+++++||.+.||..|++.+++++||+++..+++++++++++|+
T Consensus 347 ~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~ 426 (435)
T 3piu_A 347 KSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426 (435)
T ss_dssp TTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHH
T ss_pred hcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHH
Confidence 98999999999999999998754433333456788888878899999999998878899999997559999999999999
Q ss_pred HHHHHHH
Q 044773 246 AFVDSIT 252 (289)
Q Consensus 246 ~~l~~~~ 252 (289)
+++++..
T Consensus 427 ~~l~~~~ 433 (435)
T 3piu_A 427 AFVGEYY 433 (435)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987653
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=262.00 Aligned_cols=240 Identities=58% Similarity=1.038 Sum_probs=194.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..+..+... .....++++++.|
T Consensus 187 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~viv~~s 265 (428)
T 1iay_A 187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM-TYCNKDLVHIVYS 265 (428)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG-TTSCTTSEEEEEE
T ss_pred CceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc-ccCCCCcEEEEec
Confidence 478999999999999999999999999999999999999999999877766555566665421000 0001478899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
+||.+|++|+|+||++++++.+.+.+.....++.+|++.|.++..++++..++++++++.++.++++++++.+.|+++|+
T Consensus 266 ~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 345 (428)
T 1iay_A 266 LSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGI 345 (428)
T ss_dssp STTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999767676666665555568899999999999987754678899999999999999999999888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++.++++|+|+|++++.........+..++...|++++||.+.||..|+..+++++||+++..+++++++++++|+++++
T Consensus 346 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 346 KCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp CBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 88888788999999876432222223346788888677999999998876556899999985699999999999999875
Q ss_pred H
Q 044773 250 S 250 (289)
Q Consensus 250 ~ 250 (289)
+
T Consensus 426 ~ 426 (428)
T 1iay_A 426 V 426 (428)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=259.13 Aligned_cols=231 Identities=21% Similarity=0.313 Sum_probs=190.0
Q ss_pred hHHHhh----hCCCccEE-EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccc
Q 044773 2 YQLAQK----RHLKVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~----~~~~~~~i-~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 76 (289)
+++++. ..+++++| ++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++....++.++
T Consensus 203 L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~------- 275 (448)
T 3aow_A 203 LEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKAL------- 275 (448)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGG-------
T ss_pred HHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhc-------
Confidence 455554 32478997 578999999999999999999999999999999999999988876655666665
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+..+++++++||||.++ +|+|+||++++ +.+.+.+.... .....|++.|.++..+|+...+ .+++++.++.++
T Consensus 276 --~~~~~vi~~~S~SK~~~-~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~ 350 (448)
T 3aow_A 276 --DNEGRVIYLGTFSKILA-PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYK 350 (448)
T ss_dssp --CTTSCEEEEEESTTTTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHH
T ss_pred --CCCCCEEEEccchhhcc-ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHH
Confidence 34578999999999999 99999999996 44554444332 1234788999999999988755 788999999999
Q ss_pred HHHHHHHHHHHhc---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEE
Q 044773 155 QRHRKLVSGLEKA---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCF 229 (289)
Q Consensus 155 ~~~~~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~ 229 (289)
++++++.+.|++. |+++..|.+|+|+|++++...+ ..+++..++++ ||.+.||..|+.. .++++||++
T Consensus 351 ~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~------~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~ 423 (448)
T 3aow_A 351 PRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGID------SKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNF 423 (448)
T ss_dssp HHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCC------HHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCC------HHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEe
Confidence 9999999999885 7888889999999999975322 25688888755 9999999988753 468999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+..+++++++++++|++++++.
T Consensus 424 ~~~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 424 TYVDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp SSSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 8668999999999999998765
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=254.07 Aligned_cols=223 Identities=18% Similarity=0.295 Sum_probs=181.0
Q ss_pred CCccEEEE-eCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLV-TNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l-~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++ ++||||||.+++.+++++|+++|+++|++||+||+|+++.+++....++.++ +..+++++++
T Consensus 189 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~---------~~~~~~i~~~ 259 (425)
T 2r2n_A 189 NTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSM---------DVDGRVIRAD 259 (425)
T ss_dssp CCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGG---------CTTSCEEEEE
T ss_pred CCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCcccc---------CCCCCEEEEc
Confidence 36888866 6899999999999999999999999999999999999888877666666665 3457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD---KKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
||||+++ +|+|+||++++++ +.+.+.... ..+++|++.|.++..+++. +.+ .+++++.++.++++++++.+.
T Consensus 260 s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 336 (425)
T 2r2n_A 260 SFSKIIS-SGLRIGFLTGPKP-LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAA 336 (425)
T ss_dssp ESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcc-CccceEEEecCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999754 444443332 2245788999999999986 344 678899999999999999999
Q ss_pred HHhc--CC-ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC---CCCeEEEEEecCCHHHH
Q 044773 164 LEKA--GI-SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT---EPGWFRVCFANMSEDTL 237 (289)
Q Consensus 164 l~~~--g~-~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~~~~Ris~~~~~~e~l 237 (289)
|++. |+ .+..|.+|+|+|++++...+. .+++...+.++||.+.||..|+.. +.+++||+++..+++++
T Consensus 337 L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~------~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i 410 (425)
T 2r2n_A 337 ADKWLTGLAEWHVPAAGMFLWIKVKGINDV------KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQM 410 (425)
T ss_dssp HHHHCSSSEEECCCSBSSEEEEEETTCSCC------HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHH
T ss_pred HHHHCCCCeEEeCCCceEEEEEEeCCCCCH------HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHH
Confidence 9885 66 467789999999999864332 243344455889999999999753 35799999975599999
Q ss_pred HHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDS 250 (289)
Q Consensus 238 ~~~l~~l~~~l~~ 250 (289)
++++++|++++++
T Consensus 411 ~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 411 DVAFQVLAQLIKE 423 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=257.82 Aligned_cols=241 Identities=19% Similarity=0.258 Sum_probs=187.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++|+++|||||||.+++.+++++|+++|++++++||+||+|..+.+++. .+.++..+..+... ..+...++++++|
T Consensus 235 ~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~i~~~S 313 (498)
T 3ihj_A 235 DPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGP-EYSSNVELASFHS 313 (498)
T ss_dssp EEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCH-HHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcc-cccCceeEEEEec
Confidence 589999999999999999999999999999999999999999999888754 56777776542100 0001235789999
Q ss_pred Ccccc-CCCCceEEEEEe--cCHHHHHHHHhc-cccCCCChHHHHHHHHHhCC-----chH--HHHHHHHHHHHHHHHHH
Q 044773 90 LSKDL-GLPGFRVGAIYS--NDDTVVAAATKM-SSFGLVSSQTQYLLSALLSD-----KKF--AQNYISENKKRLKQRHR 158 (289)
Q Consensus 90 ~sK~~-g~~G~r~G~i~~--~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~-----~~~--~~~~~~~~~~~~~~~~~ 158 (289)
|||.+ |++|+|+||+++ .++.+.+.+... ....+++.+.|.++..++.. +.+ +.++.++.++.++++++
T Consensus 314 ~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 393 (498)
T 3ihj_A 314 TSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAK 393 (498)
T ss_dssp SSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999 889999999984 456666655443 33455778999999999975 222 13445678899999999
Q ss_pred HHHHHHHhc-CCceecCCceEEEEEecCccccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe
Q 044773 159 KLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA 230 (289)
Q Consensus 159 ~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~ 230 (289)
++.+.|+++ |+++.++++|+|+|+++..+... ....+...++..+++++||.+.||+.|+. .+++++|++++
T Consensus 394 ~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~ 473 (498)
T 3ihj_A 394 LTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL 473 (498)
T ss_dssp HHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC
T ss_pred HHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC
Confidence 999999998 89999999999999876532110 01112222367788889999999999985 55679999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Q 044773 231 NMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 231 ~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++++++++++|+++++++.+
T Consensus 474 -~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 474 -PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999988765
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=256.47 Aligned_cols=226 Identities=20% Similarity=0.236 Sum_probs=186.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. ..+++++++|
T Consensus 208 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s 279 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG--------ADEVAIETCS 279 (449)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT--------GGGTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC--------CCCcEEEEec
Confidence 57899999999999999999999999999999999999999999998777655556655521 3477899999
Q ss_pred CccccCCCCceEEEEEecCHHHH-------HHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVV-------AAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~-------~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
|||.+|++|+|+||++++++.+. ..... ...+...+++.|.++..++.... .+++++.++.++++++++
T Consensus 280 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 357 (449)
T 3qgu_A 280 FSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQIL 357 (449)
T ss_dssp CSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999765432 12222 22344578899999999988632 467889999999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|++.|+++..+++|+++|++++ ..+ ..+++..|++++||.+.||..|++.+++++||++.. ++++++++
T Consensus 358 ~~~L~~~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~ 429 (449)
T 3qgu_A 358 KTTFTEMGFSVYGGDDAPYIWVGFP-GKP------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEA 429 (449)
T ss_dssp HHHHHHTTCCEEESSSSSEEEEECT-TSC------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHCCCeeeCCCCeeEEEEECC-CCC------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHH
Confidence 9999999999999998999999987 222 256888888888999999999987778999999875 89999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSITT 253 (289)
Q Consensus 241 l~~l~~~l~~~~~ 253 (289)
+++|++++++...
T Consensus 430 l~~l~~~~~~~~~ 442 (449)
T 3qgu_A 430 VRRFKEAYGKRNA 442 (449)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHhcCc
Confidence 9999998876543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=256.23 Aligned_cols=239 Identities=20% Similarity=0.284 Sum_probs=187.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++|+++|||||||.+++.+++++|+++|+++++++|+||+|+.+.+++ ....++..+..+.+ ..+...++++++
T Consensus 236 ~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~--~~~~~~~~i~~~ 313 (500)
T 3tcm_A 236 INVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLG--YGEEDLPLVSYQ 313 (500)
T ss_dssp CEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTT--CSSSCCCEEEEE
T ss_pred CCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhc--cccCCeEEEEEe
Confidence 368999999999999999999999999999999999999999999988854 35567665544320 001224578999
Q ss_pred cCcccc-CCCCceEEEEEe---cCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCch--------HHHHHHHHHHHHHHH
Q 044773 89 SLSKDL-GLPGFRVGAIYS---NDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKK--------FAQNYISENKKRLKQ 155 (289)
Q Consensus 89 s~sK~~-g~~G~r~G~i~~---~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~~~~~~~~ 155 (289)
||||.| |++|+|+||+++ +++ +.+.+... ....+++.+.|.++..++.... + .++..+.++.+++
T Consensus 314 S~SK~~~g~~G~R~G~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~ 391 (500)
T 3tcm_A 314 SVSKGYYGECGKRGGYFEITGFSAP-VREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLAR 391 (500)
T ss_dssp ESSSTTTCCGGGCCEEEEEESCCTT-HHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHH
T ss_pred cCCccCCCCCccceEEEEEeCCCHH-HHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHH
Confidence 999999 899999999998 544 44444333 3345578899999999997532 3 5667888899999
Q ss_pred HHHHHHHHHHhc-CCceecCCceEEEEEecCcccc------CCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEE
Q 044773 156 RHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLS------SNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRV 227 (289)
Q Consensus 156 ~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ri 227 (289)
+++.+.+.|+++ |+++.++++|+|+|+++..+.. .....+...++..+++++||.+.||+.|+. .+.+++|+
T Consensus 392 ~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRi 471 (500)
T 3tcm_A 392 RAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRC 471 (500)
T ss_dssp HHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEE
T ss_pred HHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEE
Confidence 999999999998 9999999999999976542211 000112234566788889999999999985 56779999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++ ++++++++++++|+++++++.+
T Consensus 472 s~~-~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 472 TIL-PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp ESC-SCTTTHHHHHHHHHHHHHHHHH
T ss_pred EEC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999999999999988765
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=248.09 Aligned_cols=219 Identities=19% Similarity=0.409 Sum_probs=178.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|+.+.+++ ...++.++ +. +++++++|
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~---------~~-~~~i~~~s 231 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRV---------AP-EHTLTVNG 231 (385)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGT---------CT-TTEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHc---------CC-CCEEEEEe
Confidence 468999999999999999999999999999999999999999999887765 44555555 23 78999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+|++|+|+||+++++ .+.+.+..... ...++.+.|.++..+++......+++++.++.++++++++.+.|+++
T Consensus 232 ~SK~~~~~G~RiG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T 1b5p_A 232 AAKAFAMTGWRIGYACGPK-EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310 (385)
T ss_dssp STTTTTCGGGCCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCcccceEEEEeCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999954 45444443322 23477899999988987611114568889999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++.++++++++|++++.. . .+..++...|+ ++||.+.||..|+. ++++||+++ ++++++++++++|+++
T Consensus 311 g~~~~~~~~~~~~~~~~~~~-~----~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 311 GLKAVRPSGAFYVLMDTSPI-A----PDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARV 381 (385)
T ss_dssp TCCBCCCSBTTEEEEECTTT-C----SSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGG
T ss_pred CCeecCCCeeEEEEEecCCC-C----CCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 99988999999999988631 1 12356888887 78999999999975 679999999 5899999999999876
Q ss_pred HH
Q 044773 248 VD 249 (289)
Q Consensus 248 l~ 249 (289)
++
T Consensus 382 l~ 383 (385)
T 1b5p_A 382 LG 383 (385)
T ss_dssp C-
T ss_pred Hh
Confidence 54
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=248.33 Aligned_cols=227 Identities=22% Similarity=0.329 Sum_probs=185.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++.++.. ..+++++++|
T Consensus 171 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~i~~~s 242 (412)
T 2x5d_A 171 PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG--------AKDIAVEFFT 242 (412)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------GGGTEEEEEE
T ss_pred cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccC--------ccCcEEEEec
Confidence 47899999999999999999999999999999999999999999998776655556655521 2478899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++ +.+.+.+..... .++.+++.|.++..+++.. .+++++.++.++++++++.+.|+++
T Consensus 243 ~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (412)
T 2x5d_A 243 LSKSYNMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREA 318 (412)
T ss_dssp CC-CCSCTTSCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCcccceEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999995 455554443322 3457889999999998864 3557888999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..+.+|+++|++++..... .+..+++..|++++||.+.||..|+..+++++||+++. +++++++++++|+++
T Consensus 319 g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 319 GWMVENPKASMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAM 394 (412)
T ss_dssp TCCCCCCSBSSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CCEecCCCeeeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 88888888999999998643210 12356888887778999999999876567899999986 899999999999999
Q ss_pred HHHHH
Q 044773 248 VDSIT 252 (289)
Q Consensus 248 l~~~~ 252 (289)
+++..
T Consensus 395 l~~~~ 399 (412)
T 2x5d_A 395 FRADG 399 (412)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 87654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=251.50 Aligned_cols=221 Identities=18% Similarity=0.257 Sum_probs=182.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++..+.. ..+++++++
T Consensus 196 ~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~--------~~~~~i~~~ 266 (432)
T 3ei9_A 196 VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPG--------AEEVAMETA 266 (432)
T ss_dssp CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTT--------GGGTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCC--------CCCeEEEEe
Confidence 46789999999999999999999999999999999999999999998866543 345544421 347789999
Q ss_pred cCccccCCCCceEEEEEecCHH-------HHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDT-------VVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~-------~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
||||++|++|+|+||++++++. +.+.+... ..+..++++.|.++..++.+.. .+++++.++.+++++++
T Consensus 267 S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~ 344 (432)
T 3ei9_A 267 SFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYKENTNI 344 (432)
T ss_dssp ESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred cchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999997766 23444332 2234478899999888887532 46788999999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|+++|+++.++.+++|+|++++. . +..+++..+++++||.+.||..|++.+++++||+++. +++++++
T Consensus 345 l~~~L~~~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~~ 416 (432)
T 3ei9_A 345 IIDTFTSLGYDVYGGKNAPYVWVHFPN-Q------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENILE 416 (432)
T ss_dssp HHHHHHHTTCCEEECSSSSEEEEECTT-S------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHH
T ss_pred HHHHHHHCCceecCCCcceEEEEECCC-C------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHHH
Confidence 999999999998888888999999983 1 1246788888888999999999987778999999975 9999999
Q ss_pred HHHHHHHHH
Q 044773 240 SMQRLKAFV 248 (289)
Q Consensus 240 ~l~~l~~~l 248 (289)
++++|++-.
T Consensus 417 ~l~rl~~~~ 425 (432)
T 3ei9_A 417 ACRRFKQLY 425 (432)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997643
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=246.53 Aligned_cols=233 Identities=22% Similarity=0.264 Sum_probs=192.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++++. +++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+.+....++..+.. +..
T Consensus 152 l~~~l~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-------~~~ 223 (391)
T 3dzz_A 152 LEEKLAT-PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDW-------DAK 223 (391)
T ss_dssp HHHHHTS-TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCT-------TTG
T ss_pred HHHHHhc-cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCc-------ccc
Confidence 4555543 47999999999999999999999999999999999999999999998887766666666532 124
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc---cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM---SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
++++++.|+||.+|++|+|+||++++++.+.+.+... ...+..+++.+.++..++... .+++++.+++++++++
T Consensus 224 d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~ 300 (391)
T 3dzz_A 224 NWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFA 300 (391)
T ss_dssp GGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999767666665544 233457888888888888753 5668889999999999
Q ss_pred HHHHHHHhc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 159 KLVSGLEKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 159 ~l~~~l~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.|++. |+++..+.+++++|++++... .+..++...|++++||.+.||..|+..+++++||+++ +++++
T Consensus 301 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~ 374 (391)
T 3dzz_A 301 YAREFLAKEVPEVKVLDSNASYLAWVDISALG-----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKEL 374 (391)
T ss_dssp HHHHHHHHHCTTSEECCCCBSSEEEEECGGGC-----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC-SCHHH
T ss_pred HHHHHHHhhCCCcEEeccCceEEEEEehhhcC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CCHHH
Confidence 999999984 899999999999999987531 1225688888767899999999998777799999999 59999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDSI 251 (289)
Q Consensus 237 l~~~l~~l~~~l~~~ 251 (289)
+++++++|++++++.
T Consensus 375 i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 375 VIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988753
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=244.22 Aligned_cols=226 Identities=19% Similarity=0.403 Sum_probs=184.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++.++.. ..+++++++|
T Consensus 159 ~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s 230 (389)
T 1gd9_A 159 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--------MFERTITVNG 230 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--------CGGGEEEEEE
T ss_pred cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC--------CCCCEEEEec
Confidence 36899999999999999999999999999999999999999999988776554455555421 2468899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++ +.+.+.+..... .+..+++.|.++..+++.... .+++++.++.++++++++.+.|+++
T Consensus 231 ~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 308 (389)
T 1gd9_A 231 FSKTFAMTGWRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEM 308 (389)
T ss_dssp STTTTTCGGGCCEEEECC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhcCCcccceEEEEEC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999899999999996 455554443322 244788999999999987533 3478899999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..+++|+++|++++... .+..+++..|++++||.+.||..|+..+++++||+++. +++++++++++|+++
T Consensus 309 g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 309 GLPTVKPKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERV 382 (389)
T ss_dssp TCCCCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CCeecCCCeeeEEEEeccCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 988888889999999886411 12246788887688999999998876567899999986 899999999999998
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
+++.
T Consensus 383 ~~~~ 386 (389)
T 1gd9_A 383 LKER 386 (389)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8754
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=248.92 Aligned_cols=230 Identities=15% Similarity=0.205 Sum_probs=192.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.. +++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.+ |..
T Consensus 186 le~~i~~-~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-------~~~ 257 (421)
T 3l8a_A 186 LEKDIID-NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA-------SYK 257 (421)
T ss_dssp HHHHHHH-TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT-------TGG
T ss_pred HHHHhhc-cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc-------hhc
Confidence 4555553 47999999999999999999999999999999999999999999999888776667666643 245
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc---ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS---SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
++++++.|+||.+|++|+|+||++++++.+.+.+.... .++..|++.+.++.+++... ++++++.++.++++++
T Consensus 258 ~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 258 DFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIK 334 (421)
T ss_dssp GTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 78899999999999899999999997677766554432 34457889999988888743 6678899999999999
Q ss_pred HHHHHHHhc-CCceecCCceEEEEEecCcc-ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 159 KLVSGLEKA-GISCLKSNAGLFCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 159 ~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.|+++ ++.+..+.++++.|++++.. .+. .++...|++++||.+.||..|+..+++++||+++ .++++
T Consensus 335 ~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~------~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~ 407 (421)
T 3l8a_A 335 LVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQ------PQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNT 407 (421)
T ss_dssp HHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCT------THHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHH
T ss_pred HHHHHHHhCCCceEeCCCeeEEEEEeccccCCCH------HHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-CCHHH
Confidence 999999986 89999999999999998863 222 3578888778899999999998777899999999 49999
Q ss_pred HHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVD 249 (289)
Q Consensus 237 l~~~l~~l~~~l~ 249 (289)
+++++++|+++++
T Consensus 408 i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 408 VQEALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=246.47 Aligned_cols=224 Identities=20% Similarity=0.334 Sum_probs=183.8
Q ss_pred CccEE-EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i-~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++| ++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+ +..+++++++|
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~---------~~~~~~i~~~s 257 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI---------GGPERVVLLNT 257 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH---------HCTTTEEEEEE
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHh---------CCCCCEEEEec
Confidence 68888 578999999999999999999999999999999999999987766655666665 23467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+| +|+|+||++++ +.+.+.+.... ..+..|++.|.++..+++...+ .+++++.++.++++++++.+.|++.
T Consensus 258 ~sK~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 334 (425)
T 1vp4_A 258 FSKVLA-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEY 334 (425)
T ss_dssp STTTTC-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 99999999996 44554444322 1234688999999999987544 6778899999999999999999886
Q ss_pred -----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEEecCCHHHHHHH
Q 044773 168 -----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 168 -----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~ 240 (289)
|+++..+.+|+++|++++...+. .+++..|+++ ||.+.||..|+.. .++++||+++..++++++++
T Consensus 335 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~ 407 (425)
T 1vp4_A 335 FSDIPGVKWVKSEGGLFIWLTLPEGFDT------WEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEG 407 (425)
T ss_dssp STTSTTCEECCCSBSSEEEEECCTTCCT------TTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHH
T ss_pred CCCCCceEEecCCccEEEEEEcCCCCCH------HHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHH
Confidence 68888888899999999753332 3477777756 9999999988653 46899999986589999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSITT 253 (289)
Q Consensus 241 l~~l~~~l~~~~~ 253 (289)
+++|++++++..+
T Consensus 408 l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 408 IKRLREVVLEYGK 420 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987665
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=251.99 Aligned_cols=227 Identities=20% Similarity=0.316 Sum_probs=181.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ...++..+.+ +..+++++++|
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~-------~~~~~~i~i~S 271 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSP-------EIGQLTLTVGS 271 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCH-------HHHTTEEEEEE
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCC-------CCCCcEEEEec
Confidence 578999999999999999999999999999999999999999999987766 3344444411 13478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++++.+.+.+.... ..++.+++.|.++..+|+.... ++++++.++.++++++++.+.|+++
T Consensus 272 ~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 272 AGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp HHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999993344444444321 2344788999999989886543 6678899999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCC---------hhhHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeEEEEEecCC
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNT---------FEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCFANMS 233 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~---------~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~~Ris~~~~~ 233 (289)
|+++..+++|+|+|++++....... ..+..+++..|++++||.+.||..|+.. +++++||+++. +
T Consensus 351 g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~-~ 429 (447)
T 3b46_A 351 GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-D 429 (447)
T ss_dssp TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-C
T ss_pred CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-C
Confidence 9998889999999999875210000 0234568888887889999999988753 26899999985 8
Q ss_pred HHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKA 246 (289)
Q Consensus 234 ~e~l~~~l~~l~~ 246 (289)
++++++++++|++
T Consensus 430 ~e~l~~~~~~l~~ 442 (447)
T 3b46_A 430 DAYLENAVERLKL 442 (447)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999976
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=245.15 Aligned_cols=234 Identities=15% Similarity=0.205 Sum_probs=187.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.. +++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.++ ..
T Consensus 156 l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~ 227 (399)
T 1c7n_A 156 LEKLSKD-KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ-------LA 227 (399)
T ss_dssp HHHHHTC-TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HH
T ss_pred HHHHhcc-CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcc-------cc
Confidence 3445543 478999999999999999999999999999999999999999999987766555555554210 14
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc---cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS---FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
++++++.|+||.+|++|+|+||++++++.+.+.+..... +..++++.+.++.+++... .+++++.++.++++++
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~ 304 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQR 304 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHH
Confidence 678999999999999999999999976655555544322 2246888999888888753 4568888999999999
Q ss_pred HHHHHHHh-c-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 159 KLVSGLEK-A-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 159 ~l~~~l~~-~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.|++ + ++++.++.+++++|++++... .+..++...|++++||.+.||..|+...++++||+++. ++++
T Consensus 305 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~ 378 (399)
T 1c7n_A 305 IVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSV 378 (399)
T ss_dssp HHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred HHHHHHHhhCCCCeEecCCceEEEEEEcccCC-----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHH
Confidence 99999998 5 888888999999999987530 11246788887678999999998876567899999985 6899
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDSIT 252 (289)
Q Consensus 237 l~~~l~~l~~~l~~~~ 252 (289)
+++++++|++++++..
T Consensus 379 l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 379 IQESLERLNKALKDLK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=245.25 Aligned_cols=228 Identities=18% Similarity=0.245 Sum_probs=189.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.. +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ....++..+. .
T Consensus 143 l~~~l~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~---------~ 211 (377)
T 3fdb_A 143 VEKGFQA--GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDT---------A 211 (377)
T ss_dssp HHHHHHT--TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHH---------H
T ss_pred HHHHhcc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHcc---------C
Confidence 4555554 47899999999999999999999999999999999999999999987776 4444544431 2
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+++++++|+||.+|++|+|+||++++++.+.+.+..... .+..+++.+.++..++... .+++++.++.++++++
T Consensus 212 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~ 288 (377)
T 3fdb_A 212 ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHD 288 (377)
T ss_dssp HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999877777766655433 2457889999988888754 5668889999999999
Q ss_pred HHHHHHHhc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 159 KLVSGLEKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 159 ~l~~~l~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
++.+.|++. ++++..+++++++|++++..... .+++..+++++||.+.||..|+...++++||+++. ++++
T Consensus 289 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~ 361 (377)
T 3fdb_A 289 FLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIE------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREV 361 (377)
T ss_dssp HHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCC------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred HHHHHHHhhCCCceEecCCeeEEEEEECcccCCC------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHH
Confidence 999999985 89999999999999998863211 13777788788999999999987678999999995 8999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDS 250 (289)
Q Consensus 237 l~~~l~~l~~~l~~ 250 (289)
+++++++|++++++
T Consensus 362 i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 362 LEEAIDRMAKAVSH 375 (377)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=249.48 Aligned_cols=230 Identities=20% Similarity=0.357 Sum_probs=186.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. ..+++++++|
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 244 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG--------MWERTLTIGS 244 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGEEEEEE
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc--------ccCcEEEEec
Confidence 47899999999999999999999999999999999999999999998887766666666532 3478899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD-----KKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+||.+|++|+|+||++++++ +.+.+.... ..+.++++.|.++..++.. ..+ .+++++.++.++++++++.+
T Consensus 245 ~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 322 (422)
T 3fvs_A 245 AGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRDHMIR 322 (422)
T ss_dssp HHHHHTCGGGCCEEEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCccceEEEEEeCHH-HHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999654 444443332 2344788999999888874 222 56688899999999999999
Q ss_pred HHHhcCCceecCCceEEEEEecCccccC-C------ChhhHHHHHHHHHHhcCeEEeCCCCCCC-----CCCCeEEEEEe
Q 044773 163 GLEKAGISCLKSNAGLFCWVDMRHLLSS-N------TFEAEMELWKKIVYDVKLNISPGSSCHC-----TEPGWFRVCFA 230 (289)
Q Consensus 163 ~l~~~g~~~~~~~~g~~~~i~~~~~~~~-~------~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~~~Ris~~ 230 (289)
.|++.|+++..+++|+++|++++..... . ......+++..+++++||.+.||+.|+. .+++++||+++
T Consensus 323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 402 (422)
T 3fvs_A 323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV 402 (422)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC
T ss_pred HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec
Confidence 9999999989999999999998753110 0 0000346888888888999999999864 35789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 044773 231 NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 231 ~~~~e~l~~~l~~l~~~l~~ 250 (289)
. +++++++++++|++++++
T Consensus 403 ~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 403 K-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp C-CHHHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHHHhh
Confidence 6 999999999999998753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=243.12 Aligned_cols=221 Identities=19% Similarity=0.273 Sum_probs=184.4
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. |..++++++.|+|
T Consensus 165 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-------~~~~~~i~~~s~s 237 (391)
T 4dq6_A 165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISK-------EFEKNTITCMAPT 237 (391)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCH-------HHHHTEEEEECSH
T ss_pred CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCc-------cccCcEEEEEech
Confidence 899999999999999999999999999999999999999999998887766666665532 1247889999999
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhcc---ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMS---SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|.+|++|+|+||++++++.+.+.+.... ..+..+++.+.++..++... .+++++.++.++++++++.+.|++.
T Consensus 238 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~ 314 (391)
T 4dq6_A 238 KTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENM 314 (391)
T ss_dssp HHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998756665554432 23347788888888888753 5668888999999999999999884
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++..+.+++++|++++... .+..++...|++++||.+.||..|+..+++++||+++ .+++++++++++|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 315 PKLKVRKPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKN 388 (391)
T ss_dssp TTSEECCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHHH
T ss_pred CCCEecCCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHHH
Confidence 899999999999999987521 1225688888866699999999998877899999999 589999999999998
Q ss_pred HH
Q 044773 247 FV 248 (289)
Q Consensus 247 ~l 248 (289)
++
T Consensus 389 ~l 390 (391)
T 4dq6_A 389 AI 390 (391)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=249.27 Aligned_cols=221 Identities=20% Similarity=0.303 Sum_probs=180.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ...++.++.. ..+++++++|
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~--------~~~~~i~~~s 250 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASEN--------GKDVAIEIYS 250 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTT--------HHHHEEEEEE
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCC--------CCCCEEEEEe
Confidence 368999999999999999999999999999999999999999999887755 3344444421 2367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++ +.+.+.+..... .+..+++.|.++..+++.. .+++++.++.++++++++.+.|++.
T Consensus 251 ~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 326 (404)
T 2o1b_A 251 LSKGYNMSGFRVGFAVGN-KDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKA 326 (404)
T ss_dssp STTTTTCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhccCchhheEeEecC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999899999999995 445544443322 2457889999998888763 5668889999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..+++|+++|++++...+ ..+++..+++++||.+.||..|+...++++||+++. +++++++++++|+++
T Consensus 327 g~~~~~~~~g~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 327 DLPFVHAKGGIYVWLETPPGYD------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTEL 399 (404)
T ss_dssp TCCEECCCBSSEEEEECCTTCC------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGG
T ss_pred CCeecCCCcceEEEEeCCCCCC------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHH
Confidence 9998889999999999874322 246788888778999999998875557899999986 789999999999887
Q ss_pred HHH
Q 044773 248 VDS 250 (289)
Q Consensus 248 l~~ 250 (289)
+++
T Consensus 400 l~~ 402 (404)
T 2o1b_A 400 AYL 402 (404)
T ss_dssp GGG
T ss_pred HHh
Confidence 654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=243.68 Aligned_cols=231 Identities=18% Similarity=0.306 Sum_probs=187.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.. ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|+.+.+++....++..+.. +..
T Consensus 172 l~~~l~~--~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~-------~~~ 242 (407)
T 3nra_A 172 LEEAFKA--GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAA-------VDA 242 (407)
T ss_dssp HHHHHHT--TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTT-------SCG
T ss_pred HHHHHhh--CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCc-------ccC
Confidence 3455553 6899999999999999999999999999999999999999999998887766666555421 135
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++++++||||.+|++|+|+||++++ +.+.+.+..... ....+++.+.++..++... .+++++.++++++++++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~ 318 (407)
T 3nra_A 243 ENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDE 318 (407)
T ss_dssp GGEEEEECSSSTTCCGGGCCEEEEEC-HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCcccccCCCeeeEEEEEcC-HHHHHHHHHHHhhhccCCChHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH
Confidence 78999999999999999999999995 455554443322 2335678888888888753 34467778888999999
Q ss_pred HHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 160 LVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 160 l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
+.+.|+++ ++.+..+.+|+++|++++... .+..++...|++++||.+.||..|++..++++||+++. ++++++
T Consensus 319 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~ 392 (407)
T 3nra_A 319 LLHVLRGCEGVFARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAV 392 (407)
T ss_dssp HHHHHHTSTTCBCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHH
T ss_pred HHHHHhcCCCceeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHH
Confidence 99999988 888888999999999987521 12246788887778999999999987778999999985 999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSI 251 (289)
Q Consensus 239 ~~l~~l~~~l~~~ 251 (289)
+++++|++++++.
T Consensus 393 ~~~~~l~~~~~~~ 405 (407)
T 3nra_A 393 AAARRIVTLVERY 405 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=245.50 Aligned_cols=226 Identities=22% Similarity=0.346 Sum_probs=183.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. ..++++++.|
T Consensus 166 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 237 (410)
T 3e2y_A 166 SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPG--------MWERTITIGS 237 (410)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------CGGGEEEEEE
T ss_pred CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCC--------ccCeEEEEec
Confidence 47899999999999999999999999999999999999999999998887766666666532 4578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD-----KKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
|||.+|++|+|+||++++++ +.+.+.... ..+.++++.|.++..++++ ..+ .+++++.++.++++++++.+
T Consensus 238 ~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 315 (410)
T 3e2y_A 238 AGKTFSVTGWKLGWSIGPAH-LIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDRMVR 315 (410)
T ss_dssp HHHHSSCGGGCCEEEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCceEEEEEECHH-HHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999654 444444332 2344788999999888873 222 55678899999999999999
Q ss_pred HHHhcCCceecCCceEEEEEecCccccCC-----ChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeEEEEEecC
Q 044773 163 GLEKAGISCLKSNAGLFCWVDMRHLLSSN-----TFEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCFANM 232 (289)
Q Consensus 163 ~l~~~g~~~~~~~~g~~~~i~~~~~~~~~-----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~~Ris~~~~ 232 (289)
.|+++|+.+..+++|+++|+++....... ...+..+++..+++++||.+.||..|+.. +++++||+++.
T Consensus 316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~- 394 (410)
T 3e2y_A 316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK- 394 (410)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-
T ss_pred HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-
Confidence 99999999999999999999987632210 01123467888888889999999988753 35899999985
Q ss_pred CHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKA 246 (289)
Q Consensus 233 ~~e~l~~~l~~l~~ 246 (289)
+++++++++++|++
T Consensus 395 ~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 395 KDSTLDAAEEIFRA 408 (410)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=245.60 Aligned_cols=219 Identities=15% Similarity=0.219 Sum_probs=170.2
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC--ccChhhhhhccccccC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (289)
+++++...++++++++++| |||||.+++.+++++|+++|++++++||+||+|.++.+++.. ..++..+..
T Consensus 164 l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~------- 236 (405)
T 3k7y_A 164 FLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE------- 236 (405)
T ss_dssp HHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT-------
T ss_pred HHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh-------
Confidence 4556665556788888776 999999999999999999999999999999999998765321 123333322
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEe--cCHHHHHHH----Hhc--cccCCCChHHHHHHHHHhCCchH---HHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYS--NDDTVVAAA----TKM--SSFGLVSSQTQYLLSALLSDKKF---AQNYIS 147 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~--~~~~~~~~~----~~~--~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~ 147 (289)
..+++++++||||+||++|+|+||+++ +++.+.+.+ ... ..+.+.+.+.|.+++.++.+..+ ..++++
T Consensus 237 -~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~ 315 (405)
T 3k7y_A 237 -KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELS 315 (405)
T ss_dssp -TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 347899999999999999999999864 455443322 222 23344567999999999988532 155677
Q ss_pred HHHHHHHHHHHHHHHHHH----hcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLE----KAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~----~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
+.++.++++++.+.+.|+ ++| |++.+|++|||+|+.++. +++..| +++||.+.|+.
T Consensus 316 ~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~---- 379 (405)
T 3k7y_A 316 QLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG---- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS----
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC----
Confidence 788889999999999999 776 688899999999988763 134556 79999999852
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
|||++..++++++.++++|++++++
T Consensus 380 ------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 ------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred ------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 9999877899999999999998763
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=246.27 Aligned_cols=223 Identities=21% Similarity=0.264 Sum_probs=175.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+-. ..+++++++|
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~s 233 (400)
T 3asa_A 162 THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD--------ARFCAIEINS 233 (400)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT--------GGGTEEEEEE
T ss_pred cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC--------CCCceEEEec
Confidence 47899999999999999999999999999999999999999999987665543345544410 2367899999
Q ss_pred CccccCCCCceEEEEEecCHH-------HHHHHH--hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDT-------VVAAAT--KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~-------~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
|||.+|++|+|+||++++++. +..... ....++++|++.|.++..+++.. ++++.++.++++++++
T Consensus 234 ~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l 308 (400)
T 3asa_A 234 FSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLL 308 (400)
T ss_dssp CCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHH
T ss_pred chhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHH
Confidence 999999999999999997765 343332 22234457889999988888754 3567788899999999
Q ss_pred HHHHHhcCCceecCCceEEEEEe-cCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVD-MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
.+.|++.|+++.++.+|+++|++ ++...+. .+++..+++++||.+.||..|+..+++++||++. .+++++++
T Consensus 309 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~ 381 (400)
T 3asa_A 309 RKALLATGFEVFGGEHAPYLWVKPTQANISD------RDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILA 381 (400)
T ss_dssp HHHHHHTTCEEEECSSSSEEEEECCCTTCCT------TTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHH
T ss_pred HHHHHHCCCeeeCCCCceEEEEeccCCCCCH------HHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHH
Confidence 99999889988888888999999 7643322 2477778877899999999987655789999975 58999999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
++++|++++++..
T Consensus 382 ~l~~l~~~~~~~~ 394 (400)
T 3asa_A 382 ACERLQMAPALQS 394 (400)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=241.47 Aligned_cols=226 Identities=15% Similarity=0.266 Sum_probs=180.5
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++.. ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.+........ ....+
T Consensus 162 ~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 235 (396)
T 3jtx_A 162 SEEVWK--RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL----GRSRQ 235 (396)
T ss_dssp CHHHHH--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT----TCCCT
T ss_pred HHhhcc--CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc----ccccC
Confidence 444543 689999999999999999999999999999999999999999999877764444443322100 01257
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+++++.||||.++++|+|+||++++ +.+.+.+..... .+.+|++.|.++..++.. .+++++.++.++++++.+
T Consensus 236 ~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l 310 (396)
T 3jtx_A 236 KLLMFTSLSKRSNVPGLRSGFVAGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLYQEKFERV 310 (396)
T ss_dssp TEEEEEESTTTSSCGGGCCEEEEEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeccccccCCcccceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999995 455554443322 244788999999998886 345788899999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------CCCCeEEEEEecCCH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------TEPGWFRVCFANMSE 234 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~~Ris~~~~~~ 234 (289)
.+.|.+. +.+..+.+|+++|++++.. +..+++..|++++||.+.||..|+. ..++++||+++. ++
T Consensus 311 ~~~l~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~ 381 (396)
T 3jtx_A 311 IPILQQV-FDVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DV 381 (396)
T ss_dssp HHHHTTT-SCCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CH
T ss_pred HHHHHhc-CCccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CH
Confidence 9999886 5677888999999998751 2246888888888999999999885 346899999986 99
Q ss_pred HHHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAFV 248 (289)
Q Consensus 235 e~l~~~l~~l~~~l 248 (289)
+++++++++|++++
T Consensus 382 ~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 382 ATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.3e-32 Score=246.48 Aligned_cols=229 Identities=22% Similarity=0.353 Sum_probs=183.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+. +..++++++.|
T Consensus 181 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~s 252 (429)
T 1yiz_A 181 EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLP--------GMWERTITIGS 252 (429)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGST--------TTGGGEEEEEE
T ss_pred cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhcc--------CCcCceEEEec
Confidence 4789999999999999999999999999999999999999999999887765555554441 13478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD-----KKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+||.+|++|+|+||+++++ .+.+.+.... ..+..+++.|.++..+++. ..+ .+++++.++.++++++++.+
T Consensus 253 ~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 330 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYGPE-ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMAS 330 (429)
T ss_dssp HHHHHTCGGGCCEEEESCH-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCCCcceEEEEeCH-HHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 9999998999999999964 4555444332 2344788999998888876 433 56688899999999999999
Q ss_pred HHHhcCCceecCCceEEEEEecCcccc------CCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeEEEEEec
Q 044773 163 GLEKAGISCLKSNAGLFCWVDMRHLLS------SNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCFAN 231 (289)
Q Consensus 163 ~l~~~g~~~~~~~~g~~~~i~~~~~~~------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~~Ris~~~ 231 (289)
.|.+.|+++..+.+|+++|++++.... .....+..+++..|++++||.+.||..|+.. .++++||+++.
T Consensus 331 ~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~ 410 (429)
T 1yiz_A 331 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK 410 (429)
T ss_dssp HHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS
T ss_pred HHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC
Confidence 999889998888889999999875310 0000233567888887889999999888642 26799999995
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~ 249 (289)
+++++++++++|+++++
T Consensus 411 -~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 411 -KDENLQKAAEILRKWKG 427 (429)
T ss_dssp -CHHHHHHHHHHHHHHSC
T ss_pred -CHHHHHHHHHHHHHhcc
Confidence 89999999999988754
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-31 Score=238.99 Aligned_cols=229 Identities=16% Similarity=0.231 Sum_probs=183.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++... ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..+.+ ..
T Consensus 154 l~~~l~~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~ 224 (390)
T 1d2f_A 154 LEAVLAKP-ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR--------GD 224 (390)
T ss_dssp HHHHHTST-TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC--------SS
T ss_pred HHHHhccC-CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch--------hh
Confidence 34555432 6899999999999999999999999999999999999999999998777665556555521 11
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc----ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS----SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
... +.|+||.+|++|+|+||++++++.+.+.+.... .++..+++.+.++..+++.. .+++++.++.+++++
T Consensus 225 -~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~ 299 (390)
T 1d2f_A 225 -WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNL 299 (390)
T ss_dssp -EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHH
T ss_pred -Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 123 999999999999999999997666655554432 34457888888888888742 556888899999999
Q ss_pred HHHHHHHHh-c-CCceecCCceEEEEEecCcc-ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCH
Q 044773 158 RKLVSGLEK-A-GISCLKSNAGLFCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE 234 (289)
Q Consensus 158 ~~l~~~l~~-~-g~~~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~ 234 (289)
+.+.+.|++ + |+++.++.+++++|++++.. .+ ..++...|++++||.+.||..|+...++++||+++. ++
T Consensus 300 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~ 372 (390)
T 1d2f_A 300 TYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PR 372 (390)
T ss_dssp HHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCC------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CH
T ss_pred HHHHHHHHhhCCCCEEecCCccEEEEEEccccCCC------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CH
Confidence 999999998 5 88888899999999998753 22 246788887678999999999875556899999986 78
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 235 e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++|++++++.
T Consensus 373 ~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 373 SKLEKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988754
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=242.97 Aligned_cols=228 Identities=20% Similarity=0.333 Sum_probs=186.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. ....+++++|
T Consensus 190 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~---------~~~~vi~~~S 260 (427)
T 3dyd_A 190 EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS---------TDVPILSCGG 260 (427)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC---------SSCCEEEEEE
T ss_pred cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC---------CCCcEEEEee
Confidence 3689999999999999999999999999999999999999999999888776666666552 3356888999
Q ss_pred CccccCCCCceEEEEEecC------HHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSND------DTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~------~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
|||.|+++|+|+||+++++ +.+.+.+.... ..+.++++.|.++..+++... .+++++.++.++++++.+.+
T Consensus 261 ~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~ 338 (427)
T 3dyd_A 261 LAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYG 338 (427)
T ss_dssp STTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 34554444332 245588899999999998432 55678888999999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|+++ |+.+..|++|+|+|+.++...-. ...+..+++..|++++||.+.||..|+. ++++||+++ ++++++++++
T Consensus 339 ~L~~~~g~~~~~p~~g~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l 414 (427)
T 3dyd_A 339 ALAAIPGLRPVRPSGAMYLMVGIEMEHFP-EFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEAC 414 (427)
T ss_dssp HHHHSTTEEEECCSBTTEEEEEECGGGCT-TCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHHH
T ss_pred HHhcCCCceecCCCeeEEEEEecCHhhcC-CCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHHH
Confidence 99998 88888899999999988732110 0022356888888788999999998874 689999998 5999999999
Q ss_pred HHHHHHHHHHH
Q 044773 242 QRLKAFVDSIT 252 (289)
Q Consensus 242 ~~l~~~l~~~~ 252 (289)
++|++++++..
T Consensus 415 ~~l~~~l~~~~ 425 (427)
T 3dyd_A 415 SRIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999987653
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=249.96 Aligned_cols=228 Identities=20% Similarity=0.324 Sum_probs=174.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHH--HHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFI--TEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~--~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|+++|||||||.+++.+++++|+++| ++++++||+||+|.++.++ +.++.+. ..++++++
T Consensus 244 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~----------~~~~~i~~ 310 (546)
T 2zy4_A 244 PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAI----------CPENTLLV 310 (546)
T ss_dssp TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHH----------CGGGEEEE
T ss_pred CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHh----------CCCCEEEE
Confidence 5789999999999999999999999999999 7899999999999987542 3455554 23689999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHH-Hh------------c-------------------------cccCCCChHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAA-TK------------M-------------------------SSFGLVSSQTQ 129 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~-~~------------~-------------------------~~~~~~~~~~q 129 (289)
+||||.+|++|+|+||++++++.+.+.+ .. + .....++.+.|
T Consensus 311 ~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 390 (546)
T 2zy4_A 311 YSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQ 390 (546)
T ss_dssp EESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHH
T ss_pred EeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHH
Confidence 9999999999999999999775333332 11 0 11224677777
Q ss_pred HHH-----HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccc---cCCCh-------h
Q 044773 130 YLL-----SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLL---SSNTF-------E 194 (289)
Q Consensus 130 ~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~---~~~~~-------~ 194 (289)
.++ ++++.+. +.+.++.++.++++++.+.+.|. .++.+.++++|||+|++++... ....+ .
T Consensus 391 ~a~a~~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~ 466 (546)
T 2zy4_A 391 VQMALFSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQS 466 (546)
T ss_dssp HHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccC
Confidence 764 3455543 45678888999999999999996 5666678899999999986421 00000 0
Q ss_pred hHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 195 AEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 195 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
+..+++..+++++||.+.||..|+. +++++||+++..+++++++++++|+++++++....
T Consensus 467 ~~~~~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~~ 526 (546)
T 2zy4_A 467 STGDMLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELYAEY 526 (546)
T ss_dssp CHHHHHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124455667788999999999986 56899999986689999999999999998877544
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-31 Score=238.05 Aligned_cols=233 Identities=17% Similarity=0.337 Sum_probs=185.4
Q ss_pred hHHHhhhCCCccEE-EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i-~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++| ++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+..+. .
T Consensus 154 l~~~l~~~-~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~------~ 226 (397)
T 2zyj_A 154 LEEVLKRE-RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA------G 226 (397)
T ss_dssp HHHHHHHC-CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH------T
T ss_pred HHHHHhhc-CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc------C
Confidence 45555543 67887 5799999999999999999999999999999999999999877666556666652200 0
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.+++++++|+||.+| +|+|+||++++ +.+.+.+.... .....|++.|.++..+++...+ +++++.++.++++++
T Consensus 227 ~~~~i~~~s~sK~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~ 302 (397)
T 2zyj_A 227 YPGVIYLGSFSKVLS-PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQ 302 (397)
T ss_dssp CCCEEEEEESTTTTC-GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccccc-ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHH
Confidence 167899999999999 99999999996 44554444322 1233688999999999987642 668889999999999
Q ss_pred HHHHHHHhc---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEEecCC
Q 044773 159 KLVSGLEKA---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMS 233 (289)
Q Consensus 159 ~l~~~l~~~---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~~~~~ 233 (289)
++.+.|++. |+++..+.+|+++|++++...+ ..++...|+++ ||.+.||..|+.. .++++||+++..+
T Consensus 303 ~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~ 375 (397)
T 2zyj_A 303 AMLHALDREVPKEVRYTRPKGGMFVWMELPKGLS------AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLD 375 (397)
T ss_dssp HHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCC------HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSC
T ss_pred HHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCC------HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCC
Confidence 999999885 6888788889999999875322 24678887755 9999999988653 4689999998667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~ 252 (289)
++++++++++|++++++..
T Consensus 376 ~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 376 REGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987754
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-31 Score=241.89 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=183.1
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-----cCCEEEEecCCCCCccCCCCccChh-hhhhccc
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-----KNIHLISDEIYSGTVFSSPGFVSIM-EILKDRN 74 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-----~~~~li~Dea~~~~~~~~~~~~~~~-~~~~~~~ 74 (289)
+++++... .+++++++++||||||.+++.+++++|+++|++ +|+++|+||+|.++.+++....++. .+..
T Consensus 179 l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--- 255 (430)
T 2x5f_A 179 LVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTN--- 255 (430)
T ss_dssp HHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHT---
T ss_pred HHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhh---
Confidence 34555542 268999999999999999999999999999999 9999999999999877665455655 4421
Q ss_pred cccCCCCCc---eEEEecCccccCCCCceEEEEEe--cCHHHHHHHHhcc------ccCCCChHHHHHHHHHhC-CchHH
Q 044773 75 CENTEVWNR---VHIVYSLSKDLGLPGFRVGAIYS--NDDTVVAAATKMS------SFGLVSSQTQYLLSALLS-DKKFA 142 (289)
Q Consensus 75 ~~~~d~~~~---~i~i~s~sK~~g~~G~r~G~i~~--~~~~~~~~~~~~~------~~~~~~~~~q~~~~~~l~-~~~~~ 142 (289)
..++ +++++|+||.+|++|+|+||+++ +++.+.+.+.... ..+.+|++.|.++..+++ ...+
T Consensus 256 -----~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~- 329 (430)
T 2x5f_A 256 -----LHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF- 329 (430)
T ss_dssp -----TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-
T ss_pred -----ccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-
Confidence 2466 89999999999989999999999 2344444443322 234588899999999998 8766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
.+.+++.++.++++++.+.+.|+ +.|+++.++++|+|+|++++ .. +..+++..|++++||.+.||
T Consensus 330 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g---- 398 (430)
T 2x5f_A 330 DKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIAL---- 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEEC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecC----
Confidence 56677799999999999999998 56888888999999999987 22 22468888886589999997
Q ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 ~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.++++||+++..+++++++++++|++++++.
T Consensus 399 --~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 399 --NATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp --SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred --CCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 3579999998558999999999999988754
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-31 Score=238.12 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=186.3
Q ss_pred hHHHhh----hCCCccEE-EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccc
Q 044773 2 YQLAQK----RHLKVKGV-LVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~----~~~~~~~i-~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 76 (289)
+++++. ..+++++| ++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+
T Consensus 161 l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~------- 233 (407)
T 2zc0_A 161 LEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKAL------- 233 (407)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGG-------
T ss_pred HHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhc-------
Confidence 445555 43478887 578999999999999999999999999999999999999887766555555555
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHH-HHHHHHHHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQ-NYISENKKRL 153 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~ 153 (289)
+..+++++++||||.+| +|+|+||++++ +.+.+.+...... ...+++.|.++..+++...+ . +++++.++.+
T Consensus 234 --~~~~~~i~~~s~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 308 (407)
T 2zc0_A 234 --DNEGRVIVAGTLSKVLG-TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGY 308 (407)
T ss_dssp --CSSCCEEEEEESTTTTC-TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHH
T ss_pred --CCCCCEEEEcccccccC-CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHH
Confidence 23468899999999999 99999999996 5555555433222 33688999999999987644 5 6788889999
Q ss_pred HHHHHHHHHHHHhc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEE
Q 044773 154 KQRHRKLVSGLEKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCF 229 (289)
Q Consensus 154 ~~~~~~l~~~l~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~ 229 (289)
+++++++.+.|++. ++++..+.+|+++|++++...+ ..++...|++++||.+.||..|+.. .++++||++
T Consensus 309 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~ 382 (407)
T 2zc0_A 309 KEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGAD------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNF 382 (407)
T ss_dssp HHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCC------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCC------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEe
Confidence 99999999999875 6777778889999999875322 2568888886779999999988653 468999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+..+++++++++++|++++++.
T Consensus 383 ~~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 383 SRPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 7557899999999999998765
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=240.81 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=178.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. ..+++++++|
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~i~~~s 233 (386)
T 1u08_A 162 ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ--------LRERAVAVSS 233 (386)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH--------HHTTEEEEEE
T ss_pred ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC--------ccCcEEEEec
Confidence 47899999999999999999999999999999999999999999998776655455544421 2378899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++ +.+.+.+.... ..+..+++.|.++..+++.. .+++++.+++++++++++.+.|++.
T Consensus 234 ~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (386)
T 1u08_A 234 FGKTYHMTGWKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNES 309 (386)
T ss_dssp HHHHTTCGGGCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred chhhcCCcccceEEEEcC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999899999999996 44555444332 23447888898888888753 4567888999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+++..+++|+++|++++.... .+..+++..+++++||.+.||..|+. ..++++||+++. +++++++++++|+
T Consensus 310 g~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~ 384 (386)
T 1u08_A 310 RLEILPCEGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 384 (386)
T ss_dssp SCEECCCCBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHT
T ss_pred CCeecCCCceEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHh
Confidence 9998888889999999875310 12246778788788999999988864 246899999985 8999999999986
Q ss_pred H
Q 044773 246 A 246 (289)
Q Consensus 246 ~ 246 (289)
+
T Consensus 385 ~ 385 (386)
T 1u08_A 385 Q 385 (386)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=239.95 Aligned_cols=217 Identities=18% Similarity=0.297 Sum_probs=176.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++.+... ..+++++++|
T Consensus 157 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~--------~~~~~i~~~s 227 (376)
T 2dou_A 157 REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPG--------AKERVVELFS 227 (376)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTT--------GGGTEEEEEE
T ss_pred cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCC--------CCCcEEEEec
Confidence 3589999999999999999999999999999999999999999998876552 334443321 3467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++ +.+.+.+..... ..+.+++.|.++..+++.. .+++++.++.++++++++.+.|+++
T Consensus 228 ~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (376)
T 2dou_A 228 LSKSYNLAGFRLGFALGS-EEALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV 303 (376)
T ss_dssp HHHHHTCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhhcCChhheeEEEecC-HHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999899999999995 445544443322 2346889999999999873 5678889999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
+++.++.+|+++|++++...+ ..++...|+++ ||.+.||..|+...++++||+++. +++++++++++|+++
T Consensus 304 -~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 304 -LSLLPPRATMYLWGRLPEGVD------DLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREA 374 (376)
T ss_dssp -SEECCCCBSSEEEEECCTTCC------HHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHT
T ss_pred -cCccCCCeeEEEEEECCCCCC------HHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 888888889999999875322 24678888755 999999998875557899999985 899999999999876
Q ss_pred H
Q 044773 248 V 248 (289)
Q Consensus 248 l 248 (289)
+
T Consensus 375 l 375 (376)
T 2dou_A 375 L 375 (376)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=240.05 Aligned_cols=226 Identities=19% Similarity=0.313 Sum_probs=180.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. ..++++++.|
T Consensus 159 ~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--------~~~~~i~~~s 230 (411)
T 2o0r_A 159 PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG--------MAERTITISS 230 (411)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGEEEEEE
T ss_pred cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC--------CCCCEEEEee
Confidence 47899999999999999999999999999999999999999999988776655555554411 2478899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++ +.+.+.+..... .+..+++.|.++..+++.. .+++++.++.++++++++.+.|++.
T Consensus 231 ~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 306 (411)
T 2o0r_A 231 AAKMFNCTGWKIGWACGP-AELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEI 306 (411)
T ss_dssp HHHHTTCTTTCEEEEECC-HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceEEEEeeC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999995 555554443322 2346778888888888643 5668888999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-C----------CCCeEEEEEecCCHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-T----------EPGWFRVCFANMSEDT 236 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~----------~~~~~Ris~~~~~~e~ 236 (289)
|+++.++++|+++|++++... . .+..+++..+++++||.+.||..|.. . +++++||+++. ++++
T Consensus 307 g~~~~~~~~g~~~~~~~~~~~-~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~ 381 (411)
T 2o0r_A 307 GFAVHDSYGTYFLCADPRPLG-Y---DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDT 381 (411)
T ss_dssp TCEECCCCBSSEEEEECGGGT-C---CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHH
T ss_pred CCEecCCCeeEEEEEecCCCC-C---CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHH
Confidence 999888899999999987521 0 12246788888778999999988843 2 35789999985 8999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDSIT 252 (289)
Q Consensus 237 l~~~l~~l~~~l~~~~ 252 (289)
+++++++|++++++..
T Consensus 382 i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 382 LDEAIRRLSVLAERPA 397 (411)
T ss_dssp HHHHHHHHGGGGC---
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999988776543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=234.22 Aligned_cols=220 Identities=22% Similarity=0.410 Sum_probs=179.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. .+..++ .+++++++|+
T Consensus 161 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~-----------~~~~i~~~s~ 228 (391)
T 3h14_A 161 DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA-VTALEL-----------TDECYVINSF 228 (391)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGGT-----------CSSSEEEEES
T ss_pred CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC-cChhhc-----------CCCEEEEEec
Confidence 7899999999999999999999999999999999999999999988776542 333322 3678999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
||.+|++|+|+||++++++. .+.+..... .++.+++.|.++.+++.. .+++++.++.++++++.+.+.|++++
T Consensus 229 sK~~g~~G~r~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~ 303 (391)
T 3h14_A 229 SKYFSMTGWRVGWMVVPEDQ-VRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAG 303 (391)
T ss_dssp SSTTCCTTSCCEEEECCGGG-HHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCccceeEEEEeCHHH-HHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999996654 444433322 234778899988888873 56788899999999999999999887
Q ss_pred Cce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 169 ISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 169 ~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
+.. ..+.+++++|++++... .+..+++..+++++||.+.||..|+. ..++++||+++. +++++++++++|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 304 FTRIAPPDGAFYVYADVSDLT-----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEA 377 (391)
T ss_dssp CCCBCCCCBTTEEEEECTTTC-----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCcccCCCeeEEEEEecCccC-----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 654 57888899999987521 12256888888778999999999987 457899999986 88999999999999
Q ss_pred HHHHHHH
Q 044773 247 FVDSITT 253 (289)
Q Consensus 247 ~l~~~~~ 253 (289)
++++...
T Consensus 378 ~~~~~~~ 384 (391)
T 3h14_A 378 FMQARGE 384 (391)
T ss_dssp HHHHC--
T ss_pred HHHHhcc
Confidence 9887654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=237.22 Aligned_cols=234 Identities=18% Similarity=0.162 Sum_probs=178.1
Q ss_pred hHHHhhhCCCccEEE-EeCCCCCCccCCCHHHHHHHHHHHH-HcCCEEEEecCCCCCccC--CCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHLKVKGVL-VTNPSNPLGTTMSRNELNLLVNFIT-EKNIHLISDEIYSGTVFS--SPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~~~~~i~-l~~p~NPtG~~~~~~~l~~l~~~~~-~~~~~li~Dea~~~~~~~--~~~~~~~~~~~~~~~~~~ 77 (289)
++++++. .++++|+ +++||||||.+++.+++++|+++|+ ++++++|+||+|....+. +....++.++....
T Consensus 170 l~~~l~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~---- 244 (422)
T 3d6k_A 170 VRELVKD-PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA---- 244 (422)
T ss_dssp HHHHHTS-TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT----
T ss_pred HHHHHhc-CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc----
Confidence 3444543 2689887 7899999999999999999999999 999999999999863333 33344554432110
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCC-chHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSD-KKFAQNYISENKKRLK 154 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~ 154 (289)
+..+++++++||||. +++|+|+||++++ +.+.+.+..... .++++++.|.++..++++ +.+ .+++++.++.++
T Consensus 245 -~~~~~~i~~~S~SK~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~ 320 (422)
T 3d6k_A 245 -GNPNRFWFMSSTSKI-THAGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLA 320 (422)
T ss_dssp -TCTTCEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHH
T ss_pred -CCCCcEEEEcChhhh-cCcccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHH
Confidence 245789999999999 6699999999996 445554443322 244788999999999998 555 788999999999
Q ss_pred HHHHHHHHHHHh----cC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCC---CCCCeE
Q 044773 155 QRHRKLVSGLEK----AG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEPGWF 225 (289)
Q Consensus 155 ~~~~~l~~~l~~----~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~~ 225 (289)
++++.+.+.|.+ .| +.+..|++|+|+|++++.. +...+.. +++++||.+.| |..|+. ..++++
T Consensus 321 ~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~-~l~~~gV~v~~~g~~f~~~~~~~~~~i 392 (422)
T 3d6k_A 321 PKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------TASRVVE-LAKEAGIALTGAGSSFPLHNDPNNENI 392 (422)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------CHHHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEE
T ss_pred HHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------CHHHHHH-HHHHCCeEEEcCccccCCCCCCCCCeE
Confidence 999999888875 33 5667888999999999753 1123444 55688999999 555641 236899
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
||+++.++++++++++++|++++++..
T Consensus 393 Ris~~~~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 393 RLAPSLPPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999985689999999999999988764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=237.64 Aligned_cols=228 Identities=23% Similarity=0.386 Sum_probs=179.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC----CccChhhhhhccccccCCCCCceE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP----GFVSIMEILKDRNCENTEVWNRVH 85 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~i 85 (289)
++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+ +..++++
T Consensus 176 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~i 246 (416)
T 1bw0_A 176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF---------ETTVPRV 246 (416)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS---------CCSCCEE
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc---------cCCCcEE
Confidence 4688999999999999999999999999999999999999999999877665 34444443 2335689
Q ss_pred EEecCccccCCCCceEEEEEecCH-----HHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 86 IVYSLSKDLGLPGFRVGAIYSNDD-----TVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 86 ~i~s~sK~~g~~G~r~G~i~~~~~-----~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+++|+||.++++|+|+||++++++ .+........ ..+..|++.|.++..+++... ..++++.++++++++++
T Consensus 247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~ 324 (416)
T 1bw0_A 247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMY 324 (416)
T ss_dssp EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHH
T ss_pred EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 999999999889999999999774 2222222221 234578899999999988532 55678888999999999
Q ss_pred HHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 160 LVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 160 l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
+.+.|+++ |+.+..+.+|+|+|++++...-.. ..+..+++..+++++||.+.||..|+. ++++||+++ .++++++
T Consensus 325 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~e~l~ 400 (416)
T 1bw0_A 325 LYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRD-IKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEVYR 400 (416)
T ss_dssp HHHHHTTSTTEEECCCCBTTEEEEEECGGGBSS-CCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHHHHH
T ss_pred HHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCC-CCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCHHHHH
Confidence 99999987 888877888899998886421000 012346778887788999999998874 579999997 5899999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 239 LSMQRLKAFVDSIT 252 (289)
Q Consensus 239 ~~l~~l~~~l~~~~ 252 (289)
+++++|.+++++..
T Consensus 401 ~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 401 EAVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987643
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=235.74 Aligned_cols=223 Identities=23% Similarity=0.423 Sum_probs=180.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+..+ ..++++++.|
T Consensus 162 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s 234 (388)
T 1j32_A 162 PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE-------AYERSVVCSG 234 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHHTEEEEEE
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccc-------ccCCEEEEee
Confidence 468999999999999999999999999999999999999999999987766555565555221 1467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++++ +.+.+..... ...++++.|.++..+++.. .+++++.++.++++++++.+.|++.
T Consensus 235 ~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 235 FAKTYAMTGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp STTTTTCTTTCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhccCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999989999999999654 5444443322 2347788888888888743 4557888899999999999999988
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
|+++..+.+++++|++++.. . .+..+++..|++++||.+.||..|+. ++++||+++ ++++++++++++|++
T Consensus 311 ~g~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~i~~~~~~l~~ 382 (388)
T 1j32_A 311 PGLECPKPDGAFYMFPSIAKT-G----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLDTIKRGMERLEK 382 (388)
T ss_dssp TTCBCCCCCBTTEECCBCGGG-T----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECC-SCHHHHHHHHHHHHH
T ss_pred CCCcccCCCeeEEEEEecCCC-C----CCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEec-CCHHHHHHHHHHHHH
Confidence 88888889999999887642 0 12246888887668999999998864 579999998 599999999999999
Q ss_pred HHHHH
Q 044773 247 FVDSI 251 (289)
Q Consensus 247 ~l~~~ 251 (289)
++++.
T Consensus 383 ~l~~~ 387 (388)
T 1j32_A 383 FLHGI 387 (388)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88653
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=233.56 Aligned_cols=228 Identities=20% Similarity=0.315 Sum_probs=182.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ...+. +. +..
T Consensus 167 l~~~l~--~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~---~~-------~~~ 233 (409)
T 2gb3_A 167 LESFIN--ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA---LS-------IES 233 (409)
T ss_dssp GGGGCC--TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG---GG-------SCC
T ss_pred HHHhhC--cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc---cc-------cCC
Confidence 344443 368999999999999999999999999999999999999999999877655 22332 11 123
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+++++++|+||.+|++|+|+||++++++.+.+.+......+ ..+++.|.++..+++.. ..++++.++.++++++++
T Consensus 234 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l 310 (409)
T 2gb3_A 234 DKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETV 310 (409)
T ss_dssp TTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998735555444433222 57889999999999763 556888899999999999
Q ss_pred HHHHHhcCCce-ecCCceEEEEEecCccccCCChhhHHHHHHHHHHh-----cCeEEeCCCCCCC---CCCCeEEEEEec
Q 044773 161 VSGLEKAGISC-LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYD-----VKLNISPGSSCHC---TEPGWFRVCFAN 231 (289)
Q Consensus 161 ~~~l~~~g~~~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~---~~~~~~Ris~~~ 231 (289)
.+.|++.|+++ ..+.+|+++|++++ .. +..+++..|+++ +||.+.||..|+. .+++++||+++
T Consensus 311 ~~~L~~~g~~~~~~~~~~~~~~~~~~-~~------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~- 382 (409)
T 2gb3_A 311 LKKLEEHGLKRFTKPSGAFYITAELP-VE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV- 382 (409)
T ss_dssp HHHHHHTTCCCBCCCSBSSEEEEECS-SS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-
T ss_pred HHHHHHcCceeeeCCCeeEEEEEEeC-CC------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-
Confidence 99999888888 77888999999886 11 224678888766 5999999988865 24689999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++++++++++|++++++...
T Consensus 383 ~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 383 LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhhh
Confidence 6999999999999999887643
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=236.77 Aligned_cols=223 Identities=24% Similarity=0.355 Sum_probs=179.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc-eEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR-VHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~i~i~ 88 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++ ....++..+ + .++ +++++
T Consensus 173 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~---------~-~~~~~i~~~ 241 (406)
T 1xi9_A 173 DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE-GEHISPGSL---------T-KDVPVIVMN 241 (406)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSS-SCCCCHHHH---------C-SSSCEEEEE
T ss_pred cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccC-CCCCCHHHc---------C-CCceEEEEe
Confidence 36899999999999999999999999999999999999999999988763 333455554 2 467 89999
Q ss_pred cCccccCCCCceEEEEE--ecCH---HHHHHHHhcccc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIY--SNDD---TVVAAATKMSSF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~--~~~~---~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
|+||.+|++|+|+||++ +++. .+.+.+...... +..+++.|.++..+++.. .+++++.++.++++++++.+
T Consensus 242 s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~ 318 (406)
T 1xi9_A 242 GLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYK 318 (406)
T ss_dssp ESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHH
Confidence 99999998999999999 7651 444444333222 457889999999998643 23478888999999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|++. ++++..+++|+++|++++.... .+..+++..+++++||.+.||..|+..+++++||+++ ++++++++++
T Consensus 319 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~ 393 (406)
T 1xi9_A 319 RLNEIPGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAM 393 (406)
T ss_dssp HHHTSTTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHH
T ss_pred HHHhCCCCeeecCCeeEEEEEecCccCC----CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHH
Confidence 99988 8888888889999988864211 1224677888767899999999887655689999999 6999999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
++|++++++.
T Consensus 394 ~~l~~~l~~~ 403 (406)
T 1xi9_A 394 DRFEKFMKER 403 (406)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=236.18 Aligned_cols=235 Identities=17% Similarity=0.120 Sum_probs=182.0
Q ss_pred hHHHhhhCCCccEEEEe-CCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEecCCCCCccCCCC--ccChhhhhhcccccc
Q 044773 2 YQLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNFI-TEKNIHLISDEIYSGTVFSSPG--FVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~-~p~NPtG~~~~~~~l~~l~~~~-~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (289)
++++++ .+++++|+++ +||||||.+++.+++++|+++| +++|+++|+||+|.++.|.+.. ..++.++....
T Consensus 172 l~~~l~-~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~---- 246 (427)
T 3ppl_A 172 VEELVK-NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA---- 246 (427)
T ss_dssp HHHHTT-STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT----
T ss_pred HHHHHh-cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhcc----
Confidence 344442 3578988755 7799999999999999999999 9999999999999987776543 33555553110
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+..+++++++||||. +++|+|+||++++ +.+.+.+.... ....++++.|.++..++++...+.+++++.++.+++
T Consensus 247 -~~~~~~i~~~S~SK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (427)
T 3ppl_A 247 -GNPNRFWAFTSTSKI-TLAGAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAP 323 (427)
T ss_dssp -TCTTSEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred -CCCCcEEEEechhhc-cCcCccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Confidence 245789999999999 5699999999996 44444444332 234478899999999999833237889999999999
Q ss_pred HHHHHHHHHHhc-----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCC---CCCCeEE
Q 044773 156 RHRKLVSGLEKA-----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEPGWFR 226 (289)
Q Consensus 156 ~~~~l~~~l~~~-----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~~R 226 (289)
+++.+.+.|.+. ++.+..|++|+|+|++++.. + ..++...+ .++||.+.| |..|+. ..++++|
T Consensus 324 ~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~------~~~~~~~l-~~~gv~v~~~g~~~~~~~~~~~~~~R 395 (427)
T 3ppl_A 324 KFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-T------ASRVAELA-KEAGIALTGAGSSYPLRQDPENKNLR 395 (427)
T ss_dssp HHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-C------HHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEE
T ss_pred HHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-h------HHHHHHHH-HHCCCEEecCcCcCCCCCCCCCCeEE
Confidence 999998888653 47778899999999999863 1 23465554 577999999 555542 3578999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
|+++..+++++++++++|++++++..
T Consensus 396 is~~~~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 396 LAPSLPPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99986689999999999999988764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=233.71 Aligned_cols=224 Identities=17% Similarity=0.196 Sum_probs=178.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.. ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ...++.....+. +.+..
T Consensus 147 l~~~~~~--~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 220 (376)
T 3ezs_A 147 LNEKELQ--EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLA---GNEAF 220 (376)
T ss_dssp CCHHHHH--HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHT---TCTTC
T ss_pred HHhhhcc--CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccc---ccccc
Confidence 3445543 58999999999999999999999999999999999999999999987766 344544442100 00135
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
++++++.|+||.+|++|+|+||++++ +.+.+.+..... .+..|++.+.++..+++... ++++.++.++++++.
T Consensus 221 ~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~ 295 (376)
T 3ezs_A 221 KNVLVIHSLSKRSSAPGLRSGFIAGD-SRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDR----HAEFFRNIYANNLKL 295 (376)
T ss_dssp TTEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSH----HHHHHHHHHHHHHHH
T ss_pred CcEEEEecchhccCCccceeEEEeeC-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcH----HHHHHHHHHHHHHHH
Confidence 78999999999999999999999995 555555544332 23478899999999998743 478888999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC--CCCCCeEEEEEecCCHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH--CTEPGWFRVCFANMSEDTL 237 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~~Ris~~~~~~e~l 237 (289)
+.+.|+ ++. .+.+|+++|++++ + ..+++..|++++||.+.||..|+ ...++++||+++. +++++
T Consensus 296 l~~~l~--~~~--~~~~~~~~~~~~~---~------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i 361 (376)
T 3ezs_A 296 ARKIFK--NTL--IYPYSFYVYLPVQ---N------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLL 361 (376)
T ss_dssp HHHHST--TCC--CCSBSSEEEEECS---C------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHH
T ss_pred HHHHhc--CCC--CCCcceEEEEECC---C------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHH
Confidence 999998 554 6788899999987 1 24678888865899999999998 4567899999985 99999
Q ss_pred HHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDS 250 (289)
Q Consensus 238 ~~~l~~l~~~l~~ 250 (289)
++++++|++++++
T Consensus 362 ~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 362 EKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=244.90 Aligned_cols=228 Identities=23% Similarity=0.349 Sum_probs=178.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHH-HcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFIT-EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~-~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++||||||.+++.+++++|+++|+ ++++++|+||+|.++.++ ..++... ..+++++++
T Consensus 243 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~---~~~~~~~----------~~~~~i~~~ 309 (533)
T 3f6t_A 243 PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN---FKSIYSV----------VPYNTMLVY 309 (533)
T ss_dssp TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT---CCCHHHH----------SGGGEEEEE
T ss_pred CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC---ccCHhhc----------CCCCEEEEe
Confidence 57999999999999999999999999999999 589999999999987543 3444444 237899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHH------------------------------------Hhc--cccCCCChHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAA------------------------------------TKM--SSFGLVSSQTQY 130 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~------------------------------------~~~--~~~~~~~~~~q~ 130 (289)
||||.+|++|+|+||++++++.+.+.+ ... ....+.+++.|.
T Consensus 310 S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~ 389 (533)
T 3f6t_A 310 SYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQI 389 (533)
T ss_dssp ESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHH
T ss_pred cCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHH
Confidence 999999999999999999776222211 111 123346677887
Q ss_pred HH----HHHhC-C---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCcccc---CCCh------
Q 044773 131 LL----SALLS-D---KKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLS---SNTF------ 193 (289)
Q Consensus 131 ~~----~~~l~-~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~---~~~~------ 193 (289)
++ ..++. + ..+ .+++++.++.++++++.+.+.|. .++.+..+++|+|+|++++.... ...+
T Consensus 390 a~a~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~ 467 (533)
T 3f6t_A 390 MEALFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTN 467 (533)
T ss_dssp HHHHHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhc
Confidence 73 34453 1 223 67789999999999999999998 78888889999999999874211 0000
Q ss_pred -hhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 194 -EAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 194 -~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+..+++..+++++||.+.||+.|+. +++++||+++.++++++++++++|+++++++..
T Consensus 468 ~~~~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 468 NFEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HCCHHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 12246778888899999999999986 578999999867999999999999999988765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=232.85 Aligned_cols=222 Identities=19% Similarity=0.277 Sum_probs=175.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++++++++||||||.+++.+++++|+++|+++|+++|+||+|... +.+..... ..+ +..+++++++
T Consensus 178 ~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~---~~~-------~~~~~~i~~~ 246 (417)
T 3g7q_A 178 GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSE---ARP-------LWNPNIILCM 246 (417)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSC---CCC-------CCCTTEEEEE
T ss_pred ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccc---ccc-------CCCCCEEEEE
Confidence 457899999999999999999999999999999999999999999753 21111111 111 2457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISE-NKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 165 (289)
|||| ++++|+|+||++++ +.+.+.+..... ...++++.|.++..++++..+ .++..+ .++.++++++.+.+.|.
T Consensus 247 s~sK-~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T 3g7q_A 247 SLSK-LGLPGSRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAIIR 323 (417)
T ss_dssp ESGG-GTCTTSCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred echh-ccCCCcceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 57899999999995 455555443322 233688999999999998876 555555 78889999999999987
Q ss_pred hc----CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCeEEEEEecCC
Q 044773 166 KA----GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-------PGWFRVCFANMS 233 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-------~~~~Ris~~~~~ 233 (289)
+. ++.+..+++|+++|++++. ..+ ..+++..| .++||.+.||..|+... ++++||+++. +
T Consensus 324 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~-~ 395 (417)
T 3g7q_A 324 RYLSEERCLIHKPEGAIFLWLWFKDLPIT------TELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP-E 395 (417)
T ss_dssp HHCCTTTCEEECCCBSSEEEEECTTCSSC------HHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS-C
T ss_pred HhcccCCceeeCCCcceEEEEEcCCCCCC------HHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecC-C
Confidence 74 5788889999999999885 222 24577776 47799999999887533 5799999996 9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~ 252 (289)
++++++++++|++++++..
T Consensus 396 ~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 396 PDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=233.10 Aligned_cols=236 Identities=17% Similarity=0.199 Sum_probs=181.2
Q ss_pred hHHHhhhCCCccEEEE-eCCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEecCCCCCccCC---CCccChhhhhhccccc
Q 044773 2 YQLAQKRHLKVKGVLV-TNPSNPLGTTMSRNELNLLVNFI-TEKNIHLISDEIYSGTVFSS---PGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l-~~p~NPtG~~~~~~~l~~l~~~~-~~~~~~li~Dea~~~~~~~~---~~~~~~~~~~~~~~~~ 76 (289)
+++++++.+++++|++ ++||||||.+++.+++++|+++| +++|+++|+||+|..+.+.+ ....++.++....
T Consensus 163 l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~--- 239 (423)
T 3ez1_A 163 VERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA--- 239 (423)
T ss_dssp HHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHH---
T ss_pred HHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhcc---
Confidence 4555554568999865 48899999999999999999999 99999999999999765544 2334555543111
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCC--chHHHHHHHHHHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSD--KKFAQNYISENKKR 152 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~ 152 (289)
+..+++++++||||. +++|+|+||+++++ .+.+.+..... ....+++.|.++..++.+ ..+ .+++++.++.
T Consensus 240 --~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~ 314 (423)
T 3ez1_A 240 --GYPDRAFVFASTSKI-TFAGAGLGFVASSE-DNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLMRDHAAI 314 (423)
T ss_dssp --TCTTSEEEEEESTTT-SCSSSSCEEEEECH-HHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHHHHHHHH
T ss_pred --CCCCeEEEEeCchhh-ccCCcceEEEEeCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHHHHHHHH
Confidence 245889999999999 46999999999965 44444443322 244788999999999987 554 7888888999
Q ss_pred HHHHHHHHHHHHHh----cC--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCC---CCC
Q 044773 153 LKQRHRKLVSGLEK----AG--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHC---TEP 222 (289)
Q Consensus 153 ~~~~~~~l~~~l~~----~g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~ 222 (289)
++++++.+.+.|.+ .| +.+..|++|+|+|++++.. + ...+.. +++++||.+.| |..|+. ..+
T Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~------~~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~ 386 (423)
T 3ez1_A 315 IAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-V------ADRVVK-LAEAAGVSLTPAGATYPAGQDPHN 386 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-C------HHHHHH-HHHHTTEECCCTTTTSSTTCCSSS
T ss_pred HHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-c------HHHHHH-HHHHCCcEEecCcccccCCCCCCC
Confidence 99998888888765 34 6777889999999998753 1 123444 45688999999 667753 346
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++||+++..+++++++++++|++++++...
T Consensus 387 ~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 387 RNLRLAPTRPPVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999756999999999999999987654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=231.37 Aligned_cols=213 Identities=27% Similarity=0.508 Sum_probs=174.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ...++..+.. ..+++++++|
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~--------~~~~~i~~~s 243 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSE--------GFDRIVYING 243 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCS--------SSTTEEEEEE
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCC--------CCCcEEEEee
Confidence 468999999999999999999999999999999999999999999877655 3345555511 2478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||+++++ .+.+.+..... ....+++.|.++..+++.. +++.++.++++++++.+.|++.
T Consensus 244 ~sK~~~~~G~r~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~ 316 (389)
T 1o4s_A 244 FSKSHSMTGWRVGYLISSE-KVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKM 316 (389)
T ss_dssp STTTTTCGGGCCEEEECCH-HHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccceEEEEeCH-HHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998999999999954 45544443322 2447888999988888874 4677788899999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..+.+|+++|++++ .+ ..++...|++++||.+.||..|+. ++++||+++. +++++++++++|+++
T Consensus 317 g~~~~~~~~~~~~~~~~~--~~------~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~ 385 (389)
T 1o4s_A 317 GVKFVEPEGAFYLFFKVR--GD------DVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDF 385 (389)
T ss_dssp TCCCCCCSBSSEEEEECS--SC------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CCeeecCCcceEEEEeCC--CC------HHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHH
Confidence 888888889999999886 11 246788887677999999998874 4699999995 999999999999987
Q ss_pred HH
Q 044773 248 VD 249 (289)
Q Consensus 248 l~ 249 (289)
++
T Consensus 386 l~ 387 (389)
T 1o4s_A 386 LN 387 (389)
T ss_dssp HT
T ss_pred Hh
Confidence 64
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=235.86 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=180.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCcc----Ch-hhhhhccccc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFV----SI-MEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~----~~-~~~~~~~~~~ 76 (289)
++++++. +++++|++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++.... ++ ..+ .
T Consensus 174 l~~~l~~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-~----- 246 (437)
T 3g0t_A 174 LESYLQT-GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV-A----- 246 (437)
T ss_dssp HHHHHTT-TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG-G-----
T ss_pred HHHHHhc-CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc-C-----
Confidence 3455533 4799999999999999999999999999999999999999999998777532211 11 223 1
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHH-H-----------------HHhcc--ccCCCChHHHHHHHHHh
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA-A-----------------ATKMS--SFGLVSSQTQYLLSALL 136 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~-~-----------------~~~~~--~~~~~~~~~q~~~~~~l 136 (289)
+..+++++++|+||.+|++|+|+||+++++ .+.+ . +.... ..+..+++.+.++..++
T Consensus 247 --~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 323 (437)
T 3g0t_A 247 --NYTDNYILALSSSKAFSYAGQRIGVLMISG-KLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAML 323 (437)
T ss_dssp --GTCSCEEEEEESTTTTSCGGGCCEEEEECH-HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHH
T ss_pred --CCCCcEEEEEcCccCCCCccceeEEEEECH-HHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence 135888999999999999999999999964 4444 3 33322 23458889999999998
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcee-------cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCL-------KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKL 209 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi 209 (289)
+.......++++.+++++++++++.+.|+++|+++. ++.+++++|++++ .. +..++...|. ++||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~l~~~L~-~~gi 395 (437)
T 3g0t_A 324 KACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK-GM------DSSKLIEKFV-RYGM 395 (437)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET-TC------CHHHHHHHHH-HTTE
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC-CC------CHHHHHHHHH-HcCe
Confidence 864311222788899999999999999999888887 4488899999987 22 2246788777 5599
Q ss_pred EEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 210 NISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 210 ~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
.+.|+..|+...++++||+++..+++++++++++|++++++
T Consensus 396 ~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 396 CAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp ECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999865558899999866899999999999998753
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=232.05 Aligned_cols=214 Identities=24% Similarity=0.421 Sum_probs=174.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+ |+++|+++|+++|+||+|.++.+++. ..++.++. +..+++++++|
T Consensus 153 ~~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--------~~~~~~i~~~s 219 (370)
T 2z61_A 153 DKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFD--------ENLEKTILING 219 (370)
T ss_dssp SSEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTC--------TTCSSEEEEEE
T ss_pred cCceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHcc--------CCCCcEEEEec
Confidence 3689999999999999999955 99999999999999999998777653 34544441 13478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSD-KKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.+|++|+|+||+++++ .+.+.+.... ..+..|++.|.++..+++. . .+++++.++.++++++++.+.|++
T Consensus 220 ~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 295 (370)
T 2z61_A 220 FSKLYAMTGWRIGYVISND-EIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKD 295 (370)
T ss_dssp STTTTTCGGGCCEEEECCH-HHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhccCCccceEEEEEECH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998999999999965 5555444332 2235788999988888875 3 566888899999999999999998
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
+|+++..+++|+++|++++. + ..++...|++++||.+.||..|+..+++++||+++ ++++++++++++|++
T Consensus 296 ~g~~~~~~~~~~~~~~~~~~--~------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 296 FGWEVNNPIGAYYVFPNIGE--D------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENIKEGLERIKE 366 (370)
T ss_dssp TTCBCCCCCBTTEECCBCSS--C------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHHHHHHHHHHH
T ss_pred cCCeecCCCcceEEEEecCC--C------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHH
Confidence 88888888899999998875 1 24578888767899999999887545689999999 599999999999998
Q ss_pred HHH
Q 044773 247 FVD 249 (289)
Q Consensus 247 ~l~ 249 (289)
+++
T Consensus 367 ~l~ 369 (370)
T 2z61_A 367 FLN 369 (370)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=233.32 Aligned_cols=218 Identities=13% Similarity=0.238 Sum_probs=171.1
Q ss_pred Ccc-EEEEeCC-CCCCccCCCHHHHHHHHHHHH------HcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 11 KVK-GVLVTNP-SNPLGTTMSRNELNLLVNFIT------EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 11 ~~~-~i~l~~p-~NPtG~~~~~~~l~~l~~~~~------~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++ ++++++| |||||.+++.+++++|+++|+ ++++++|+||+|.++.+++....++....++ ..+
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-------~~~ 250 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSH-------LPK 250 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTT-------CCT
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHh-------cCC
Confidence 345 7899999 999999999999999999999 8999999999999876554333333333221 223
Q ss_pred c--eEEEecCccccCCCCceEEEEEe--cCHHHHHHHHhcc------ccCCCChHHHHHHHHHhCCchHH---HHHHHHH
Q 044773 83 R--VHIVYSLSKDLGLPGFRVGAIYS--NDDTVVAAATKMS------SFGLVSSQTQYLLSALLSDKKFA---QNYISEN 149 (289)
Q Consensus 83 ~--~i~i~s~sK~~g~~G~r~G~i~~--~~~~~~~~~~~~~------~~~~~~~~~q~~~~~~l~~~~~~---~~~~~~~ 149 (289)
+ +++++||||.+|++|+|+||+++ +++.+.+.+.... .+..++.+.|.++..++++..+. .+..++.
T Consensus 251 ~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 330 (418)
T 3rq1_A 251 EILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCY 330 (418)
T ss_dssp TEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4 58899999999999999999998 2455555444321 22447889999999999986421 4455677
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 150 KKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
++.++++++++.+.|+++|+++.++++|+|+|+++.+ ..+++..| +++||.+.|| ++++||++
T Consensus 331 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l-~~~gi~v~~g-------~~~iRis~ 393 (418)
T 3rq1_A 331 YQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICEEL-KKEHIYVIAL-------ANGIRIAA 393 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHHHH-HHTTEECEEC-------SSEEEEEG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHHHH-HhCCEEEecC-------CCCeEEEE
Confidence 8899999999999999889999999999999988742 24566654 6789999997 35899999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHH
Q 044773 230 ANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 230 ~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+.++++++++++++|++++++..
T Consensus 394 ~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 394 CGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp GGSCHHHHTTHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHHHHHHHHHHHHh
Confidence 75699999999999999987653
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=230.87 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=175.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+ +....++.++ ..+++++++|
T Consensus 151 ~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~----------~~~~~~~~~s 219 (381)
T 1v2d_A 151 PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF----------APERTFTVGS 219 (381)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH----------CTTTEEEEEE
T ss_pred cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh----------cCCCEEEEee
Confidence 4689999999999999999999999999999999999999999998866 5444555554 1367899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+||.+|++|+|+||++++++.+ +.+.... ..++.+++.|.++..+++...+ .+++++.+++++++++++.+.|++.
T Consensus 220 ~sK~~~~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (381)
T 1v2d_A 220 AGKRLEATGYRVGWIVGPKEFM-PRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM 297 (381)
T ss_dssp HHHHTTCGGGCCEEEECCTTTH-HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccceEEEEeCHHHH-HHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999998999999999965543 3333222 2344788899888888875432 4567888999999999999999998
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+++..+.+|+++|++++.. + ...+++++||.+.||..|+. ..++++||+++. +++++++++++|+
T Consensus 298 g~~~~~~~~~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~ 365 (381)
T 1v2d_A 298 GLRVYVPEGTYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLG 365 (381)
T ss_dssp TCCEECCSBSSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHH
T ss_pred CCEecCCCcceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHH
Confidence 99998888899999988742 1 34456688999999998875 346799999986 9999999999999
Q ss_pred HHHHHHHH
Q 044773 246 AFVDSITT 253 (289)
Q Consensus 246 ~~l~~~~~ 253 (289)
+++++...
T Consensus 366 ~~l~~~r~ 373 (381)
T 1v2d_A 366 RVVNSPRE 373 (381)
T ss_dssp HHC-----
T ss_pred HHHhhccc
Confidence 98876543
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=228.46 Aligned_cols=222 Identities=22% Similarity=0.324 Sum_probs=181.0
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++++ +++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.++ ...+..+ ..+
T Consensus 148 ~~~l~--~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~~~-----------~~~ 212 (375)
T 3op7_A 148 RQLIR--PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSIIE-----------VYD 212 (375)
T ss_dssp HHHCC--TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCHHH-----------HCT
T ss_pred HHhhc--cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCchhh-----------hcC
Confidence 44443 47899999999999999999999999999999999999999999987654 2233333 236
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
++++++||||.+|++|+|+||+++ ++.+.+.+...... ...+++.+.++..+++.. +.++++.++.++++++.+
T Consensus 213 ~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l 288 (375)
T 3op7_A 213 KGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY---QEILERNRHILEENLAIL 288 (375)
T ss_dssp TEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999 56666666554432 335778888888888752 667888899999999999
Q ss_pred HHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 161 VSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 161 ~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
.+.|++. ++.+..+.+|++.|+.++...+ ..+++..+++++||.+.||..|+. ++++||+++. +.+++++
T Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~~g~~~~~--~~~iRi~~~~-~~~~i~~ 359 (375)
T 3op7_A 289 DQWIEEEPLVSYIRPAVVSTSFVKIAVDMP------MEDFCLQLLQEHGVLLVPGNRFER--DGYVRLGFAC-EQETLIK 359 (375)
T ss_dssp HHHHHHCTTEEECCCSSSSCEEEEECCSSC------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEECCCS-CHHHHHH
T ss_pred HHHHhhCCCceEecCCCeEEEeEEcCCCCC------HHHHHHHHHHhCCEEEeChhhhCC--CCeEEEEecC-CHHHHHH
Confidence 9999987 7888888898888888875432 256888887788999999998875 6899999985 6699999
Q ss_pred HHHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSIT 252 (289)
Q Consensus 240 ~l~~l~~~l~~~~ 252 (289)
++++|.+++++..
T Consensus 360 ~l~~l~~~l~~~~ 372 (375)
T 3op7_A 360 GLEKLSQFLRRFD 372 (375)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887543
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=230.63 Aligned_cols=212 Identities=23% Similarity=0.445 Sum_probs=170.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH------cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE------KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~------~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
+++++|++++||||||.+++.+++++|+++|++ +|+++|+||+|.++.+++.......+ ..++
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-----------~~~~ 239 (398)
T 3ele_A 171 AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK-----------YYDN 239 (398)
T ss_dssp TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG-----------TCSS
T ss_pred cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh-----------hcCC
Confidence 468999999999999999999999999999999 99999999999998776644333322 3368
Q ss_pred eEEEecCccccCCCCceEEEEEecCHH-----HHHHHHh---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 84 VHIVYSLSKDLGLPGFRVGAIYSNDDT-----VVAAATK---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G~r~G~i~~~~~~-----~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
+++++|+||.+|++|+|+||++++++. +...... .......+.+.|.++..++.... .++.+++
T Consensus 240 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~ 311 (398)
T 3ele_A 240 TLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--------DINAYKE 311 (398)
T ss_dssp EEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC--------CHHHHHH
T ss_pred eEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH--------HHHHHHH
Confidence 899999999999999999999997652 2222222 12234466788888888887653 2467788
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHH
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 235 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e 235 (289)
+++++.+.|+++|+++..+.+|+++|++++.. + ..++...| .++||.+.||..|+. ++++||+++ ++++
T Consensus 312 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~-~~~e 380 (398)
T 3ele_A 312 NRDLLYEGLTRIGYHCFKPDGAFYMFVKALED-D------SNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYC-VDRE 380 (398)
T ss_dssp HHHHHHHHHHHHTCCEECCSBSSEEEEECSSS-C------HHHHHHHH-HTTTEECEESGGGTC--TTEEEEECC-SCHH
T ss_pred HHHHHHHHHHHcCCeecCCCeeEEEEEEcCCC-C------HHHHHHHH-HHCCEEEeCccccCC--CCeEEEEec-CCHH
Confidence 88899999988899999999999999998742 1 24566655 577999999999875 679999998 5999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 236 TLKLSMQRLKAFVDSI 251 (289)
Q Consensus 236 ~l~~~l~~l~~~l~~~ 251 (289)
++++++++|++++++.
T Consensus 381 ~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 381 MIKHSMPAFEKIYKKY 396 (398)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=222.45 Aligned_cols=213 Identities=18% Similarity=0.306 Sum_probs=173.6
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++ ...+..... +..+++++++|+|
T Consensus 145 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~--------~~~~~~i~~~s~s 214 (361)
T 3ftb_A 145 VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD--PSSSFVGEI--------KNYSCLFIIRAMT 214 (361)
T ss_dssp CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC--TTSSSGGGT--------TTCSSEEEEEESS
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC--cccchhHhc--------ccCCCEEEEeeCh
Confidence 899999999999999999999999999999999999999999987665 223333332 2457889999999
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GIS 170 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 170 (289)
|.+|++|+|+||+++.++.+.+.+......+..|++.+.++..+++. .+++++.+++++++++++.+.|+++ ++.
T Consensus 215 K~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 290 (361)
T 3ftb_A 215 KFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKD----TNYIEESLLWIKKERKRFIEELNKIGFIK 290 (361)
T ss_dssp STTSCGGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred hhcCCCCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999546777777776665666889999999999986 4568888999999999999999988 777
Q ss_pred -eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 171 -CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 171 -~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+.++.++ ++|++++. . +..++...|.++ ||.+.||..|+..+++++||+++ ++++++++++.|+++.+
T Consensus 291 ~~~~~~~~-~~~~~~~~-~------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 291 RVFSPHAN-FVLCRLEN-I------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp EEECCSSS-EEEEEESS-S------CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred eecCCCCe-EEEEEcCC-C------CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 6666665 67788775 1 124677877754 99999999998777899999997 56777777777776654
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=233.04 Aligned_cols=218 Identities=15% Similarity=0.253 Sum_probs=171.1
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (289)
++++++..+ +.+++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+..
T Consensus 173 l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~------- 245 (409)
T 4eu1_A 173 MLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD------- 245 (409)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT-------
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh-------
Confidence 455565433 456667799999999999999999999999999999999999999876542 1233333322
Q ss_pred CCCCceEEEecCccccCCCCceEEEE--EecCHH----HHHHHHhc--cccCCCChHHHHHHHHHhCCchHH---HHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAI--YSNDDT----VVAAATKM--SSFGLVSSQTQYLLSALLSDKKFA---QNYIS 147 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i--~~~~~~----~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~ 147 (289)
..+++++++||||++|++|+|+||+ +++++. +.+.+... .....++++.|.++..++.+..+. .++++
T Consensus 246 -~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (409)
T 4eu1_A 246 -MVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELK 324 (409)
T ss_dssp -TSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -hCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4477899999999999999999998 666665 44444433 233446789999999999986421 44578
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
+.++.++++++++.+.|++.| +++..+++|+++|++++ .+++..+++++||.+.|+
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ll~~~gv~v~p~--------- 384 (409)
T 4eu1_A 325 QMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT-----------REQVELLRSEYHIYMTLN--------- 384 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC-----------HHHHHHHHHHHCEECCTT---------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCC-----------HHHHHHHHHcCCEEEcCC---------
Confidence 889999999999999999986 78888999999997654 236777888889999985
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.||+++..++++++.++++|++++
T Consensus 385 -~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 -GRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp -CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred -CEEEEEecCHhhHHHHHHHHHHHh
Confidence 399997778888999999998765
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=225.57 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=176.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc--CCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++. +++++|++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+ .+....+......
T Consensus 146 l~~~l~--~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-------- 214 (365)
T 3get_A 146 LYETHK--DEIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIK-------- 214 (365)
T ss_dssp HHHHTT--TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH--------
T ss_pred HHHHhC--CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhc--------
Confidence 344444 5799999999999999999999999999988 57999999999998764 4444445544433
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
..+++++++|+||.+|++|+|+||+++ ++.+.+.+......+..|++.+.++..+++.. +++++.++.+++++++
T Consensus 215 ~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~ 289 (365)
T 3get_A 215 EFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDD----EFTEKTLENNFSQMEL 289 (365)
T ss_dssp HCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999 55666666655555558899999999999963 5678889999999999
Q ss_pred HHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHH
Q 044773 160 LVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239 (289)
Q Consensus 160 l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~ 239 (289)
+.+.|+++|+++.++.++ ++|++++.. + ..++...|. ++||.+.||..|+ ++++||+++ +++++++
T Consensus 290 l~~~l~~~g~~~~~~~~~-~~~~~~~~~-~------~~~~~~~l~-~~gi~v~~g~~~~---~~~iRis~~--~~~~i~~ 355 (365)
T 3get_A 290 YKEFAKKHNIKIIDSYTN-FITYFFDEK-N------STDLSEKLL-KKGIIIRNLKSYG---LNAIRITIG--TSYENEK 355 (365)
T ss_dssp HHHHHHHTTCEECCCSSS-EEEEECSSS-C------HHHHHHHHH-TTTEECEECGGGT---CSEEEEECC--CHHHHHH
T ss_pred HHHHHHhCCCEECCCCCe-EEEEECCCC-C------HHHHHHHHH-HCCEEEEECccCC---CCEEEEEcC--CHHHHHH
Confidence 999999989888776665 588998753 1 245777776 5699999999887 689999997 6899999
Q ss_pred HHHHHHHHH
Q 044773 240 SMQRLKAFV 248 (289)
Q Consensus 240 ~l~~l~~~l 248 (289)
++++|++++
T Consensus 356 l~~~l~~~l 364 (365)
T 3get_A 356 FFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-32 Score=249.61 Aligned_cols=223 Identities=18% Similarity=0.209 Sum_probs=181.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.+ +..+++++++|
T Consensus 163 ~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-------~~~~~~i~~~s 235 (392)
T 3b1d_A 163 NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSP-------DFKDFALVLSS 235 (392)
Confidence 36889999999999999999999999999999999999999999998776655555555422 12578899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
|||.+|++|+|+||++++++.+.+.+...... ..++++.|.++.++++.. .+++++.++.++++++.+.+.|++
T Consensus 236 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~ 312 (392)
T 3b1d_A 236 ATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQ 312 (392)
Confidence 99999999999999999766555555444322 235778888888888753 456888899999999999999987
Q ss_pred -c-CCceecCCceEEEEEecCcc-ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 044773 167 -A-GISCLKSNAGLFCWVDMRHL-LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243 (289)
Q Consensus 167 -~-g~~~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~ 243 (289)
+ ++.+.++.+++++|++++.. .+ ..+++..|++++||.+.||..|+..+++++||+++. +++++++++++
T Consensus 313 ~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~ 385 (392)
T 3b1d_A 313 EAPRLKVMKPQGTYLIWLDFSDYGLT------DDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKR 385 (392)
Confidence 4 88888999999999988752 12 235777777678999999999986667899999985 78999999999
Q ss_pred HHHHHH
Q 044773 244 LKAFVD 249 (289)
Q Consensus 244 l~~~l~ 249 (289)
|+++++
T Consensus 386 l~~~l~ 391 (392)
T 3b1d_A 386 IVCCLP 391 (392)
Confidence 988765
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-29 Score=220.85 Aligned_cols=219 Identities=19% Similarity=0.230 Sum_probs=177.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.+++++++|++++|+||||.+++.+++++|+++| ++|+++|+|++|.++.+++.. .+.....+ ..
T Consensus 132 l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~-~~~~~~~~--------~~ 201 (354)
T 3ly1_A 132 LKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRF-RSISPMIT--------QG 201 (354)
T ss_dssp HHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTC-CCSHHHHH--------TT
T ss_pred HHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccccc-CCHHHHhh--------hc
Confidence 455666545899999999999999999999999999998 799999999999987665543 34444433 33
Q ss_pred -CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 -NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 -~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+++++++|+||.+|++|+|+||+++ ++.+.+.+......+..|++.+.++..+++.. +++++.++.++++++++
T Consensus 202 ~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l 276 (354)
T 3ly1_A 202 AENIILLKTFSKIHAMAGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDS----AFITYSKKSNDVSRQIL 276 (354)
T ss_dssp CSSEEEEEESSSTTCCGGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeChhhccChhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999 45666666666555668899999999999864 55788889999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|+++|+.+.++.+ .++|++++. + ..++...|. ++||.+. |.+++ .++++||+++ ++++++++
T Consensus 277 ~~~l~~~~~~~~~~~~-~~~~~~~~~--~------~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~ 341 (354)
T 3ly1_A 277 LKALEDLKLPYLPSEG-NFVFHQLVV--P------LKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWV 341 (354)
T ss_dssp HHHHHHHTCCBCCCCS-SEEEEECSS--C------HHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHH
T ss_pred HHHHHHCCCeECCCCc-eEEEEECCC--C------HHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHH
Confidence 9999988888776554 568899875 1 245777776 6799998 76554 4789999997 68999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|++++++
T Consensus 342 ~~~l~~~l~~ 351 (354)
T 3ly1_A 342 ADTMREFRKK 351 (354)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=230.97 Aligned_cols=218 Identities=17% Similarity=0.241 Sum_probs=171.9
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d 79 (289)
+++++++. ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+..
T Consensus 185 l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-------- 256 (420)
T 4f4e_A 185 MLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA-------- 256 (420)
T ss_dssp HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH--------
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh--------
Confidence 45555543 4678999999999999999999999999999999999999999999877642 2334444432
Q ss_pred CCCceEEEecCccccCCCCceEEEEEe--cCHHHHHH----HHhc--cccCCCChHHHHHHHHHhCCchH---HHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYS--NDDTVVAA----ATKM--SSFGLVSSQTQYLLSALLSDKKF---AQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~--~~~~~~~~----~~~~--~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~ 148 (289)
..+++++++||||.+|++|+|+||+++ +++.+.+. +... ..+..++.+.|.+++.++....+ +.+++++
T Consensus 257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 457899999999999999999999964 44443322 2222 23444678999999999988652 1566889
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 149 NKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
.++.++++++.+.+.|+++ |+.+..+++|+|+|++++. +.+..+++++||.+.|+
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~---------- 395 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVST---------- 395 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCC----------
Confidence 9999999999999999987 6888889999999987742 34556667889999985
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
.||+++..+++++++++++|++++
T Consensus 396 ~Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 396 GRICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHHHh
Confidence 299998667888999999998875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=222.08 Aligned_cols=214 Identities=17% Similarity=0.263 Sum_probs=169.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. +...... ..++++++.|
T Consensus 145 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~--------~~~~~i~~~s 213 (364)
T 1lc5_A 145 PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET---GFIPALK--------DNPHIWVLRS 213 (364)
T ss_dssp TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC---CSGGGCT--------TCTTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc---chhhHhc--------cCCCEEEEEE
Confidence 5789999999999999999999999999999999999999999998765422 2222222 3477899999
Q ss_pred CccccCCCCceEEEEE-ecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIY-SNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
+||.+|++|+|+||++ + ++.+.+.+......+..|++.+.++..+++.. +++++.++.++++++++.+.|+++
T Consensus 214 ~sK~~~~~G~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~ 288 (364)
T 1lc5_A 214 LTKFYAIPGLRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFYQALCQLP 288 (364)
T ss_dssp STTTTTCTTTCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CchhhcCCccceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 7 45555555555445558889999999999873 457888899999999999999987
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++.++. |.|+|++++.. . .++...|+ ++||.+.||..|+..+++++||+++ ++++++++++.|+++
T Consensus 289 ~~~~~~~~-g~~~~~~~~~~--~------~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 289 LLTVYPGR-ANYLLLRCERE--D------IDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNV 356 (364)
T ss_dssp TEEECCCS-SSEEEEEESCT--T------CCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCEECCCC-CeEEEEECCCc--H------HHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHH
Confidence 78776555 45678887642 1 23677776 5699999999987555789999997 478889999988887
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
+++.
T Consensus 357 ~~~~ 360 (364)
T 1lc5_A 357 LTGI 360 (364)
T ss_dssp C---
T ss_pred hhcc
Confidence 7654
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=226.55 Aligned_cols=222 Identities=20% Similarity=0.312 Sum_probs=173.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++++||||||.+++.+++++|+++|+++|+++|+||+|+.+ +.+..... ... +..+++++++
T Consensus 204 ~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~---~~~-------~~~~~~i~~~ 272 (444)
T 3if2_A 204 EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSD---AHL-------NWDNNTILCF 272 (444)
T ss_dssp TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSC---CCC-------CCCTTEEEEE
T ss_pred CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc-cccccccc---ccc-------cCCCCEEEEe
Confidence 568999999999999999999999999999999999999999999753 21111111 101 2357899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKFAQNYISE-NKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 165 (289)
||||. +++|+|+||++++ +.+.+.+..... .+..+++.|.++..++....+ ..+.++ .++.++++++.+.+.|.
T Consensus 273 S~sK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 349 (444)
T 3if2_A 273 SLSKI-GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQLSDNEIKPFYQKQATLAVKLLK 349 (444)
T ss_dssp ESTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred chhhc-cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 6799999999995 445444443322 234788999999999998876 555555 78889999999998887
Q ss_pred hc----CCceecCCceEEEEEecCc-cccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC--------CCeEEEEEecC
Q 044773 166 KA----GISCLKSNAGLFCWVDMRH-LLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--------PGWFRVCFANM 232 (289)
Q Consensus 166 ~~----g~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--------~~~~Ris~~~~ 232 (289)
+. ++.+..+.+|+++|++++. ..+ ..+++..| .++||.+.||..|+... ++++||+++.
T Consensus 350 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~- 421 (444)
T 3if2_A 350 QALGDYPLMIHKPEGAIFLWLWFKDLPIS------TLDLYERL-KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA- 421 (444)
T ss_dssp HHSSSSSEEEECCCBSSEEEEEETTCSSC------HHHHHHHH-HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-
T ss_pred HhcccCCceEecCCccEEEEEEcCCCCCC------HHHHHHHH-HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-
Confidence 64 4677788999999999875 222 24577766 47799999999986421 2689999997
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~ 252 (289)
+++++++++++|++++++..
T Consensus 422 ~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 422 DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=220.83 Aligned_cols=206 Identities=18% Similarity=0.290 Sum_probs=164.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++||||||.+++.+++++|+++|+ +++++|+||+|.++.. ..++..+.. ..++++++.||
T Consensus 146 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~----~~~~~~~~~--------~~~~~i~~~s~ 212 (356)
T 1fg7_A 146 GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP----QASLAGWLA--------EYPHLAILRTL 212 (356)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG----GGCSGGGTT--------TCTTEEEEEES
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC----CCcHHHHHh--------hCCCEEEEecc
Confidence 6899999999999999999999999999999 9999999999997631 123333322 34778999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG-I 169 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~ 169 (289)
||.+|++|+|+||++++ +.+.+.+......+++|++.|.++.+++++..+ +++++.++.++++++++.+.|++++ +
T Consensus 213 sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~ 289 (356)
T 1fg7_A 213 SKAFALAGLRCGFTLAN-EEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCV 289 (356)
T ss_dssp SSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred hHhhcCchhhhEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999995 555666655544446888999999999986443 2578889999999999999999885 2
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-CCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-GSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
....+.+|+|+|++++ + ..++...| .++||.+.| |..|+. ++++||+++ +++++++++++|++
T Consensus 290 ~~~~~~~~~~~~~~~~---~------~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 290 EQVFDSETNYILARFK---A------SSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREESQRVIDALRA 353 (356)
T ss_dssp EEECCCSSSEEEEEET---T------HHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHHHHHHHHHHT
T ss_pred eEECCCCCeEEEEECC---C------HHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHHHHHHHHHHh
Confidence 2334556788899886 1 24577777 578999999 887774 469999997 47899999998865
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=225.92 Aligned_cols=217 Identities=16% Similarity=0.234 Sum_probs=170.5
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.++ ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ....++..+..
T Consensus 163 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-------- 234 (397)
T 3fsl_A 163 LLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS-------- 234 (397)
T ss_dssp HHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH--------
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh--------
Confidence 45555543 467888999999999999999999999999999999999999999887653 22334444432
Q ss_pred CCCceEEEecCccccCCCCceEEEEEe--cCHHHHH-HHHhc-----cccCCCChHHHHHHHHHhCCchH---HHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYS--NDDTVVA-AATKM-----SSFGLVSSQTQYLLSALLSDKKF---AQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~--~~~~~~~-~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~ 148 (289)
..+++++++||||.+|++|+|+||+++ ++..+.. ..... ..+..++.+.|.+++.++....+ ..+++++
T Consensus 235 ~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 314 (397)
T 3fsl_A 235 AGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEE 314 (397)
T ss_dssp TTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 457899999999999999999999985 3444333 22221 23444677999999999997643 1566888
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 149 NKKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
.++.++++++++.+.|++. |+.+..+++|+|+|++++. +.+..+++++||.+.||.
T Consensus 315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~--------- 374 (397)
T 3fsl_A 315 MRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG--------- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC---------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC---------
Confidence 9999999999999999987 6888888999999987742 245566778899999873
Q ss_pred EEEEEecCCHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
||+++..+++++++++++|+++
T Consensus 375 -Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 375 -RMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHH
T ss_pred -eEEEEecCHhhHHHHHHHHHhh
Confidence 9999866778899999999875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=227.41 Aligned_cols=216 Identities=17% Similarity=0.244 Sum_probs=167.3
Q ss_pred HHhhh-CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccCCC
Q 044773 4 LAQKR-HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 4 ~~~~~-~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~d~ 80 (289)
+.+++ .++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+.. .
T Consensus 167 ~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~--------~ 238 (401)
T 7aat_A 167 EDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE--------Q 238 (401)
T ss_dssp HHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH--------T
T ss_pred HHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh--------c
Confidence 34443 35788999999999999999999999999999999999999999998866543 1223333322 4
Q ss_pred CCceEEEecCccccCCCCceEEEEEe--cCHH----HHHHHHhc--cccCCCChHHHHHHHHHhCCchHH---HHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYS--NDDT----VVAAATKM--SSFGLVSSQTQYLLSALLSDKKFA---QNYISEN 149 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~--~~~~----~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~~~ 149 (289)
.+++++++||||.+|++|+|+||+++ .++. +...+... .....++.+.|.+++.++.++.+. .+++++.
T Consensus 239 ~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (401)
T 7aat_A 239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGM 318 (401)
T ss_dssp TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999987 2333 23333322 223346678888888888876431 4567888
Q ss_pred HHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 150 KKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
+++++++++++.+.|++++ +++..|++|+|+|++++ .+.+..+++++||.+.|+ +
T Consensus 319 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ll~~~gi~v~~~----------~ 377 (401)
T 7aat_A 319 ADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKD----------G 377 (401)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTT----------C
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-----------HHHHHHHHHhCCEeccCC----------C
Confidence 9999999999999999875 77778999999998764 235577778889999864 5
Q ss_pred EEEEecCCHHHHHHHHHHHHHHH
Q 044773 226 RVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 226 Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
||+++..++++++.++++|++++
T Consensus 378 Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 378 RISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred eEEeccCChhhHHHHHHHHHHHh
Confidence 99997667777999999998875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=226.77 Aligned_cols=220 Identities=16% Similarity=0.218 Sum_probs=171.9
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC--CCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS--PGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (289)
+++++... ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ....++..+..
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~------- 245 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS------- 245 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-------
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc-------
Confidence 44555543 357788899999999999999999999999999999999999999886654 12233443321
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEe---cCHH---HHHHHHh-c-cccCCCChHHHHHHHHHhCCchHH---HHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYS---NDDT---VVAAATK-M-SSFGLVSSQTQYLLSALLSDKKFA---QNYIS 147 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~---~~~~---~~~~~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~ 147 (289)
..++++++.||||.+|.+|+|+||+++ +++. +...+.. . ..+..++++.|.++..+++...+. .++++
T Consensus 246 -~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 324 (412)
T 1ajs_A 246 -EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVK 324 (412)
T ss_dssp -TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred -cCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence 347889999999999977999999999 5442 3333333 1 233436889999999999886421 45788
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
+.+++++++++++.+.|++++ +++..+.+|+++|++++ .+++..+++++||.+.|+
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gv~v~~~--------- 384 (412)
T 1ajs_A 325 TMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------PKQVEYLINQKHIYLLPS--------- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHTTCEECCTT---------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------HHHHHHHHHhCCEEecCC---------
Confidence 899999999999999999886 78788889999998664 135666777889999974
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+||+++..+++++++++++|++++++
T Consensus 385 -~Ris~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 385 -GRINMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp -SEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred -cEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 59999855899999999999998864
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=216.25 Aligned_cols=208 Identities=16% Similarity=0.226 Sum_probs=170.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++.+++.+|++.|++ |+++|+|++|+++.+ +.. .+..... +..+++++++|
T Consensus 154 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~-~~~~~~~--------~~~~~~i~~~s 222 (363)
T 3ffh_A 154 EKTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQP-EKHEKLV--------RTYKNLIITRT 222 (363)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCC-CCCGGGG--------GTCTTEEEEEE
T ss_pred cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccc-cCHHHHh--------hcCCCEEEEee
Confidence 479999999999999999999888888888877 999999999998766 332 2333332 24578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK-AG 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g 168 (289)
+||.+|++|+|+||+++ ++.+.+.+......+..|++.+.++..+++.. +++++.++.++++++++.+.|++ .|
T Consensus 223 ~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~g 297 (363)
T 3ffh_A 223 FSKIYGLASARVGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNANGIKQYEAFAKRFEK 297 (363)
T ss_dssp SSSTTCCSSCCCEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred chhhhcCchhceeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999 55666666665555668889999999999863 55788889999999999999999 58
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
+++.++.+ .|+|++++. + ..++...|. ++||.+.||..|+. ++++||+++ ++++++.++++|+++
T Consensus 298 ~~~~~~~~-~~~~~~~~~--~------~~~~~~~l~-~~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 298 VKLYPANG-NFVLIDLGI--E------AGTIFSYLE-KNGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKL 362 (363)
T ss_dssp CEECCCCS-SEEEEECSS--C------HHHHHHHHH-HTTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred ceECCCCC-eEEEEECCC--C------HHHHHHHHH-HCCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHh
Confidence 88876665 568898874 1 245777776 56999999999875 689999997 789999999999875
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=224.86 Aligned_cols=218 Identities=16% Similarity=0.191 Sum_probs=165.9
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..++++++++++||||||.+++.+++++|+++|+++++++|+|++|.++.+++............ +..++++++
T Consensus 187 ~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~------~~~~~~i~~ 260 (420)
T 4h51_A 187 APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFA------RRGIEVLLA 260 (420)
T ss_dssp SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH------HTTCCCEEE
T ss_pred cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHH------hhCceEEEE
Confidence 44567788888899999999999999999999999999999999999987754332222211110 245788999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHH------HHh--ccccCCCChHHHHHHHHHhCCchHH---HHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAA------ATK--MSSFGLVSSQTQYLLSALLSDKKFA---QNYISENKKRLKQR 156 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~------~~~--~~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 156 (289)
.||||.|+++|+|+||++++.+..... +.. ...+++++...|.+++.++.+..+. .++++.+++.++++
T Consensus 261 ~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~ 340 (420)
T 4h51_A 261 QSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTM 340 (420)
T ss_dssp EECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865433221 111 1334557779999999999986532 55677888999999
Q ss_pred HHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 157 HRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 157 ~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
++.+.+.|+++| |....+++|+|.|+.++. +.++ +++++||++.|+. |||++.+
T Consensus 341 R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~-~L~e~~Vy~~~~g----------Ris~Agl 398 (420)
T 4h51_A 341 RRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCE-YCQNHNIFITVSG----------RANMAGL 398 (420)
T ss_dssp HHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHH-HHHHTTEECCTTC----------EEEGGGC
T ss_pred HHHHHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHH-HHHhCCEEEcCCC----------EEEeccC
Confidence 999999999885 555678889999976642 2344 4568899998752 9999878
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++++.+.++|.+++++..+
T Consensus 399 ~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 399 THETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999877543
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=227.54 Aligned_cols=221 Identities=17% Similarity=0.257 Sum_probs=173.2
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC--CccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP--GFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (289)
++++++.. ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+..
T Consensus 192 l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~------- 264 (448)
T 3meb_A 192 TKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD------- 264 (448)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH-------
T ss_pred HHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh-------
Confidence 45555543 2577889999999999999999999999999999999999999998866541 1223333322
Q ss_pred CCCCceEEEecCccccCCCCceEEEE--Ee--------cCH----HHHHHHHhc--cccCCCChHHHHHHHHHhCCchHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAI--YS--------NDD----TVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFA 142 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i--~~--------~~~----~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~ 142 (289)
..+++++++||||.+|++|+|+||+ ++ +++ .+...+... ..+..++.+.|.++..++.+..+.
T Consensus 265 -~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~ 343 (448)
T 3meb_A 265 -AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLL 343 (448)
T ss_dssp -TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHH
T ss_pred -cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHH
Confidence 3478899999999999999999998 77 554 344444332 333446779999999999986531
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhc---C------CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE
Q 044773 143 ---QNYISENKKRLKQRHRKLVSGLEKA---G------ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN 210 (289)
Q Consensus 143 ---~~~~~~~~~~~~~~~~~l~~~l~~~---g------~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 210 (289)
.+++++.+++++++++++.+.|+++ + +.+..+++|+|+|+.++ .+++..+++++||.
T Consensus 344 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gV~ 412 (448)
T 3meb_A 344 QMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-----------PEHVDYLKEKWSIY 412 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-----------HHHHHHHHHhCCEE
Confidence 3557889999999999999999987 3 56677899999998774 24677788889999
Q ss_pred EeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 211 ISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 211 v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+.||+ .||+++..+++++++++++|+++++.
T Consensus 413 v~~G~---------gRis~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 413 LVKAG---------GRMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp ECSGG---------GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EeCCC---------cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99975 29999866788899999999999873
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=216.96 Aligned_cols=215 Identities=17% Similarity=0.246 Sum_probs=173.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+ ++++|++++||||||.+++.+++++|+++|+++ |+++|+||+|.++... .... .. +
T Consensus 149 l~~~l~~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~--~~~~---~~--------~ 214 (367)
T 3euc_A 149 MLAAMAEH-QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQE--SWMS---RL--------T 214 (367)
T ss_dssp HHHHHHHH-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSC--CSGG---GG--------G
T ss_pred HHHHhhcc-CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhccc--chHH---HH--------h
Confidence 45555543 689999999999999999999999999999999 9999999999986422 1111 11 2
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
..++++++.||||. +++|+|+||++++ +.+.+.+......+..|++.+.++..+++. .+++++.++++++++++
T Consensus 215 ~~~~~i~~~s~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~ 288 (367)
T 3euc_A 215 DFGNLLVMRTVSKL-GLAGIRLGYVAGD-PQWLEQLDKVRPPYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSR 288 (367)
T ss_dssp TCTTEEEEEECCCT-TSCSCCEEEEEEC-HHHHHHHGGGCCSSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEecchhh-cccccCceeeeeC-HHHHHHHHHhCCCCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHH
Confidence 45788999999999 8899999999994 556666666555556889999999999987 44578888999999999
Q ss_pred HHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHH
Q 044773 160 LVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLK 238 (289)
Q Consensus 160 l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~ 238 (289)
+.+.|+++ |+++.+ .+|.++|++++ + ..++...| .++||.+.||..|+...++++||+++ ++++++
T Consensus 289 l~~~l~~~~g~~~~~-~~~~~~~~~~~---~------~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~ 355 (367)
T 3euc_A 289 VAEGMAAHGGVTVFP-SAANFLLARVP---D------AAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS--TPEENA 355 (367)
T ss_dssp HHHHHHTSTTCEECC-CSSSEEEEECS---C------HHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC--CHHHHH
T ss_pred HHHHHHhCCCcEECC-CCCeEEEEECC---C------HHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC--CHHHHH
Confidence 99999998 888554 45568888886 1 13566665 57799999999887666789999997 789999
Q ss_pred HHHHHHHHHHH
Q 044773 239 LSMQRLKAFVD 249 (289)
Q Consensus 239 ~~l~~l~~~l~ 249 (289)
+++++|+++++
T Consensus 356 ~~~~~l~~~l~ 366 (367)
T 3euc_A 356 QFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988753
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=224.32 Aligned_cols=220 Identities=17% Similarity=0.233 Sum_probs=168.2
Q ss_pred hHHHhhhCCC-ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC--CCccChhhhhhccccccC
Q 044773 2 YQLAQKRHLK-VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS--PGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~~-~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (289)
+++++...++ ..++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ....++..+..
T Consensus 166 l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~------- 238 (412)
T 1yaa_A 166 FLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVE------- 238 (412)
T ss_dssp HHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHH-------
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHh-------
Confidence 4555555433 3444559999999999999999999999999999999999999876654 12223333322
Q ss_pred CCCC---ceEEEecCccccCCCCceEEEEE--e----cCHH----HHHHHHhc--cccCCCChHHHHHHHHHhCCchHH-
Q 044773 79 EVWN---RVHIVYSLSKDLGLPGFRVGAIY--S----NDDT----VVAAATKM--SSFGLVSSQTQYLLSALLSDKKFA- 142 (289)
Q Consensus 79 d~~~---~~i~i~s~sK~~g~~G~r~G~i~--~----~~~~----~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~- 142 (289)
..+ ++++++|+||.+|.+|+|+||++ + +++. +.+.+... ..+..++++.|.++..+++...+.
T Consensus 239 -~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 317 (412)
T 1yaa_A 239 -KLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTE 317 (412)
T ss_dssp -HTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHH
T ss_pred -cCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHH
Confidence 123 78999999999997799999998 7 1343 44444432 233445789999999999886421
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 143 --QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 143 --~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
.+++++.++.++++++++.+.|++++ +++..+++|+++|+.++. +.+..+++++||.+.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~--- 383 (412)
T 1yaa_A 318 QWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVA--- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCH-----------HHHHHHHHhCCEEecc---
Confidence 46788999999999999999999886 888889999999976531 2346677788999987
Q ss_pred CCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 217 f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
++||+++.++++++++++++|+++++.
T Consensus 384 -------~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 384 -------SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp -------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred -------CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 469999866899999999999998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=224.63 Aligned_cols=216 Identities=16% Similarity=0.208 Sum_probs=167.1
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCC-CCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS-PGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ....++..+..
T Consensus 162 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-------- 233 (396)
T 2q7w_A 162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA-------- 233 (396)
T ss_dssp HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH--------
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHh--------
Confidence 44555543 246788889999999999999999999999999999999999999876643 12223333321
Q ss_pred CCCceEEEecCccccCCCCceEEEEEe--cCH----HHHHHHHhc--cccCCCChHHHHHHHHHhCCc----hHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYS--NDD----TVVAAATKM--SSFGLVSSQTQYLLSALLSDK----KFAQNYIS 147 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~--~~~----~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~ 147 (289)
..+++++++|+||.+|++|+|+||+++ +++ .+.+.+... ..+..++++.|.++..+++.. .+ .++++
T Consensus 234 ~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~ 312 (396)
T 2q7w_A 234 MHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELT 312 (396)
T ss_dssp HCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHH
T ss_pred cCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHH
Confidence 236889999999999999999999997 333 333333321 234445889999999999886 33 56788
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 148 ENKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
+.++.++++++++.+.|++.+ +++..+.+|+++|++++. +.+..+++++||.+.||
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~--------- 372 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS--------- 372 (396)
T ss_dssp HC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT---------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC---------
Confidence 899999999999999999986 788888999999987642 24556667889999874
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
+||+++..+++++++++++|+++
T Consensus 373 -~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 373 -GRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp -CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred -ceEEEeecCHHHHHHHHHHHHhc
Confidence 59999856899999999999875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=216.05 Aligned_cols=215 Identities=18% Similarity=0.275 Sum_probs=167.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++.+|++.|.++ ++|+||+|.++.+.+... .... +..+++++++|
T Consensus 128 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~--~~~~---------~~~~~~i~~~S 194 (350)
T 3fkd_A 128 SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR--PADI---------KGRKNLVMVYS 194 (350)
T ss_dssp TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC--GGGG---------TTCSSEEEEEE
T ss_pred CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh--hHHh---------hcCCCEEEEec
Confidence 4789999999999999999988888888887755 999999999876654332 1222 35588899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
|||.+|++|+|+||+++ ++.+.+.+......+..+++.+.++..+++... .+.+..++.. ++++++.+.|+++ |
T Consensus 195 ~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~l~~~L~~~~~ 269 (350)
T 3fkd_A 195 FSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPA---QFTLPIRKWQ-RNTVDFITALNRLDG 269 (350)
T ss_dssp SHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTT---TTCCCHHHHH-HHHHHHHHHHHHSTT
T ss_pred CchhccCcchheEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHH---HHHHHHHHHH-HHHHHHHHHHhcCCC
Confidence 99999999999999999 566677776665566688999999999998754 1233333344 7788899999888 8
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+++.++.+ .|+|+.++.. +..++...|++++||.+.||..|+..+++++||+++ ++++++++++.|++++
T Consensus 270 ~~~~~~~~-~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 270 VEVHPSGT-TFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFL 339 (350)
T ss_dssp EEECCCSS-SEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred cEECCCCC-cEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHH
Confidence 88766655 5667887753 225688888865899999999998777899999997 5788888888888877
Q ss_pred HHHH
Q 044773 249 DSIT 252 (289)
Q Consensus 249 ~~~~ 252 (289)
++..
T Consensus 340 ~~~~ 343 (350)
T 3fkd_A 340 EKYE 343 (350)
T ss_dssp TC--
T ss_pred HHhc
Confidence 6543
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=219.98 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=164.7
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCC-CccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP-GFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~d 79 (289)
+++++... ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+..
T Consensus 159 l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-------- 230 (394)
T 2ay1_A 159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS-------- 230 (394)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH--------
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh--------
Confidence 45555544 2356777899999999999999999999999999999999999998765421 1123332321
Q ss_pred CCCceEEEecCccccCCCCceEEEEEe--cCHHH----HHHHHh--ccccCCCChHHHHHHHHHhCCch---HHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYS--NDDTV----VAAATK--MSSFGLVSSQTQYLLSALLSDKK---FAQNYISE 148 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~--~~~~~----~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~ 148 (289)
..+++++++|+||.+|++|+|+||+++ +++.+ ...+.. ...+..++++.|.++..+++... .+.++.++
T Consensus 231 ~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~ 310 (394)
T 2ay1_A 231 RIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEA 310 (394)
T ss_dssp HCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 235789999999999999999999998 44433 222221 12344458899999999998762 11567888
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 149 NKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
.+++++++++++.+.|++++ +++..+.+|+++|++++. +.+..+++++||.+.||
T Consensus 311 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~---------- 369 (394)
T 2ay1_A 311 VRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD---------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------
Confidence 99999999999999998874 777788889999987642 23455666889999874
Q ss_pred EEEEEecCCHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
+||+++.++++++++++++|+++
T Consensus 370 ~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 370 SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred CeEEeecCCHhhHHHHHHHHHHc
Confidence 59999866899999999999875
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=222.55 Aligned_cols=208 Identities=21% Similarity=0.249 Sum_probs=155.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++ +|++.++.++++||+||+|.. +. ..++.. ..+++++++|
T Consensus 156 ~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~-~~~l~~-----------~~~~~i~~~S 214 (391)
T 3bwn_A 156 KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PH-YTPITR-----------RQDHDIMLFT 214 (391)
T ss_dssp CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----TT-TSCCCC-----------CBCCSEEEEE
T ss_pred CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----CC-CCcccc-----------CCCCeEEEEe
Confidence 47899999999999999997 354422223399999999973 11 112111 2368899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc--cCCCChHHHHHHHHHhCCchH-------HHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--FGLVSSQTQYLLSALLSDKKF-------AQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l 160 (289)
|||.+|++|+|+||++++++.+.+.+..... ..+++++.|.++..+++++.. .++++++.++.++++++.+
T Consensus 215 ~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (391)
T 3bwn_A 215 FSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKL 294 (391)
T ss_dssp HHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999845555555554433 355788999999999986531 1457889999999999999
Q ss_pred HHHHHhc-CCceecC-------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 161 VSGLEKA-GISCLKS-------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 161 ~~~l~~~-g~~~~~~-------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.+.|+++ ++++..| .+|+|+|++++.. . .+..+++++||.+.||..|+. +++++|
T Consensus 295 ~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--~--------~~~~~l~~~gV~v~pg~~fg~-~~~~iR 363 (391)
T 3bwn_A 295 REVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--T--------DLVSELRRHKVMSRAGERCGS-DKKHVR 363 (391)
T ss_dssp HHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS--C--------CHHHHHHHTTEECEEGGGGTC-CTTEEE
T ss_pred HHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH--H--------HHHHHHHHCCEEEccCCCCCC-CCCEEE
Confidence 9999987 5655443 4456899998741 1 344456688999999999975 568999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
|+++. +++++++++++|++++++
T Consensus 364 is~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 364 VSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp EESCS-CHHHHHHHHHHHHSCC--
T ss_pred EEecC-CHHHHHHHHHHHHHHHHh
Confidence 99996 899999999999887654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=203.22 Aligned_cols=202 Identities=19% Similarity=0.265 Sum_probs=152.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.+++++++++||||||.+++.+ ++.++|+++++ +|+||+|+++...+.... +..+++++++|
T Consensus 134 ~~~~~v~i~~p~nptG~~~~~~---~l~~l~~~~~~-~ivDea~~~~~~~~~~~~--------------~~~~~~i~~~S 195 (337)
T 3p1t_A 134 SRDDCVVLANPSNPTGQALSAG---ELDQLRQRAGK-LLIDETYVDYSSFRARGL--------------AYGENELVFRS 195 (337)
T ss_dssp CTTEEEEEESSCTTTCCCCCHH---HHHHHHHHCSE-EEEECTTGGGSSCSSSCC--------------CCBTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCCCCHH---HHHHHHHhCCc-EEEECCChhhcccccccc--------------ccCCCEEEEee
Confidence 5789999999999999999955 45555677776 566999997543322111 13467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
+||.+|++|+|+||++++ +.+.+.+......+..+++.+.++..+++.... ..+..+.+.++++++.+.|+++|+
T Consensus 196 ~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~ 270 (337)
T 3p1t_A 196 FSKSYGLAGLRLGALFGP-SELIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGY 270 (337)
T ss_dssp SSSTTCCTTTCCEEEECC-HHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhccCcchheEEEEeC-HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999995 455556665555566888999999999987533 445555667778899999999899
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
++.++.+++ +|+..+. . .++.. +++++||.+.||..|+. ++++||+++ ++++++.+++.|+++.+
T Consensus 271 ~~~~~~~~~-~~~~~~~---~------~~~~~-~l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 271 RVASSEANF-VLVENAA---G------ERTLR-FLRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CBCCCSSSE-EEEECTT---T------HHHHH-HHHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred EECCCCCeE-EEEEcCC---H------HHHHH-HHHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 888887765 4455542 1 23444 45578999999999875 679999998 58999999999887653
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=203.30 Aligned_cols=209 Identities=19% Similarity=0.290 Sum_probs=161.6
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++|+||||.+++ +++|.++|+++|+++|+||+|.++ .+.. ...... ..+++++++|+
T Consensus 149 ~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~~~~li~De~~~~~--~~~~---~~~~~~--------~~~~~i~~~s~ 212 (360)
T 3hdo_A 149 EGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVLDETYAEF--AESN---ALELVR--------RHENVVVTRTL 212 (360)
T ss_dssp CSSEEEEESSCTTTCCCCC---HHHHHHHHHHBSSEEEEECTTGGG--SSCC---CTHHHH--------HCSSEEEEEES
T ss_pred CCCEEEEeCCCCCCCCCcC---HHHHHHHHHHCCCEEEEECChHhh--CCcc---hhHHhc--------cCCCEEEEecc
Confidence 5789999999999999999 556667778999999999999974 3332 222222 34788999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGIS 170 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 170 (289)
||.+|++|+|+||+++ ++.+.+.+......+..|++.+.++..+++.. +++++.++.++++++++.+.|+++|+.
T Consensus 213 sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~ 287 (360)
T 3hdo_A 213 SKSYSLAGMRIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQ----AYLSECCRRIRETREWFTTELRSIGYD 287 (360)
T ss_dssp TTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hHhhcCCccceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 9999999999999999 55666666655555568899999999999873 457888899999999999999988888
Q ss_pred eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 171 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+.++.+ .++|+.++.. +..++...|. ++||.+.|+..+ ..++++||+++ +++++++++++|+++-+.
T Consensus 288 ~~~~~~-~~~~~~~~~~-------~~~~l~~~l~-~~gi~v~~~~~~--~~~~~iRis~~--~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 288 VIPSQG-NYLFATPPDR-------DGKRVYDGLY-ARKVLVRHFSDP--LLAHGMRISIG--TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp ECCCSS-SEEEEECTTC-------CHHHHHHHHH-HTTEECBCCCST--TTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred EcCCCc-cEEEEECCCC-------CHHHHHHHHH-HCCEEEEECCCC--CCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence 776655 5677776632 1245676665 679999998762 34689999997 689999999999887665
Q ss_pred HHH
Q 044773 251 ITT 253 (289)
Q Consensus 251 ~~~ 253 (289)
.++
T Consensus 355 ~~~ 357 (360)
T 3hdo_A 355 HHH 357 (360)
T ss_dssp ---
T ss_pred ccc
Confidence 543
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=203.85 Aligned_cols=198 Identities=20% Similarity=0.303 Sum_probs=154.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++||||||.+++.+++++|+++| + ++|+||+|+++.. + +...... ..+++++++|
T Consensus 137 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~----~~~~~~~--------~~~~~i~~~s 199 (335)
T 1uu1_A 137 GEGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHG-E----SYVDFLK--------KYENLAVIRT 199 (335)
T ss_dssp CTTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHC-C----CCGGGGG--------TCSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcc-h----hHHHHhh--------hCCCEEEEec
Confidence 3689999999999999999988888888776 7 8999999997532 1 2222222 3467899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
+||.+|++|+|+||++++ +.+.+.+......++.|++.|.++..+++.. +++++.++.++++++++.+.|++.|+
T Consensus 200 ~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 274 (335)
T 1uu1_A 200 FSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGY 274 (335)
T ss_dssp STTTTTCGGGCCEEEEEC-HHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhcCCcccCeEEEEeC-HHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999999994 5556555554444568889999999999873 34677888899999999999988888
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
.+.+ .+|+|+|++++. .+..++...|. ++||.+.| .++++||+++. ++++++++++|+++
T Consensus 275 ~~~~-~~~~~~~~~~~~-------~~~~~~~~~l~-~~gi~v~~-------~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 275 RITD-SRGNFVFVFMEK-------EEKERLLEHLR-TKNVAVRS-------FREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp CBCC-CCSSEEEEECCT-------HHHHHHHHHHH-HHTEEEEE-------ETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred EEcC-CCCeEEEEECCC-------CCHHHHHHHHH-HCCEEEEE-------CCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 7654 456788998864 12346777776 56999998 24689999973 67899999988753
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=201.55 Aligned_cols=210 Identities=18% Similarity=0.215 Sum_probs=159.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+++.+++.+| |+.+++++|+||+|+++.++ .+...+.. ..
T Consensus 156 l~~~i~~~-~~~~v~~~~~~nptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~----~~~~~~~~--------~~ 219 (369)
T 3cq5_A 156 ALEEIRAK-QPDIVFVTTPNNPTGDVTSLDDVERI---INVAPGIVIVDEAYAEFSPS----PSATTLLE--------KY 219 (369)
T ss_dssp HHHHHHHH-CCSEEEEESSCTTTCCCCCHHHHHHH---HHHCSSEEEEECTTGGGCCS----CCGGGGTT--------TC
T ss_pred HHHHhhcc-CCCEEEEeCCCCCCCCCCCHHHHHHH---HHhCCCEEEEECCchhhcCC----cchHHHHh--------hC
Confidence 34555542 58999999999999999995555555 55566999999999976432 23333322 33
Q ss_pred C-ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 82 N-RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 82 ~-~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+ ++++++|+||.+|++|+|+||++++++ +.+.+......+..|++.+.++..+++.. +++++.+++++++++++
T Consensus 220 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l 294 (369)
T 3cq5_A 220 PTKLVVSRTMSKAFDFAGGRLGYFVANPA-FIDAVMLVRLPYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERVRV 294 (369)
T ss_dssp TTTEEEEEESSSTTSCGGGCCEEEEECTH-HHHHHHTTSCTTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHHHH
T ss_pred CCCEEEEEechHhcCCcccceEEEEeCHH-HHHHHHHcCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHH
Confidence 5 789999999999989999999999754 45555554444558889999999999863 45778888999999999
Q ss_pred HHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHH
Q 044773 161 VSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~ 240 (289)
.+.|++.|+++.++. |.++|++++. + ..++...|. ++||.+.|| + .++++||+++ ++++++++
T Consensus 295 ~~~L~~~g~~~~~~~-~~~~~~~~~~--~------~~~l~~~l~-~~gi~v~~~---~--~~~~iRis~~--~~~~i~~~ 357 (369)
T 3cq5_A 295 AARLEELGYAVVPSE-SNFVFFGDFS--D------QHAAWQAFL-DRGVLIRDV---G--IAGHLRTTIG--VPEENDAF 357 (369)
T ss_dssp HHHHHHHTCEEECCS-SSEEEEECCS--S------HHHHHHHHH-HTTEECBCC---S--CTTEEEEECC--CHHHHHHH
T ss_pred HHHHHhCCCEECCCC-CeEEEEECCC--C------HHHHHHHHH-HCCEEEEEC---C--CCCeEEEEeC--CHHHHHHH
Confidence 999988888887554 4677888761 1 245777664 779999998 2 2579999998 68999999
Q ss_pred HHHHHHHHH
Q 044773 241 MQRLKAFVD 249 (289)
Q Consensus 241 l~~l~~~l~ 249 (289)
+++|+++++
T Consensus 358 ~~~l~~~~~ 366 (369)
T 3cq5_A 358 LDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-27 Score=214.44 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=158.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|+++|||||||.+++ +.+ + ++..+.|++|.+ ...++..+ ..+++++++|
T Consensus 195 ~~~k~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~------~~~s~~~~----------~~~~~i~~~S 248 (427)
T 2hox_A 195 PEQYIEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW------PHYTPIKY----------KADEDILLFT 248 (427)
T ss_dssp GGGEEEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS------TTTSCCCS----------CBCCSEEEEE
T ss_pred CCceEEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC------CCCCcccc----------CCCceEEEEe
Confidence 36899999999999999999 422 2 567888887752 12232222 1478899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCch-HH-------HHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKK-FA-------QNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~-~~-------~~~~~~~~~~~~~~~~~ 159 (289)
|||.+|++|+|+||++++++.+.+.+...... ..++.+.|.++..+|++.. ++ ++++++.++.+++++++
T Consensus 249 ~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
T 2hox_A 249 MSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN 328 (427)
T ss_dssp HHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred ChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999766666666554432 4578899999999988642 11 45678889999999999
Q ss_pred HHHHHHhc-CCce--------------ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 160 LVSGLEKA-GISC--------------LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 160 l~~~l~~~-g~~~--------------~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
+.+.|++. |+.+ ..|++|+|+|++++.. . .+++..+++++||.+.||..|+. ++++
T Consensus 329 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~--~------~~~~~~ll~~~gI~v~pg~~f~~-~~~~ 399 (427)
T 2hox_A 329 ITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--E------DKDCYQTFQNGRINTQNGVGFEA-SSRY 399 (427)
T ss_dssp HHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--G------GCSHHHHHHHTTEECEEGGGGTS-CTTE
T ss_pred HHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc--H------HHHHHHHHHHCCEEEcCCCccCC-CCCE
Confidence 99999987 5543 3566799999999751 1 23677788788999999999986 6789
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+||+++. +++++++++++|+++++
T Consensus 400 ~Ris~~~-~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 400 VRLSLIK-TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp EEEECSS-CHHHHHHHHHHHHHHHT
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999996 89999999999998864
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=200.23 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=164.5
Q ss_pred hHHHhhhCC--CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL--KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~--~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.... ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.++ ....++.+...
T Consensus 162 l~~~l~~~~~~~~~~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~-------- 229 (398)
T 3a2b_A 162 LRAKLSRLPEDSAKLICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIG-HKGAGTASHFG-------- 229 (398)
T ss_dssp HHHHHHTSCSSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSS-GGGCCHHHHHT--------
T ss_pred HHHHHHhhccCCceEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccC-CCCCchHhhcC--------
Confidence 455565432 6899999999999999998 899999999999999999999876553 21233333321
Q ss_pred CCCc-eEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-c--ccCCCChHHHH-HHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNR-VHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-S--SFGLVSSQTQY-LLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~-~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~--~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
..++ +++++||||.+|.+| ||+++++ .+.+.+... . .....+++.|. ++..+++. .++.++.++.++
T Consensus 230 ~~~~~di~~~s~sK~~~~~G---G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~ 301 (398)
T 3a2b_A 230 LNDDVDLIMGTFSKSLASLG---GFVAGDA-DVIDFLKHNARSVMFSASMTPASVASTLKALEI----IQNEPEHIEKLW 301 (398)
T ss_dssp CGGGCSEEEEESSSTTCSSC---EEEEECH-HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH----HHHCTHHHHHHH
T ss_pred CCcCCeEEEecccccccCCC---cEEEeCH-HHHHHHHHhcccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHH
Confidence 2234 699999999999778 9999964 444444432 1 22234555665 45566654 234667889999
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEec-C
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-M 232 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~-~ 232 (289)
++++++.+.|++.|+++.++. |+++|+.++.. .+..++...|+++ ||.+.||..|+.. +++++||+++. +
T Consensus 302 ~~~~~l~~~L~~~g~~~~~~~-g~~~~~~~~~~------~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~ 373 (398)
T 3a2b_A 302 KNTDYAKAQLLDHGFDLGATE-SPILPIFIRSN------EKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATH 373 (398)
T ss_dssp HHHHHHHHHHHHTTCCBCSCC-SSEEEEECCCH------HHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTC
T ss_pred HHHHHHHHHHHhcCCCcCCCC-CCEEEEEcCCH------HHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCC
Confidence 999999999998888887776 57888988642 2235678888755 9999999888642 35799999975 6
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++++|++++++.
T Consensus 374 ~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 374 TYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998754
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=199.21 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=158.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.. +.+....+..+...- ..+.+++++|+
T Consensus 175 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~-------~~~~di~~~s~ 243 (399)
T 3tqx_A 175 RFKLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVG-FIGENGRGTPEYCGV-------ADRVDILTGTL 243 (399)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTT-TSSTTSCCHHHHHTC-------TTCCSEEEEES
T ss_pred CceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCcccc-ccCCCCCchHHhhCC-------CCCCcEEEecc
Confidence 6899999999999999999 999999999999999999999732 323333334443220 12556999999
Q ss_pred ccccC-CCCceEEEEEecCHHHHHHHHhc-ccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLG-LPGFRVGAIYSNDDTVVAAATKM-SSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 91 sK~~g-~~G~r~G~i~~~~~~~~~~~~~~-~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
||.+| ++| ||++++++ +.+.+... ..+ ...+++.+.++...++.. .++.++.+++++++++++.+.|+
T Consensus 244 sK~~~g~~g---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~ 316 (399)
T 3tqx_A 244 GKALGGASG---GYTSGHKE-IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGME 316 (399)
T ss_dssp SSSSCSSCC---EEEEECHH-HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhcccCce---EEEEcCHH-HHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHH
Confidence 99998 555 99999654 44444332 222 235556655665555532 25578889999999999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEe-cCCHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFA-NMSEDTLKLSMQR 243 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~-~~~~e~l~~~l~~ 243 (289)
+.|+++.++.++ ++|+.++... +..+++..|++ +||.+.|+.++. ..+++++||+++ .++++++++++++
T Consensus 317 ~~g~~~~~~~~~-~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 388 (399)
T 3tqx_A 317 KLGFQLVPGNHP-IIPVMLGDAQ------LATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEA 388 (399)
T ss_dssp HHTCCBCCCSSS-EEEEEEECHH------HHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred HcCCCcCCCCCC-EEEEEeCCHH------HHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHH
Confidence 999888866665 5667776432 23568888875 699999876554 344579999997 4699999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|++++++.
T Consensus 389 l~~~~~~~ 396 (399)
T 3tqx_A 389 FGQVGKKL 396 (399)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-24 Score=189.90 Aligned_cols=219 Identities=13% Similarity=0.165 Sum_probs=164.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++++++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+. .++ +..
T Consensus 137 l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~----~~~------------~~~ 197 (386)
T 2dr1_A 137 LDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD----IKF------------DKW 197 (386)
T ss_dssp HHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC----CCT------------TTT
T ss_pred HHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc----ccc------------ccc
Confidence 4566655568999999999999999988 899999999999999999999854221 121 123
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHH----------------H----hccccCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA----------------T----KMSSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~----------------~----~~~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.++++.|+||.++.+ .++||++++++ +.+.+ . .....++.+.+.+.++..+++..
T Consensus 198 ~~di~~~s~sK~~~~~-~g~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-- 273 (386)
T 2dr1_A 198 GLDVVFSSSQKAFGVP-PGLAIGAFSER-FLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII-- 273 (386)
T ss_dssp TCSEEEEETTSTTCCC-SSCEEEEECHH-HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH--
T ss_pred CCcEEEEeccccccCC-CceEEEEECHH-HHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH--
Confidence 5679999999999855 23899999654 43332 1 11223446778888888777642
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 142 AQNY--ISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 142 ~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
.++ +++.+++++++++++.+.|++.|+++..++ .+.++|+.++...+ ..++...|.++ ||.+.||..
T Consensus 274 -~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~~~~ 345 (386)
T 2dr1_A 274 -EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIK------GDEVYEAMRKR-GFELAKGYG 345 (386)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCC------HHHHHHHHHHT-TEECEECCG
T ss_pred -HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCC------HHHHHHHHHHC-CeEEecCcc
Confidence 333 678889999999999999998888877765 36678888864222 24678887755 999999986
Q ss_pred CCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 217 f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+. .++++||+++. ++++++++++++|++++++...
T Consensus 346 ~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 346 SV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINELKK 381 (386)
T ss_dssp GG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 53 35799999974 6999999999999999887643
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=193.35 Aligned_cols=225 Identities=11% Similarity=0.031 Sum_probs=159.7
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... +++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+...++ +....+..... .
T Consensus 167 le~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~-~~g~~~~~~~~-~------ 235 (401)
T 2bwn_A 167 LRELIAADDPAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYG-PRGAGVAERDG-L------ 235 (401)
T ss_dssp HHHHHHHSCTTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSS-TTSCCHHHHHT-C------
T ss_pred HHHHHHhhccCCceEEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccC-CCCceeeeccC-c------
Confidence 45555532 36899999999999999999 899999999999999999999954342 22222222111 0
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc---cc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS---SF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+.+++++||||++|++| ||++++ +.+.+.+.... .+ ...+++.+.++..+++... ...+++.++++++
T Consensus 236 ~~~~~i~~~s~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~ 309 (401)
T 2bwn_A 236 MHRIDIFNGTLAKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQM 309 (401)
T ss_dssp GGGCSEEEEESSSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHH
T ss_pred cccCcEEEeechhhccCCC---CEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 1134688999999999888 999995 44444443221 11 1244566666666664321 1124677888999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~-~~ 233 (289)
+++++.+.|++.|+++.++.++ ++|+.++.. .+..++...|++++||.+.|+..|+.. +.+++||+++. ++
T Consensus 310 ~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t 382 (401)
T 2bwn_A 310 HAKVLKMRLKALGMPIIDHGSH-IVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHD 382 (401)
T ss_dssp HHHHHHHHHHHHTCCBCCCSSS-CEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSC
T ss_pred HHHHHHHHHHHCCCcccCCCCC-eEEEEeCCh------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCC
Confidence 9999999998888888877776 677887642 223467777776779999999877653 34699999974 69
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|++++++
T Consensus 383 ~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 383 LKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988654
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=195.55 Aligned_cols=212 Identities=12% Similarity=0.075 Sum_probs=157.4
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCcc-CCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVF-SSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.. ++....+...+ ..+.+++++
T Consensus 177 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~----------~~~~di~~~ 243 (401)
T 1fc4_A 177 RHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV----------MGRVDIITG 243 (401)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC----------TTCCSEEEE
T ss_pred CceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC----------CcCCcEEEe
Confidence 5899999999999999999 9999999999999999999996 6532 23222111112 124579999
Q ss_pred cCcccc-CCCCceEEEEEecCHHHHHHHHhcc-c---cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDL-GLPGFRVGAIYSNDDTVVAAATKMS-S---FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~~-~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|+||.+ |.+| ||++++ +.+.+.+.... . ....+++.+.++..+++.. .. .++.+++++++++++.+.
T Consensus 244 s~sK~~~~~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l~~~ 315 (401)
T 1fc4_A 244 TLGKALGGASG---GYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV---EA-GSELRDRLWANARQFREQ 315 (401)
T ss_dssp ESSSTTCSSSC---EEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH---HT-CHHHHHHHHHHHHHHHHH
T ss_pred cchhhccCCCC---EEEEcC-HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHH
Confidence 999999 5555 999995 45555444322 1 2346778888888777642 11 466788899999999999
Q ss_pred HHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEec-CCHHHHHHHH
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-MSEDTLKLSM 241 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~-~~~e~l~~~l 241 (289)
|++.|+++.+ ..+.++|++++.. .+..++...|. ++||.+.|+..|+.. ..+++||+++. ++++++++++
T Consensus 316 L~~~g~~~~~-~~~~~~~~~~~~~------~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~ 387 (401)
T 1fc4_A 316 MSAAGFTLAG-ADHAIIPVMLGDA------VVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAV 387 (401)
T ss_dssp HHHTTCCBCC-SSSSEEEEEEECH------HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred HHHcCCcccC-CCCCEEEEEcCCh------HHHHHHHHHHH-HCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHH
Confidence 9988888774 5566788888642 22345777776 559999999887643 34689999974 6999999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
++|++++++.
T Consensus 388 ~~l~~~~~~~ 397 (401)
T 1fc4_A 388 EAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=192.70 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=159.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++... ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|. + + ....++ +..
T Consensus 151 l~~~l~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~-~--g-~~~~~~------------~~~ 210 (393)
T 1vjo_A 151 LRTALETH-RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS-L--G-GVPIFL------------DAW 210 (393)
T ss_dssp HHHHHHHH-CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT-T--T-TSCCCT------------TTT
T ss_pred HHHHHhhC-CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc-c--c-CcCCcc------------ccc
Confidence 44555542 5889999999999999998 8999999999999999999998 2 2 221221 123
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc---------------------cccC-CCChHHHHHHHHHhCCc
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM---------------------SSFG-LVSSQTQYLLSALLSDK 139 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---------------------~~~~-~~~~~~q~~~~~~l~~~ 139 (289)
+.+++++|+||.++.+| |+||++++++ +.+.+... .... +.+.+.+.++..+++..
T Consensus 211 ~~di~~~s~sK~l~~~~-~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~ 288 (393)
T 1vjo_A 211 GVDLAYSCSQKGLGCSP-GASPFTMSSR-AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI 288 (393)
T ss_dssp TCSEEECCSSSTTCSCS-SCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH
T ss_pred CccEEEEcCcccccCCC-ceEEEEECHH-HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999998677 9999999654 44444211 1112 46778888888888753
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
. ..++++.+++++++++++.+.|++.|+++..+.+ +.++++.++...+ ..++...|++++||.+.||..
T Consensus 289 ~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~ 360 (393)
T 1vjo_A 289 A--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------GKAVARRLLNEHNIEVGGGLG 360 (393)
T ss_dssp H--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------HHHHHHHHHHHHCEECEECCG
T ss_pred H--HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCC------HHHHHHHHHhhCCEEEecCcc
Confidence 1 3347788899999999999999988888877664 3456677653222 246788887666999999987
Q ss_pred CCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 217 f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l 248 (289)
|. .++++||++ +. .+++++++++++|++++
T Consensus 361 ~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 361 EL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 64 367999995 43 47778999999998875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=194.96 Aligned_cols=221 Identities=17% Similarity=0.155 Sum_probs=155.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++... ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...++ ..........+- ..
T Consensus 178 le~~l~~~-~~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g-~~g~~~~~~~~~-------~~ 245 (409)
T 3kki_A 178 LRMLIQRH-GPGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHG-PNGAGLLAELGL-------TR 245 (409)
T ss_dssp HHHHHHHH-CSCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSS-GGGCCHHHHHTC-------GG
T ss_pred HHHHHHhc-CCeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccC-CCCCcchhhcCC-------CC
Confidence 45666543 4699999999999999999 999999999999999999999874442 212222222210 12
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc--c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS--F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~--~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+.++++.|+||++|.+| ||++++++.+......... + ...+++...++.+.++.. +. ..+.++.++++++
T Consensus 246 ~~di~~~s~sK~~~~~g---g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~-~~~~~~~~~~~~~ 318 (409)
T 3kki_A 246 EVHFMTASLAKTFAYRA---GAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII---ES-ADNRRQHLDRMAR 318 (409)
T ss_dssp GCSEEEEESSSTTCSSC---EEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH---HH-CHHHHHHHHHHHH
T ss_pred CCCEEEeecchhhCCCc---eEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHH
Confidence 45688999999998665 9999976544332222111 1 124455555555555432 22 3678888999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEec-CCHHH
Q 044773 159 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFAN-MSEDT 236 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~~-~~~e~ 236 (289)
++.+.|++.|+++. ..+.++|+.++... +..++...|+++ ||.+.|+..+. +.+.+++||+++. +++++
T Consensus 319 ~l~~~L~~~g~~~~--~~~~~~~~~~~~~~------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 389 (409)
T 3kki_A 319 KLRIGLSQLGLTIR--SESQIIGLETGDER------NTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ 389 (409)
T ss_dssp HHHHHHHTTTCCCC--CSSSEEEEEEESHH------HHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred HHHHHHHHcCCccC--CCCCEEEEEeCCHH------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence 99999999887765 35667788776432 224577777755 99998865442 2446799999964 68999
Q ss_pred HHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDS 250 (289)
Q Consensus 237 l~~~l~~l~~~l~~ 250 (289)
+++++++|+++++.
T Consensus 390 i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 390 IAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998864
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=197.02 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=164.0
Q ss_pred hHHHhhhCC--CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL--KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~--~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.... ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.+.++. ...+..+...-
T Consensus 183 le~~l~~~~~~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~-~g~~~~~~~~~------- 251 (427)
T 2w8t_A 183 LDKRLGRLPKEPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGP-NGRGVYEAQGL------- 251 (427)
T ss_dssp HHHHHHTSCSSSCEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST-TSCCHHHHTTC-------
T ss_pred HHHHHHhccCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCC-CCCchHhhcCC-------
Confidence 456665432 6899999999999999999 9999999999999999999999875542 22334433220
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cc---cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SS---FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
..+.+++++||||++|++| ||++++++. .+.+... .. ....+++.+.++..+++... +.++.++++++
T Consensus 252 ~~~~di~~~s~sK~~g~~g---G~v~~~~~l-~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~ 323 (427)
T 2w8t_A 252 EGQIDFVVGTFSKSVGTVG---GFVVSNHPK-FEAVRLACRPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWS 323 (427)
T ss_dssp TTCCSEEEEESSSTTCSCC---EEEEECCTT-GGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHH
T ss_pred CcCCcEEEecchhhhccCC---CEEEeCHHH-HHHHHHhcccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 2255899999999999778 999996544 3333322 11 12355565555556665321 24677888999
Q ss_pred HHHHHHHHHHhcCCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-CCCeEEEEEec-C
Q 044773 156 RHRKLVSGLEKAGISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-EPGWFRVCFAN-M 232 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~~Ris~~~-~ 232 (289)
+++++.+.|++.|+++. ++..|.++|+.++.. .+..+++..|+++ ||.+.|+..|+.. +.+++||+++. +
T Consensus 324 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~ 396 (427)
T 2w8t_A 324 NARALHGGLKAMGFRLGTETCDSAIVAVMLEDQ------EQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEH 396 (427)
T ss_dssp HHHHHHHHHHHHTCEESCSSCCSSEEEEEESSH------HHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCCcccCCCCCCCEEEEEECCH------HHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCC
Confidence 99999999998888877 441445778887642 2235678887755 9999999877643 35689999975 6
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++++++++++|++++++...
T Consensus 397 t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 397 TPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999887654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=189.69 Aligned_cols=218 Identities=11% Similarity=0.073 Sum_probs=157.2
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++...+ +++++++++||||||.+++ +++|+++|+++|+++|+||+|+.+.++ ....++.+...
T Consensus 158 l~~~l~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--------- 224 (384)
T 1bs0_A 158 LARLLASPCPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIG-EQGRGSCWLQK--------- 224 (384)
T ss_dssp HHHHHHSCCSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSS-GGGCCHHHHTT---------
T ss_pred HHHHHHhcCCCCeEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceec-CCCCchHHhcC---------
Confidence 455665442 4788899999999999999 899999999999999999999865332 11112222211
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc---CCCChHHHHHHHHHhCCchHHHH-HHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF---GLVSSQTQYLLSALLSDKKFAQN-YISENKKRLKQ 155 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~---~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~ 155 (289)
.+.+++++|+||.+|.+| ||++++ +.+.+.+.... .+ ...+++.+.++.++++.. .+ +.++.++++++
T Consensus 225 ~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~ 297 (384)
T 1bs0_A 225 VKPELLVVTFGKGFGVSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---RSDEGDARREKLAA 297 (384)
T ss_dssp CCCSEEEEESSSTTSSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH---HSHHHHHHHHHHHH
T ss_pred CCCcEEEeeccchhhccC---cEEEeC-HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH---hccccHHHHHHHHH
Confidence 134488999999999777 999996 44444443321 22 236778887777777542 21 56778889999
Q ss_pred HHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEec-CC
Q 044773 156 RHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFAN-MS 233 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~~-~~ 233 (289)
+++++.+.|+++|+++.++ ++.++|+.++.. .+..++...|.+ +||.+.|+..|+. .+.+++||+++. ++
T Consensus 298 ~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~------~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~ 369 (384)
T 1bs0_A 298 LITRFRAGVQDLPFTLADS-CSAIQPLIVGDN------SRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHE 369 (384)
T ss_dssp HHHHHHHHHTTSSCEECSC-CSSBCCEEEESH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCC
T ss_pred HHHHHHHHHHhcCCcccCC-CCCEEEEEeCCH------HHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCC
Confidence 9999999999888887654 455667777532 223567777774 5999999988763 235789999974 58
Q ss_pred HHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAF 247 (289)
Q Consensus 234 ~e~l~~~l~~l~~~ 247 (289)
++++++++++|+++
T Consensus 370 ~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 370 MQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=185.11 Aligned_cols=216 Identities=12% Similarity=0.128 Sum_probs=156.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.... ..++. ..
T Consensus 122 l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~------------~~ 182 (366)
T 1m32_A 122 IDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI----PMDIA------------AL 182 (366)
T ss_dssp HHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTT------------TT
T ss_pred HHHHHhcCCCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc----Ccccc------------cc
Confidence 4566666556899999999999999999 88999999999999999999984311 11211 22
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc------------------c--cCCCChHHHHHHHHHhCCchH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS------------------S--FGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~------------------~--~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+.++++.|+||.++ ++.++||++++++.+ +.+.... . .+..+...+.++..+++..
T Consensus 183 ~~di~~~s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-- 258 (366)
T 1m32_A 183 HIDYLISSANKCIQ-GVPGFAFVIAREQKL-AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-- 258 (366)
T ss_dssp TCSEEEEESSSTTC-CCSSEEEEEEEHHHH-TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--
T ss_pred CccEEEecCccccc-CCCceEEEEECHHHH-HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH--
Confidence 45689999999884 334579999965433 2221110 0 1335667777777776542
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhcCCceecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC
Q 044773 142 AQNY--ISENKKRLKQRHRKLVSGLEKAGISCLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS 216 (289)
Q Consensus 142 ~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 216 (289)
..+ +++.+++++++++++.+.|+++|+++..+ .+++++|+.++... . .+..++...|. ++||.+.||..
T Consensus 259 -~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~-~~gi~v~~~~~ 332 (366)
T 1m32_A 259 -AKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDP-Q---YRFSEFYRRLK-EQGFVIYPGKV 332 (366)
T ss_dssp -HHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCT-T---CCHHHHHHHHH-HTTEECEECCC
T ss_pred -HHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccC-C---CCHHHHHHHHH-HCCEEEECCcC
Confidence 333 57788899999999999999888777654 35678889887410 0 12245777776 55999999987
Q ss_pred CCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 217 f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
|+ ++++||+++. ++++++++++++|+++++
T Consensus 333 ~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 333 SQ---SDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp SS---SCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred CC---CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 73 5799999975 589999999999988764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-23 Score=183.66 Aligned_cols=218 Identities=15% Similarity=0.041 Sum_probs=155.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++++++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. +....++.. .
T Consensus 125 l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~------------~ 185 (392)
T 2z9v_A 125 VADMLKAHPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSF----GGMKTHPED------------C 185 (392)
T ss_dssp HHHHHHHCTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTB----TTBSCCGGG------------G
T ss_pred HHHHHhcCCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEccccc----CCccccccc------------c
Confidence 4556654567899999999999999999 88999999999999999999973 222122221 2
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHhc----------------------cccCCCChHHHHHHHHHhCC
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKM----------------------SSFGLVSSQTQYLLSALLSD 138 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~----------------------~~~~~~~~~~q~~~~~~l~~ 138 (289)
+.++++.|+||.++ .+| +||++++++ +.+.+... ...+..+...+.++..+++.
T Consensus 186 ~~d~~~~s~sK~~~~~~g--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 262 (392)
T 2z9v_A 186 KADIYVTGPNKCLGAPPG--LTMMGVSER-AWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL 262 (392)
T ss_dssp TCSEEEECSSSTTCCCSC--CEEEEECHH-HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH
T ss_pred cceEEEecCcccccCCCc--eeEEEECHH-HHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH
Confidence 45688999999764 345 599999654 44444321 11122344555555555543
Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 139 KKFAQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
. .++ +++.+++++++++++.+.|++.|+++..|. .+.++++.++...+ ..++...|.+++||.+.|
T Consensus 263 ~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~L~~~~gi~v~~ 333 (392)
T 2z9v_A 263 Y---LNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD------EKALRQAARARYGVVFSS 333 (392)
T ss_dssp H---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC------HHHHHHHHHHHHCEECEE
T ss_pred H---HhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC------HHHHHHHHHhcCCEEEec
Confidence 2 344 677888999999999999988888776633 35677788763222 246788887666999999
Q ss_pred CCCCCCCCCCeEEEEE-e-cCCHHHHHHHHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCF-A-NMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~-~-~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
|..+. .++++||++ + .++++++++++++|++++++..
T Consensus 334 g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 334 GRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp CCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 87543 367999995 6 5799999999999999987654
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=181.91 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=158.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....++. ..
T Consensus 119 l~~~i~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~----~~~~~~~------------~~ 178 (384)
T 3zrp_A 119 VEEEVRKS-EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVG----AEEVKAE------------EW 178 (384)
T ss_dssp HHHHHHHS-CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTT----TSCCCTT------------TT
T ss_pred HHHHHHhC-CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECccccc----Ccccccc------------cc
Confidence 45566654 6899999999999999999 899999999999999999999742 1111211 22
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHH------------HHh-----------cccc-CCCChHHHHHHHHHhC
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA------------ATK-----------MSSF-GLVSSQTQYLLSALLS 137 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~------------~~~-----------~~~~-~~~~~~~q~~~~~~l~ 137 (289)
+.++++.|+||.++ ++.++||++++++.+... ... .... ++.+...+.++..++.
T Consensus 179 ~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~ 257 (384)
T 3zrp_A 179 NVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR 257 (384)
T ss_dssp TCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH
Confidence 56689999999986 345599999965543332 011 1111 2355566666666665
Q ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 138 DKKFAQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 138 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
.. ..+ +++.+++++++++++.+.|+++|+++..+. +++++|+.++. .+ ..++...|. ++||.+.
T Consensus 258 ~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~-~~gi~v~ 326 (384)
T 3zrp_A 258 LI---EKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-AD------PQKVLAGTV-NEGVEFA 326 (384)
T ss_dssp HH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SC------HHHHHHHHH-TTTCCCE
T ss_pred HH---HhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CC------HHHHHHHHH-HCCEEEe
Confidence 32 333 678889999999999999998888887776 46677888875 22 245777776 4599999
Q ss_pred CCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+|..+.. +++||+++. ++++++++++++|++++++..
T Consensus 327 ~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 327 PGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp ECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 9875432 799999854 689999999999999998764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=184.49 Aligned_cols=219 Identities=13% Similarity=0.096 Sum_probs=158.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. +.. ... +..
T Consensus 140 l~~~i~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g---~~~-~~~------------~~~ 199 (393)
T 3kgw_A 140 VEEGLAQH-KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLG---GVP-IYM------------DQQ 199 (393)
T ss_dssp HHHHHHHH-CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTT---TSC-CCT------------TTT
T ss_pred HHHHHhhC-CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCcccc---Ccc-cch------------hhc
Confidence 45566553 6899999999999999999 889999999999999999999732 111 111 123
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-------------------------cCCCChHHHHHHHHHh
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-------------------------FGLVSSQTQYLLSALL 136 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-------------------------~~~~~~~~q~~~~~~l 136 (289)
+.++++.|+||.++ ++.++||++++++ +.+.+..... .+..+...+.++..++
T Consensus 200 ~~d~~~~s~sK~~~-~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 277 (393)
T 3kgw_A 200 GIDIMYSSSQKVLN-APPGISLISFNDK-AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESL 277 (393)
T ss_dssp TCCEEEEESSSTTC-CCSSCEEEEECHH-HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred CCCEEEecCccccc-CCCceeEEEECHH-HHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 55688999999885 3345899999554 4444432110 1234556666666665
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
.... +..+++..++++++++++.+.|++.|+++..+.. +++.++.+++..+ ..++...|++++||.+.
T Consensus 278 ~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~gi~v~ 349 (393)
T 3kgw_A 278 ALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYN------WRDIVSYVLDHFSIEIS 349 (393)
T ss_dssp HHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBC------HHHHHHHHHHHHCEECB
T ss_pred HHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCC------HHHHHHHHHHhCCEEEe
Confidence 5321 2336888899999999999999998888764433 5667787764332 24688888877799999
Q ss_pred CCCCCCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
||..+ ..++++||++ +. .+++++++++++|++++++..
T Consensus 350 ~g~~~--~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 350 GGLGP--TEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp CCCGG--GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred CCccc--CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 98754 3467999998 65 489999999999999987653
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=183.54 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=159.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ...... +..
T Consensus 130 l~~~i~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~----~~~~~~------------~~~ 189 (411)
T 3nnk_A 130 VEDAVKRI-RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLG----GNPLET------------DVW 189 (411)
T ss_dssp HHHHHHHH-CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBT----TBCCCT------------TTT
T ss_pred HHHHHhhC-CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccC----Ccccch------------hcc
Confidence 45555543 6899999999999999999 889999999999999999998742 211121 123
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--------------------------------------ccCC
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--------------------------------------SFGL 123 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--------------------------------------~~~~ 123 (289)
+.++++.|+||.++ ++.++||++++++ +.+.+.... ..++
T Consensus 190 ~~d~~~~s~~K~l~-~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (411)
T 3nnk_A 190 GLDAVSAGMQKCLG-GPSGTSPITLSAR-MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHT 267 (411)
T ss_dssp TCSEEECCSTTTTC-CCSSEEEEEECHH-HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSC
T ss_pred CCcEEEecCccccC-CCCceEEEEECHH-HHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCC
Confidence 56689999999865 4446899999654 444443221 1123
Q ss_pred CChHHHHHHHHHhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecCccccCCChhhHHHH
Q 044773 124 VSSQTQYLLSALLSDKKFAQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLSSNTFEAEMEL 199 (289)
Q Consensus 124 ~~~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~ 199 (289)
.+...+.++..+++.. .++ +++.+++++++++++.+.|++.|+++..+.+ +.++++.+++..+ ..++
T Consensus 268 ~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~l 338 (411)
T 3nnk_A 268 EATTALFGARECARLI---LQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGIN------GDQA 338 (411)
T ss_dssp CCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCC------HHHH
T ss_pred CCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCC------HHHH
Confidence 4556666666665532 344 7788899999999999999998888776654 5677788764322 2468
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 200 WKKIVYDVKLNISPGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 200 ~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
...|++++||.+.||. +....+++||++ +. ++++++++++++|++++++..
T Consensus 339 ~~~l~~~~gi~v~~g~--~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 339 RKLMLEDFGIEIGTSF--GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp HHHHHHHHSEEEEECC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCeEEeCcc--CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 8888877799999884 333467999998 64 489999999999999988654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=184.82 Aligned_cols=212 Identities=16% Similarity=0.172 Sum_probs=150.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC--CEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN--IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++++|+||||.+++ +++|.++|+++| +++|+|++|+ ++.. ..++. ..+.++++
T Consensus 138 ~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~---~~~~-~~~~~------------~~~~di~~ 198 (384)
T 1eg5_A 138 EDTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT---IGKI-PFSLE------------KLEVDYAS 198 (384)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT---TTTS-CCCCT------------TTCCSEEE
T ss_pred CCCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh---cCCc-ccCch------------hcCCCEEE
Confidence 46899999999999999999 899999999999 9999999997 2221 11221 12467889
Q ss_pred ecCccccCCCCceEEEEEecCHH-HHHHHHhc-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDT-VVAAATKM-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~-~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
.|+||.+|.+| +||++++++. +...+... ...+..+.+.+.++..+++.. .+++++.+++++++++++.
T Consensus 199 ~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~ 273 (384)
T 1eg5_A 199 FSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKLV 273 (384)
T ss_dssp EEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHH
T ss_pred ecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHH
Confidence 99999999778 7999997653 12111110 123346778888888888752 4467888999999999999
Q ss_pred HHHHhcCCceecCC-c--eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------------C
Q 044773 162 SGLEKAGISCLKSN-A--GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----------------E 221 (289)
Q Consensus 162 ~~l~~~g~~~~~~~-~--g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~ 221 (289)
+.|++.|+++..+. + +.++++.++.. +..++...|. ++||.+.||..|+.. .
T Consensus 274 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 345 (384)
T 1eg5_A 274 SGLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIA 345 (384)
T ss_dssp HHHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHH
T ss_pred HHhCCCCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhc
Confidence 99988788776553 1 23455555521 1245776664 789999999877542 1
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++||+++. ++++++++++++|++++++...
T Consensus 346 ~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 346 QGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4789999974 6999999999999999887644
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-24 Score=191.67 Aligned_cols=210 Identities=15% Similarity=0.162 Sum_probs=149.9
Q ss_pred HHHhhhCCCccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++. +++++|++++|+||||. +++.+++++|+++|+++|+++|+||+|.++.+.+.. .++..+ .. ..
T Consensus 177 ~~~l~--~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~-~~-------~~ 245 (397)
T 2ord_A 177 RRKMS--EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL-FAYQKY-GV-------VP 245 (397)
T ss_dssp HHHCC--TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHH-TC-------CC
T ss_pred HHHhh--cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccc-hhhhhh-CC-------CC
Confidence 44443 47899999999999999 999999999999999999999999999876554432 222222 10 11
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+ +.||||.++ +|+|+||++++++.+ .+.. ....+..+++.+.++.++++... + ++.++++++++++
T Consensus 246 d----~~s~sK~~~-~G~r~G~~~~~~~~~--~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~ 313 (397)
T 2ord_A 246 D----VLTTAKGLG-GGVPIGAVIVNERAN--VLEPGDHGTTFGGNPLACRAGVTVIKELT---K--EGFLEEVEEKGNY 313 (397)
T ss_dssp S----EEEECGGGG-TTSCCEEEEECSTTC--CCCTTSSCCSSTTCHHHHHHHHHHHHHHT---S--TTHHHHHHHHHHH
T ss_pred C----eeeeccccC-CCcCeEEEEEchHhc--ccCCCCcCCCCCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHH
Confidence 2 238899999 899999999977643 3321 12223467888888887776422 1 3456777788888
Q ss_pred HHHHHHhc--CCce---ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCC
Q 044773 160 LVSGLEKA--GISC---LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMS 233 (289)
Q Consensus 160 l~~~l~~~--g~~~---~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~ 233 (289)
+.+.|++. ++.. ..+. |.++|++++... +..++...|+ ++||.+.|+. ++++||+++ ..+
T Consensus 314 l~~~L~~~~~~~~~~~~~~~~-g~~~~~~~~~~~------~~~~l~~~l~-~~gi~v~~~~------~~~iRis~~~~~~ 379 (397)
T 2ord_A 314 LMKKLQEMKEEYDVVADVRGM-GLMIGIQFREEV------SNREVATKCF-ENKLLVVPAG------NNTIRFLPPLTVE 379 (397)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-TTEEEEEECTTS------CHHHHHHHHH-HTTEECEEET------TTEEEECCCTTCC
T ss_pred HHHHHHHHHHhCCceEEEEEE-eEEEEEEECChH------HHHHHHHHHH-HCCCEEccCC------CCEEEEECCcCCC
Confidence 88888765 3432 2333 456778876432 1245777777 4799999872 568999975 369
Q ss_pred HHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVD 249 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~ 249 (289)
++++++++++|+++++
T Consensus 380 ~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 380 YGEIDLAVETLKKVLQ 395 (397)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=178.40 Aligned_cols=213 Identities=12% Similarity=0.058 Sum_probs=152.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.. + ....++..+
T Consensus 116 l~~~l~~~-~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~~---~-~~~~~~~~~------------ 175 (353)
T 2yrr_A 116 VARALKRR-RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTTL---G-MLPFSMRAM------------ 175 (353)
T ss_dssp HHHHHHHS-CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT---T-TSCCCHHHH------------
T ss_pred HHHHHHhC-CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCccc---c-ccccccccc------------
Confidence 45555543 6899999999999999999 88999999999999999999962 2 222233222
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHH-----------------hccccCCCChHHHHHHHHHhCCchHHH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAAT-----------------KMSSFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
+.++++.|++|.++ .+| +||++++++.+ +.+. .....++.+...+.++..+++.. .
T Consensus 176 ~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~ 249 (353)
T 2yrr_A 176 GVDYAFTGSQKCLSAPPG--LAPIAASLEAR-KAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLV---L 249 (353)
T ss_dssp TCSEEECCTTSTTCCCSS--CEEEEECHHHH-HHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH---H
T ss_pred CceEEEecCcccccCCCc--eEEEEECHHHH-HHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH---H
Confidence 34588999999764 455 69999965544 3222 11112335566666666666532 3
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCCceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 144 NY-ISENKKRLKQRHRKLVSGLEKAGISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 144 ~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
++ +++.+++++++++++.+.|++.|+++..+. +++++|++++...+ ..++...|. ++||.+.||..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-~~gi~v~~g~~~~-- 320 (353)
T 2yrr_A 250 EEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVD------ADRLVRALY-AEGVAVAGGIGPT-- 320 (353)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCC------HHHHHHHHH-HTTEECEECCGGG--
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCC------HHHHHHHHH-HCCEEEeCCcccc--
Confidence 33 678888999999999999988888877654 56677788763222 245777776 4599999998664
Q ss_pred CCCeEEEEE-ecCCHHHHH-HHHHHHHHHHH
Q 044773 221 EPGWFRVCF-ANMSEDTLK-LSMQRLKAFVD 249 (289)
Q Consensus 221 ~~~~~Ris~-~~~~~e~l~-~~l~~l~~~l~ 249 (289)
.++++|+++ +..++++++ +++++|+++++
T Consensus 321 ~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 321 RGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 357899999 446888888 99999998875
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=186.83 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=151.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHH-HHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNE-LNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~-l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++++|++++|+||||.+++.++ +++|.++|+++|+++|+||+|+++.+.+... . .+..
T Consensus 175 l~~~l~--~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~---------- 240 (392)
T 3ruy_A 175 LKAAIT--PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-A-CDWD---------- 240 (392)
T ss_dssp HHHHCC--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-G-GGGG----------
T ss_pred HHHHhc--cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-h-hhcc----------
Confidence 344554 57999999999999999996555 9999999999999999999998776655432 1 1111
Q ss_pred CCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
+....+.||||.++ +| +|+||+++++ .+.+.+.... ..+..+++.+.++..+++.. .. ++.++++++++
T Consensus 241 -~~~~d~~~~SK~l~-gG~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~ 312 (392)
T 3ruy_A 241 -NVTPDMYILGKALG-GGVFPISCAAANR-DILGVFEPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLTERSLQLG 312 (392)
T ss_dssp -TCCCSEEEECGGGG-TTTSCCEEEEECH-HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHH
T ss_pred -CCCCCEEEEchhhh-CChhhhEEEEECH-HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH---Hh--hhHHHHHHHHH
Confidence 11122347899987 67 9999999954 4444433322 22347788888888888743 22 56778899999
Q ss_pred HHHHHHHHhcC---CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 158 RKLVSGLEKAG---ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 158 ~~l~~~l~~~g---~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+++.+.|++++ +....+.++++ ++.++. +. .++...|. ++||.+.|+. ++++||+++. .+
T Consensus 313 ~~l~~~L~~~~~~~~~~~~~~g~~~-~~~~~~--~~------~~l~~~l~-~~gi~v~~~~------~~~iRi~~~~~~~ 376 (392)
T 3ruy_A 313 EKLVGQLKEIDNPMITEVRGKGLFI-GIELNE--PA------RPYCEQLK-AAGLLCKETH------ENVIRIAPPLVIS 376 (392)
T ss_dssp HHHHHHHTTCCCTTEEEEEEETTEE-EEEESS--CS------HHHHHHHH-TTTEECCCBT------TTEEEECCCTTCC
T ss_pred HHHHHHHHHhcCCCceEEEeeeeEE-EEEEcc--hH------HHHHHHHH-HCCcEEecCC------CCEEEEECCCCCC
Confidence 99999998874 33444555544 455654 22 45777776 7799999874 5799999753 68
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFV 248 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l 248 (289)
++++++++++|++++
T Consensus 377 ~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 377 EEDLEWAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=185.84 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=142.5
Q ss_pred hHHHhhhC-CCccEEEEeCC-CC-CCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SN-PLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~N-PtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++... ++..++++++| +| ++|. +++.+++++|.++|+++|+++|+||+|.++.+.+... . .+..+
T Consensus 179 le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~-~-~~~~~------ 250 (430)
T 3i4j_A 179 LRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL-A-LSRWS------ 250 (430)
T ss_dssp HHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G-GGGTT------
T ss_pred HHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh-h-hhhhc------
Confidence 45555532 13344566666 66 8886 6788899999999999999999999999876655421 1 11210
Q ss_pred CCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+....+.+|||+++ +| +|+||++++ +.+.+.+.. ....+..|++.+.++.++++.... ++..+..+
T Consensus 251 ----~~~~di~t~sK~l~-~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~ 323 (430)
T 3i4j_A 251 ----GVTPDIAVLGKGLA-AGYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAAK 323 (430)
T ss_dssp ----TCCCSEEEECGGGT-TTSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred ----CCCCcEEEEccccc-CCccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHHH
Confidence 11122447999998 69 999999995 555555543 223344788999988888874322 22234444
Q ss_pred HHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCC---hhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNT---FEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWF 225 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~ 225 (289)
+..+..++.+.+.+.++ ++....+.+ .++++++.+...... .....+++..++ ++||.+.|+..+. ..+.+++
T Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~~~i 401 (430)
T 3i4j_A 324 ERGAQLLAGLQALQARFPQMMQVRGTG-LLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGAEPNGRGDHL 401 (430)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEEC------------CHHHHHHHHH-HTTEECC-----------CEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEE-EEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEecccccCCCCCCEE
Confidence 44444444455544444 344455555 466677653211100 011245777776 6799999984332 2346789
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
||+++. .+++++++++++|++++++.
T Consensus 402 Ri~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 402 LLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999973 69999999999999998753
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=178.86 Aligned_cols=210 Identities=12% Similarity=0.028 Sum_probs=152.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|+. +....++. ..+.++++
T Consensus 120 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~----~~~~~~~~------------~~~~d~~~ 180 (352)
T 1iug_A 120 EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSL----LVGEVALE------------AMGVDAAA 180 (352)
T ss_dssp SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTB----TTBCCCSG------------GGTCSEEE
T ss_pred cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccc----cCcceecc------------ccCeeEEE
Confidence 47899999999999999999 88999999999 999999999973 22111211 12456889
Q ss_pred ecCccccCCCCceEEEEEecCHHHHH------------HHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVA------------AAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~------------~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
.|+||.++ ++.++||++++++.+.. ... .....+..+...+.++..+++.. .+++++.+++
T Consensus 181 ~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~ 256 (352)
T 1iug_A 181 SGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---LPRLEEHLAL 256 (352)
T ss_dssp EESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---GGGHHHHHHH
T ss_pred ecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 99999664 22348999996554421 111 11222345667777776666542 2236788889
Q ss_pred HHHHHHHHHHHHHhcCCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 153 LKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
++++++++.+.|++.|+++..+. .+.++|++++...+ ..++...|. ++||.+.||..+ ..++++||+++.
T Consensus 257 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-~~gi~v~~~~~~--~~~~~iRi~~~~ 327 (352)
T 1iug_A 257 KAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEAFA-QRGAVIAGGQGP--LKGKVFRLSLMG 327 (352)
T ss_dssp HHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHHHH-TTTEECEECCGG--GTTTEEEECCCS
T ss_pred HHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCC------HHHHHHHHH-HCCEEEEeCCCc--cCCCEEEEEccc
Confidence 99999999999998888887764 56678888764222 245777776 559999998732 346799999975
Q ss_pred -CCHHHHHHHHHHHHHHHHHH
Q 044773 232 -MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 -~~~e~l~~~l~~l~~~l~~~ 251 (289)
++++++++++++|++++++.
T Consensus 328 ~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 328 AYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 57999999999999988754
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=181.09 Aligned_cols=218 Identities=11% Similarity=0.094 Sum_probs=157.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++.+. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....+.. ..
T Consensus 128 l~~~i~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~----~~~~~~~------------~~ 187 (416)
T 3isl_A 128 IIREIKKV-KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIG----GCEVKVD------------EW 187 (416)
T ss_dssp HHHHHHHH-CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTT----TSCCCTT------------TT
T ss_pred HHHHHhhC-CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCcccc----CCCcchh------------hc
Confidence 45555533 6899999999999999999 889999999999999999999732 1111211 22
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--------------------------------------c--cc
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--------------------------------------S--SF 121 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------------------------------------~--~~ 121 (289)
+.++++.|++|.++ ++.++|+++++++. .+.+... . ..
T Consensus 188 ~~d~~~~s~~K~l~-g~~g~g~~~~~~~~-~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 265 (416)
T 3isl_A 188 KIDAAIGGTQKCLS-VPSGMAPITYNERV-ADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNH 265 (416)
T ss_dssp TCSEEECCSSSTTC-CCSSEEEEEECHHH-HHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCS
T ss_pred CCCEEEecCccccC-CCCCeEEEEECHHH-HHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCC
Confidence 56689999999864 44568999996544 3333311 0 12
Q ss_pred CCCChHHHHHHHHHhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecCccccCCChhhHH
Q 044773 122 GLVSSQTQYLLSALLSDKKFAQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLSSNTFEAEM 197 (289)
Q Consensus 122 ~~~~~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~ 197 (289)
++.+...+.++..++... ..+ +++.+++++++++++.+.|++.|+++..+.+ +.++++.+++..+ ..
T Consensus 266 ~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 336 (416)
T 3isl_A 266 HTEATTMLYALREGVRLV---LEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGID------GE 336 (416)
T ss_dssp SCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCC------HH
T ss_pred CCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCC------HH
Confidence 234556666666666532 444 7888999999999999999998888877654 4577788764322 25
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE-ecCCHHH-HHHHHHHHHHHHHHHH
Q 044773 198 ELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF-ANMSEDT-LKLSMQRLKAFVDSIT 252 (289)
Q Consensus 198 ~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~-~~~~~e~-l~~~l~~l~~~l~~~~ 252 (289)
++...|++++||.+.+|.. ...++++||++ +..++++ +++++++|++++++..
T Consensus 337 ~l~~~L~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 337 SVRDMLLAQFGIEIASSFG--PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp HHHHHHHHHHCEECBCCCS--TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCEEEecCCC--CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 6888887777999999874 23467999999 4345555 9999999999998753
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=181.49 Aligned_cols=203 Identities=17% Similarity=0.179 Sum_probs=142.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|..+.+. . ++ ++ +.++++.
T Consensus 146 ~~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~-~---~~-~~------------~~di~~~ 205 (404)
T 1e5e_A 146 PNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT-N---PV-DF------------GVDVVVH 205 (404)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC-C---GG-GG------------TCSEEEE
T ss_pred CCCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhC-C---cc-cc------------CCEEEEE
Confidence 47899999999999999998 9999999999 99999999999976442 1 11 11 5679999
Q ss_pred cCccccCCCCceE-EEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRV-GAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|+||+++++|+|+ ||++++++.+.+.+...... ...+++.+.++...++.. . ...+...++.+.+.+.+
T Consensus 206 S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~---~----~~~~~~~~~~~~l~~~l 278 (404)
T 1e5e_A 206 SATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL---N----IRMKAESENAMKVAEYL 278 (404)
T ss_dssp ETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH---H----HHHHHHHHHHHHHHHHH
T ss_pred cCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH---H----HHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999765555355544333 236778888888888763 2 22223344444455555
Q ss_pred Hhc---------------CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------
Q 044773 165 EKA---------------GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 219 (289)
Q Consensus 165 ~~~---------------g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 219 (289)
++. ++++.++ .++++.| +++.. .+.+..++++.|| +.+|..||.
T Consensus 279 ~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~---------~~~~~~~l~~~~i-~~~~~s~G~~~sl~~ 347 (404)
T 1e5e_A 279 KSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSG---------FEGAKKLLDNLKL-ITLAVSLGGCESLIQ 347 (404)
T ss_dssp HTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTH---------HHHHHHHHHTCSS-SEESSCCCSSSCEEE
T ss_pred HhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCC---------HHHHHHHHHhCCC-ceeccCCCCcceeee
Confidence 443 2222222 2777776 76531 1234556778899 556666652
Q ss_pred -----------------CC--CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 -----------------TE--PGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 -----------------~~--~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+ ++++|||++. +++++++++|+++++..-.
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 348 HPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDALLR 397 (404)
T ss_dssp CGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHHC
T ss_pred cccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHHHHH
Confidence 12 5899999995 8899999999998876543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=179.76 Aligned_cols=218 Identities=16% Similarity=0.141 Sum_probs=156.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++... ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.. +....++. ..
T Consensus 136 l~~~i~~~-~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~----~~~~~~~~------------~~ 195 (393)
T 2huf_A 136 IRDALLIH-KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASL----GGAPMFMD------------RW 195 (393)
T ss_dssp HHHHHHHH-CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB----TTBCCCTT------------TT
T ss_pred HHHHHhcc-CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEccccc----CCCCcchh------------hc
Confidence 34555532 5899999999999999999 89999999999999999999863 22111211 22
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHhc----cc---------------------cCCCChHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATKM----SS---------------------FGLVSSQTQYLLSAL 135 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~~----~~---------------------~~~~~~~~q~~~~~~ 135 (289)
+.++++.|+||.+ |.+|+ ||++++ +.+.+.+... .. .+..+...+.++..+
T Consensus 196 ~~d~~~~s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 272 (393)
T 2huf_A 196 EIDAMYTGSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREA 272 (393)
T ss_dssp TCSEEECCSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHH
T ss_pred CccEEEECCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHH
Confidence 5678899999985 55676 999996 4555554432 11 122445566666656
Q ss_pred hCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEE
Q 044773 136 LSDKKFAQN-YISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 136 l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
++.. .+ .+++.+++++++++++.+.|++.|+++..+. +++++++.++...+ ..++...|++++||.+
T Consensus 273 l~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~~~~gi~v 343 (393)
T 2huf_A 273 IAMA---CEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVD------WLKAAQYAMKTYLVEI 343 (393)
T ss_dssp HHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCC------HHHHHHHHHHHHCEEC
T ss_pred HHHH---HHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCC------HHHHHHHHHHhCCEEE
Confidence 6532 22 3677888899999999999998888877663 34577787753222 2467888876779999
Q ss_pred eCCCCCCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 212 SPGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 212 ~pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.||..|. .++++||++ +. ++++++++++++|++++++...
T Consensus 344 ~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 344 SGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp BCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9988653 367999999 64 4788999999999999876543
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=185.16 Aligned_cols=223 Identities=14% Similarity=0.144 Sum_probs=146.3
Q ss_pred hHHHhhhC---CCccEEEEe-CCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccc
Q 044773 2 YQLAQKRH---LKVKGVLVT-NPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~---~~~~~i~l~-~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 76 (289)
++++++.. +++++|+++ +|+| || .+++.+++++|.++|+++|+++|+||+|+++.+.+... .+ +.
T Consensus 187 l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~------- 256 (426)
T 1sff_A 187 IHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AM-EQ------- 256 (426)
T ss_dssp HHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GG-GG-------
T ss_pred HHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-hh-hh-------
Confidence 34555431 356676553 4477 99 88999999999999999999999999999865544321 11 11
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
.+.++.+.||||++| +|+|+||+++++ .+.+.+.. .......|++.+.++.++++... + ....++++
T Consensus 257 ----~~~~~di~s~sK~~~-~GlriG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~~~~~ 325 (426)
T 1sff_A 257 ----MGVAPDLTTFAKSIA-GGFPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLLQKAN 325 (426)
T ss_dssp ----TTSCCSEEEECGGGG-TSSCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHHHHHH
T ss_pred ----cCCCCCEEEEccccc-CCCceEEEEEcH-HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHH
Confidence 122233559999999 499999999965 44443332 12223467888888887665321 1 12334455
Q ss_pred HHHHHHHHHHHhc----C-CceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 155 QRHRKLVSGLEKA----G-ISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g-~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++++++.+.|+++ . +....+. |+++|+++...... ....+..+++..|+ ++||.+.||..+ ++++||
T Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~----~~~iRi 399 (426)
T 1sff_A 326 DLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY----YNVLRI 399 (426)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT----SCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC----CCEEEE
Confidence 5555555555543 2 2223344 57888988532100 01123456777776 569999998764 468999
Q ss_pred EEe-cCCHHHHHHHHHHHHHHHHHH
Q 044773 228 CFA-NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 228 s~~-~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++ .++++++++++++|++++++.
T Consensus 400 ~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 400 LVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCccCCHHHHHHHHHHHHHHHHHH
Confidence 996 479999999999999988754
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=180.48 Aligned_cols=219 Identities=14% Similarity=0.118 Sum_probs=157.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.. + ....++. ..
T Consensus 135 l~~~l~~~-~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~---g-~~~~~~~------------~~ 194 (396)
T 2ch1_A 135 LARAIELH-QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASL---C-GVPFYMD------------KW 194 (396)
T ss_dssp HHHHHHHH-CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---T-TBCCCTT------------TT
T ss_pred HHHHHHhC-CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEccccc---c-CCccchh------------hc
Confidence 34555542 5899999999999999999 89999999999999999999982 2 2212221 22
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-------------------------cccCCCChHHHHHHHHHh
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-------------------------SSFGLVSSQTQYLLSALL 136 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-------------------------~~~~~~~~~~q~~~~~~l 136 (289)
+.++++.|++|.++ ++.++|++++++ .+.+.+... ...++.+...+.++..++
T Consensus 195 ~~d~~~~s~~K~~~-~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 272 (396)
T 2ch1_A 195 EIDAVYTGAQKVLG-APPGITPISISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL 272 (396)
T ss_dssp TCCEEECCCC-CCC-CCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred CcCEEEEcCCcccc-CCCCeEEEEECH-HHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHH
Confidence 34577789999876 334569999965 444443211 011235667777777777
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g----~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
+... +..+++.+++++++++++.+.|+++|+++..+.++ .++++.++...+ ..++...|++++||.+.
T Consensus 273 ~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~~~~gi~v~ 344 (396)
T 2ch1_A 273 AQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------WWKVSQYAMNNFSLEVQ 344 (396)
T ss_dssp HHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HHHHHHHHHHHHCBCCB
T ss_pred HHHH--HhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCC------HHHHHHHHHHhCCEEEe
Confidence 6421 34577888999999999999999888888777653 367777753222 24688888766799999
Q ss_pred CCCCCCCCCCCeEEEEE-ec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 213 PGSSCHCTEPGWFRVCF-AN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 213 pg~~f~~~~~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+|..+. .++++||++ +. .+++++++++++|++++++..
T Consensus 345 ~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 345 GGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp CCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred cCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 987542 367999999 53 589999999999999988654
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=177.36 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=152.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....++..+
T Consensus 157 l~~~l~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g----~~~~~~~~~------------ 215 (406)
T 1kmj_A 157 LPTLFD--EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVM----HHPVDVQAL------------ 215 (406)
T ss_dssp HHHHCC--TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTT----TSCCCHHHH------------
T ss_pred HHHHhc--cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcC----CCCCccccc------------
Confidence 344443 46899999999999999999 999999999999999999999852 212222222
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc----------------------c-CCCChHHHHHHH-HHhC
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS----------------------F-GLVSSQTQYLLS-ALLS 137 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~----------------------~-~~~~~~~q~~~~-~~l~ 137 (289)
+.++++.|+||.+|.+| +||++++ +.+.+.+..... + ...+++.+.++. .+++
T Consensus 216 ~~d~~~~s~~K~~g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 292 (406)
T 1kmj_A 216 DCDFYVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE 292 (406)
T ss_dssp TCSEEEEEGGGTTSCTT--CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEchhccCCCC--cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHH
Confidence 56788999999998778 8999995 455544432210 1 113445555433 4444
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 138 DKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
... ...+++.+++++++++++.+.|++. |+++..+ .++++.| .++. . +..++...| .++||.+.||
T Consensus 293 ~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~-~------~~~~~~~~l-~~~gi~v~~g 361 (406)
T 1kmj_A 293 YVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGK-H------HAYDVGSFL-DNYGIAVRTG 361 (406)
T ss_dssp HHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETT-C------CHHHHHHHH-HHTTEECEEE
T ss_pred HHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECC-C------CHHHHHHHH-hhCCcEEEec
Confidence 221 2246778888999999999999988 8888877 7777665 5542 1 123466555 5779999998
Q ss_pred CCCCC------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 215 SSCHC------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 215 ~~f~~------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
..|.. ..++++||+++. +++++++.++++|+++++.
T Consensus 362 ~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 362 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp CTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 86532 125799999975 5999999999999998765
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=181.22 Aligned_cols=200 Identities=17% Similarity=0.185 Sum_probs=144.5
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||||.+ .+.+++++|.++|+++|+++|+||+|.++...+.. .++..+ . .... +.
T Consensus 171 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~-~--------~~~d---~~ 237 (375)
T 2eh6_A 171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF-YAYQHF-N--------LKPD---VI 237 (375)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGG-T--------CCCS---EE
T ss_pred CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-hhhhhc-C--------CCCC---EE
Confidence 478999999889999999 56889999999999999999999999976443322 122222 1 1111 22
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++ +|+|+||+++++ .+.+.+.. .......+++.+.++.++++.. . +..++++++++++.+.|++
T Consensus 238 s~SK~~~-~g~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~----~~~~~~~~~~~~l~~~L~~ 308 (375)
T 2eh6_A 238 ALAKGLG-GGVPIGAILARE-EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV---E----KLLPHVREVGNYFKEKLKE 308 (375)
T ss_dssp EECGGGG-TTSCCEEEEEEH-HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHH
T ss_pred EEccccc-CCCCeEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHH
Confidence 8889999 799999999965 44443333 1222336777777776666532 2 6677888888999999988
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~l~~l~ 245 (289)
++....++ .|+++|++++.. . .+++..|. ++||.+.|+. ++++||+++ ..+++++++++++|+
T Consensus 309 ~~~~~~~~-~g~~~~~~~~~~--~------~~~~~~l~-~~gi~~~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~ 372 (375)
T 2eh6_A 309 LGKGKVKG-RGLMLGLELERE--C------KDYVLKAL-EKGLLINCTA------GKVLRFLPPLIIQKEHIDRAISVLR 372 (375)
T ss_dssp TTSSEEEE-ETTEEEEECSSC--C------HHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HhcCCceE-EEEEEEEEEcCc--H------HHHHHHHH-HCCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 76544433 456788888641 2 35777776 5799999862 578999986 379999999999998
Q ss_pred HH
Q 044773 246 AF 247 (289)
Q Consensus 246 ~~ 247 (289)
++
T Consensus 373 ~~ 374 (375)
T 2eh6_A 373 EI 374 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=184.14 Aligned_cols=225 Identities=11% Similarity=0.071 Sum_probs=145.6
Q ss_pred hHHHhh-hC-CCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQK-RH-LKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~-~~-~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++. .+ +++++|+++++ +| ||.++ +++++++|.++|++||+++|+||+|.++++.|..+ . .+.
T Consensus 204 le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-~-~~~-------- 272 (452)
T 3n5m_A 204 VDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAF-G-FMN-------- 272 (452)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G-GGG--------
T ss_pred HHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccc-h-hhh--------
Confidence 345554 22 35667677766 89 99665 88899999999999999999999999876655432 1 111
Q ss_pred CCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh--------ccccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK--------MSSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
.+....+.+|||+++ .| +|+||++++ +.+.+.+.. ....+..|++.+.++.++++.... +.
T Consensus 273 ---~~~~~di~t~sK~l~-~G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~ 342 (452)
T 3n5m_A 273 ---YDVKPDIITMAKGIT-SAYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-----EN 342 (452)
T ss_dssp ---TTCCCSEEEECGGGG-TTSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH-----TT
T ss_pred ---cCCCCCEEeeccccc-CCCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh-----cc
Confidence 122233557999998 59 999999995 455554422 112334788888888887764321 12
Q ss_pred HHHHHHHHHHHHHHHHH----hcC-CceecCCceEEEEEecCccccCC-C--hhhHHHHHHHHHHhcCeEEeCCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLE----KAG-ISCLKSNAGLFCWVDMRHLLSSN-T--FEAEMELWKKIVYDVKLNISPGSSCHCT 220 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~----~~g-~~~~~~~~g~~~~i~~~~~~~~~-~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 220 (289)
..++++++.+++++.|. +++ +....+.+ .++++.+....... . .....+++..++ +.||.+.|+..|...
T Consensus 343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~ 420 (452)
T 3n5m_A 343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKG-LLVGIELVNDKETKEPIDNDKIASVVNACK-EKGLIIGRNGMTTAG 420 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS-SCEEEEEEEETTTTEECCHHHHHHHHHHHH-HTTEECEECTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCCcccCCCCHHHHHHHHHHHH-HCCcEEeecCcccCC
Confidence 23334444444444444 332 33344444 45556664321110 0 011235666666 669999999887665
Q ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 221 ~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
.++++||+++. .+++++++++++|+++++
T Consensus 421 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 421 YNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 67899998754 699999999999998875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=182.49 Aligned_cols=224 Identities=16% Similarity=0.163 Sum_probs=146.7
Q ss_pred hHHHhhhC--CCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH--LKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++++. +++++ ++++| +||||. +++++++++|.++|+++|+++|+||+|+++.+.+.. .. .+...
T Consensus 192 le~~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~-~~-~~~~~------ 262 (433)
T 1zod_A 192 AFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM-FA-CQRDG------ 262 (433)
T ss_dssp HHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-ST-HHHHT------
T ss_pred HHHHHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchH-hH-HhhcC------
Confidence 34555432 34555 55677 689995 678999999999999999999999999987554432 11 12211
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--c--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--S--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
....+.||||++| +|+|+||+++++ .+.+.+... . ..+..|++.+.++.++++... + ....+++
T Consensus 263 -----~~~di~s~sK~~~-~G~~ig~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~---~--~~~~~~~ 330 (433)
T 1zod_A 263 -----VTPDILTLSKTLG-AGLPLAAIVTSA-AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ---R--DGLVARA 330 (433)
T ss_dssp -----CCCSEEEECHHHH-TTSSCEEEEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHH
T ss_pred -----CCCCEEEeccccc-CCCCeeEEEEhH-HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--CCHHHHH
Confidence 1122458999999 599999999965 555544432 1 233468888888777775321 1 1233445
Q ss_pred HHHHHHHHHHHHhc----C-CceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 154 KQRHRKLVSGLEKA----G-ISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 154 ~~~~~~l~~~l~~~----g-~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
+++++++.+.|+++ + +....+. |.++|++++..... .......++...++ ++||.+.||..|+ .++++|
T Consensus 331 ~~~~~~l~~~l~~l~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~--~~~~lR 406 (433)
T 1zod_A 331 NVMGDRLRRGLLDLMERFDCIGDVRGR-GLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPG--MGGVFR 406 (433)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTT--SCCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCC--CCCEEE
Confidence 55555666655543 2 2233344 45667887642100 00022356777777 6799999998775 357999
Q ss_pred EEEe-cCCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFA-NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~-~~~~e~l~~~l~~l~~~l~~ 250 (289)
|+++ ..+++++++++++|++++++
T Consensus 407 i~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 407 IAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCcCCCHHHHHHHHHHHHHHHHH
Confidence 9875 36999999999999998765
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=177.38 Aligned_cols=219 Identities=13% Similarity=0.063 Sum_probs=150.7
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC-ccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+++.++... ...+..+....+ .+.
T Consensus 163 l~~~i~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~---~~~ 235 (397)
T 3f9t_A 163 VKDAVEDY-DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD---FSL 235 (397)
T ss_dssp HHHHHHHS-CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCS---GGG
T ss_pred HHHHHhhc-CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccc---ccc
Confidence 45566653 6899999999999999988 899999999999999999999865432111 000000000000 012
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC----------CC---ChHHHHHHHHHhCCchHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------LV---SSQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------~~---~~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
+.++++.|++|.++ +|.|+|+++++++.+.+.+.....+. .. +.+.+.++..++. ....+
T Consensus 236 -~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~ 308 (397)
T 3f9t_A 236 -GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG-----REGQR 308 (397)
T ss_dssp -TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH-----HHHHH
T ss_pred -cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh-----HHHHH
Confidence 55688999999886 77899999998776654443222221 11 2244444444442 34467
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 148 ENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
+..++++++++++.+.|++.|+++..+..+.++++.++. ..++...|. ++||.+.++.. ++++||
T Consensus 309 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l~-~~gi~v~~~~~-----~~~~Ri 373 (397)
T 3f9t_A 309 KIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEVCKKLR-DRGIYVSVCNC-----VKALRI 373 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHHHHHHH-HTTCBCEECSS-----SSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHHHHHHH-hCCeEEeccCC-----CCEEEE
Confidence 777888899999999999888875555555566677653 135777776 55999998764 479999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
+++. ++++++++++++|+++++
T Consensus 374 ~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 374 VVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEcCCCCHHHHHHHHHHHHHhhC
Confidence 9974 699999999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=179.53 Aligned_cols=211 Identities=18% Similarity=0.164 Sum_probs=148.6
Q ss_pred CCccEEEEeCCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTM--SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~--~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|+++ |+||||.++ +.+++++|+++|+++|+++|+||+|+++.+.+... .. +... .... +
T Consensus 182 ~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~--------~~~d---~ 247 (406)
T 4adb_A 182 DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AY-MHYG--------VTPD---L 247 (406)
T ss_dssp TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HH-HHHT--------CCCS---E
T ss_pred CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HH-HhcC--------CCCC---E
Confidence 578888887 999999998 99999999999999999999999999776655432 11 1211 1122 2
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.||||.++ +|+|+||++++ +.+.+.+.... ..+..+++.+.++..+++.... ++..++++++++++.+.|+
T Consensus 248 ~t~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~ 320 (406)
T 4adb_A 248 LTTAKALG-GGFPVGALLAT-EECARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PEMLNGVKQRHDWFVERLN 320 (406)
T ss_dssp EEECGGGG-TTSCCEEEEEC-HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhc-CCCCeEEEEEc-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHH
Confidence 27899999 99999999995 44544443322 2234778888888877764221 4556667777777777776
Q ss_pred hcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 166 KAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 166 ~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+.+ .....+..|.++++.++.... .+..+++..|+ ++||.+.|+. ++++||+++. .++++++++
T Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~v~~~~------~~~iRi~~~~~~~~e~i~~~ 389 (406)
T 4adb_A 321 TINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAA-KAGVMVLIAG------GNVVRFAPALNVSEEEVTTG 389 (406)
T ss_dssp HHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHH-HTTEECEESS------TTEEEECCCTTCCHHHHHHH
T ss_pred HHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHH-HCCcEEeecC------CCeEEEECCCCCCHHHHHHH
Confidence 642 111122235677888775321 12346777777 4599999853 5799997643 699999999
Q ss_pred HHHHHHHHHHHH
Q 044773 241 MQRLKAFVDSIT 252 (289)
Q Consensus 241 l~~l~~~l~~~~ 252 (289)
+++|++++++..
T Consensus 390 ~~~l~~~l~~~~ 401 (406)
T 4adb_A 390 LDRFAAACEHFV 401 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=183.18 Aligned_cols=219 Identities=7% Similarity=0.004 Sum_probs=145.2
Q ss_pred CccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++|+++.++|++|. +++.+++++|.++|++||+++|+||+|.+++..|..+ . .+.. +....+.+
T Consensus 221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~-~~~~-----------~~~pdi~t 287 (460)
T 3gju_A 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMF-G-SDHY-----------GIKPDLIT 287 (460)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-H-HHHH-----------TCCCSEEE
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-h-Hhhc-----------CCCCCeee
Confidence 4556555544777776 7788999999999999999999999999876655432 1 1221 11222457
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh---------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK---------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
|||+++ +| +|+||+++++ .+.+.+.. ....+..|++.+.++.++|+.... ++..+..++..+..++.
T Consensus 288 ~sK~l~-gG~~~lg~v~~~~-~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~ 364 (460)
T 3gju_A 288 IAKGLT-SAYAPLSGVIVAD-RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-MDLVTNAGETGAYFRAE 364 (460)
T ss_dssp ECGGGT-TTSSCCEEEEEEH-HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred eehhhc-CCCCCeEEEEECH-HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH
Confidence 999998 66 8999999964 44554431 122344788999988888874322 33355555556666666
Q ss_pred HHHHHHhcC-CceecCCceEEEEEecCccccC-CC----hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cC
Q 044773 160 LVSGLEKAG-ISCLKSNAGLFCWVDMRHLLSS-NT----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NM 232 (289)
Q Consensus 160 l~~~l~~~g-~~~~~~~~g~~~~i~~~~~~~~-~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~ 232 (289)
+.+.+.+++ +....+.| .++++.+...... .. .....+++..++ ++||.+.|+. ..+++||+++ ..
T Consensus 365 l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~~~~ 437 (460)
T 3gju_A 365 LAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDRVFFDASQKIGPQVATALA-ASGVIGRAMP-----QGDILGFAPPLCL 437 (460)
T ss_dssp HHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEECS-----SSCEEEECCCTTC
T ss_pred HHHHHhcCCCeEEEeeee-EEEEEEEccCccccccccchHHHHHHHHHHHH-HCCeEEecCC-----CCCEEEEECCCCC
Confidence 666666653 33344444 4666766543211 00 011235667666 5699999875 2479999975 36
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~~ 252 (289)
+++++++++++|++++++..
T Consensus 438 t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 438 TREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=174.80 Aligned_cols=219 Identities=14% Similarity=0.091 Sum_probs=153.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++|++++|+|| ...+ +++|.++|+++|+++|+|++|+. +.+.+..... . .
T Consensus 155 l~~~l~~~-~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~----~---------~ 215 (407)
T 2dkj_A 155 VRRLALEH-RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP----L---------P 215 (407)
T ss_dssp HHHHHHHH-CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC----T---------T
T ss_pred HHHHHhhc-CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc----c---------c
Confidence 44555532 6899999999998 5566 89999999999999999999986 3333322111 1 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-cc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..++++.|+||.+ +|.|.||++++++.+.+.+.... .+ +..+.....++..+++... ..++++.++++++++
T Consensus 216 -~~di~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~ 290 (407)
T 2dkj_A 216 -YAHVVTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL--QPEFKEYSRLVVENA 290 (407)
T ss_dssp -TCSEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHH
T ss_pred -cccEEEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence 2468899999966 57788999997455555554432 22 2233333334555554321 345788889999999
Q ss_pred HHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC----CCCCCCeEEEEEec-
Q 044773 158 RKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC----HCTEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f----~~~~~~~~Ris~~~- 231 (289)
+++.+.|++.|+++.. +..++++|++++... .+..++...| .++||.+.+|..+ +...++++|++++.
T Consensus 291 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~ 364 (407)
T 2dkj_A 291 KRLAEELARRGYRIVTGGTDNHLFLVDLRPKG-----LTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAI 364 (407)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHH
T ss_pred HHHHHHHHhCCceeecCCCCceEEEEECcccC-----CCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccc
Confidence 9999999988888765 356778889887421 1123566666 5789999998764 22335789999953
Q ss_pred ----CCHHHHHHHHHHHHHHHHH
Q 044773 232 ----MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 232 ----~~~e~l~~~l~~l~~~l~~ 250 (289)
.+++++++++++|++++++
T Consensus 365 ~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 365 TTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999876
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=178.39 Aligned_cols=202 Identities=17% Similarity=0.209 Sum_probs=145.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHH----HcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFIT----EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVH 85 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~----~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i 85 (289)
+++++|++++|+||||.+++ +++|.++|+ ++|+++|+|++|+. +....++ +..+.++
T Consensus 153 ~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~----g~~~~~~------------~~~~~d~ 213 (390)
T 1elu_A 153 PKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDF------------SRLEVDY 213 (390)
T ss_dssp TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCT------------TTSCCSE
T ss_pred CCceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEccccc----CCcCCCh------------hhcCCCE
Confidence 47899999999999999999 899999999 99999999999983 2211121 1235668
Q ss_pred EEecCccccCCCCceEEEEEecCHHHHHHHHhc------------------------cccCCCChHHHHHHHHHhCCchH
Q 044773 86 IVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM------------------------SSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 86 ~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
++.|+||.++ +|.++||++++++.+ +.+... ...++.+.+.+.++..+++....
T Consensus 214 ~~~s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~ 291 (390)
T 1elu_A 214 YAFTGHKWFA-GPAGVGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR 291 (390)
T ss_dssp EEEESSSTTC-CCTTCEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH
T ss_pred EEcccccccc-CCCceEEEEECHHhH-hhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHH
Confidence 8999999553 556699999975443 222210 11233555777766666653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec---CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKA-GISCLK---SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
..++++.+++++++++++.+.|+++ |+++.. +.++++.| +++...+ ..++...|. ++||.+.||.
T Consensus 292 -~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~l~-~~gi~v~~~~-- 360 (390)
T 1elu_A 292 -QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVDSPLG------HRAIVQKLE-EQRIYLRTIA-- 360 (390)
T ss_dssp -HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EECSSSC------HHHHHHHHH-HTTEECEEET--
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcCCCCC------HHHHHHHHH-HCCEEEEecC--
Confidence 2237788899999999999999987 887774 45676654 7753221 245777775 6799999886
Q ss_pred CCCCCCeEEEEEe-cCCHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFA-NMSEDTLKLSMQRLKA 246 (289)
Q Consensus 218 ~~~~~~~~Ris~~-~~~~e~l~~~l~~l~~ 246 (289)
.++++||+++ ..+++++++++++|++
T Consensus 361 ---~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 361 ---DPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp ---TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred ---CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 3579999994 3699999999999865
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=178.60 Aligned_cols=212 Identities=17% Similarity=0.111 Sum_probs=140.8
Q ss_pred CCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++.++|++|.+ ++++++++|.++|+++|+++|+||+|.+++..+... .. +. .+....+.
T Consensus 178 ~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~-~~-----------~~~~~d~~ 244 (395)
T 3nx3_A 178 EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AY-EH-----------AQILPDIM 244 (395)
T ss_dssp TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GG-GG-----------GTCCCSEE
T ss_pred CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hH-Hh-----------cCCCCCEE
Confidence 467787777666666665 788999999999999999999999999875544321 11 11 12223356
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||.++ +|+|+||++++++.+.+.+... ...+..|++.+.++.++++.... +++.+..++..+..++.+.+.+.+
T Consensus 245 t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 245 TSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp EECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999998 6999999999654425555432 22334788888888888764321 222333333344444444444444
Q ss_pred cC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 167 AG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 167 ~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
++ +....+. |.++++.++.... ..++...|+ +.||.+.|+. ++++||+++. .+++++++++++|
T Consensus 323 ~~~~~~~~~~-g~~~~~~~~~~~~------~~~~~~~l~-~~Gi~v~~~~------~~~iRi~~~~~~t~e~i~~~l~~l 388 (395)
T 3nx3_A 323 FDFCKKRKGL-GFMQGLSLDKSVK------VAKVIQKCQ-ENALLLISCG------ENDLRFLPPLILQKEHIDEMSEKL 388 (395)
T ss_dssp CTTEEEEEEE-TTEEEEEECTTSC------HHHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEeE-EEEEEEEeCCcch------HHHHHHHHH-HCCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 43 2233333 4577788775321 245777776 6699999863 5799999754 6999999999999
Q ss_pred HHHHHH
Q 044773 245 KAFVDS 250 (289)
Q Consensus 245 ~~~l~~ 250 (289)
++++++
T Consensus 389 ~~~l~~ 394 (395)
T 3nx3_A 389 RKALKS 394 (395)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=176.70 Aligned_cols=220 Identities=11% Similarity=0.039 Sum_probs=139.3
Q ss_pred CCCccE-EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC-ccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKG-VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~-i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
.+++++ |++++||||||. +..++++|.++|+++|+++|+|++|..+. .+.. ..+...+ +.+++
T Consensus 138 ~~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~~~~~~~~~~~------------~~di~ 202 (374)
T 2aeu_A 138 IDKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARV-RLLFNQPPALKL------------GADLV 202 (374)
T ss_dssp CCTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HHHTTCCCHHHH------------TCSEE
T ss_pred CCCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccc-ccccccCCcccc------------CCcEE
Confidence 357899 999999999997 77899999999999999999999997652 1111 1112222 34588
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHH----HHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLK----QRHRKL 160 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~l 160 (289)
++|+||++ +|+|+||+++++ .+.+.+..... +. ..+++.+.++..+++... .+.+++..+..+ ++++.+
T Consensus 203 ~~S~sK~l--~g~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~l 277 (374)
T 2aeu_A 203 VTSTDKLM--EGPRGGLLAGKK-ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKL 277 (374)
T ss_dssp EEETTSSS--SSCSCEEEEEEH-HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHH
T ss_pred EecCcccc--cCcceEEEEECH-HHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 467999999965 44444443322 22 367788888877776532 111222222222 224556
Q ss_pred HHHHHhc----CCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCH-
Q 044773 161 VSGLEKA----GISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSE- 234 (289)
Q Consensus 161 ~~~l~~~----g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~- 234 (289)
.+.|.+. |+.+. .+.+.++.|.+...... ..+..+++..+++++||.+.||..|. ..++++||+++..+.
T Consensus 278 ~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~~~-~~~~~lRi~~~~~~~~ 353 (374)
T 2aeu_A 278 NKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAGMP-GASKSLRIDLTSRDAE 353 (374)
T ss_dssp HHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSSSC-SSCCSEEEETTSGGGG
T ss_pred HHhhhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCCCC-CCCCeEEEEcCCchHH
Confidence 6666552 55654 45555555554432111 01223466677778899999998773 346789999964222
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 044773 235 -DTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 235 -e~l~~~l~~l~~~l~~~~ 252 (289)
.+++++.+.+++++++..
T Consensus 354 ~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 354 RIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp GSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 236777777777666543
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=173.21 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=143.4
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.++++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.... . ..+.. .+.++++.
T Consensus 142 ~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~---~-~~~~~------------~~~d~~~~ 202 (376)
T 3f0h_A 142 NQNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLAD---P-FNMNE------------CGADVMIT 202 (376)
T ss_dssp TSCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTS---C-CCHHH------------HTCSEEEE
T ss_pred ccCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCc---c-ccccc------------cCccEEEe
Confidence 357899999999999999999 99999999999999999999985322 1 22222 24568899
Q ss_pred cCccccC-CCCceEEEEEecCHHHHHHHHhcc-------------------ccCCCChHHHHHHHHHhCCchHHHH--HH
Q 044773 89 SLSKDLG-LPGFRVGAIYSNDDTVVAAATKMS-------------------SFGLVSSQTQYLLSALLSDKKFAQN--YI 146 (289)
Q Consensus 89 s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~q~~~~~~l~~~~~~~~--~~ 146 (289)
|+||.++ .+| +|++++++ .+.+.+.... ..+..+.....++..+++.. .+ .+
T Consensus 203 s~~K~l~~~~G--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~ 276 (376)
T 3f0h_A 203 GSQKVLACPPG--ISVIVLAP-RGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEI---KKHGGA 276 (376)
T ss_dssp ETTTTTCCCSS--CEEEEECH-HHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHTTHH
T ss_pred cCcccccCCCc--eEEEEECH-HHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH---HHhcCH
Confidence 9999998 455 67888854 4444443210 01223333334444444321 22 36
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 147 SENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
++.++.++++++++.+.|++.|+++.++.....++.-.+... +..++...|.+++||.+.||. +...++++|
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~--~~~~~~~lR 348 (376)
T 3f0h_A 277 DAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTA------NAYDIFLKLKDEYGIWICPNG--GEMKDTIFR 348 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSS------CHHHHHHHHHHHSSEECEECC--GGGTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCC------CHHHHHHHHHHhCCEEEecCc--cccCCCEEE
Confidence 778888999999999999988876665433222221112211 224688888877799999984 233467999
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|+++. ++++++++++++|++++++
T Consensus 349 is~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 349 VGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99953 6999999999999998763
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.56 Aligned_cols=211 Identities=13% Similarity=0.115 Sum_probs=150.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|++ |+|++|.. +....++..+ +.++++.|
T Consensus 137 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~----g~~~~~~~~~------------~~di~~~s 196 (382)
T 4eb5_A 137 DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASV----GQIEVDVEKI------------GADMLTIS 196 (382)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB----TTBCCCHHHH------------TCSEEEEE
T ss_pred CCCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhc----CCcccCcccc------------CCCEEEee
Confidence 46899999999999999999 88999999999999 99999982 2222232222 45688999
Q ss_pred CccccCCCCceEEEEEecCHH-HHHHHH-----hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDT-VVAAAT-----KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~-~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+||.+|.+| +||++++++. +..... .....+..+...+.++..+++.. .+.+++.+++++++++++.+.
T Consensus 197 ~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4eb5_A 197 SNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT---AMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp TGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 999988556 6999987653 211110 01112334556666666666532 345778889999999999999
Q ss_pred HHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------------CC
Q 044773 164 LEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-----------------EP 222 (289)
Q Consensus 164 l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~ 222 (289)
|+++ |+++..+.+ +.++++.++. . +..++...|. ++||.+.||..|.+. .+
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (382)
T 4eb5_A 272 VLKIEESYLNGHPEKRLPNNVNVRFSY-I------EGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAH 343 (382)
T ss_dssp HTTSTTEEECSCSSSBCTTEEEEEETT-S------CHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHT
T ss_pred HhhCCCeEEeCCcccCCCCEEEEEeCC-c------CHHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccC
Confidence 9987 777766542 3356666652 1 1245777775 679999999865432 25
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++||+++. +++++++.++++|++++++...
T Consensus 344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 344 GTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 799999974 6899999999999999887654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=180.56 Aligned_cols=211 Identities=17% Similarity=0.199 Sum_probs=149.3
Q ss_pred hHHHhhhC---CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH---LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++.++ +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... ..++..+
T Consensus 135 l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~~--------- 198 (371)
T 2e7j_A 135 FAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKEI--------- 198 (371)
T ss_dssp HHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----CCCHHHH---------
T ss_pred HHHHHHhhcccCCeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC----CCChhhc---------
Confidence 34555432 57899999999999999999 79999999999999999999986422 1233332
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHH-HHhccc---------cCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA-ATKMSS---------FGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~-~~~~~~---------~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+.+++++|+||.++ ++.|+||++++++. .+. +..... .+..+.....++..+++.. .. +
T Consensus 199 ---~~di~~~s~sK~~~-~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~---~ 267 (371)
T 2e7j_A 199 ---GADFIVGSGHKSMA-ASGPIGVMGMKEEW-AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV---RE---R 267 (371)
T ss_dssp ---TCSEEEEEHHHHSS-CCSSCEEEEECTTT-TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH---HH---H
T ss_pred ---CCCEEEecCCcCCC-CCCCcEEEEEechh-hhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH---HH---H
Confidence 34588999999998 44599999997654 332 332221 2334445555555555421 22 5
Q ss_pred HHHHH--HHHHHHHHHHHHhcCCceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----C
Q 044773 149 NKKRL--KQRHRKLVSGLEKAGISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC----T 220 (289)
Q Consensus 149 ~~~~~--~~~~~~l~~~l~~~g~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~ 220 (289)
..+++ +++++++.+.|++.|+++..+. .+.++|++++ +..++...|. ++||.+.| ..+.. .
T Consensus 268 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~ 336 (371)
T 2e7j_A 268 IKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---------VLYEISKKAK-GGRFFLYR-ELKSRKIHGI 336 (371)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---------HHHHHHHHSS-SGGGHHHH-HHHHTTEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---------CHHHHHHHHH-HCCEEEEe-ccccccccCC
Confidence 56667 8888899999988888887663 3457888875 1245677666 77999988 43321 1
Q ss_pred CCCeEE-EEEec--CCHHHHHHHHHHHHHHHHH
Q 044773 221 EPGWFR-VCFAN--MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 221 ~~~~~R-is~~~--~~~e~l~~~l~~l~~~l~~ 250 (289)
.++++| |+++. ++++++++++++|++++++
T Consensus 337 ~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 337 KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 257899 99975 5899999999999998765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-21 Score=172.95 Aligned_cols=209 Identities=17% Similarity=0.175 Sum_probs=148.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....++..+ +.++++.|
T Consensus 168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~----~~~~~~~~~------------~~di~~~s 228 (420)
T 1t3i_A 168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAP----HYPLDVQLI------------DCDWLVAS 228 (420)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT----TSCCCHHHH------------TCSEEEEE
T ss_pred CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccC----CccCchhhc------------CCCEEEEe
Confidence 46899999999999999999 899999999999999999999843 111233222 45689999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc---------------------c-CCCChHHHHHHHH-HhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS---------------------F-GLVSSQTQYLLSA-LLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~---------------------~-~~~~~~~q~~~~~-~l~~~~~~~~~~ 146 (289)
+||.+|.+| +||++++ +.+.+.+..... + ...+++.+.++.. +++... ...+
T Consensus 229 ~sK~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~ 303 (420)
T 1t3i_A 229 GHKMCAPTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--DLGM 303 (420)
T ss_dssp GGGTTSCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCH
T ss_pred hhhhcCCCc--eEEEEEc-hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH--HhHH
Confidence 999888667 8999996 444444432211 1 1244455554333 443211 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCC------ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLKSN------AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~------~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
++..++++++++++.+.|++. |+++..+. ++++. +.++. . +..++...| .++||.+.||..|..
T Consensus 304 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~~~~~-~------~~~~~~~~l-~~~gi~v~~~~~~~~ 374 (420)
T 1t3i_A 304 ENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALAS-FNVAG-L------HASDVATMV-DQDGIAIRSGHHCTQ 374 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEE-EEETT-B------CHHHHHHHH-HTTTEECBCSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEE-EEECC-C------CHHHHHHHH-HHCCeEEeeccccch
Confidence 778888999999999999987 88877664 55554 45653 1 123466554 577999999975532
Q ss_pred C-----C-CCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 220 T-----E-PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~-----~-~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
. + ++++||+++. +++++++.++++|+++++..
T Consensus 375 ~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 375 PLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 2 5789999975 69999999999999988764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=180.74 Aligned_cols=199 Identities=17% Similarity=0.128 Sum_probs=141.1
Q ss_pred EEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 14 GVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 14 ~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
.+++++| |||||. +++.+++++|.++|+++|+++|+||+|.++.+.+... ..+... ...+ +.|||
T Consensus 214 ~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~--~~~~~~--------~~~d---~~t~s 280 (419)
T 2eo5_A 214 AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF--AIENFN--------TVPD---VITLA 280 (419)
T ss_dssp EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--GGGGGT--------CCCS---EEEEC
T ss_pred EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchh--hHHhcC--------CCCC---EEEec
Confidence 3466778 567895 7789999999999999999999999999876554321 112211 1122 34899
Q ss_pred cccCCCC-ceEEEEEecCHHHHHHHH-hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 92 KDLGLPG-FRVGAIYSNDDTVVAAAT-KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 92 K~~g~~G-~r~G~i~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|.+| +| +|+||++++++.+ .. . .....+..|++.+.++.++++.. .+ ..++++++++++.+.|+++ +
T Consensus 281 K~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~---~~----~~~~~~~~~~~l~~~L~~~-~ 349 (419)
T 2eo5_A 281 KALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIV---KD----LLPHVNEIGKIFAEELQGL-A 349 (419)
T ss_dssp GGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHTTS-S
T ss_pred cccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHh-h
Confidence 9999 69 9999999976644 32 2 22233447889999888888642 22 6788889999999999876 4
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
....+.+ .++++++.... .... ++..|+ ++||.+.|+. .+++||+++. .+++++++++++|++++
T Consensus 350 ~~~~~~g-~~~~i~~~~~~-----~~~~-~~~~l~-~~Gv~v~~~~------~~~lRis~~~~~t~e~i~~~l~~l~~~l 415 (419)
T 2eo5_A 350 DDVRGIG-LAWGLEYNEKK-----VRDR-IIGESF-KRGLLLLPAG------RSAIRVIPPLVISEEEAKQGLDILKKVI 415 (419)
T ss_dssp SEEEEET-TEEEEECSCHH-----HHHH-HHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hheEeee-EEEEEEEecCc-----cHHH-HHHHHH-HCCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4444444 56677874210 1124 677776 7799999863 4689998853 69999999999999987
Q ss_pred HH
Q 044773 249 DS 250 (289)
Q Consensus 249 ~~ 250 (289)
++
T Consensus 416 ~~ 417 (419)
T 2eo5_A 416 KV 417 (419)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=173.93 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=146.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+ +|+|++|+. +....++... +.++++.|
T Consensus 137 ~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~----~~~~~~~~~~------------~~d~~~~s 196 (382)
T 4hvk_A 137 DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASV----GQIEVDVEKI------------GADMLTIS 196 (382)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB----TTBCCCHHHH------------TCSEEEEE
T ss_pred cCceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc----CCCCCCchhc------------CCCEEEEe
Confidence 46899999999999999999 8899999999999 999999973 2222222222 45689999
Q ss_pred CccccCCCCceEEEEEecCHHHHH-HHH-----hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVA-AAT-----KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~-~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
+||.+|.+| +|+++++++.... ... .....+..+...+.++..++.. +.+++++.+++++++++++.+.
T Consensus 197 ~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4hvk_A 197 SNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp SGGGTSCTT--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCc--eEEEEEcCccCcCcccccCCCcCccccCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHH
Confidence 999887556 6777775543100 000 0011222455666666666652 2556788999999999999999
Q ss_pred HHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC-----------------C
Q 044773 164 LEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE-----------------P 222 (289)
Q Consensus 164 l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~ 222 (289)
|+++ |+++..+.+ +.++++.++.. +..++...|. ++||.+.+|..|+... +
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (382)
T 4hvk_A 272 VLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAH 343 (382)
T ss_dssp HTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHHHHHHHH-HTTCBCBCC--------CCCHHHHHTTCCHHHHH
T ss_pred HhcCCCeEEeCCccccCCCEEEEEECCC-------CHHHHHHHHH-HCCEEEeeCCccCCCCCcchHHHHHcCCChhhcC
Confidence 9987 777766553 22455555421 1235666665 6799999998887543 5
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++||+++. ++++++++++++|++++++..+
T Consensus 344 ~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 344 GTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 899999974 6899999999999999988765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=181.11 Aligned_cols=225 Identities=14% Similarity=0.126 Sum_probs=142.5
Q ss_pred hHHHhh-h-CCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQK-R-HLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~-~-~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++ . .+++++|++++++|++|.++ +++++++|.++|++||+++|+||+|.++...+... ..+..
T Consensus 190 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~--~~~~~-------- 259 (439)
T 3dxv_A 190 LTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH--CFEHE-------- 259 (439)
T ss_dssp HHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS--GGGGT--------
T ss_pred HHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh--HHHhc--------
Confidence 455552 2 23567767766677777765 55569999999999999999999999765544321 11221
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+....+.||||++| +|+|+||++++ +.+.+.+... ...+ .+++.+.++.++++.... .+..++++++
T Consensus 260 ---~~~~di~s~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-----~~~~~~~~~~ 328 (439)
T 3dxv_A 260 ---GFVPDILVLGKGLG-GGLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-----DDLPAMAERK 328 (439)
T ss_dssp ---TCCCSEEEECGGGG-TTSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-----TTHHHHHHHH
T ss_pred ---CCCCCEEEEcchhc-CCcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-----cCHHHHHHHH
Confidence 11112339999999 79999999995 4444444332 2234 778888887777764321 2233344444
Q ss_pred HHHHHHHHHh----cC-CceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 157 HRKLVSGLEK----AG-ISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 157 ~~~l~~~l~~----~g-~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
.+++.+.|.+ ++ +....+. |.++++++...... .......+++..+++ .||.+.|+..+ .+++||++
T Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~ 402 (439)
T 3dxv_A 329 GRLLRDGLSELAKRHPLIGDIRGR-GLACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVGMN----GNVLEFTP 402 (439)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEESTT----SCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCCHHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEC
Confidence 4444444443 33 2333344 45666766321100 011233567777774 59999998533 46999998
Q ss_pred ec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 230 AN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 230 ~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+. .+++++++++++|++++++..+
T Consensus 403 ~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 403 PLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 54 6999999999999999987654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=172.54 Aligned_cols=204 Identities=14% Similarity=0.105 Sum_probs=148.2
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK-NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
..+++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|..... . .. ..+.+++
T Consensus 127 ~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~---~-~~--------------~~~~d~~ 185 (362)
T 3ffr_A 127 VPADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYP---K-FD--------------WTKIDSV 185 (362)
T ss_dssp CCTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSS---C-CC--------------TTSCSEE
T ss_pred ccCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCc---c-cC--------------hhHCcEE
Confidence 4568999999999999999999 88899999999 999999999974311 1 11 1124588
Q ss_pred EecCccccC-CCCceEEEEEecCHHHHHHHHhccc-----------------------cCCCChHHHHHHHHHhCCchHH
Q 044773 87 VYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSS-----------------------FGLVSSQTQYLLSALLSDKKFA 142 (289)
Q Consensus 87 i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~-----------------------~~~~~~~~q~~~~~~l~~~~~~ 142 (289)
+.|+||+++ .+| +|+++++++.+ +.+..... .++.+...+.++..+++...
T Consensus 186 ~~s~~K~~~~~~G--~g~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-- 260 (362)
T 3ffr_A 186 FFSVQKCFGLPAG--LGVWILNDRVI-EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-- 260 (362)
T ss_dssp EEETTSTTCCCSC--CEEEEEEHHHH-HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH--
T ss_pred EEecccccCCCCc--eEEEEECHHHH-HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH--
Confidence 999999998 667 57788865443 33322211 34456666766666665321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
...+++..++++++++++.+.|+++ |+++..+ .++.++|+.++. + ..++...|.++ ||.+.||..+
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~l~~~-gi~~~~g~~~ 331 (362)
T 3ffr_A 261 QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--L------PGEINKILEPF-DMAVGAGYGS 331 (362)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--C------HHHHHHHHGGG-TEEEEECSGG
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--C------HHHHHHHHHHC-CeEEecCccc
Confidence 2226788889999999999999998 8877653 235577777765 1 24677777755 9999998543
Q ss_pred CCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 218 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
..++++||+++. ++++++++++++|++++
T Consensus 332 --~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 332 --KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp --GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred --cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346899999964 68999999999998764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=178.37 Aligned_cols=216 Identities=16% Similarity=0.143 Sum_probs=146.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++. +++++|++++|+|++| .+++.+++++|.++|+++|+++|+||+|.++.+.+..+ . .+... .
T Consensus 194 le~~i~--~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~-~~~~~--------~ 261 (420)
T 2pb2_A 194 VKAVMD--DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-A-YMHYG--------V 261 (420)
T ss_dssp HHHHCC--TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-H-HHHHT--------C
T ss_pred HHHHhc--cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-H-HHhcC--------C
Confidence 344444 4688988877788888 46999999999999999999999999998775555422 1 12211 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
... + .||||.+| +|+|+||++++++ +.+.+.. ....+..|++.+.++.++++.... ++..++++++++
T Consensus 262 ~~d-i--it~sK~l~-~G~~iG~~~~~~~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-----~~~~~~~~~~~~ 331 (420)
T 2pb2_A 262 TPD-I--LTSAKALG-GGFPVSAMLTTQE-IASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-----PEVLQGIHTKRQ 331 (420)
T ss_dssp CCS-E--EEECGGGG-TTSCCEEEEECHH-HHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----HHHHHHHHHHHH
T ss_pred CCC-e--EEeccccc-CCCceEEEEEhHH-HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 112 2 27899999 8999999999654 4443332 122234788888888777764221 244556666777
Q ss_pred HHHHHHHhc--CC---ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cC
Q 044773 159 KLVSGLEKA--GI---SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NM 232 (289)
Q Consensus 159 ~l~~~l~~~--g~---~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~ 232 (289)
++.+.|++. ++ ....+. |.+++++++.... .+..++...|+ ++||.+.|+. ++++||+++ ..
T Consensus 332 ~l~~~L~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~----~~~~~l~~~l~-~~Gi~v~~~~------~~~iRl~~~~~~ 399 (420)
T 2pb2_A 332 QFVQHLQAIDEQFDIFSDIRGM-GLLIGAELKPKYK----GRARDFLYAGA-EAGVMVLNAG------ADVMRFAPSLVV 399 (420)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEE-TTEEEEEECGGGT----TCHHHHHHHHH-HTTEECEESS------TTEEEECCCTTC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-ceEEEEEECCCch----HHHHHHHHHHH-HCCCEEEeCC------CCEEEEECCCCC
Confidence 777777654 22 223344 4567788764321 12246777777 4799999863 468999985 36
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++++|++++++.
T Consensus 400 t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 400 EEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=177.19 Aligned_cols=210 Identities=15% Similarity=0.134 Sum_probs=145.5
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
++++. +++++|++++++||||.++ +.+++++|.++|+++|+++|+||+|.++.+.+... ++ +... ..
T Consensus 179 ~~~i~--~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~-~~-~~~~--------~~ 246 (395)
T 1vef_A 179 KRAVD--EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AF-EHFG--------IV 246 (395)
T ss_dssp HHHCC--TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-TH-HHHT--------CC
T ss_pred HHHhc--cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh-Hh-hhcC--------CC
Confidence 44443 4678876655589999765 78899999999999999999999999754433321 11 1211 11
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.. +.||||.++ +|+|+||++++++ +.+.+.. ....+..+++.+.++..+++.. .. .+..+++++++++
T Consensus 247 ~d---~~s~sK~~~-~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~---~~--~~~~~~~~~~~~~ 316 (395)
T 1vef_A 247 PD---ILTLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---ER--TRLWERAAELGPW 316 (395)
T ss_dssp CS---EEEECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--HTTHHHHHHHHHH
T ss_pred CC---EEEEccccc-CCCceEEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHH
Confidence 11 228899999 5999999999654 4444333 1222336778887777777642 22 3466788888899
Q ss_pred HHHHHHhcCCce--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHH
Q 044773 160 LVSGLEKAGISC--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDT 236 (289)
Q Consensus 160 l~~~l~~~g~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~ 236 (289)
+.+.|++.+.++ ..+..|.++|++++.. . .++...|++++||.+.|+ +++++||+++ ..++++
T Consensus 317 l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~------~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~~~ 382 (395)
T 1vef_A 317 FMEKLRAIPSPKIREVRGMGLMVGLELKEK--A------APYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKED 382 (395)
T ss_dssp HHHHHHTSCCTTEEEEEEETTEEEEEESSC--S------HHHHHHHHHHHCEECEES------STTEEEECCCTTCCHHH
T ss_pred HHHHHHHhhcCceEEEEEEEEEEEEEEcCh--H------HHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCHHH
Confidence 999998875432 1233456788888642 1 457777774669999986 2579999985 369999
Q ss_pred HHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFV 248 (289)
Q Consensus 237 l~~~l~~l~~~l 248 (289)
+++++++|++++
T Consensus 383 i~~~~~~l~~~l 394 (395)
T 1vef_A 383 LERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=177.85 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=143.4
Q ss_pred CCccEEEEeCCCCCCc--cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLG--TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG--~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++..++++++|.|++| .+.+.+.+++|.++|++||+++|+||+|.++.+.|... .. +.. +.+..+
T Consensus 223 ~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-a~-~~~-----------~~~pdi 289 (453)
T 4ffc_A 223 AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF-AS-EHE-----------GIVPDI 289 (453)
T ss_dssp GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-TH-HHH-----------TCCCSE
T ss_pred CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc-hh-hhc-----------CCCcch
Confidence 3456778888977776 55588899999999999999999999999876655421 11 221 222335
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.||||+++ +|+|+||++++ +.+.+.+... ...+..|++.+.++.++++.... ++..+..++..+..++.+.+.+.
T Consensus 290 ~t~sK~~~-~G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~ 366 (453)
T 4ffc_A 290 VTMAKGIA-GGMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVTSRLSALAE 366 (453)
T ss_dssp EEECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhc-CCcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 68999998 59999999995 4455444322 22344788999888888774321 12233333333333333444444
Q ss_pred hcC-CceecCCceEEEEEecCccc-cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 166 KAG-ISCLKSNAGLFCWVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 166 ~~g-~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
+++ +....+. |.++|+.+.... .........+++..++ ++||.+.|+..|+ +++||+++. .++++++++++
T Consensus 367 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~----~~iRi~~~~~~t~e~i~~~l~ 440 (453)
T 4ffc_A 367 EVDIIGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEAL-SQGVLILTCGTFG----NVIRLLPPLVIGDDLLDEGIT 440 (453)
T ss_dssp HCSSEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECCEECTTS----CEEEECCCTTCCHHHHHHHHH
T ss_pred hCCCeEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHH-hCCCEEecCCCCC----CEEEEECCCCCCHHHHHHHHH
Confidence 443 2223333 457777764311 0111123345777766 6699999986553 589999854 69999999999
Q ss_pred HHHHHHHHHH
Q 044773 243 RLKAFVDSIT 252 (289)
Q Consensus 243 ~l~~~l~~~~ 252 (289)
+|.+++++..
T Consensus 441 ~l~~~l~~~~ 450 (453)
T 4ffc_A 441 ALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=179.77 Aligned_cols=218 Identities=11% Similarity=0.089 Sum_probs=138.1
Q ss_pred CccEEEEeCCCCCCc--cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLG--TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG--~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+..++++++|.|++| .+.+++.+++|.++|++||+++|+||+|.++.+.+... . .+.. +....+.
T Consensus 226 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~-~~~~-----------~~~pdi~ 292 (451)
T 3oks_A 226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMF-A-CEHE-----------GIDPDLI 292 (451)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-G-GGGG-----------TCCCSEE
T ss_pred CCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccch-h-hhhc-----------CCCCCee
Confidence 455667788866655 44577889999999999999999999999876655421 1 1111 2222244
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||||+++ +|+|+||++++ +.+.+.+... ...+..|++.+.++.++++.... ++..+..++..+..++.+.+.+.+
T Consensus 293 t~sK~l~-~G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 369 (451)
T 3oks_A 293 VTAKGIA-GGLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAE 369 (451)
T ss_dssp EECGGGG-TTSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhhhh-CCcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999998 69999999995 4555444322 22344788999888888764321 122233333333333334444444
Q ss_pred cC-CceecCCceEEEEEecCccc-cCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AG-ISCLKSNAGLFCWVDMRHLL-SSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g-~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
++ +....+. |.++|+.+.... .........+++..++ ++||.+.|+..|+ +++||+++. .+++++++++++
T Consensus 370 ~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~----~~iRi~~~~~~t~e~i~~~l~~ 443 (451)
T 3oks_A 370 DDRIGDVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAH-AAGVIVLSCGTYG----NVVRFLPPLSIGDDLLNEGLDV 443 (451)
T ss_dssp CTTEEEEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHH-HTTEECEEECTTS----CEEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHH-hCCcEEecCCCCC----CEEEEECCCCCCHHHHHHHHHH
Confidence 43 2223333 457777764311 0011123345777766 6699999986654 589999854 699999999999
Q ss_pred HHHHHHH
Q 044773 244 LKAFVDS 250 (289)
Q Consensus 244 l~~~l~~ 250 (289)
|++++++
T Consensus 444 l~~~l~~ 450 (451)
T 3oks_A 444 LEEVLRG 450 (451)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998763
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=170.43 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=151.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++... ++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|+.. ....++.
T Consensus 129 l~~~l~~~-~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~----~~~~~~~------------ 188 (385)
T 2bkw_A 129 ITEKLSQN-SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIG----CEEFEFD------------ 188 (385)
T ss_dssp HHHHHHHS-CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTT----TSCCCTT------------
T ss_pred HHHHHhcC-CCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccC----Ccccccc------------
Confidence 45555542 6899999999999999999 88999999999 9999999999732 1111211
Q ss_pred CCCceEEEecCccccC-CCCceEEEEEecCHHHHHHH----------------------Hhccc-----cCCCChHHHHH
Q 044773 80 VWNRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAA----------------------TKMSS-----FGLVSSQTQYL 131 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~----------------------~~~~~-----~~~~~~~~q~~ 131 (289)
..+.++++.|+||.++ .+| +||++++++.+.+.+ ..+.. .+..+...+.+
T Consensus 189 ~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 266 (385)
T 2bkw_A 189 EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINS 266 (385)
T ss_dssp TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHH
T ss_pred ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHH
Confidence 2245688999999775 456 599999665443121 01111 13356666666
Q ss_pred HHHHhCCchHHHHH-HHHHHHHHHHHHHHHHHHH-HhcCCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHH
Q 044773 132 LSALLSDKKFAQNY-ISENKKRLKQRHRKLVSGL-EKAGISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIV 204 (289)
Q Consensus 132 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll 204 (289)
+..+++.. .++ +++.+++++++++++.+.| ++.|+++..++ .+.++|+.+++ ..++...|.
T Consensus 267 ~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~ 334 (385)
T 2bkw_A 267 LDVALKEI---LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---------PPDVIAFLK 334 (385)
T ss_dssp HHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---------HHHHHHHHH
T ss_pred HHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC---------HHHHHHHHH
Confidence 66666532 333 6777888999999999999 88788776532 46678888763 145777775
Q ss_pred HhcCeEEeCCCCCCCCCCCeEEEE-Ee----cCCHHHHHHHHHHHHHHHHH
Q 044773 205 YDVKLNISPGSSCHCTEPGWFRVC-FA----NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 205 ~~~gi~v~pg~~f~~~~~~~~Ris-~~----~~~~e~l~~~l~~l~~~l~~ 250 (289)
++||.+.+|..+. ..++++||+ ++ .++++++++++++|++++++
T Consensus 335 -~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 335 -SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp -HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred -HCCeEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 6799999987653 245799999 66 25899999999999987643
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=176.08 Aligned_cols=213 Identities=15% Similarity=0.130 Sum_probs=143.2
Q ss_pred hHHHhhhC-CCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH-LKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
++++++.+ +++++ ++++| +||||. +++.+++++|.++|+++|+++|+||+|.++.+.+... . .+...
T Consensus 194 l~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~-~~~~~------ 264 (429)
T 1s0a_A 194 FARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-A-CEHAE------ 264 (429)
T ss_dssp HHHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G-GGGGT------
T ss_pred HHHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-H-hhhcC------
Confidence 34555532 24555 55566 599995 6688999999999999999999999999865544321 1 11111
Q ss_pred CCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-------cccCCCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-------SSFGLVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
... .+.||||.++ +| +|+||+++++ .+.+.+... ...+..|++.+.++.++++... + .+.
T Consensus 265 --~~~---d~~t~sK~l~-~G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~---~--~~~ 332 (429)
T 1s0a_A 265 --IAP---DILCLGKALT-GGTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE---S--GDW 332 (429)
T ss_dssp --CCC---SEEEECGGGG-TSSSCCEEEEECH-HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH---T--CHH
T ss_pred --CCC---CEEEeccccc-CCCccceEEEeCH-HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH---h--CCH
Confidence 111 1347999998 79 9999999965 445555442 1233367888888877776321 1 133
Q ss_pred HHHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 150 KKRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
.++++++++++.+.|+++ ++....+.+ .++|++++...+ ..++...|+ ++||.+.|+ .+++
T Consensus 333 ~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~~~------~~~l~~~l~-~~Gi~v~~~-------~~~i 397 (429)
T 1s0a_A 333 QQQVADIEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPVN------MAALQKFFV-EQGVWIRPF-------GKLI 397 (429)
T ss_dssp HHHHHHHHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCBC------HHHHHHHHH-HTTEECCCB-------TTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCccc------HHHHHHHHH-HCCCEEecc-------CCEE
Confidence 456667777788888764 233333444 578888765322 245777777 679999873 2589
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
||+++. .+++++++++++|++++++
T Consensus 398 Ris~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 398 YLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999753 6999999999999988654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=173.28 Aligned_cols=210 Identities=12% Similarity=0.100 Sum_probs=140.0
Q ss_pred CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC--ccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGT--VFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+++++|++++||||| |.+++.+++++|+++|+++|+++|+|++|... ...+ .+...+.. ..+ ++
T Consensus 134 ~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~~--------~~d--~~ 200 (357)
T 3lws_A 134 PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYE---KTAAEIAG--------LFD--SI 200 (357)
T ss_dssp CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT---CCHHHHHT--------TSS--EE
T ss_pred cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcC---CChHHHHh--------cCC--EE
Confidence 458999999999998 99999999999999999999999999998621 1112 22333321 112 44
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhccc-cC---CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FG---LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+.|+||+++.++. ||++++ +.+.+.+..... +. ..+.+.+.++...++ .+.+.. +.+.++++++.+
T Consensus 201 ~~s~sK~~~~~~g--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~-~~~~~~~~~l~~ 270 (357)
T 3lws_A 201 YISFYKGLGGIAG--AILAGP-AAFCQTARIWKRRYGGDLISLYPYIVSADYYYE------LRKDRM-GQYYEQAKQLAE 270 (357)
T ss_dssp EEESSSTTCCSSC--EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH------HHTTCH-HHHHHHHHHHHH
T ss_pred EEeccccCCCCce--EEEEcC-HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHH
Confidence 7899999943432 999985 445444443221 11 122233322223332 222333 335777888999
Q ss_pred HHHhc-CCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec----CCHHH
Q 044773 163 GLEKA-GISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN----MSEDT 236 (289)
Q Consensus 163 ~l~~~-g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~----~~~e~ 236 (289)
.|+++ |+++. .+.+++++|++++.... .+..++...| .++||.+.||..+. ++..++|++++. .+.++
T Consensus 271 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l-~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~ 344 (357)
T 3lws_A 271 QFNALPGVHTTPEVPVSNMFHLHFDGQAA----DISPKLEQVQ-EETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQT 344 (357)
T ss_dssp HHHTSTTEEEESSSCSSSEEEEEEESCHH----HHHHHHHHHH-HHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHH
T ss_pred HHHhCCCCeeccCCCcceEEEEEecCChH----HHHHHHHHHH-HhcCeEEecccccC-CCceEEEEEecchhhhcCHHH
Confidence 99988 88873 56677889999875310 1123465555 47799999997665 355699999852 47899
Q ss_pred HHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFV 248 (289)
Q Consensus 237 l~~~l~~l~~~l 248 (289)
+++++++|.+++
T Consensus 345 l~~al~~l~~al 356 (357)
T 3lws_A 345 RDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=175.42 Aligned_cols=209 Identities=14% Similarity=0.168 Sum_probs=147.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.. ....... ..+.++++.|
T Consensus 162 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~----~~~~~~~------------~~~~di~~~s 222 (423)
T 3lvm_A 162 DDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVG----KLPIDLS------------QLKVDLMSFS 222 (423)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT----TSCCCTT------------TSCCSEEEEE
T ss_pred CCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcC----CCCcChh------------hcCCCEEEec
Confidence 46899999999999999999 888999999999999999999742 1111111 2245688999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc---------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM---------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
+||.+|.+| +||++++++.... +... ...+..+...+.++..++... ..++++.++.++++++++
T Consensus 223 ~sK~~g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l 296 (423)
T 3lvm_A 223 GHKIYGPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA---KEEMATEMERLRGLRNRL 296 (423)
T ss_dssp STTTTSCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 999887666 8999997543322 2111 112334556666665665532 444788899999999999
Q ss_pred HHHHHhc-CCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC---------------
Q 044773 161 VSGLEKA-GISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--------------- 221 (289)
Q Consensus 161 ~~~l~~~-g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--------------- 221 (289)
.+.|+++ |+++..+.+ +.++++.+... +..++...|. + |.+.+|..|.+..
T Consensus 297 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~-~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 297 WNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMALK-D--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp HHHHTTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHHTT-T--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred HHHHhcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHHHh-h--heeccCccccCCCccccHHHHHhCCCcc
Confidence 9999888 888776653 22344444321 1234666554 4 9999998775421
Q ss_pred --CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 222 --PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 222 --~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++++||+++. ++++++++++++|++++++..+
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4789999974 6899999999999999988765
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=169.84 Aligned_cols=213 Identities=17% Similarity=0.120 Sum_probs=141.3
Q ss_pred CCCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.+++++|+++|||||+ |.+++.+++++|+++|+++|+++|+|++|...... ....+...+.. ..++++
T Consensus 135 ~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~~~~~----------~~d~~~ 203 (359)
T 3pj0_A 135 REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITP-FYQKSAEEICA----------LFDSVY 203 (359)
T ss_dssp SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHH-HHTCCHHHHHT----------TCSEEE
T ss_pred cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchh-hhCCCHHHhhc----------cCCEEE
Confidence 4579999999999998 79999999999999999999999999998643211 11112333321 223556
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhcc-ccC-C--CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFG-L--VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~-~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
.|+||.++.++ . ||++++ +.+.+.+.... .+. . .......+....+ ++.. +..+.+.++++++.+.
T Consensus 204 ~s~sK~~~~~~-g-g~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l------~~~~-~~~~~~~~~~~~l~~~ 273 (359)
T 3pj0_A 204 VSFYKGIGGIA-G-AILAGN-DDFVQEAKIWKRRYGGDLISLYPYILSADYYF------EKRI-GKMAEYFEAAKGLAER 273 (359)
T ss_dssp EESSSTTCCSS-C-EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHG-GGHHHHHHHHHHHHHH
T ss_pred EeccccCCCcc-e-EEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH------HHHH-HHhHHHHHHHHHHHHH
Confidence 79999997553 2 777774 55555554321 111 1 1222222222222 2222 3334567888899999
Q ss_pred HHhc-CCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec----CCHHHH
Q 044773 164 LEKA-GISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN----MSEDTL 237 (289)
Q Consensus 164 l~~~-g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~----~~~e~l 237 (289)
|+++ |+++. .+..+.++|++++.... .+..++...| .++||.+.||..|+..+.+++|++++. .+.+++
T Consensus 274 L~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l 348 (359)
T 3pj0_A 274 FNSCSGVKTVPEVPVSNMFHVYFENSAD----EIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNL 348 (359)
T ss_dssp HHTSTTEEEESSSCSSSEEEEEESSCHH----HHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHH
T ss_pred HhhCCCceeeccCCcceEEEEEecCccc----hhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHH
Confidence 9988 88875 45666778887764211 1223455555 467999999988876666799998852 478999
Q ss_pred HHHHHHHHHH
Q 044773 238 KLSMQRLKAF 247 (289)
Q Consensus 238 ~~~l~~l~~~ 247 (289)
++++++|.++
T Consensus 349 ~~~l~~l~~~ 358 (359)
T 3pj0_A 349 ELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999775
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=177.77 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=142.3
Q ss_pred hHHHhhhC-CCccEEEEeCCC-CCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPS-NPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~-NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+|+++..+ +++++|+++.++ |++| .+++++++++|.++|++||+++|+||+|.++++.|..+ . .+..
T Consensus 200 le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-a-~~~~-------- 269 (448)
T 3dod_A 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A-CEHE-------- 269 (448)
T ss_dssp HHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-G-GGGG--------
T ss_pred HHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh-h-hhhc--------
Confidence 45555532 245555555445 7877 56788899999999999999999999999876655432 1 1111
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh-------c--cccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK-------M--SSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~-------~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+....+.+|||+++ +| +|+||++++ +.+.+.+.. . ...+..|++.+.++.++|+.... ++..+.
T Consensus 270 ---~~~~di~t~sK~l~-~G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~ 343 (448)
T 3dod_A 270 ---NVQPDLMAAGKGIT-GGYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES-ENIVEQ 343 (448)
T ss_dssp ---TCCCSEEEECGGGG-TTSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred ---CCCCCEEEeccccc-CCcCceEEEEEC-HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc-ccHHHH
Confidence 12222557999998 69 699999995 455555443 2 12334788888888888864321 222333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCC-Ch----hhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSN-TF----EAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~-~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.++..+..++.+.+ +.+++.....+..|.++|+.+....... .+ ....+++..++ +.||.+.|+ .+
T Consensus 344 ~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-------~~ 414 (448)
T 3dod_A 344 VAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGMLTRPL-------GD 414 (448)
T ss_dssp HHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECCEE-------TT
T ss_pred HHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCcEEecc-------CC
Confidence 33333343444444 4443322222223457778876532210 00 00245777777 559999886 25
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
++||+++. .+++++++++++|++++++..
T Consensus 415 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 415 VIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89998743 699999999999999998754
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=171.02 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=144.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.. +....++..+ +.++++.|
T Consensus 164 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~------------~~d~~~~s 224 (406)
T 3cai_A 164 KSTRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA----PYRLLDIRET------------DADVVTVN 224 (406)
T ss_dssp TTEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT----TTCCCCHHHH------------CCSEEEEE
T ss_pred CCceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEccccc----CCCCCCchhc------------CCCEEEee
Confidence 47899999999999999999 88999999999999999999983 2222233222 45688999
Q ss_pred CccccCCCCceEE-EEEecCHHHHHHHHhccc-----------cCCCChHHHHHHHHHhCCch------------HHHHH
Q 044773 90 LSKDLGLPGFRVG-AIYSNDDTVVAAATKMSS-----------FGLVSSQTQYLLSALLSDKK------------FAQNY 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G-~i~~~~~~~~~~~~~~~~-----------~~~~~~~~q~~~~~~l~~~~------------~~~~~ 145 (289)
+||.+| ++ +| |+++++ .+.+.+..... .++.+...+.++..+++... .+..+
T Consensus 225 ~~K~~g-~~--~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 300 (406)
T 3cai_A 225 AHAWGG-PP--IGAMVFRDP-SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVS 300 (406)
T ss_dssp GGGGTS-CS--CEEEEESCH-HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHH
T ss_pred hhhhcC-CC--cCeEEEEeh-HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhh
Confidence 999887 65 89 999964 44433332211 23345555545444443211 01235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC------
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS------ 215 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~------ 215 (289)
+++.+++++++++++.+.|++. |+++..+. ++ ++++.++. . +..++...|. ++||.+.+|.
T Consensus 301 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~-~------~~~~~~~~L~-~~gi~v~~g~~~~~~~ 371 (406)
T 3cai_A 301 MQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHK-V------PADRVVQRLA-DNGILAIANTGSRVLD 371 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETT-B------CHHHHHHHHH-HTTEECEECCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECC-c------CHHHHHHHHH-HCCcEEecCChHHHHH
Confidence 7888899999999999999987 77776653 44 56677653 1 1245777665 6799999987
Q ss_pred CCCCC-CCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 216 SCHCT-EPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 216 ~f~~~-~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
.++.. ..+++||+++. +++++++.++++|++
T Consensus 372 ~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 372 VLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 33332 35789999975 689999999999875
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=176.78 Aligned_cols=230 Identities=9% Similarity=0.022 Sum_probs=144.2
Q ss_pred hHHHhhhC-CCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++... ++..++++++| +|++|. +++++++++|.++|++||+++|+||+|.+++..|..+ ..+..
T Consensus 208 le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~--~~~~~-------- 277 (459)
T 4a6r_A 208 LEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF--GHQHF-------- 277 (459)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS--HHHHH--------
T ss_pred HHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc--hHhhc--------
Confidence 34445432 23334566666 455555 5599999999999999999999999999876665432 12221
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---h--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH-HH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---K--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK-KR 152 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~ 152 (289)
+....+.+|||+++.+|+|+||++++ +.+.+.+. . ....+..|++.+.++.++|+.... ++..+..+ +.
T Consensus 278 ---~~~pdi~t~sK~l~gg~~~lg~v~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 352 (459)
T 4a6r_A 278 ---GFQPDLFTAAKGLSSGYLPIGAVFVG-KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRD-EGIVQRVKDDI 352 (459)
T ss_dssp ---TCCCSEEEECGGGGTTSSCCEEEEEC-HHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTH
T ss_pred ---CCCCCeeehhhhhcCCCCCccceeeC-HHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 11122447899998445999999995 45555544 1 122334888999988888874321 22233333 33
Q ss_pred HHHHHHHHHHHHHhcC-CceecCCceEEEEEecCccccC-----CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 153 LKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLSS-----NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~i~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
.+..++.+.+.|.+++ +....+.| .++++++...... .......+++..++ ++||.+.|+. +++|
T Consensus 353 ~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~g-------~~iR 423 (459)
T 4a6r_A 353 GPYMQKRWRETFSRFEHVDDVRGVG-MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF-RNNLIMRACG-------DHIV 423 (459)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEET-TEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH-HTTEECEEET-------TEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCccccccccchHHHHHHHHHHHH-HCCeEEecCC-------CEEE
Confidence 3344444444454442 33444554 4555666542111 00111345777776 5599999862 6899
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
|+++. .+++++++++++|++++++....+
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 453 (459)
T 4a6r_A 424 SAPPLVMTRAEVDEMLAVAERCLEEFEQTL 453 (459)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99743 699999999999999998876543
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=173.75 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++..++++++| +|++|.+. +++++++|.++|+++|+++|+||+|.++ ..+.. ...+..
T Consensus 192 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~--~~~~~~--------- 259 (434)
T 3l44_A 192 LKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYG--GAQDLL--------- 259 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSS--CHHHHH---------
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecccc--HHHHHc---------
Confidence 4556655433334466666 55666555 8899999999999999999999999987 44432 112221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+....+.||||.+| +|+|+||++++ +.+.+.+.. ....+..|++.+.++.++++.... ++..++.++..+
T Consensus 260 --~~~~di~t~sK~~~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~ 334 (434)
T 3l44_A 260 --GVTPDLTALGKVIG-GGLPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGA 334 (434)
T ss_dssp --TCCCSEEEEEGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHH
T ss_pred --CCCCCeeehhhhhc-CCcCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHH
Confidence 11122568999998 89999999885 555554433 122344788888887777763211 111222222222
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
..++.+.+.+.+.++....+..|.++++.+...... .......++...|+ ++||.+.|+.. +++|+
T Consensus 335 ~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~rl 407 (434)
T 3l44_A 335 TLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPSKY------EAWFL 407 (434)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSSTT------CCEEC
T ss_pred HHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeecCC------CcEEE
Confidence 333333333333444323233345566666432110 01122245667666 56999998742 46898
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++. .+++++++++++|++++++..+
T Consensus 408 ~~~-~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 408 TTE-HTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecc-cCHHHHHHHHHHHHHHHHHHHh
Confidence 765 5999999999999999987653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=172.05 Aligned_cols=233 Identities=15% Similarity=0.146 Sum_probs=144.8
Q ss_pred hHHHhhhC--CCccEEEEeCCCC-CCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC----------CccCCCCccChhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSN-PLGTTMSRNELNLLVNFITEKNIHLISDEIYSG----------TVFSSPGFVSIME 68 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~N-PtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~----------~~~~~~~~~~~~~ 68 (289)
+++++... +.+++|++++|+| |||.+++.+++++|+++|+++|+++|+||+|.. ..+.+....++.+
T Consensus 163 l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~ 242 (456)
T 2ez2_A 163 LQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVH 242 (456)
T ss_dssp HHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHH
T ss_pred HHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhh
Confidence 34555432 2358999999988 999999999999999999999999999999985 2343322111110
Q ss_pred hhhccccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccc-------cCCCChHHHHH-HHHHhCCch
Q 044773 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-------FGLVSSQTQYL-LSALLSDKK 140 (289)
Q Consensus 69 ~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~q~~-~~~~l~~~~ 140 (289)
... ....++++ |++|..+ +| +.||++++++.+.+.+..... +...++....+ +..+++
T Consensus 243 ~~~--------~~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~--- 308 (456)
T 2ez2_A 243 EMF--------SYADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE--- 308 (456)
T ss_dssp HHH--------TTCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH---
T ss_pred hhc--------ccCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH---
Confidence 111 11223434 7888765 66 689999965665554433211 12233332222 222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCc---cccCCChhhHHHHHHHHHHhcCeEEeC-CCC
Q 044773 141 FAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH---LLSSNTFEAEMELWKKIVYDVKLNISP-GSS 216 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~ 216 (289)
.+. ++..++.+++.+++.+.|.+.|+++..|.+++++|+++.. ..+...+ ....++..|++++||.+.+ |..
T Consensus 309 ~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~g~~ 384 (456)
T 2ez2_A 309 AMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEF-PAQSLAASIYVETGVRSMERGII 384 (456)
T ss_dssp HTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGC-HHHHHHHHHHHHHSEECEEESHH
T ss_pred HhH---HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhc-cHHHHHHHHHHhcCeeeeccccc
Confidence 111 2233334555667778887778888778888999998753 1111111 1223466665788999766 432
Q ss_pred C-------C---CCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 217 C-------H---CTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 217 f-------~---~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
| + ..+.+++||+++. ++++++++++++|++++++..
T Consensus 385 ~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 385 SAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred ccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 2 1 1224789999974 589999999999999987654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=170.96 Aligned_cols=204 Identities=10% Similarity=0.031 Sum_probs=144.5
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++|++++|+||||.+++.+++.++ +|+++|+|++|+.+. .+ .++. +.++++.
T Consensus 163 ~~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~---~~-~~~~--------------~~di~~~ 218 (398)
T 2fyf_A 163 DPSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGG---LP-VDIA--------------ETDAYYF 218 (398)
T ss_dssp CTTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTT---SC-CCGG--------------GCSEEEE
T ss_pred cCCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCC---cc-cCcc--------------cCcEEEE
Confidence 3578999999999999999996655544 899999999998532 11 1111 2347899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh-----------------------ccccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK-----------------------MSSFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
|+||.+|.+| ++||++++++.+ +.+.. ...+++.+...+.++..+++.. .+.
T Consensus 219 s~sK~~~~~g-g~g~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~ 293 (398)
T 2fyf_A 219 APQKNFASDG-GLWLAIMSPAAL-SRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWL---VGN 293 (398)
T ss_dssp CTTSTTCSCS-SEEEEEECHHHH-HHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHH
T ss_pred ecCcccCCCC-ceEEEEECHHHH-HHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHc
Confidence 9999999665 599999965443 33311 1122335556666777666532 333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhc-CCceec--C--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 146 --ISENKKRLKQRHRKLVSGLEKA-GISCLK--S--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 146 --~~~~~~~~~~~~~~l~~~l~~~-g~~~~~--~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
+++.+++++++++++.+.|+++ |+++.. + .+++++|++++...+ ..++...|.++ ||.+.+|. .
T Consensus 294 g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~L~~~-gI~v~~g~--~ 364 (398)
T 2fyf_A 294 GGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVD------AGTVAKILRAN-GIVDTEPY--R 364 (398)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSC------HHHHHHHHHHT-TCBCCSCC--T
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCC------HHHHHHHHHHC-CcEEecCc--c
Confidence 6788899999999999999988 777763 4 345588888864222 24677777744 99999872 2
Q ss_pred CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
..+.+++||+++. ++++++++++++|++++++
T Consensus 365 ~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 365 KLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 2335799999974 6899999999999988753
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=173.03 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=146.4
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++++ .+++++|+ ++| +|++|. +++.+++++|.++|+++|+++|+||+|.++.+++..+ . .+...
T Consensus 215 le~~l~-~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~-~~~~~-------- 282 (439)
T 2oat_A 215 LERALQ-DPNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-A-VDYEN-------- 282 (439)
T ss_dssp HHHHTT-STTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-G-GGGGT--------
T ss_pred HHHHhC-CCCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-h-HHHhC--------
Confidence 445554 23566655 556 678896 5799999999999999999999999998765555322 1 11211
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
....+.||||.+| +| +|+||+++++ .+.+.+... ...+..|++.+.++.++++.. .+ .+..++++++
T Consensus 283 ---~~~Di~t~sK~l~-~G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~ 352 (439)
T 2oat_A 283 ---VRPDIVLLGKALS-GGLYPVSAVLCDD-DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL---EE--ENLAENADKL 352 (439)
T ss_dssp ---CCCSEEEECGGGG-TTSSCCEEEEECH-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHH
T ss_pred ---CCCcEEEeccccc-CCCCCeEEEEECH-HHHhccCCCCcccCCCcCHHHHHHHHHHHHHH---hh--hhHHHHHHHH
Confidence 1111339999999 78 9999999964 444443321 222346788888777777643 21 2456778888
Q ss_pred HHHHHHHHHhcCCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 157 HRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
.+++.+.|+++++.+. .+..|.+++++++.... .+..+++..|+ ++||.+.|+ +++++||+++. ++
T Consensus 353 ~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~----~~~~~l~~~l~-~~Gv~v~~~------~~~~iRi~~~~~~t 421 (439)
T 2oat_A 353 GIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLR-DNGLLAKPT------HGDIIRFAPPLVIK 421 (439)
T ss_dssp HHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHH-HTTEECCBS------SSSEEEECCCTTCC
T ss_pred HHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc----HHHHHHHHHHH-HCCeEEecC------CCCEEEEECccCCC
Confidence 8899999988654421 22334677788765310 12246777777 569999984 25789998853 69
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
++++++++++|++++++
T Consensus 422 ~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 422 EDELRESIEIINKTILS 438 (439)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988753
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=172.16 Aligned_cols=217 Identities=15% Similarity=0.138 Sum_probs=145.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++ .+++++|+++..+|++|.+ ++.+++++|.++|+++|+++|+||+|.++.+.+... . .+..
T Consensus 204 le~~l~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~-~~~~---------- 270 (433)
T 1z7d_A 204 LEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-C-VHHY---------- 270 (433)
T ss_dssp HHHHHT-STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-G-GGGG----------
T ss_pred HHHHhC-CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch-h-hHhc----------
Confidence 455554 3467775544336788975 788999999999999999999999998765544321 1 1221
Q ss_pred CCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
+....+.||||.+| +| +|+||+++++ .+.+.+... ...+..|++.+.++.++++... + .+..++++++.
T Consensus 271 -~~~~di~t~sK~l~-~G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~ 342 (433)
T 1z7d_A 271 -NVKPDVILLGKALS-GGHYPISAVLAND-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N--EKLCENAEKLG 342 (433)
T ss_dssp -TCCCSEEEECGGGG-TTSSCCEEEEECH-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHH
T ss_pred -CCCCCEEEECcccc-CCCCCeEEEEECH-HHHhhhccccccccCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHH
Confidence 11111338999999 89 9999999964 444443321 2223467888887777775421 1 23455667777
Q ss_pred HHHHHHHHhc--CCce--ecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-C
Q 044773 158 RKLVSGLEKA--GISC--LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-M 232 (289)
Q Consensus 158 ~~l~~~l~~~--g~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~ 232 (289)
+++.+.|+++ ++.. ..+..|.++|++++... .+..+++..|+ ++||.+.|+ +.+++||+++. +
T Consensus 343 ~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~~l~-~~Gv~v~~~------~~~~iRi~~~~~~ 410 (433)
T 1z7d_A 343 GPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-----VNVLDICLKLK-ENGLITRDV------HDKTIRLTPPLCI 410 (433)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----CCHHHHHHHHH-HTTEECCEE------TTTEEEECCCTTC
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-----hHHHHHHHHHH-HCCeEEecC------CCCEEEEECCcCC
Confidence 7777777764 4432 12223457778876421 11246777777 569999985 24689999864 6
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++++|++++++.
T Consensus 411 t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 411 TKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-20 Score=166.00 Aligned_cols=220 Identities=11% Similarity=0.077 Sum_probs=146.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++|++++|+||+ ..+ +++|.++|+++|+++|+||+|... .+.+... +...
T Consensus 164 l~~~i~~~-~~~~v~~~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~-~~~~------------ 224 (425)
T 3ecd_A 164 VEALAQQH-KPSLIIAGFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHA-NPVE------------ 224 (425)
T ss_dssp HHHHHHHH-CCSEEEEECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC-CGGG------------
T ss_pred HHHHHhhc-CCcEEEEccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhccccc-Cchh------------
Confidence 44555543 68999999999974 333 899999999999999999996533 2323221 1111
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..+++++|+||.+ +|.|.||++++++.+.+.+...... +..+.....++..++... +.+++++.+++++++.
T Consensus 225 -~~di~~~s~sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~ 299 (425)
T 3ecd_A 225 -HAHVVTSTTHKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANA 299 (425)
T ss_dssp -TCSEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHH
T ss_pred -cCcEEEecCCccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHH
Confidence 1238899999998 5567899999877666655443221 123334444444333321 1345677888899999
Q ss_pred HHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEEec-
Q 044773 158 RKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~~Ris~~~- 231 (289)
+++.+.|.+.|+++..+ .+++++|+.++..... .+.+...++++||.+. ||..+.+...+.+|+++..
T Consensus 300 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~ 373 (425)
T 3ecd_A 300 QALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLK------GAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAG 373 (425)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHH
T ss_pred HHHHHHHHhCCCeeccCCCCceEEEEEeCCCCCC------HHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhh
Confidence 99999999888887754 4567888887643211 1234444567899999 5443333345689999632
Q ss_pred ----CCHHHHHHHHHHHHHHHHHH
Q 044773 232 ----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ----~~~e~l~~~l~~l~~~l~~~ 251 (289)
.++++++++++.|++++++.
T Consensus 374 ~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 374 TTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCHHHHHHHHHHHHHHHhcc
Confidence 24899999999999998876
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=170.53 Aligned_cols=237 Identities=16% Similarity=0.198 Sum_probs=148.1
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCC--CccC-----CCCccChhhhhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSG--TVFS-----SPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~--~~~~-----~~~~~~~~~~~~ 71 (289)
+++++... +++++|++++||||+ |.+++.+++++|+++|++||+++|+|+++.. ..|. +....++.++.+
T Consensus 172 le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (467)
T 1ax4_A 172 LKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIF 251 (467)
T ss_dssp HHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHH
T ss_pred HHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhh
Confidence 45566543 268999999999999 8999999999999999999999999998653 1000 111123333321
Q ss_pred ccccccCCCCCceEEEecCccccCCC-CceEEEEEecCH-HHHHHHHhc----c---ccCCCChHHHHHHHHHhCCchHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDD-TVVAAATKM----S---SFGLVSSQTQYLLSALLSDKKFA 142 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~~~~-~~~~~~~~~----~---~~~~~~~~~q~~~~~~l~~~~~~ 142 (289)
+. ....++++.|+||.+|++ | ||++++++ .+.+.+... . .++..+.....+++..+.....
T Consensus 252 ~~------~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 321 (467)
T 1ax4_A 252 DM------YKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE- 321 (467)
T ss_dssp HH------GGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-
T ss_pred hh------ccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh-
Confidence 00 001125668999999876 5 78888734 444433221 1 1222233333333333332110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCC--ChhhHHHHHHHHHHhcCeEEeC-CCCC-C
Q 044773 143 QNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSN--TFEAEMELWKKIVYDVKLNISP-GSSC-H 218 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~p-g~~f-~ 218 (289)
++.++ ...++.+++.+.|.+.++++..+.+|+++|+++....... .-.+..+++..|++++||.+.| |..+ +
T Consensus 322 ~~~~~----~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~ 397 (467)
T 1ax4_A 322 EEYLH----YRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLG 397 (467)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHC
T ss_pred hhHHH----HHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccc
Confidence 11222 2235567788888777888878888999999843211000 0013456888885688999998 5432 1
Q ss_pred C---------CCCCeEEEEEe-c-CCHHHHHHHHHHHHHHHHHHH
Q 044773 219 C---------TEPGWFRVCFA-N-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 219 ~---------~~~~~~Ris~~-~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
. ...+++||+++ . ++++++++++++|++++++..
T Consensus 398 ~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp BCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 1 12379999997 3 689999999999999988753
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=172.21 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=137.2
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMS-RNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..++ ++++|+++.++|++|.+.+ ++++++|.++|+++|+++|+||+|.++ ..+.. ...+..
T Consensus 189 le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~~~--------- 256 (427)
T 3fq8_A 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYG--GVQEKF--------- 256 (427)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT--HHHHHT---------
T ss_pred HHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hhhHhc---------
Confidence 466666644 4556555544677776665 667999999999999999999999977 44432 111121
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+....+.||||+++ +|+|+||++++ +.+.+.+.. ....+..|++.+.++.++++.... ++..+..++..+
T Consensus 257 --~~~~di~t~sK~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~ 331 (427)
T 3fq8_A 257 --GVTPDLTTLGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITK 331 (427)
T ss_dssp --TCCCSEEEECGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHH
T ss_pred --CCCCChhhhhhhhh-CCcceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 12222578999999 89999999994 555544432 122233678888887777752211 111222222223
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
..++.+.+.+.+.++....+..|.++++.+...... .......+++..++ ++||.+.|+.. ..+|+
T Consensus 332 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~~------~r~~~ 404 (427)
T 3fq8_A 332 RLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF------EAGFT 404 (427)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT------SCEEC
T ss_pred HHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCcEEecCCC------CCEEe
Confidence 333333343444444434444567788887642111 01112245777776 66999998753 24555
Q ss_pred EEecCCHHHHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
++. .+++++++++++|++++++
T Consensus 405 ~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 405 SLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHH
T ss_pred eCc-CCHHHHHHHHHHHHHHHHh
Confidence 544 5999999999999998864
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-21 Score=169.28 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=130.8
Q ss_pred CccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC--ccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 11 KVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGT--VFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 11 ~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++++|++++||||| |.+++.+++++|+++|+++|+++|+|++|... .+.+. +...+.. ..+ .++
T Consensus 132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~--------~~d--~~~ 198 (347)
T 1jg8_A 132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV---PVKEYAG--------YAD--SVM 198 (347)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---CHHHHHH--------TCS--EEE
T ss_pred CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC---ChHHhcc--------ccc--EEE
Confidence 68999999999999 99999999999999999999999999997521 11122 2222211 123 345
Q ss_pred ecCccccCCCCceEEE-EEecCHHHHHHHHhccc-cC---CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGA-IYSNDDTVVAAATKMSS-FG---LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~-i~~~~~~~~~~~~~~~~-~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
.|+||.++.+ +|+ +++ ++.+.+.+..... +. ..+.+.+.+....++.. .+...+ ..++++.+.+
T Consensus 199 ~s~sK~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~l~~ 267 (347)
T 1jg8_A 199 FCLSKGLCAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM------VDRLKE-DHENARFLAL 267 (347)
T ss_dssp EESSSTTCCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS------STTHHH-HHHHHHHHHH
T ss_pred EecccccCCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHH
Confidence 5899999743 475 555 4544443332211 11 12334444333334321 111122 2345677888
Q ss_pred HHHhcCCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-cCCHHHHHHH
Q 044773 163 GLEKAGISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-NMSEDTLKLS 240 (289)
Q Consensus 163 ~l~~~g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~~~~e~l~~~ 240 (289)
.|+++|+++. .+..+.++|++++.. . .+..++...|. ++||.+.|+. ++++|+++. .+++++++++
T Consensus 268 ~L~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~ 335 (347)
T 1jg8_A 268 KLKEIGYSVNPEDVKTNMVILRTDNL--K---VNAHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEEA 335 (347)
T ss_dssp HHHHHTCBCCGGGCCSSEEEEECTTS--S---SCHHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHHH
T ss_pred HHHhcCceeccCCCcceEEEEEcccc--c---CCHHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHHH
Confidence 8877777652 233445788888631 1 12246788776 6699998752 468999994 4699999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|++++++
T Consensus 336 ~~~l~~~l~~ 345 (347)
T 1jg8_A 336 LNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=172.51 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=149.0
Q ss_pred CccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++.+|+++.++|++|.+. +++++++|.++|+++|+++|+||+|.+++..|..+ ..+... ....+.+
T Consensus 223 ~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~--a~~~~~-----------v~pdi~t 289 (472)
T 3hmu_A 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF--GTQTMG-----------IRPHIMT 289 (472)
T ss_dssp GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC--HHHHHT-----------CCCSEEE
T ss_pred CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccc--hhHHhC-----------CCCceee
Confidence 345544444477777755 88999999999999999999999999876666432 122221 1111447
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK-QRHRKLVSGL 164 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l 164 (289)
|||+++.+|+|+||++++ +.+.+.+... ...+..|++.+.++.++|+... + +...+.++ ++.+++++.|
T Consensus 290 ~sK~l~gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~---~--~~~~~~~~~~~~~~l~~~L 363 (472)
T 3hmu_A 290 IAKGLSSGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE---E--ENILDHVRNVAAPYLKEKW 363 (472)
T ss_dssp ECGGGTTTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHTHHHHHHHHH
T ss_pred echhhhcCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH---H--hHHHHHHHHHHHHHHHHHH
Confidence 899998555999999995 5555555311 1233478888888888776422 1 23344455 5556666666
Q ss_pred Hhc----CCceecCCceEEEEEecCcccc-CCC-----hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 165 EKA----GISCLKSNAGLFCWVDMRHLLS-SNT-----FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 165 ~~~----g~~~~~~~~g~~~~i~~~~~~~-~~~-----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
+++ .+....+.|. ++++++..... ... .....+++..|+ +.||.+.|+. +++||++.. .+
T Consensus 364 ~~l~~~~~v~~vr~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~g-------~~iRi~p~~~~t 434 (472)
T 3hmu_A 364 EALTDHPLVGEAKIVGM-MASIALTPNKASRAKFASEPGTIGYICRERCF-ANNLIMRHVG-------DRMIISPPLVIT 434 (472)
T ss_dssp HGGGGSTTEEEEEEETT-EEEEEECSCGGGTCCBSSCTTHHHHHHHHHHH-HTTBCCEEET-------TEEEECCCTTCC
T ss_pred HHHhcCCCeEEEEecCc-eEEEEEecCccccccccchhHHHHHHHHHHHH-HCCcEEEecC-------CEEEEECCCCCC
Confidence 543 2333444454 55566653211 000 011345777776 5699999862 689999743 69
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 044773 234 EDTLKLSMQRLKAFVDSITTTLHNQSNHQSIKN 266 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 266 (289)
++++++++++|++++++....+..++..++.+-
T Consensus 435 ~e~i~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 467 (472)
T 3hmu_A 435 PAEIDEMFVRIRKSLDEAQAEIEKQGLMKSEGH 467 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 999999999999999998887877777766543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=165.21 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=132.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. . ...+ +.++++.|
T Consensus 148 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~-~----~~~~------------~~di~~~s 207 (398)
T 2rfv_A 148 PETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ-Q----PLQL------------GADIVVHS 207 (398)
T ss_dssp TTEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C----GGGG------------TCSEEEEE
T ss_pred CCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C----chhh------------CCcEEEEe
Confidence 47899999999999999998 999999999999999999999865332 1 1111 46689999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhcc-cc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMS-SF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.++.+|.|+ ||++++++.+.+.+.... .+ ...+++.+.++...++.. ..++++ +.++.+.+.+.|+
T Consensus 208 ~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~----~~~~~~~l~~~l~ 280 (398)
T 2rfv_A 208 VTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL---GIRMER----HCENALKIARFLE 280 (398)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH---HHHHHH----HHHHHHHHHHHHH
T ss_pred CcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH---HHHHHH----HHHHHHHHHHHHH
Confidence 999998899998 999997655543443322 22 346778888888888753 333333 4445555566665
Q ss_pred hc---------------CCceec----CCceEEEEEecCccccCCChhhHHHHHHHHHHhc---CeEEeCCCCCCC----
Q 044773 166 KA---------------GISCLK----SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDV---KLNISPGSSCHC---- 219 (289)
Q Consensus 166 ~~---------------g~~~~~----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~~---- 219 (289)
+. ++++.. ..++++ +++++.. ......++++. |+.+.+|..|+.
T Consensus 281 ~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~-~~~~~~~---------~~~~~~l~~~~~~~~i~~~~G~~~~li~~~ 350 (398)
T 2rfv_A 281 GHPSITRVYYPGLSSHPQYELGQRQMSLPGGII-SFEIAGG---------LEAGRRMINSVELCLLAVSLGDTETLIQHP 350 (398)
T ss_dssp TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE-EEEETTH---------HHHHHHHHTTCSSSEECSCCSSSSCEEECH
T ss_pred cCCCeeEEECCCCCCCccHHHHHhhCCCCceEE-EEEEcCC---------HHHHHHHHHhCCcceeccCCCCcceeeecc
Confidence 43 122222 235544 4577632 01223343333 788888866420
Q ss_pred -----------------CCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 220 -----------------TEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 220 -----------------~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
..++++||+++. +++++++.+.+.|++
T Consensus 351 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 351 ASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 126899999976 456667666666654
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=168.60 Aligned_cols=209 Identities=12% Similarity=0.056 Sum_probs=148.6
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. +....++..+
T Consensus 158 l~~~i~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~------------ 216 (416)
T 1qz9_A 158 LPQAID--QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQA------------ 216 (416)
T ss_dssp HHHHCS--TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHH------------
T ss_pred HHHHhC--CCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc----cCcCCChhhc------------
Confidence 344444 47899999999999999999 89999999999999999999973 2222233222
Q ss_pred CceEEEecCccccCCCCceE-EEEEecCHHHHHHHHhc-------------------------cccCCCChHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRV-GAIYSNDDTVVAAATKM-------------------------SSFGLVSSQTQYLLSAL 135 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~-------------------------~~~~~~~~~~q~~~~~~ 135 (289)
+.++++.|++|.++ +|.++ ||++++++.+ +.+... ...++.+...+.++..+
T Consensus 217 ~~d~~~~s~~K~l~-~g~~~~g~l~~~~~~~-~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 294 (416)
T 1qz9_A 217 GADYAIGCTYKYLN-GGPGSQAFVWVSPQLC-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECG 294 (416)
T ss_dssp TCSEEEECSSSTTC-CCTTCCCEEEECTTTT-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHH
T ss_pred CCCEEEecCcccCC-CCCCCeEEEEECHHHH-hccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHH
Confidence 34588999999985 66777 9999976543 222111 01223455666666555
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhc
Q 044773 136 LSDKKFAQNYISENKKRLKQRHRKLVSGLEKA----GISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDV 207 (289)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (289)
++... ...+++.+++++++++++.+.|.+. |+++..+. .+.++|+++++ ..++...|. ++
T Consensus 295 l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~-~~ 362 (416)
T 1qz9_A 295 LDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------GYAVIQALI-DR 362 (416)
T ss_dssp HHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------HHHHHHHHH-TT
T ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---------HHHHHHHHH-hC
Confidence 54321 1235777888899999999999886 78877664 24567888763 135777776 66
Q ss_pred CeEEeCCCCCCCCCCCeEEEEEe--cCCHHHHHHHHHHHHHHHHHH
Q 044773 208 KLNISPGSSCHCTEPGWFRVCFA--NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 208 gi~v~pg~~f~~~~~~~~Ris~~--~~~~e~l~~~l~~l~~~l~~~ 251 (289)
||.+... .++++||+++ .++++++++++++|++++++.
T Consensus 363 gi~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 363 GVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp TEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 9987531 3578999997 469999999999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=160.27 Aligned_cols=205 Identities=12% Similarity=0.159 Sum_probs=138.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc--CCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|++++||| ||.+++.+++++|+++|+++|+++|+|++|..+.. .+... ....+ ..+..+++.
T Consensus 141 ~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~----------~~~~d~~~~ 208 (356)
T 1v72_A 141 QPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTW----------KAGVDALSF 208 (356)
T ss_dssp EEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTG----------GGTCCEEEE
T ss_pred CceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhh----------hhcCCEEEE
Confidence 689999999987 99999999999999999999999999999974321 12211 11111 012224566
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCC--C-ChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGL--V-SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~--~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|+||. |. ....||++++++.+ +.+.... ..+. . +......+...+.+..+ .+..++++++++++.+.|
T Consensus 209 s~sK~-g~-~~G~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L 280 (356)
T 1v72_A 209 GATKN-GV-LAAEAIVLFNTSLA-TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGL 280 (356)
T ss_dssp CCGGG-TC-SSCEEEEESSGGGH-HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ecccC-CC-cCccEEEEECHHHH-hhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHH
Confidence 99998 53 23345888855443 3332221 1111 1 22333334455655322 334566788889999999
Q ss_pred Hhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 165 EKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 165 ~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
+++ |+++..+.+++++|++++. ++...|. ++||.+.||. |+ ++++||++.. +++++++++++
T Consensus 281 ~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~ 344 (356)
T 1v72_A 281 EGLGGVEVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLN 344 (356)
T ss_dssp TTCTTEEEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHH
T ss_pred hhCCCcEEccCCCccEEEEEcCH-----------HHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHH
Confidence 886 8887777788889988752 4677765 6699999987 54 6799999854 68999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
+|++++++.
T Consensus 345 ~l~~~l~~~ 353 (356)
T 1v72_A 345 QVRLAADRT 353 (356)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHhh
Confidence 999876543
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=173.21 Aligned_cols=216 Identities=13% Similarity=0.104 Sum_probs=144.7
Q ss_pred hHHHhhhC-CCccEEEEeC-CCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTN-PSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~-p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++.++ +++++|++++ ++||+|.++ +.+++++|.++|+++|+++|+||+|.+++.+|..+ . .+...
T Consensus 223 le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~-a-~~~~~------- 293 (457)
T 3tfu_A 223 FEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-A-ADHAG------- 293 (457)
T ss_dssp HHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-T-HHHHT-------
T ss_pred HHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh-H-hHhcC-------
Confidence 45556543 3567777776 689999776 78889999999999999999999999876655432 2 12211
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
....+.||||.++ +| +|+||++++ +.+.+.+.. ....+..|++.+.++.+.|+... + +...
T Consensus 294 ----~~pdiit~sK~l~-gG~~~lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~---~--~~~~ 362 (457)
T 3tfu_A 294 ----VSPDIMCVGKALT-GGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL---G--QDWR 362 (457)
T ss_dssp ----CCCSEEEECGGGG-TTSSCCEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH---T--SCHH
T ss_pred ----CCceEEEEChhhh-CCCcceEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh---h--hHHH
Confidence 1111339999998 56 799999995 455555531 11233478888888777776321 1 1234
Q ss_pred HHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 151 KRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
++++++.+++.+.|+++ ++....+. |.++++++.+..+ ..++...|+ ++||.+.|.. +++|
T Consensus 363 ~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~~------~~~~~~~l~-~~Gv~v~~~~-------~~lR 427 (457)
T 3tfu_A 363 TRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPVD------LAVATPAAL-DRGVWLRPFR-------NLVY 427 (457)
T ss_dssp HHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCCC------HHHHHHHHH-HTTEECCCBT-------TEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCccc------HHHHHHHHH-HCCeEEEecC-------CEEE
Confidence 45555666666666654 23333344 4567778765322 246777777 5599998742 5899
Q ss_pred EEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 227 is~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
|+++. .+++++++++++|++++++..
T Consensus 428 i~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 428 AMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99754 699999999999999987643
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=167.93 Aligned_cols=208 Identities=12% Similarity=0.074 Sum_probs=136.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|... ..... .+ .+.++++.|
T Consensus 216 ~~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g----~~~~~-~~------------~~~div~~S 275 (464)
T 1ibj_A 216 PQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSP----VLSRP-LE------------LGADIVMHS 275 (464)
T ss_dssp SSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCT----TTCCG-GG------------TTCSEEEEE
T ss_pred cCceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccc----ccCCh-hh------------cCCEEEEEC
Confidence 57999999999999999997 999999999999999999999742 11111 11 256799999
Q ss_pred CccccCCC-CceEEEEEecCHHHHHHHHhccc-c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH-----
Q 044773 90 LSKDLGLP-GFRVGAIYSNDDTVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV----- 161 (289)
Q Consensus 90 ~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----- 161 (289)
+||+++.+ |+|+||++++++.+.+.+..... . ...+++.+.++.+.++... ..+++.........+++.
T Consensus 276 ~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~---~r~~~~~~~~~~l~~~l~~~~~v 352 (464)
T 1ibj_A 276 ATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA---LRIEKQQENARKIAMYLSSHPRV 352 (464)
T ss_dssp TTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH---HHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999744 89999999987666655554432 2 2367788888877877532 112222222222222222
Q ss_pred -----HHHHhc-CCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCC------------CCCC-
Q 044773 162 -----SGLEKA-GISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGS------------SCHC- 219 (289)
Q Consensus 162 -----~~l~~~-g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~------------~f~~- 219 (289)
+.|+++ ++++..++ .|.++++++.. ......+...| +..||.+.+|. .++.
T Consensus 353 ~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~ 425 (464)
T 1ibj_A 353 KKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS------VALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIP 425 (464)
T ss_dssp CEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC------HHHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCC
T ss_pred eEEECCCCCCCcchHHHhccCCCCceEEEEEECC------HHHHHHHHHhc-CcceEeecCCCCceeeecccccccccCC
Confidence 223332 34444443 23466677742 11123355554 35788888885 2221
Q ss_pred --------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 --------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 --------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++++||+++. |++++++++|++++++
T Consensus 426 ~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 426 AEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 125789999995 8999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=170.97 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=138.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCc-cC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLG-TT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG-~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++..++++++|+||+| .+ .+++.+++|.++|+++|+++|+||+|.++ ..+.. ...+...
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~--~~~~~~~-------- 258 (429)
T 4e77_A 190 VRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALA--GAQDYYH-------- 258 (429)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTT--CHHHHTT--------
T ss_pred HHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcc--hHHHhcC--------
Confidence 566666653344557778866554 33 34567999999999999999999999987 44432 2222211
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
....+.||||.+| +|+|+||++++ +.+.+.+.. ....+..|++.+.++.++++.... ++..++.++..+
T Consensus 259 ---~~pdi~t~sK~~~-~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~ 332 (429)
T 4e77_A 259 ---VIPDLTCLGKIIG-GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTD 332 (429)
T ss_dssp ---CCCSEEEEEGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHH
T ss_pred ---CCCCeeeeccccc-CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 1122459999999 89999999995 455544432 122334788888887777762211 122233333333
Q ss_pred HHHHHHHHHHHhcCCceecCCceEEEEEecCccccCCC--------hhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEE
Q 044773 155 QRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNT--------FEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFR 226 (289)
Q Consensus 155 ~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~--------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~R 226 (289)
..++.|.+.+.+.++....+..|.++++.+........ .....+++..|+ ++||.+.|+.. ..+|
T Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~------~~~~ 405 (429)
T 4e77_A 333 SLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLML-EEGVYLAPSAF------EAGF 405 (429)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHH-HTTEECCSSTT------SCEE
T ss_pred HHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHH-HCCeEEeecCC------CCEE
Confidence 33333444444445544444456788888875311111 112245777776 55999998742 2467
Q ss_pred EEEecCCHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~ 249 (289)
+++. .+++++++++++|+++++
T Consensus 406 ~~~~-~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 406 MSLA-HSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp CCTT-CCHHHHHHHHHHHHHHHT
T ss_pred Eecc-CCHHHHHHHHHHHHHHHH
Confidence 6655 699999999999998875
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=170.99 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=141.6
Q ss_pred hHHHhhhC-CCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
++++++++ +++++ ++++| +||||.++ +.+++++|.++|+++|+++|+||+|+++ ..+.. ...+..
T Consensus 193 le~~l~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~--~~~~~~-------- 260 (434)
T 2epj_A 193 LERVFAEYGDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE--GAQGYF-------- 260 (434)
T ss_dssp HHHHHHHHGGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT--HHHHHH--------
T ss_pred HHHHHHhCCCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc--hhhHHh--------
Confidence 45556542 24555 55566 67899866 7999999999999999999999999976 33321 111221
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-c----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-M----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+....+.||||.+| +|+|+||+++++ .+.+.+.. . ...+..|++.+.++.++++.. ++ .+..+++
T Consensus 261 ---~~~~di~s~sK~l~-~G~~~G~v~~~~-~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~---~~--~~~~~~~ 330 (434)
T 2epj_A 261 ---NIEGDIIVLGKIIG-GGFPVGAVAGSR-EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL---EE--EPVYSVS 330 (434)
T ss_dssp ---TCCCSEEEEEGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---HH--SCHHHHH
T ss_pred ---CCCCCeeeecchhc-CCcceeeeeecH-HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHH
Confidence 11122459999999 599999999964 44444333 1 122336778887777776532 11 2344556
Q ss_pred HHHHHHHHHHHHhc----CCceecCCceEEEEEecCcc-ccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 154 KQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRHL-LSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 154 ~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
+++.+++.+.|+++ ++....+..|.++|+.++.. ... .......++...|+ ++||.+.|+..
T Consensus 331 ~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------ 403 (434)
T 2epj_A 331 REAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPSNL------ 403 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT------
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEeccCC------
Confidence 66666666666553 55432233445778887641 100 00122346777776 66999998742
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
.++|+++. ++++++++++++|++++++.
T Consensus 404 ~~~~~~~~-~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 404 EAVFTGLP-HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp SCEECCTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 24677654 69999999999999998765
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=169.38 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=140.0
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++..+++...+++++| +|++|.+. +++++++|.++|++||+++|+||+|.++ ..+... ..+..
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~--~~~~~--------- 257 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNC--GQGYY--------- 257 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTH--HHHHH---------
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch--HHHHh---------
Confidence 4556654433334455666 55555544 6888999999999999999999999987 544321 11221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+....+.||||++| +|+|+||++++ +.+.+.+.. ....+..|++.+.++.++++... ++..+.++
T Consensus 258 --~~~~di~t~sK~~~-~G~~iG~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~~~ 327 (429)
T 3k28_A 258 --GVTPDLTCLGKVIG-GGLPVGAYGGK-AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVEFE 327 (429)
T ss_dssp --TCCCSEEEECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHHHH
T ss_pred --CCCCceehhhhhhc-CCCCeEEEEEc-HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHHHH
Confidence 12223568999998 69999999995 445444432 12233478899998888887642 34455566
Q ss_pred HHHHHHHHHHHhc----CC-ceecCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 155 QRHRKLVSGLEKA----GI-SCLKSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g~-~~~~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
++++++.+.|++. +. ....+.+ .++++.+...... .......+++..++ ++||.+.|+. .
T Consensus 328 ~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~ 399 (429)
T 3k28_A 328 RKAEMLEAGLRKAAEKHGIPHHINRAG-SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ------F 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST------T
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeec-cEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC------C
Confidence 6666666666553 32 2333444 4555665432110 11122345777776 6699999863 3
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+.+|+++. .+++++++++++|++++++
T Consensus 400 ~~~r~~~~-~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 400 EGLFLSTV-HSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp SCBCCCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECC-CCHHHHHHHHHHHHHHHHH
Confidence 46888775 5999999999999998865
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=165.73 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=139.5
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|+|++++|+||||.+++ ++. +++|+++|+|++|+... ...++.+ . ++++.
T Consensus 139 ~~~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~----~~~~~~~------------~--di~~~ 192 (360)
T 1w23_A 139 NENDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILS----RPLKVNQ------------F--GMIYA 192 (360)
T ss_dssp CTTEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTS----SCCCGGG------------C--SEEEE
T ss_pred CCCCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCC----CCcCccc------------C--CEEEE
Confidence 457999999999999999987 332 37999999999998532 1112211 1 37899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--------------cccCCCChHHHHHHHHHhCCchHHHH-HHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--------------SSFGLVSSQTQYLLSALLSDKKFAQN-YISENKKRL 153 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--------------~~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~ 153 (289)
|+||.+|.+| +||++++++.+ +.+... ..++..+...+.++..+++... +. .+++.++++
T Consensus 193 s~sK~~~~~G--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~ 267 (360)
T 1w23_A 193 GAQKNLGPSG--VTVVIVKKDLL-NTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIK--DLGGAEAIAKQN 267 (360)
T ss_dssp ETTTTTSCTT--CEEEEEEHHHH-CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHH
T ss_pred EcccccCCCC--cEEEEEcHHHH-hhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHH--HhcCHHHHHHHH
Confidence 9999998666 89999965443 322211 1113345566666666665321 11 467888999
Q ss_pred HHHHHHHHHHHHhcC-C-cee-cC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 154 KQRHRKLVSGLEKAG-I-SCL-KS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 154 ~~~~~~l~~~l~~~g-~-~~~-~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
+++++++.+.|++++ + ... .+ .+++++|++++.. .+..++...|. ++||.+.||..+ ++++||+
T Consensus 268 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~-~~gi~~~~~~~~----~~~iRis 336 (360)
T 1w23_A 268 EEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAKAK-EQGFVGLNGHRS----VGGCRAS 336 (360)
T ss_dssp HHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHHHH-HTTEESCBCCTT----TCSEEEE
T ss_pred HHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHHHHHH-HCCeeeecCCCC----CCeEEEE
Confidence 999999999999875 4 433 13 3466888888642 12245666654 679999988754 4689999
Q ss_pred Eec-CCHHHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
++. ++++++++++++|++++++
T Consensus 337 ~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 337 IYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHhh
Confidence 974 5899999999999988764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-20 Score=170.38 Aligned_cols=226 Identities=11% Similarity=0.072 Sum_probs=148.5
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++... .++++|+++.++|++|. +++++++++|.++|+++|+++|+||+|.++++.|..+ ...+...
T Consensus 210 le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~-~~~~~~~------- 281 (476)
T 3i5t_A 210 FEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF-ASEKVFG------- 281 (476)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHTTC-------
T ss_pred HHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCce-eeecccC-------
Confidence 34455431 24566666655788885 8899999999999999999999999999886666432 2110211
Q ss_pred CCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc---------cccCCCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM---------SSFGLVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~---------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
. ...+.+|||++| .| +|+|+++++ +.+.+.+... ...+..|++.+.++.++|+... + +.
T Consensus 282 -v---~pdi~t~sK~l~-~G~~plg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~---~--~~ 350 (476)
T 3i5t_A 282 -V---VPDIITFAKGVT-SGYVPLGGLAIS-EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELME---R--EG 350 (476)
T ss_dssp -C---CCSEEEECGGGG-TTSSCCEEEEEC-HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred -C---Ccchhhhhhhhc-CCCcCeEEEEEC-HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHH---h--HH
Confidence 1 111447899998 69 999999995 5555555432 1234478888888888876432 1 33
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccC-CChh----hHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSS-NTFE----AEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~-~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
..+.++++.+++.+.|++++ +....+.| .++++++...... ..+. ...+++..++ +.||.+.|..
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~g---- 424 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVAETRSVG-LVGCVQCLLDPTRADGTAEDKAFTLKIDERCF-ELGLIVRPLG---- 424 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCC-----CCHHHHHHHHHHHHHHH-HTTEECEEET----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-ceeEEEEecCccccccccchhHHHHHHHHHHH-HCCCEEEecC----
Confidence 45566666677777776541 23334444 4556776543111 1110 1345667776 5699999831
Q ss_pred CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 220 TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 220 ~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
+++||++.. .+++++++++++|++++++....+
T Consensus 425 ---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 425 ---DLCVISPPLIISRAQIDEMVAIMRQAITEVSAAH 458 (476)
T ss_dssp ---TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999743 699999999999999999877644
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-20 Score=168.13 Aligned_cols=219 Identities=12% Similarity=0.083 Sum_probs=144.8
Q ss_pred hHHHhhhC--CCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRH--LKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++++. +++++ ++++| +||||. +.+++++++|.++|+++|+++|+||+|.++.+.+..+ ..+...
T Consensus 208 le~~l~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~--~~~~~~------ 278 (449)
T 3a8u_X 208 LLKLIELHDASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF--GADSFG------ 278 (449)
T ss_dssp HHHHHHHHCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS--HHHHHT------
T ss_pred HHHHHHhcCCCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcch--hhhhcC------
Confidence 34555532 24555 56667 578996 6679999999999999999999999998775544321 112211
Q ss_pred CCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-----------cccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-----------SSFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-----------~~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
.... +.||||.++ +| +|+||+++++ .+.+.+... ...+..|++.+.++.++++.. .+
T Consensus 279 --~~~d---i~s~sK~l~-~G~~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~- 347 (449)
T 3a8u_X 279 --VTPD---LMCIAKQVT-NGAIPMGAVIAST-EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL---QK- 347 (449)
T ss_dssp --CCCS---EEEECGGGG-TTSSCCEEEEEEH-HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH---HH-
T ss_pred --CCCC---EEEEccccc-CCCCceEEEEECH-HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH---Hh-
Confidence 1111 338999998 68 9999999964 555555432 112336778887777777632 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-Ccee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAG-ISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
....++++++.+++.+.|++++ +... .+..|.++|++++....... .+..++...|+ ++||.+.|+.
T Consensus 348 -~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~l~-~~Gv~v~~~g------- 417 (449)
T 3a8u_X 348 -ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI-VRPFEAGMALW-KAGFYVRFGG------- 417 (449)
T ss_dssp -TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS-HHHHHHHHHHH-HHTEECEEET-------
T ss_pred -cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc-ccHHHHHHHHH-HCCcEEecCC-------
Confidence 2345667777778888887642 3221 12345688888875321100 02235777777 5599999861
Q ss_pred CeEEEEEe-cCCHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFA-NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 223 ~~~Ris~~-~~~~e~l~~~l~~l~~~l~~ 250 (289)
+++||+++ ..+++++++++++|++++++
T Consensus 418 ~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 418 DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 68999975 37999999999999998865
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=160.31 Aligned_cols=207 Identities=19% Similarity=0.148 Sum_probs=139.8
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCc-cChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGF-VSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++|++++| ||||.+++.+++++|+++|+++|+++|+||+|.++.++..+. .....+ .....++..|
T Consensus 145 ~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~----------~~~~d~~~~s 213 (359)
T 1svv_A 145 IPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI----------ARLTDMFYIG 213 (359)
T ss_dssp EEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH----------HHHCSEEEEE
T ss_pred CceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhh----------hhcCCEEEEe
Confidence 4899999999 799999999999999999999999999999995432221111 111111 0123477889
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc---ccc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM---SSF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.+|..+ + ..+|+++++++.+ +.+... ... ...+......+..+++... .++.+++++++++++.+.|+
T Consensus 214 ~~K~g~-~-~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~ 285 (359)
T 1svv_A 214 ATKAGG-M-FGEALIILNDALK-PNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLE 285 (359)
T ss_dssp CTTTTC-S-SCEEEEECSGGGC-TTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCC-C-CceEEEEEcccHH-HHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhc
Confidence 999743 3 5689999865443 222221 111 1123333333455566532 36677888999999999995
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
..|+++..+.+++++|++++ .++...|++++||.+.+.. ...++++||+++. ++++++++++++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l 351 (359)
T 1svv_A 286 ACGIRLAWPSASNQLFPILE-----------NTMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVL 351 (359)
T ss_dssp HTTCCBSSCCSSSEECBEEE-----------HHHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCeEEccCCccceEEEEcC-----------HHHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHH
Confidence 44888887888889988765 2477777766699983211 1235789999854 6999999999999
Q ss_pred HHHHHH
Q 044773 245 KAFVDS 250 (289)
Q Consensus 245 ~~~l~~ 250 (289)
++++++
T Consensus 352 ~~~~~~ 357 (359)
T 1svv_A 352 KRLVAS 357 (359)
T ss_dssp HHC---
T ss_pred HHHHhc
Confidence 988764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=161.42 Aligned_cols=218 Identities=11% Similarity=0.060 Sum_probs=143.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++..+ ++++|++++|+||+ ..+ +++|.++|+++|+++|+||+|............. ..
T Consensus 161 l~~~i~~~-~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~-------------~~ 221 (420)
T 3gbx_A 161 MAKLAKEH-KPKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP-------------VP 221 (420)
T ss_dssp HHHHHHHH-CCSEEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS-------------TT
T ss_pred HHHHHHhc-CCeEEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc-------------cc
Confidence 45556543 58999999999974 555 8999999999999999999986432221111111 11
Q ss_pred CceEEEecCccccCCCCceEEEEEecC--HHHHHHHHhcc-c--cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSND--DTVVAAATKMS-S--FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~--~~~~~~~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
..+++++|+||+++ |.+.||+++++ +.+.+.+.... . .+..+...+.+++.++... +.+++++.+++++++
T Consensus 222 ~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~ 297 (420)
T 3gbx_A 222 HAHVVTTTTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKN 297 (420)
T ss_dssp TSSEEEEESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHH
T ss_pred cCCEEEeecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHH
Confidence 24488999999994 33349999976 35555444321 1 1223334444444333221 134567888889999
Q ss_pred HHHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC-------CCCCCCCCCCeEEEE
Q 044773 157 HRKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP-------GSSCHCTEPGWFRVC 228 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-------g~~f~~~~~~~~Ris 228 (289)
++++.+.|.+.|+++..+ ..++++|+.++..... .+.+...++++||.+.| +..|+ +..+||+
T Consensus 298 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~ 368 (420)
T 3gbx_A 298 AKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLT------GKEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIG 368 (420)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEE
T ss_pred HHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCCC------HHHHHHHHHHCCcEeccccCCCCccccCC---CcceEEe
Confidence 999999999888887653 4567788887642211 12344455688999998 33333 3459999
Q ss_pred Eec-----CCHHHHHHHHHHHHHHHHHH
Q 044773 229 FAN-----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 229 ~~~-----~~~e~l~~~l~~l~~~l~~~ 251 (289)
++. .+++++++++++|++++++.
T Consensus 369 ~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 369 SPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 953 34789999999999888664
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=163.37 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=142.5
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|+|++++|+||||.+++ ++++| +|+++++|++|+.. ....++. +.++++.
T Consensus 140 ~~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~----~~~~~~~--------------~~d~~~~ 193 (362)
T 2c0r_A 140 QDNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDIL----SRPFDLN--------------QFGLVYA 193 (362)
T ss_dssp CTTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTT----SSCCCGG--------------GCSEEEE
T ss_pred CCCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhcc----CCccchh--------------HCcEEEE
Confidence 567999999999999999755 35555 89999999999843 1112211 1247888
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh--------------ccccCCCChHHHHHHHHHhCCchHHHH--HHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK--------------MSSFGLVSSQTQYLLSALLSDKKFAQN--YISENKKR 152 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~--------------~~~~~~~~~~~q~~~~~~l~~~~~~~~--~~~~~~~~ 152 (289)
|+||++|.+| +||++++++.+ +.+.. ....++.+.+.+.++..+++.. .+ .+++.+++
T Consensus 194 s~~K~~g~~G--~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~~~~~~~~~~ 267 (362)
T 2c0r_A 194 GAQKNLGPSG--VTVVIVREDLV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI---EERGGLEGVQQA 267 (362)
T ss_dssp ETTTTTCCSS--CEEEEEEGGGS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH---HHTTHHHHHHHH
T ss_pred eccccccCcC--cEEEEEcHHHH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH---HHhCCHHHHHHH
Confidence 9999999778 99999976543 21111 1122446778888888887642 22 47888899
Q ss_pred HHHHHHHHHHHHHhcC-C-ceecC---CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 153 LKQRHRKLVSGLEKAG-I-SCLKS---NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g-~-~~~~~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
++++++++.+.|+++| + ++..+ .++.++++.++... +..+++..|. +.||.+.||..+ .+++||
T Consensus 268 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~-~~gi~~~~g~~~----~~~iRi 336 (362)
T 2c0r_A 268 NRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE------LEKEFVKASE-QEGFVGLKGHRS----VGGLRA 336 (362)
T ss_dssp HHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH------HHHHHHHHHH-HTTEESCBCCTT----TCSEEE
T ss_pred HHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcc------hHHHHHHHHH-HCCCeeccCCCC----CCEEEE
Confidence 9999999999999886 6 65422 23345677776421 2345777664 679999888765 357999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|++. +++++++++++.|++++++
T Consensus 337 s~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 337 SIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9975 6899999999999988764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-20 Score=166.50 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=138.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCC-CccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNP-LGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NP-tG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.+.++...+++++|+|+ ||.++ +++++++|.++ ++||+++|+||+|.++ ..+.. ...+...
T Consensus 189 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~--~~~~~~~-------- 256 (424)
T 2e7u_A 189 LREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG--GATELLG-------- 256 (424)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT--HHHHHHT--------
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh--HHHHHhC--------
Confidence 4555553212234466778654 89755 79999999999 9999999999999976 43331 1122211
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-c----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-M----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
....+.||||++| +|+|+||+++++ .+.+.+.. . ...+..|++.+.++.++++.. .+ ..+..++++
T Consensus 257 ---~~~di~s~sK~l~-~G~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~-~~~~~~~~~ 327 (424)
T 2e7u_A 257 ---LKPDLVTLGKILG-GGLPAAAYAGRR-EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE-NPGYYAYLE 327 (424)
T ss_dssp ---CCCSEEEECGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH-CTHHHHHHH
T ss_pred ---CCcchhhhhhhhh-CCcceEEEEEcH-HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh-ccHHHHHHH
Confidence 1111449999999 699999999964 45444433 1 122346778888877777632 11 134556666
Q ss_pred HHHHHHHHHHHhc----CCce-ecCCceEEEEEecCccc-cC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 155 QRHRKLVSGLEKA----GISC-LKSNAGLFCWVDMRHLL-SS------NTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 155 ~~~~~l~~~l~~~----g~~~-~~~~~g~~~~i~~~~~~-~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
++.+++.+.|++. ++.. ..+. |.++|++++... .. .......++...|+ ++||.+.|+..
T Consensus 328 ~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------ 399 (424)
T 2e7u_A 328 DLGARLEAGLKEVLKEKGLPHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF------ 399 (424)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS------
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC------
Confidence 6666777766653 5532 3344 457888886410 00 00122346777777 67999998752
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
..+|+++. .+++++++++++|+++
T Consensus 400 ~~~~~~~~-~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 400 EAAFLSVA-HREEDVEKTLEALRKA 423 (424)
T ss_dssp SCEECCTT-CCHHHHHHHHHHHHHH
T ss_pred CceEeecc-CCHHHHHHHHHHHHHh
Confidence 24677754 6999999999999875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=165.89 Aligned_cols=231 Identities=16% Similarity=0.230 Sum_probs=146.2
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCC----------CccCCCCccChhh
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSG----------TVFSSPGFVSIME 68 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~----------~~~~~~~~~~~~~ 68 (289)
+++++..+ +++++|++++|+||+ |.+++.+++++|.++|++||+++|+|+++.. ..+.+. +...
T Consensus 172 Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~---~~~~ 248 (467)
T 2oqx_A 172 LERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW---TIEQ 248 (467)
T ss_dssp HHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS---CHHH
T ss_pred HHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc---cHHH
Confidence 45666542 368999999999998 9999999999999999999999999977653 122222 3333
Q ss_pred hhhccccccCCCCCceEEEecCccccCCC-CceEEEEEecCH---HHHHHHHhc----cc---cCCCChHHHHHHHHHhC
Q 044773 69 ILKDRNCENTEVWNRVHIVYSLSKDLGLP-GFRVGAIYSNDD---TVVAAATKM----SS---FGLVSSQTQYLLSALLS 137 (289)
Q Consensus 69 ~~~~~~~~~~d~~~~~i~i~s~sK~~g~~-G~r~G~i~~~~~---~~~~~~~~~----~~---~~~~~~~~q~~~~~~l~ 137 (289)
+..+. + +..+ +++.|+||.+|++ | ||++++++ .....+... .. +...+.....++...+.
T Consensus 249 ~~~~~-~---~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~ 319 (467)
T 2oqx_A 249 ITRET-Y---KYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY 319 (467)
T ss_dssp HHHHH-G---GGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH
T ss_pred Hhhhh-h---ccCC--eEEEecccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH
Confidence 21000 0 0112 4578999999877 6 88888766 222222221 11 11112222222222111
Q ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCc---cccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 138 DKKFAQNYIS-ENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH---LLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
.+++ +..+..+++.+++.+.|++.|+++. +.+++++|++++. ..+...+ +..+++..|+.++||.+.|
T Consensus 320 ------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~ 391 (467)
T 2oqx_A 320 ------DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQF-PAQALACELYKVAGIRAVE 391 (467)
T ss_dssp ------HTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEE
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccc-cHHHHHHHHHHhcCceecc
Confidence 1111 2334456778888999988788877 7788899998853 1111111 1345677775678999998
Q ss_pred CCCC--CC---------CCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 214 GSSC--HC---------TEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 214 g~~f--~~---------~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
+..| +. ...+++||+++. ++++++++++++|++++++..
T Consensus 392 ~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp ESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred cccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 5532 11 123799999973 589999999999999987643
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=153.63 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=132.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+. . +. . .
T Consensus 130 l~~~i~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~-~---~~-~------------~ 187 (386)
T 1cs1_A 130 LRAALA--EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ-N---PL-A------------L 187 (386)
T ss_dssp HHHHHH--TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C---GG-G------------G
T ss_pred HHHhhc--cCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C---cc-c------------c
Confidence 445554 46899999999999999998 899999999999999999999875432 1 11 1 2
Q ss_pred CceEEEecCccccCCCCceE-EEEEecCHHHHHHHHhccc-c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRV-GAIYSNDDTVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+.++++.|+||.++.+|.|+ ||++++++.+.+.+..... + ...+++.+.++...++. +....+.+.++.+
T Consensus 188 ~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~ 260 (386)
T 1cs1_A 188 GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQ 260 (386)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHH
T ss_pred CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-------HHHHHHHHHHHHH
Confidence 56789999999998889887 9999977555554443322 2 33566776666555543 2334445666677
Q ss_pred HHHHHHHhcC-Ccee------------------cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-
Q 044773 159 KLVSGLEKAG-ISCL------------------KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH- 218 (289)
Q Consensus 159 ~l~~~l~~~g-~~~~------------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~- 218 (289)
.+.+.|++++ +... ...+++ +.+.+... . ..+.. .+++.||.+.+++ +|
T Consensus 261 ~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~------~~~~~-~l~~~gi~~~~~~-~g~ 329 (386)
T 1cs1_A 261 AIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM-LSFELDGD--E------QTLRR-FLGGLSLFTLAES-LGG 329 (386)
T ss_dssp HHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEESSC--H------HHHHH-HHHTCSSSEEBSC-CCS
T ss_pred HHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceE-EEEEECCC--H------HHHHH-HHHhCCcceEccc-CCC
Confidence 7777776642 1111 112444 44555431 1 22444 4567899887431 22
Q ss_pred ------------------------CCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 219 ------------------------CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 219 ------------------------~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
...++++||+++. ++.++.++++.+++++
T Consensus 330 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA 382 (386)
T ss_dssp SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 0125799999985 4455555555555544
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=161.91 Aligned_cols=220 Identities=12% Similarity=0.093 Sum_probs=142.8
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++++|++++|+||++. ++++|.++|+++|+++|+|++|.. +.+.+.....+ +
T Consensus 177 l~~~i~~~-~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~----~--------- 237 (447)
T 3h7f_A 177 VRATALEF-RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV----P--------- 237 (447)
T ss_dssp HHHHHHHH-CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST----T---------
T ss_pred HHHHHHhc-CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC----C---------
Confidence 44555443 6789999999999876 499999999999999999999853 22333221111 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-ccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..++++.|+||+++ |.|.||++++++. .+.+... ..+ +..+.....+++.++.... ..++++..+.+.+++
T Consensus 238 -~~di~~~s~sK~l~--G~~gG~i~~~~~~-~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~--~~~~~~~~~~~~~~~ 311 (447)
T 3h7f_A 238 -HADVVSTTVHKTLG--GGRSGLIVGKQQY-AKAINSAVFPGQQGGPLMHVIAGKAVALKIAA--TPEFADRQRRTLSGA 311 (447)
T ss_dssp -TCSEEEEESSGGGC--CCSCEEEEECGGG-HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred -CCcEEEecCCcCCC--CCCeEEEEECHHH-HHHHhhhcCCcccCCccHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHH
Confidence 22377999999984 6788999996544 3333322 222 2223333444444443211 334677888899999
Q ss_pred HHHHHHHHhc-----CCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEE
Q 044773 158 RKLVSGLEKA-----GISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRV 227 (289)
Q Consensus 158 ~~l~~~l~~~-----g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~~Ri 227 (289)
+++.+.|.+. |+++.. +..++++|+++...... .+.+..+++++||.+. |+..+++..+.++||
T Consensus 312 ~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRi 385 (447)
T 3h7f_A 312 RIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD------GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRI 385 (447)
T ss_dssp HHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC------HHHHHHHHHHTTEECBC-------------CEEEE
T ss_pred HHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC------HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceec
Confidence 9999999887 888764 34566788887643211 2355566778899998 664334444678999
Q ss_pred EEec-----CCHHHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-----MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 228 s~~~-----~~~e~l~~~l~~l~~~l~~~~ 252 (289)
++.. .++++++++++.|.+++.+..
T Consensus 386 g~~~~~~~~~~~eei~~~~~~l~~~l~~~~ 415 (447)
T 3h7f_A 386 GTPALATRGFGDTEFTEVADIIATALATGS 415 (447)
T ss_dssp ECHHHHHHTCCHHHHHHHHHHHHHHHHSGG
T ss_pred cCHHHhhCCCCHHHHHHHHHHHHHHHhccC
Confidence 9843 468999999999999887653
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=156.15 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=146.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++... ++++|++ +|+|+ |...+ +++|.++|+++|+++|+|++|....... .... ..+ .
T Consensus 155 l~~~i~~~-~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~-~~~-~---------- 215 (405)
T 2vi8_A 155 VREKARLH-RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAA-GLHP-NPV-P---------- 215 (405)
T ss_dssp HHHHHHHH-CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSC-CST-T----------
T ss_pred HHHHHHhc-CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEcccccccccc-CcCC-Ccc-c----------
Confidence 34555532 5788776 56554 44445 8999999999999999999998422211 1111 111 1
Q ss_pred CceEEEecCccccC-CCCceEEEEEecCHHHHHHHHhcc-cc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMS-SF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 82 ~~~i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..++++.|+||.++ ..| ||++++ +.+.+.+.... .+ +..++....++..+++... ..++++.++++++++
T Consensus 216 ~~di~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~ 289 (405)
T 2vi8_A 216 YAHFVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--QDDFKAYAKRVVDNA 289 (405)
T ss_dssp TCSEEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Confidence 22388999999997 556 999996 45555444332 22 2223444444445554321 245678888999999
Q ss_pred HHHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC----CCCCCCCeEEEEEec-
Q 044773 158 RKLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS----CHCTEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~----f~~~~~~~~Ris~~~- 231 (289)
+++.+.|++.|+++..+ .+++++|+.++... .+..++...| .++||.+.||.. ++...++++||+++.
T Consensus 290 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~ 363 (405)
T 2vi8_A 290 KRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ-----LTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363 (405)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHH
T ss_pred HHHHHHHHhCCCeEecCCCCceEEEEEccCCC-----CCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeee
Confidence 99999999888888765 45788899887421 1123466655 577999999863 333345789999973
Q ss_pred ----CCHHHHHHHHHHHHHHHHHH
Q 044773 232 ----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ----~~~e~l~~~l~~l~~~l~~~ 251 (289)
++++++++++++|++++++.
T Consensus 364 ~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 364 TTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred eecCCCHHHHHHHHHHHHHHHhcc
Confidence 57999999999999987644
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=155.91 Aligned_cols=219 Identities=11% Similarity=0.098 Sum_probs=152.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++... ++++|++++++||||.+++.+++++|.++|+++|+++|+|++++ . + ....+..+
T Consensus 127 l~~~i~~~-~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~-~~~~~~~~------------ 188 (379)
T 3ke3_A 127 AVAKIKED-KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---C-VWLDMKEL------------ 188 (379)
T ss_dssp HHHHHHHH-TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---T-CCCCHHHH------------
T ss_pred HHHHHhhc-CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---C-cccccccc------------
Confidence 34555432 68899999999999999999999999999999999999999986 2 2 22233322
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc--cc---------------------c-CCCChHHHHHHHHHhC
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SS---------------------F-GLVSSQTQYLLSALLS 137 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~---------------------~-~~~~~~~q~~~~~~l~ 137 (289)
+.++++.|++|.++ .+..+|+++++++. .+.+... .+ + ++.+.....++..+++
T Consensus 189 ~~d~~~~s~~K~l~-~~~g~g~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~ 266 (379)
T 3ke3_A 189 GIDVLISAPQKGWS-STPCAGLVMLSAAA-IKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAIL 266 (379)
T ss_dssp TCSEEEECTTTTTC-SCCCEEEEEECHHH-HHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEecchhhcC-CCCceEEEEECHHH-HHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Confidence 45688999999997 44458999996544 3333220 00 1 2345566666666665
Q ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 138 DKKFAQNY-ISENKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 138 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
.. .+. +++..++++++++++.+.|+++|+++..+.+ +....+..+.. ....... +.++||.+.+
T Consensus 267 ~~---~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~-L~~~Gi~v~~ 334 (379)
T 3ke3_A 267 EA---KEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD--------DMHKGSA-FAEAGLQIAA 334 (379)
T ss_dssp HH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--------HHHSSHH-HHHTTCCCEE
T ss_pred HH---HHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--------chHHHHH-HHHCCeEEeC
Confidence 32 333 6778888999999999999998888765542 22232333211 1112333 4577999999
Q ss_pred CCCCCC---CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 214 GSSCHC---TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 214 g~~f~~---~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
|..+.. ...+.+||++.. ++++++++++++|++++++..
T Consensus 335 g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 335 GVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 987643 236799999953 689999999999999987654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-20 Score=168.96 Aligned_cols=207 Identities=11% Similarity=0.028 Sum_probs=127.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ....++. .. .++++.|
T Consensus 158 ~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~----~~~~~~~------------~~-~d~~~~s 217 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYG----KVPGDLT------------TP-IDMISIS 217 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTT----TSGGGGG------------SC-CSEEEEE
T ss_pred CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcC----CCCcChh------------hc-CcEEEEe
Confidence 46899999999999999999 899999999999999999999832 1111111 11 4588999
Q ss_pred CccccCCCCceEEEEE-ecCHHH-------HHHHH-----hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIY-SNDDTV-------VAAAT-----KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~-~~~~~~-------~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+||.+|.+| +|+++ ++++.+ ..... .....+..+...+.++..+++. +.+++++.+++++++
T Consensus 218 ~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~ 292 (400)
T 3vax_A 218 GHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQDL 292 (400)
T ss_dssp TGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHHHH
T ss_pred HHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHHHH
Confidence 999777555 67777 755211 11110 0111233455666666666653 244578889999999
Q ss_pred HHHHHHHHHhcCCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-------------
Q 044773 157 HRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT------------- 220 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------------- 220 (289)
++++.+.|+..|+++..+.+ +.++++.++.. +..++...|. +||.+.+|..|...
T Consensus 293 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~ 363 (400)
T 3vax_A 293 RSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-------DAEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGL 363 (400)
T ss_dssp HHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTC
T ss_pred HHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCC
Confidence 99999999833788777664 23555666531 1245666665 69999998765431
Q ss_pred -C---CCeEEEEE-ec-CCHHHHHHHHHHHHHHHHH
Q 044773 221 -E---PGWFRVCF-AN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 221 -~---~~~~Ris~-~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
. ++++||++ +. .+++++++++++|++++++
T Consensus 364 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 364 PEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp CHHHHTSEEEEEEEEC--------------------
T ss_pred CccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 48999999 64 5789999999999988754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-18 Score=155.87 Aligned_cols=220 Identities=10% Similarity=0.027 Sum_probs=147.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.+. ++++|++++|+| |.+++ +++|.++|+++|+++|+|++|.. ..+.+..... .
T Consensus 156 l~~~i~~~-~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--------------~ 215 (417)
T 3n0l_A 156 VREIAKKE-KPKLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--------------F 215 (417)
T ss_dssp HHHHHHHH-CCSEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--------------T
T ss_pred HHHHHHhc-CCeEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--------------c
Confidence 45555533 689999888886 78888 99999999999999999999752 2232222111 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
...+++++|+||.+ +|.|.||++++++.+.+.+...... +..+...+.++..++... +.+.+++.++++++++
T Consensus 216 ~~~di~~~s~sK~l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~ 291 (417)
T 3n0l_A 216 PYAHVVSSTTHKTL--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNA 291 (417)
T ss_dssp TTCSEEEEESSTTT--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHH
T ss_pred ccceEEEeeCcccc--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHH
Confidence 13458899999988 6677899999766666655543222 223344444544444321 1344677888889999
Q ss_pred HHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----CCCCeEEEEEec-
Q 044773 158 RKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC----TEPGWFRVCFAN- 231 (289)
Q Consensus 158 ~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~~~Ris~~~- 231 (289)
+++.+.|.+.|+++.. +..+.++|+.+...... . +.+..+++++||.+.++..+.. .....+|+++..
T Consensus 292 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~ 365 (417)
T 3n0l_A 292 QVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFS-----G-KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPAL 365 (417)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSSC-----H-HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHH
T ss_pred HHHHHHHHhCCceeccCCCCceEEEEEcccCCCC-----H-HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHH
Confidence 9999999988887665 23456777887642111 1 2344455688999987654332 123679999853
Q ss_pred ----CCHHHHHHHHHHHHHHHHHH
Q 044773 232 ----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ----~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+++++++++++|+++++..
T Consensus 366 ~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 366 TARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHhcc
Confidence 35799999999999998754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=164.31 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=142.8
Q ss_pred hHHHhhhC-CCccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++.++ +++++|+ ++| +||+| .+++++++++|.++|+++|+++|+||+|+++++.|.. ... +...
T Consensus 221 le~~i~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~-~~~~------- 290 (449)
T 2cjg_A 221 ARAAFETRPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTA-WAY-QQLD------- 290 (449)
T ss_dssp HHHHHHHSTTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-STH-HHHT-------
T ss_pred HHHHHHhcCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcc-eee-cccC-------
Confidence 55666542 4566655 556 79999 5999999999999999999999999999987665542 122 2211
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHH-----HHh--ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAA-----ATK--MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~-----~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
.. ..+.||||.+ |+||++++++ +.+. ... ....+..|++.+.++.++++... + .+..+
T Consensus 291 -~~---~di~t~sK~l-----~iG~~~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~---~--~~~~~ 355 (449)
T 2cjg_A 291 -VA---PDIVAFGKKT-----QVCGVMAGRR-VDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIE---A--EGLFE 355 (449)
T ss_dssp -CC---CSEEEECGGG-----SSEEEEECGG-GGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHH---H--HTHHH
T ss_pred -CC---ceEEEecCcc-----cEEEEEECHH-HhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHH---h--ccHHH
Confidence 11 1134799998 6899999654 4432 111 11233467888888888876321 1 23456
Q ss_pred HHHHHHHHHHHHHHhc----C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 152 RLKQRHRKLVSGLEKA----G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~----g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
+++++.+++.+.|+++ . +....+.|. +++++++.. .+..+++..|+ ++||.+.|+. .+++
T Consensus 356 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~~~~~~------~~~~~~~~~l~-~~Gv~v~~~g------~~~i 421 (449)
T 2cjg_A 356 RAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAFSLPTT------ADRDELIRQLW-QRAVIVLPAG------ADTV 421 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEEECSSH------HHHHHHHHHHH-HTTEECEEET------TTEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEEEECCh------HHHHHHHHHHH-HCCeEEecCC------CCEE
Confidence 6677777777777653 2 334455554 555787642 12346888887 5799999862 4799
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
||+++. ++++++++++++|++++++
T Consensus 422 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 422 RFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 998753 6999999999999998865
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-19 Score=155.47 Aligned_cols=199 Identities=16% Similarity=0.157 Sum_probs=128.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||||.+++ +++|.++|++ +|+++|+|++|....+. . ++ + .+.++++.
T Consensus 82 ~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~-~---~~-~------------~~~d~~~~ 141 (331)
T 1pff_A 82 PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT-N---PL-D------------LGVDIVVH 141 (331)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-C---GG-G------------GTCSEEEE
T ss_pred CCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC-C---hh-h------------cCCcEEEE
Confidence 47899999999999999998 9999999999 99999999999854331 1 11 1 25679999
Q ss_pred cCccccCCCCce-EEEEEecCHHHHHHHHhcccc---CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFR-VGAIYSNDDTVVAAATKMSSF---GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g~~G~r-~G~i~~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|+||.+|.+|.| .||++++++.+.+.+...... ...+++.+.++...++. .....+...++.+.+.+.+
T Consensus 142 s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~l 214 (331)
T 1pff_A 142 SATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-------LDMRVKRAAENAQKVAEFL 214 (331)
T ss_dssp ETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred ECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-------HHHHHHHHHHHHHHHHHHH
Confidence 999999989999 799999653666666554333 23566666665555442 1222233334444444444
Q ss_pred Hhc---------------CCceec----CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-------
Q 044773 165 EKA---------------GISCLK----SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH------- 218 (289)
Q Consensus 165 ~~~---------------g~~~~~----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------- 218 (289)
++. ++++.. ..++ ++.+.+.. .+....++++.||.+++++.-+
T Consensus 215 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~ 283 (331)
T 1pff_A 215 HEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGS-MIAFDVDG----------LEKAKKVLDNCHVVSLAVSLGGPESLIQH 283 (331)
T ss_dssp HHCTTCCCEECTTSTTSTTHHHHHHHCSSCCS-EEEEECSS----------HHHHHHHHHTCSSSEECSSCCSSSCEEEC
T ss_pred HcCCCeeEEECCCCCCCccHHHHHhhCCCCce-EEEEEECC----------HHHHHHHHHhCCCceeccCCCCcceeeec
Confidence 332 122211 1233 44566541 1233445568899887653211
Q ss_pred -----------------CCCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 219 -----------------CTEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 219 -----------------~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
...++++||+++. +++++++.+++.|++
T Consensus 284 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 284 PASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred chhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 0125799999976 577788888877764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=164.78 Aligned_cols=219 Identities=11% Similarity=0.075 Sum_probs=136.8
Q ss_pred hHHHhhhC-CCccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH-LKVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++.++ +++++ ++++| +||||.+ .+++++++|.++|++||+++|+||+|.++ +.+.. ...+...
T Consensus 191 le~~l~~~~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~--~~~~~~~------- 259 (453)
T 2cy8_A 191 MREVFANHGSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH--GMQALLD------- 259 (453)
T ss_dssp HHHHHHHHGGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT--HHHHHHT-------
T ss_pred HHHHHHhcCCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch--hhhHHhC-------
Confidence 45555543 24555 55666 5789975 47999999999999999999999999976 44431 1111211
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCC-chHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSD-KKFAQNYISENK 150 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~ 150 (289)
....+.||||+++ +|+|+||+++++ .+.+.+.. ....+..|++.+.++.++++. . . .+..
T Consensus 260 ----~~~di~s~sK~l~-~G~~~G~v~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~-----~~~~ 327 (453)
T 2cy8_A 260 ----VQPDLTCLAKASA-GGLPGGILGGRE-DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E-----DDVC 327 (453)
T ss_dssp ----CCCSEEEEEGGGG-TTSSCEEEEECH-HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-----TTHH
T ss_pred ----CCCcEEEEChhhh-CCcceEEEechH-HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-----hhHH
Confidence 1112448999998 699999999964 44443332 112234778888877776654 2 1 2233
Q ss_pred HHHHHHHHHHHHHHHhc----CCceecCCceEEEEEecCc-----c-----cc---CCChhhHHHHHHHHHHhcCeEEeC
Q 044773 151 KRLKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRH-----L-----LS---SNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~-----~-----~~---~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
++++++.+++.+.|++. ++....+..|.++|++++. . .. ........+++..|+ ++||.+.|
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~ 406 (453)
T 2cy8_A 328 AKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGG 406 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeC
Confidence 44555555555555443 4433223334577888874 1 00 001122346777777 56999965
Q ss_pred CCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+ +.+|+++. .+++++++++++|++++++...
T Consensus 407 ~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 407 R--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp T--------TEEECCTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------CCEEeecc-CCHHHHHHHHHHHHHHHHHHHh
Confidence 3 24677644 6999999999999999887643
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=163.93 Aligned_cols=213 Identities=9% Similarity=-0.006 Sum_probs=147.6
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++.++ +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. +.....+.++
T Consensus 204 l~~~i~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~----g~~~~~~~~~----------- 265 (465)
T 3e9k_A 204 ILEVIEKEGDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV----GNVELYLHDW----------- 265 (465)
T ss_dssp HHHHHHHHGGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHH-----------
T ss_pred HHHHHHhcCCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCchhhc-----------
Confidence 44555533 57899999999999999999 89999999999999999999984 3333333333
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--------------------------ccCCCChHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--------------------------SFGLVSSQTQYLLSA 134 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--------------------------~~~~~~~~~q~~~~~ 134 (289)
+.+++++|++|.++.+..++|+++++++.+........ ..++.+.+...++.+
T Consensus 266 -~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~a 344 (465)
T 3e9k_A 266 -GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHA 344 (465)
T ss_dssp -TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHH
T ss_pred -CCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHH
Confidence 55688999999993223378999986544321110000 011344455555555
Q ss_pred HhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHh-----------cCCceecCC----ceEEEEEecCccccCCChhhHHH
Q 044773 135 LLSDKKFAQNY-ISENKKRLKQRHRKLVSGLEK-----------AGISCLKSN----AGLFCWVDMRHLLSSNTFEAEME 198 (289)
Q Consensus 135 ~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~-----------~g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~ 198 (289)
+++.. .++ +++.+++++++++++.+.|++ .|+++..|. .|.++++.++. +. .+
T Consensus 345 al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--~~------~~ 413 (465)
T 3e9k_A 345 SLEIF---KQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--PN------KD 413 (465)
T ss_dssp HHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--TT------CC
T ss_pred HHHHH---HHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--CH------HH
Confidence 55532 333 788889999999999999987 477777765 25566777762 21 23
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE--ecCCHHHHHHHHHHHHHHHHHH
Q 044773 199 LWKKIVYDVKLNISPGSSCHCTEPGWFRVCF--ANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 199 ~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~--~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+...|. ++||.+.. ..++++||++ ..+++++++++++.|++++++.
T Consensus 414 l~~~L~-~~Gi~v~~------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 414 VFQELE-KRGVVCDK------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHH-TTTEECEE------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHH-HCCEEEec------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 667666 56999873 2357999998 3379999999999999988654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=157.16 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=83.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN-IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~-~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++|+||||.+++ +++|+++|+++| +++|+|++|....+. . ++ ..+.++++.
T Consensus 150 ~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~-~---~~-------------~~~~div~~ 209 (403)
T 3cog_A 150 PETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ-R---PL-------------ALGADISMY 209 (403)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC-C---TT-------------TTTCSEEEE
T ss_pred cCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC-C---cc-------------ccCCeEEEE
Confidence 47899999999999999998 999999999999 999999999875331 1 11 124669999
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHhccc-c-CCCChHHHHHHHHHhCC
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-F-GLVSSQTQYLLSALLSD 138 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~-~~~~~~~q~~~~~~l~~ 138 (289)
|+||.++.+| .++||++++++.+.+.+..... + ...+++.+.++...++.
T Consensus 210 S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 210 SATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp ETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred cChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 9999998666 5799999976666555543322 2 23567777777777765
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=164.53 Aligned_cols=212 Identities=13% Similarity=0.081 Sum_probs=147.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++| ||+|.+. +++++|.++|+++|+++|+|++|....+ + ..+...+ +.++++.|
T Consensus 202 ~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~-g--~~~~~~~------------g~di~~~s 263 (474)
T 1wyu_B 202 PHVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIM-G--WARPGDM------------GFDVVHLN 263 (474)
T ss_dssp TTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTT-T--TCCHHHH------------TCSEEECC
T ss_pred CCceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhc-c--CCCcccC------------CCcEEEEe
Confidence 46899999998 6899883 3599999999999999999999975433 2 1122222 45688999
Q ss_pred CccccCCC-C---ceEEEEEecCHHHHHHHH-hc--------------------cccCCCChHHHHHHHHHhCCchHHHH
Q 044773 90 LSKDLGLP-G---FRVGAIYSNDDTVVAAAT-KM--------------------SSFGLVSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 90 ~sK~~g~~-G---~r~G~i~~~~~~~~~~~~-~~--------------------~~~~~~~~~~q~~~~~~l~~~~~~~~ 144 (289)
+||+++.| | .|+||++++++.+ +.+. .. ....+.+.+.+.++..++.... .+
T Consensus 264 ~~K~~~~p~g~gG~~~G~~~~~~~l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g--~~ 340 (474)
T 1wyu_B 264 LHKTFTVPHGGGGPGSGPVGVKAHLA-PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG--LE 340 (474)
T ss_dssp TTTTTCCCCTTSCCCCCCEEECGGGG-GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH--HH
T ss_pred CccccccCCCCCCCCeEEEEEcHHHH-HhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH--HH
Confidence 99999766 4 6999999976543 3222 10 0111245566666666665422 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE-EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF-CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.+++..+++.++++++.+.|++.|+++..+...+. .|++++.. .+..+++..|++ +||.+ |+..|+....+
T Consensus 341 ~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~-~Gi~~-~~~~~~~~~~~ 412 (474)
T 1wyu_B 341 GLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEG------FRALDLAKGLLE-LGFHP-PTVYFPLIVKE 412 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTT------CCHHHHHHHHHH-TTCCC-CEESCSTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCC------CCHHHHHHHHHH-CCccc-cccccccccCC
Confidence 57888889999999999999988777633332221 45565221 123568888874 59985 66666433467
Q ss_pred eEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
++||+++. ++++++++++++|++++++
T Consensus 413 ~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 413 ALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 89999974 5899999999999998876
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=159.64 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=148.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++|+|++ +++||+ .+++ +++|.++|+++|+++|+|++|.. +...+....++ +
T Consensus 185 le~~i~~~-~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~----~--------- 245 (483)
T 1rv3_A 185 LEENARLF-HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF----E--------- 245 (483)
T ss_dssp HHHHHHHH-CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG----G---------
T ss_pred HHHHHhhc-CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC----C---------
Confidence 45555533 6899888 899988 8888 99999999999999999999873 22222211111 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCH--------------HHHHHHHhc--cc-cCCCChHHHHHHHHHhCCchHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDD--------------TVVAAATKM--SS-FGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~--------------~~~~~~~~~--~~-~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
..++++.|+||++ .|.|.||++++++ .+...+... .. .++.+.....+++.+++... .
T Consensus 246 -~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~ 320 (483)
T 1rv3_A 246 -HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--T 320 (483)
T ss_dssp -TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--S
T ss_pred -CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--C
Confidence 2347889999988 4667799999764 233333221 11 22234445555555554321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCH 218 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~ 218 (289)
..+++..++++++++++.+.|.+.|+++..+. +++++|+++..... +..++ ..++++.||.+. ||..+
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~-----~~~~~-~~~L~~~gI~v~~~~~pg~~~- 393 (483)
T 1rv3_A 321 PEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGT-----DGGRA-EKVLEACSIACNKNTCPGDKS- 393 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTC-----CHHHH-HHHHHHTTEECEEECCSSCSC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCC-----CHHHH-HHHHHhCCcEEecCCCCCCCc-
Confidence 34577888899999999999998898877653 34677888864211 11234 445568899999 88742
Q ss_pred CCCCCeEEEEEec-CC----HHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MS----EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~----~e~l~~~l~~l~~~l~~ 250 (289)
+.+++++||+++. ++ ++++++++++|.++++.
T Consensus 394 ~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 394 ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 2346799999964 35 89999999999999876
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-18 Score=159.56 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=150.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-----CCCccChhhhhhccccc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-----SPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-----~~~~~~~~~~~~~~~~~ 76 (289)
+++++. +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.++.+. |.....+. .
T Consensus 232 Le~~i~--~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~-~------- 298 (514)
T 3mad_A 232 MREAIT--PNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD-F------- 298 (514)
T ss_dssp HHHHCC--TTEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS-T-------
T ss_pred HHHHhc--cCCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc-c-------
Confidence 344444 46899999999999999998 899999999999999999999976431 21111111 1
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc---------c---cCCCChHHHHHHHHHhCCchHHHH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS---------S---FGLVSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~---------~---~~~~~~~~q~~~~~~l~~~~~~~~ 144 (289)
...+.++++.|++|.++ +|.++|+++++++.+........ . .+..+.....++..++.... ..
T Consensus 299 --~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~--~~ 373 (514)
T 3mad_A 299 --RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG--EE 373 (514)
T ss_dssp --TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH--HH
T ss_pred --cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh--HH
Confidence 13356788999999975 77889999998776544221111 0 11122222233333333211 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
.+++..+++.++++++.+.|++. ++++..+..+ ++++.... . +..++...|. ++||.+ +|..| ++
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~-~------~~~~l~~~L~-~~Gi~v-~g~~~----~~ 439 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDE-L------NIYQVMEEMA-GRGWRL-NGLHR----PP 439 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSS-S------CHHHHHHHHH-TTTCBC-EEETT----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCC-C------CHHHHHHHHH-hcCCEe-ccCCC----CC
Confidence 46778888899999999999987 8888776665 55565432 1 2245777776 559988 45444 35
Q ss_pred eEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 224 ~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
++|+++.. ++++++++++++|++++++...
T Consensus 440 ~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 440 AFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp EEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999963 3669999999999999988765
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-18 Score=153.48 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=129.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. . ++ . .+.++++.|
T Consensus 149 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~-~---~~-~------------~~~d~~~~S 208 (398)
T 1gc0_A 149 PATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ-R---PL-E------------LGADLVVHS 208 (398)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC-C---GG-G------------GTCSEEEEE
T ss_pred CCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccC-C---ch-h------------hCceEEEEC
Confidence 47899999999999999998 999999999999999999999865332 1 11 1 245689999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccc--c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSS--F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~--~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.+|.+|.|+ ||++++++.+...+..... + +..+++.+.++...++.. ....+...++.+.+.+.|.
T Consensus 209 ~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~l~~~L~ 281 (398)
T 1gc0_A 209 ATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL-------NLRMDRHCANAQVLAEFLA 281 (398)
T ss_dssp TTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHh
Confidence 999999899998 9999966555434433222 2 236677777766666542 3334445556666666666
Q ss_pred hcC---------------Cceec----CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC---CCCC------
Q 044773 166 KAG---------------ISCLK----SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP---GSSC------ 217 (289)
Q Consensus 166 ~~g---------------~~~~~----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p---g~~f------ 217 (289)
+++ +++.. ..++++. +++... .+.+..++++.++.+.. |+..
T Consensus 282 ~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~---------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~ 351 (398)
T 1gc0_A 282 RQPQVELIHYPGLASFPQYTLARQQMSQPGGMIA-FELKGG---------IGAGRRFMNALQLFSRAVSLGDAESLAQHP 351 (398)
T ss_dssp TCTTEEEEEEC----------------CCTTEEE-EEETTH---------HHHHHHHHHHCSSSEECSCCSCSSCEEECG
T ss_pred cCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEE-EEECCC---------HHHHHHHHHhCCCceeccCCCCcceeeecc
Confidence 531 11221 2344444 455421 12455566788888765 3210
Q ss_pred ------CC---------CCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 218 ------HC---------TEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 218 ------~~---------~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
.. ..++.+|||++. +++++++.+.+.|++
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 352 ASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp GGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 00 124799999976 456667776666654
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=160.12 Aligned_cols=213 Identities=13% Similarity=0.204 Sum_probs=135.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++++. +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+. . ++ . .
T Consensus 159 l~~ai~--~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~-~---~~-~------------~ 216 (414)
T 3ndn_A 159 WERALS--VPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ-Q---GF-P------------L 216 (414)
T ss_dssp HHHHTS--SCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC-C---CG-G------------G
T ss_pred HHHhcC--CCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC-C---ch-h------------c
Confidence 344443 47899999999999999988 899999999999999999999843221 1 11 1 1
Q ss_pred CceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-cccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-SSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
+.++++.|+||.+|.+| ++.|+++++++.+...+... ..++ ..++....++...++. +..+.+...++++
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~ 289 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET-------LAIRVQHSNASAQ 289 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHH
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 44688999999998778 89999999766554344322 2222 2344444333333332 3444555667778
Q ss_pred HHHHHHHhc-CCc-eecCC----------------ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-
Q 044773 159 KLVSGLEKA-GIS-CLKSN----------------AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC- 219 (289)
Q Consensus 159 ~l~~~l~~~-g~~-~~~~~----------------~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~- 219 (289)
.+.+.|+++ ++. +..|. .|..+++.++..... ...+..++...+ +..++.+.+|..+..
T Consensus 290 ~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~-~~~~~~~~~~~l-~~~~~~~s~G~~~sl~ 367 (414)
T 3ndn_A 290 RIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDV-AKQRAFEVLDKM-RLIDISNNLGDAKSLV 367 (414)
T ss_dssp HHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGG-HHHHHHHHHHHC-SSSEECSCCSCSSCEE
T ss_pred HHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccc-cHHHHHHHHHhC-ccceEcCCCCCCCcee
Confidence 888888776 332 22221 356788888642000 002223455544 355777777765432
Q ss_pred --------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 220 --------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 220 --------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
..++.+|||++. |+.+++++.|.+++
T Consensus 368 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 368 THPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp ECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred eCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 235789999997 55666666666654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=158.21 Aligned_cols=210 Identities=16% Similarity=0.124 Sum_probs=140.6
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC----------CEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKN----------IHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~----------~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++|++++|+||||.+++ +++|.++|++++ +++|+|++|... ....++..+
T Consensus 174 ~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~----~~~~~~~~~---------- 236 (432)
T 3a9z_A 174 PTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALG----KRRVDVEDL---------- 236 (432)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTT----TSCCCHHHH----------
T ss_pred CCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhC----CcccChhhc----------
Confidence 46899999999999999999 678899999999 999999999742 222233333
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHH---------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT---------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~---------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+..+++.|+||.+| .|+||++++++.....+. .....++.+.+.+.++.++++.. .+++++.+
T Consensus 237 --~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~---~~~~~~~~ 308 (432)
T 3a9z_A 237 --GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV---SENCETYE 308 (432)
T ss_dssp --CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred --CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH---HhhHHHHH
Confidence 22366899999875 459999997654111111 11112345667777776666532 44578888
Q ss_pred HHHHHHHHHHHHHHHhc-CCcee--cC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCL--KS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-- 220 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~--~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-- 220 (289)
++++++++++.+.|+++ |+++. .+ ..+..+++.+..... +..++...+ .+|.+.+|..|.+.
T Consensus 309 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l---~~i~~~~G~~~~~~~~ 380 (432)
T 3a9z_A 309 AHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL-----RGYMVLAQC---QTLLASVGASCHSDHE 380 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC-----CHHHHHHHC---SSEECBSSCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC-----cHHHHHHHh---cCeEEeccccccCCCC
Confidence 99999999999999885 65443 22 112234444543110 112333332 37877777655321
Q ss_pred ----------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 221 ----------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 221 ----------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+++||+++. ++++++++++++|++++++..
T Consensus 381 ~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 381 DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 13789999975 589999999999999987654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=151.37 Aligned_cols=210 Identities=17% Similarity=0.152 Sum_probs=130.9
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc----CCEEEEecCCCCCccCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK----NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~----~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++. +++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|..+.+. ...++
T Consensus 131 l~~~i~--~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~-------- 192 (393)
T 1n8p_A 131 LPQLIK--ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNF-------- 192 (393)
T ss_dssp HHHHSC--SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGG--------
T ss_pred HHHhcc--cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHc--------
Confidence 344444 47899999999999999998 99999999999 9999999999876442 11222
Q ss_pred CCCCCceEEEecCccccCCCCceE-EEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRV-GAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLK 154 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (289)
+.++++.|+||.+|.+|+|+ ||++++++.+.+.+..... ++ ..++....++...++. +....+...
T Consensus 193 ----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------~~~~~~~~~ 261 (393)
T 1n8p_A 193 ----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRVRQAA 261 (393)
T ss_dssp ----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred ----CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-------HHHHHHHHH
Confidence 46699999999999889999 9999965555555443322 22 2455555555555543 233344455
Q ss_pred HHHHHHHHHHHhcC--Cc-eecC---------------C--c-eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 155 QRHRKLVSGLEKAG--IS-CLKS---------------N--A-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 155 ~~~~~l~~~l~~~g--~~-~~~~---------------~--~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
++.+.+.+.|.+.+ +. +..| . . |..+++.++... .+...+...+ +..++.+..
T Consensus 262 ~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-----~~~~~~l~~l-~~~~~~~s~ 335 (393)
T 1n8p_A 262 LSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-----EAASKFASST-RLFTLAESL 335 (393)
T ss_dssp HHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-----HHHHHHHHHC-SSSEECSCC
T ss_pred HHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-----HHHHHHHhhC-CcceECCCC
Confidence 66666777776652 21 1111 1 1 446777776310 1222333332 233445443
Q ss_pred CC----------CCCC-----------CCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 214 GS----------SCHC-----------TEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 214 g~----------~f~~-----------~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
|+ .+.. ..++.+|||++. +++++++.+.++|++
T Consensus 336 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 336 GGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp CCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 42 1110 124789999986 455666666666654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=150.58 Aligned_cols=208 Identities=17% Similarity=0.149 Sum_probs=135.9
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|... +.... . ..+
T Consensus 145 ~~~i~--~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~-~~~~~----~------------~~~ 202 (392)
T 3qhx_A 145 RAAIR--PTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASP-ALQQP----L------------SLG 202 (392)
T ss_dssp HHHCC--TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCT-TTCCG----G------------GGT
T ss_pred HHhhC--CCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccc-ccCCh----H------------HhC
Confidence 44444 47999999999999999988 999999999999999999999843 21111 1 124
Q ss_pred ceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhccc-c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
.++++.|+||.+|.+| ++.||++++++.+.+.+..... + ...++..+.++...++.. ....+...++.+.
T Consensus 203 ~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~~~~ 275 (392)
T 3qhx_A 203 ADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL-------VLRMQRHSENAAA 275 (392)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHH
T ss_pred CcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH-------HHHHHHHHHHHHH
Confidence 5688999999998666 8999999986666655544322 2 336677777777777652 2334455666677
Q ss_pred HHHHHHhc-CCc-eecCC----------------ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--
Q 044773 160 LVSGLEKA-GIS-CLKSN----------------AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-- 219 (289)
Q Consensus 160 l~~~l~~~-g~~-~~~~~----------------~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-- 219 (289)
+.+.|+++ .+. +..|. .|..+++.++... .....+...+ +..++.+..|+.++.
T Consensus 276 l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~~l-~~~~~~~s~G~~~sl~~ 349 (392)
T 3qhx_A 276 VAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCAKT-NIFILAESLGSVESLIE 349 (392)
T ss_dssp HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHHHC-SSSEECSCCCCSSCEEE
T ss_pred HHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHHhC-CCceECCCCCCCCceee
Confidence 77777765 222 21111 1446677776421 1223344443 455777777765431
Q ss_pred ----------------CCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 220 ----------------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 220 ----------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
..++.+|||++. ++.++.++.+.+++
T Consensus 350 ~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 350 HPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp CGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred CcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 135789999986 45555555555544
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=151.29 Aligned_cols=210 Identities=14% Similarity=0.146 Sum_probs=135.2
Q ss_pred hHHHhhhCCCc-cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKV-KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~-~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
++++++. ++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... . .+ . .
T Consensus 192 l~~ai~~--~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~-~---~~-~------------~ 249 (445)
T 1qgn_A 192 LELALNQ--KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN-Q---KA-L------------A 249 (445)
T ss_dssp HHHHHHH--SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT-C---CT-T------------T
T ss_pred HHHHhcc--CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc-C---Cc-c------------c
Confidence 4555553 46 99999999999999998 89999999999999999999985321 1 11 1 1
Q ss_pred CCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-cccCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-SSFGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
.+.++++.|+||.+|..| +++||++++++ +.+.+... ..++. .+++....+...++. +..+.+.+.++.
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a 321 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTA 321 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHH-HHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHHH
Confidence 245688999999998554 57999999654 44433332 22332 344444444444432 233344556667
Q ss_pred HHHHHHHHhc-CC-ceecC----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 158 RKLVSGLEKA-GI-SCLKS----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 158 ~~l~~~l~~~-g~-~~~~~----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
+.+.+.|+++ ++ .+..| ..|.++++.++... .+...+...+ +..++.+..|..+..
T Consensus 322 ~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~l-~~~~i~~s~G~~~sl 395 (445)
T 1qgn_A 322 LRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDAL-KIPYIAPSFGGCESI 395 (445)
T ss_dssp HHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHHC-SSSEECSCCCSSSCE
T ss_pred HHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHhC-CCceEeccCCCCcee
Confidence 8888888876 34 33333 12445667776411 1122333332 234777777766531
Q ss_pred ---------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 ---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.+|||++. |+++.+++.|+++++.
T Consensus 396 ~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~---Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 396 VDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDS 444 (445)
T ss_dssp EECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 124799999995 6799999999888764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-17 Score=148.36 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=128.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+ +.+ + + .+.++++.|
T Consensus 143 ~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~-~~~---~-~------------~~~di~~~S 202 (389)
T 3acz_A 143 PNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCF-LKP---L-E------------LGADIALHS 202 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CCG---G-G------------TTCSEEEEE
T ss_pred CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-cCc---c-c------------cCCeEEEEC
Confidence 46899999999999999998 89999999999999999999986532 111 1 1 245689999
Q ss_pred CccccCCCCceE-EEEEecCHHHHHHHHhccc-c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRV-GAIYSNDDTVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g~~G~r~-G~i~~~~~~~~~~~~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+||.++.+|.|+ ||++++++.+.+.+..... + ...++..+.++...++.. . ...+...++.+.+.+.|++
T Consensus 203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---~----~r~~~~~~~~~~l~~~l~~ 275 (389)
T 3acz_A 203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL---P----IRMQIHMENGLKVAKFLEQ 275 (389)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---H----HHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHH---H----HHHHHHHHHHHHHHHHHHc
Confidence 999999899998 9999977344444433322 2 224556666666666542 2 2223334455556666655
Q ss_pred cC---------------Ccee----cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeC---C------CCCC
Q 044773 167 AG---------------ISCL----KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP---G------SSCH 218 (289)
Q Consensus 167 ~g---------------~~~~----~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p---g------~~f~ 218 (289)
++ +.+. ...++ ++.+.+.. . +....++++.||.+.+ | ..+.
T Consensus 276 ~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~-~~~~~l~~---~-------~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~ 344 (389)
T 3acz_A 276 HEKIVKVNHPGLESFPGHDIAKKQMTGYGS-TFLFEMKS---F-------EAAKKLMEHLKVCTLAVSLGCVDTLIEHPA 344 (389)
T ss_dssp CTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESS---H-------HHHHHHHTTCSSSEEBSCCCCSSCEEECTT
T ss_pred CCCeeEEECCCCCCCccHHHHHhhCCCCCe-EEEEEECC---H-------HHHHHHHHhCCCcEECcCCCCcccEeeCCc
Confidence 31 1111 11244 44466642 1 1344556678998876 3 2221
Q ss_pred C---------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 219 C---------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 219 ~---------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
. ..++.+|||++. ++.+++++.|.++++
T Consensus 345 ~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 345 SMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp TTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 1 125799999986 466777777777664
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=158.80 Aligned_cols=218 Identities=10% Similarity=0.046 Sum_probs=146.4
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-----CCCccChhhhhhccccc
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-----SPGFVSIMEILKDRNCE 76 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-----~~~~~~~~~~~~~~~~~ 76 (289)
+++++. +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.++... +....+....
T Consensus 199 l~~~i~--~~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~------- 266 (497)
T 3mc6_A 199 VKKFIN--KNTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF------- 266 (497)
T ss_dssp TGGGCC--SSEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST-------
T ss_pred HHHHHh--hCCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc-------
Confidence 344444 46899999999999999988 889999999999999999999865321 1110100111
Q ss_pred cCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccC------C----CC-----hHHHHHHHHHhCCchH
Q 044773 77 NTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG------L----VS-----SQTQYLLSALLSDKKF 141 (289)
Q Consensus 77 ~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~------~----~~-----~~~q~~~~~~l~~~~~ 141 (289)
...+.++++.|++|.++ +|.++||++++++.+..........+ . .+ ...+.++...+.
T Consensus 267 --~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~---- 339 (497)
T 3mc6_A 267 --RVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG---- 339 (497)
T ss_dssp --TSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH----
T ss_pred --cCCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh----
Confidence 12355788999999875 77889999998776544321111110 0 01 122333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKA--GISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH 218 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 218 (289)
...+++..++..++.+++.+.|.+. |+++.. +.++++. +.... .+..++...|. +.||.+.++..
T Consensus 340 -~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~-~~~~~-------~~~~~l~~~L~-~~Gi~v~~~~~-- 407 (497)
T 3mc6_A 340 -ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVIS-FSSKT-------LNIHELSDRLS-KKGWHFNALQK-- 407 (497)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEE-EECTT-------TTHHHHHHHHH-TTTCBCEECCS--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEE-EeCCC-------CCHHHHHHHHH-hCCEEEecCCC--
Confidence 3335777788888999999999994 888774 4555544 44332 12346777776 56998876543
Q ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 219 ~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+..+|+++..++++++++++++|++++++...
T Consensus 408 ---~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 408 ---PVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp ---SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred ---CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 23689999767899999999999999987654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-17 Score=147.14 Aligned_cols=205 Identities=21% Similarity=0.234 Sum_probs=130.9
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+... . . ..+
T Consensus 134 ~~~i~--~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~~---~-~------------~~~ 192 (412)
T 2cb1_A 134 REALS--AKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGAAGALCR---P-L------------AWG 192 (412)
T ss_dssp HHHCC--TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGTTTTSCC---G-G------------GGT
T ss_pred HHHhc--cCCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCccccccCC---c-c------------ccC
Confidence 44443 47899999999999999998 99999999999999999999986422111 1 1 125
Q ss_pred ceEEEecCccccCCCCceEEEEEecC-H--------------------------HHHHHHHhc--cccC-CCChHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSND-D--------------------------TVVAAATKM--SSFG-LVSSQTQYLL 132 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~-~--------------------------~~~~~~~~~--~~~~-~~~~~~q~~~ 132 (289)
.++++.|+||.++.+|.|+|++++.+ . .+.+.++.. ...+ ..++.....+
T Consensus 193 ~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~ 272 (412)
T 2cb1_A 193 AHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLL 272 (412)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred CeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHH
Confidence 67999999999988999999998755 2 222333322 1122 1233333333
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee-cC----------------CceEEEEEecCccccCCChh
Q 044773 133 SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCL-KS----------------NAGLFCWVDMRHLLSSNTFE 194 (289)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~----------------~~g~~~~i~~~~~~~~~~~~ 194 (289)
...++. +....+...++.+++.+.|.+. ++... .| ..+.++.+.+ . +.
T Consensus 273 ~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~--~~---- 338 (412)
T 2cb1_A 273 FQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G--DL---- 338 (412)
T ss_dssp HHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S--SH----
T ss_pred HcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C--CH----
Confidence 333322 2333444567778888888876 66633 22 1233555666 2 21
Q ss_pred hHHHHHHHHHHhcCeEEeCCC---------CCCC---------------CCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 195 AEMELWKKIVYDVKLNISPGS---------SCHC---------------TEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 195 ~~~~~~~~ll~~~gi~v~pg~---------~f~~---------------~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
+....++++.||.+ .++ .+.. ..++.+|+|++. +++++++.+.+.|++
T Consensus 339 ---~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 339 ---ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp ---HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 23445566789998 764 2211 015799999976 566777777776653
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=147.45 Aligned_cols=210 Identities=14% Similarity=0.138 Sum_probs=137.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+.. .+.+. .+..+ + ++.+.
T Consensus 125 ~~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~~---~~~~~------------~-~i~~~ 182 (388)
T 1b9h_A 125 PRTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGK---RVGEL------------D-SIATF 182 (388)
T ss_dssp TTEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---EGGGS------------S-SCEEE
T ss_pred cCceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCccCCe---ecccc------------c-ceEEE
Confidence 4677755 9999999987 899999999999999999999852 22221 11111 2 57788
Q ss_pred cCccccCCCCceEEEEEecCHHH--HHHHHhcccc--------------CCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTV--VAAATKMSSF--------------GLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~--~~~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
||||..+++|.|.||++++++.+ .+.+...... +....+.+..++.++.. .+++++..+.
T Consensus 183 S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~----~~~l~~~~~~ 258 (388)
T 1b9h_A 183 SFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ----LARLDEQIAV 258 (388)
T ss_dssp ECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH----HTTHHHHHHH
T ss_pred EccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH----HHHHHHHHHH
Confidence 98866655667899999977645 3433322111 11101122222222221 2235566777
Q ss_pred HHHHHHHHHHHHHhc-CCceec------CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----
Q 044773 153 LKQRHRKLVSGLEKA-GISCLK------SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT----- 220 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~~~~------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~----- 220 (289)
++++++++.+.|+++ |+++.. +.+++++|+.++... ..+..++...|. ++||.+.++......
T Consensus 259 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~ 333 (388)
T 1b9h_A 259 RDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLV-EAGLPAFAAFRAIYRTDAFW 333 (388)
T ss_dssp HHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHH
T ss_pred HHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccHHHHHHHHH-HCCCCcccccCccccChHhH
Confidence 888899999999987 777665 355788999987421 012345777776 569999876532100
Q ss_pred -----C-----------------CCeEEEEEec-C-CHHHHHHHHHHHHHHHHH
Q 044773 221 -----E-----------------PGWFRVCFAN-M-SEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 221 -----~-----------------~~~~Ris~~~-~-~~e~l~~~l~~l~~~l~~ 250 (289)
. .+.+||++.. + +++|++.+++.|++++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 334 ELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0 1359999954 7 899999999999988754
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=150.68 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=126.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+ .... ..+.++++.|
T Consensus 166 ~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~-----~~~~------------~~g~div~~S 225 (430)
T 3ri6_A 166 ETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL-----LEAK------------RLGVDIEVLS 225 (430)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT-----CCGG------------GGTCSEEEEE
T ss_pred CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-----CChH------------HcCCEEEEEC
Confidence 47999999999999999998 88999999999999999999985322 1111 1245689999
Q ss_pred CccccCCCCceEEEEEe--cCHHH------------------HHHHH-hc-cccCC-CChHHHHHHHHHhCCchHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYS--NDDTV------------------VAAAT-KM-SSFGL-VSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~--~~~~~------------------~~~~~-~~-~~~~~-~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
+||.+|.+|..+|.+++ .+... ..... .. ..++. .++.... .++.. .+.+
T Consensus 226 ~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~---l~l~~----l~~l 298 (430)
T 3ri6_A 226 STKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAY---LQSLG----LETM 298 (430)
T ss_dssp CCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH---HHHHH----HHHH
T ss_pred CcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHH---HHHhh----hhhH
Confidence 99999866655555554 22111 11111 11 12221 2322222 22221 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCc-eecCC----------------ceEEEEEecCccccCCChhhHHHHHHHHHHhcC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GIS-CLKSN----------------AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVK 208 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~g 208 (289)
..+.+...++.+.+.+.|+++ +++ +..|. ||+.+|+.++.. .+..++...+ +..+
T Consensus 299 ~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~------~~~~~~~~~l-~~~~ 371 (430)
T 3ri6_A 299 ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK------EASYRFMDAL-KLIR 371 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH------HHHHHHHHHC-SSSE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH------HHHHHHHHhC-Ccce
Confidence 555566778888899999877 454 33343 565888888732 2223444443 3445
Q ss_pred eEEeCCCCCCC---------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 209 LNISPGSSCHC---------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 209 i~v~pg~~f~~---------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+.+|..+.. ..++.||||++. |+.+++++.|++++
T Consensus 372 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~dl~~al 429 (430)
T 3ri6_A 372 RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKEDILQAL 429 (430)
T ss_dssp ECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred ecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHhh
Confidence 66677766652 235789999997 55566666666554
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-17 Score=149.01 Aligned_cols=216 Identities=14% Similarity=0.029 Sum_probs=140.7
Q ss_pred hHHHh-hh--CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQ-KR--HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~-~~--~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
+++++ .. .+++.+|++++||||||.+.+ +++|.++|+++|+++++|++|....++ ..... ...+.
T Consensus 219 l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g-~~~~~-~~~~~------- 286 (456)
T 2z67_A 219 IENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY-YLEKL-KKAFK------- 286 (456)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH-HHHHH-HHHHT-------
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH-hhHHH-HHhhC-------
Confidence 45555 32 236778889999999999988 999999999999999999999865331 10011 11111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCC-hHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVS-SQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
. +.++++.|++|.++ .+.++||++++++.+.+.+... ......+ .+.+.++...+. ...+++..+++.++
T Consensus 287 -~-~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~~~~~ 358 (456)
T 2z67_A 287 -Y-RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQKNS 358 (456)
T ss_dssp -S-CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred -C-CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 1 33467899999875 5688999999766555444322 1111111 222333332222 34467888889999
Q ss_pred HHHHHHHHHhc----CCceecCCceEEEEEec--CccccCCChhhHHHHHHHHHHhcCe---EEe------CCCCCCCCC
Q 044773 157 HRKLVSGLEKA----GISCLKSNAGLFCWVDM--RHLLSSNTFEAEMELWKKIVYDVKL---NIS------PGSSCHCTE 221 (289)
Q Consensus 157 ~~~l~~~l~~~----g~~~~~~~~g~~~~i~~--~~~~~~~~~~~~~~~~~~ll~~~gi---~v~------pg~~f~~~~ 221 (289)
++++.+.|.+. |+.+.+++ + ++++++ +.. ..++...|. +.|| .+. +|..|...+
T Consensus 359 ~~~l~~~L~~~~~~~g~~v~~~~-~-~v~~~~~~~~~--------~~~l~~~L~-~~gi~~~rv~~~~g~f~G~~~~~~~ 427 (456)
T 2z67_A 359 KKLLDELLNDLSKKTGGKFLDVE-S-PIASCISVNSD--------PVEIAAKLY-NLRVTGPRGIKKTDHFGNCYLGTYT 427 (456)
T ss_dssp HHHHHHHHHHHHHHSSCCBCCCC-C-SSEEEEECSSC--------HHHHHHHHH-HTTEESCEEECTTCHHHHTCSSCCS
T ss_pred HHHHHHHHHhcccccCCEecCCC-C-eEEEEEecccH--------HHHHHHHHH-HcCCCcceEEeecCccccccccccC
Confidence 99999999887 87777776 4 344555 221 134666666 4465 343 244444444
Q ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 222 ~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
.+++|++++. ++++++++++++|++++
T Consensus 428 ~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 428 HDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 6799999974 69999999999998754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=151.29 Aligned_cols=203 Identities=14% Similarity=0.151 Sum_probs=131.1
Q ss_pred CccEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVTNPSNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++|+++..+|++|. +.+++.+++|.++|+++|+++|+||+|.++++.|.. ..+..+ + . ...+.+.|
T Consensus 258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~~~~-g--------v-~~~~Di~t 326 (472)
T 1ohv_A 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKF-WAHEHW-G--------L-DDPADVMT 326 (472)
T ss_dssp CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-SGGGGG-C--------C-SSCCSEEE
T ss_pred CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCc-hhcccc-C--------C-CCCCCEEE
Confidence 5777666655888996 568999999999999999999999999976554431 122111 0 0 00123568
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|||.+ ++| ||++ +++ +.. .... ...+..|++.+.++.++++.. .+ ....++++++++++.+.|+++
T Consensus 327 ~sK~~-l~G---G~~~-~~~-~~~-~~~~~~~~T~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l 394 (472)
T 1ohv_A 327 FSKKM-MTG---GFFH-KEE-FRP-NAPYRIFNTWLGDPSKNLLLAEVINII---KR--EDLLSNAAHAGKVLLTGLLDL 394 (472)
T ss_dssp ECGGG-SSE---EEEE-CGG-GSC-SSSSSSCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred Ecccc-ccC---CccC-chh-hcc-cccccccCccCccHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHH
Confidence 99994 245 7776 433 321 1111 122236778888777777532 11 234566666777777777654
Q ss_pred --C----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 168 --G----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 168 --g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
+ +....+.+ .+++++++.. ....+++..|+ ++||.+.|+. .+++||+++. +++++++++
T Consensus 395 ~~~~~~~v~~~~~~g-~~~~~~~~~~------~~~~~~~~~l~-~~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~ 460 (472)
T 1ohv_A 395 QARYPQFISRVRGRG-TFCSFDTPDE------SIRNKLISIAR-NKGVMLGGCG------DKSIRFRPTLVFRDHHAHLF 460 (472)
T ss_dssp HHHCTTTCEEEEEET-TEEEEECSSH------HHHHHHHHHHH-HTTEECEEET------TTEEEECCCTTCCHHHHHHH
T ss_pred HhhCCCcEEeecCCc-eEEEEEeCCh------hHHHHHHHHHH-HCCeEEecCC------CCEEEEECCCCCCHHHHHHH
Confidence 1 22234444 4555676532 12346888887 5699999852 4689998864 799999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|.+++++
T Consensus 461 ~~~l~~~l~~ 470 (472)
T 1ohv_A 461 LNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=144.94 Aligned_cols=205 Identities=13% Similarity=0.193 Sum_probs=133.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|.... +++.. + . . -.++++.
T Consensus 150 ~~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~------~-~--------~-~~di~~~ 207 (399)
T 2oga_A 150 PRTRALL---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGRR------I-G--------A-GSSVAAF 207 (399)
T ss_dssp TTEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTEE------T-T--------C-TTCEEEE
T ss_pred CCCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCee------c-c--------c-ccCEEEE
Confidence 3577765 5789999988 8999999999999999999998542 22111 1 0 0 1247888
Q ss_pred cC--ccccCCCCceEEEEEecCHHHHHHHHhcccc--------------CCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 89 SL--SKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--------------GLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 89 s~--sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
|+ ||.+|.+| |.||++++++.+.+.+...... ...+++...++...++. +++..++
T Consensus 208 S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~ 279 (399)
T 2oga_A 208 SFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGR 279 (399)
T ss_dssp ECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHH
T ss_pred eCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHH
Confidence 88 79999668 9999999766665555432211 12355555555555543 2233445
Q ss_pred HHHHHHHHHHHHHhc-CCcee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-----------C
Q 044773 153 LKQRHRKLVSGLEKA-GISCL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-----------C 219 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----------~ 219 (289)
.+++.+++.+.|.++ |+++. .++++.++|+.++-... +..++...|. ++||.+.++.... .
T Consensus 280 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~ 353 (399)
T 2oga_A 280 RSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHLD-ARGIDTLTHYPVPVHLSPAYAGEAP 353 (399)
T ss_dssp HHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHHH-HTTBCCBCSCSSCGGGSHHHHTTSC
T ss_pred HHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHHH-HCCCceecCCCCccccchhhcccCC
Confidence 556677888888876 66654 34455555533321111 1245777765 6799998753210 0
Q ss_pred C----C------CCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 T----E------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~----~------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
. + .+.+||++.. +++++++.+++.|++++++
T Consensus 354 ~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 354 PEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp CTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0 2579999954 7999999999999988764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=151.75 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=125.6
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
.++++++|++++| |++|.+.+ +++|+++|+++|+++|+|++|+. +.|.+. ..+..++ +.+++
T Consensus 143 ~~~~~~~v~~~~~-n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~------------g~Di~ 205 (446)
T 2x3l_A 143 NNDGHKLVVLTYP-NYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY------------QADYV 205 (446)
T ss_dssp ----CCEEEEESS-CTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG------------TCSEE
T ss_pred cCCCceEEEEECC-CCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc------------CCCEE
Confidence 3467899999994 55999999 89999999999999999999986 223333 2333222 23488
Q ss_pred EecCccccCCCCceEEEEEecCHHHH-HHHHh-ccc--cCCCChHHHHHHHHHhCCchHHHHHH-HHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVV-AAATK-MSS--FGLVSSQTQYLLSALLSDKKFAQNYI-SENKKRLKQRHRKLV 161 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~-~~~~~-~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~ 161 (289)
+.|+||+++ ++.++||++++++.+. ..+.. ... .+..+.....++..++. ++.... ++..++.++..+++.
T Consensus 206 ~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~---~l~~~g~~~~~~~~~~l~~~l~ 281 (446)
T 2x3l_A 206 VQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQ---FYKTYDSTLFFAKRAQLIECLE 281 (446)
T ss_dssp EECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHH
T ss_pred EECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHH
Confidence 999999765 4445799999765432 12221 111 22233333333332222 112111 113344444444444
Q ss_pred HHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe-CCCCCCCCCCCeEEEEEec-CCHHHHHH
Q 044773 162 SGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS-PGSSCHCTEPGWFRVCFAN-MSEDTLKL 239 (289)
Q Consensus 162 ~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~~~Ris~~~-~~~e~l~~ 239 (289)
+. |+++..+.++.++|+.++. . +..++...|.++ ||.+. +| .+++|++++. ++++++ +
T Consensus 282 ~~----g~~~~~~~~~~~l~i~~~~-~------~~~~l~~~L~~~-GI~v~~~g-------~~~iRi~~~~~~t~e~i-~ 341 (446)
T 2x3l_A 282 NK----GFEMLQVDDPLKLLIKYEG-F------TGHDIQNWFMNA-HIYLELAD-------DYQALAILPLWHHDDTY-L 341 (446)
T ss_dssp HH----TCEEEECSSTTEEEEECTT-S------CHHHHHHHHHHT-TEEESEEC-------SSCEEEECCCCCTTCCC-C
T ss_pred Hc----CCEECcCCCCeEEEEEeCC-c------CHHHHHHHHHHC-CCEEEecC-------CCEEEEEeecCCCHHHH-H
Confidence 44 7887766555578888762 1 124577777655 99997 43 2579999964 588899 9
Q ss_pred HHHHHHHHHHHH
Q 044773 240 SMQRLKAFVDSI 251 (289)
Q Consensus 240 ~l~~l~~~l~~~ 251 (289)
++++|+++++..
T Consensus 342 l~~aL~~~~~~~ 353 (446)
T 2x3l_A 342 FDSLLRKIEDMI 353 (446)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987655
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-19 Score=163.50 Aligned_cols=219 Identities=16% Similarity=0.116 Sum_probs=139.1
Q ss_pred hHHHhhhC-CCccEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH-LKVKGVLVTNPSNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~-~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++++++ +++++|+++..+|++|.++ +.+.+++|.++|+++|+++|+||+|. + ..+... . .+
T Consensus 223 l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~-a-~~----------- 287 (465)
T 2yky_A 223 TADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGG-A-QE----------- 287 (465)
Confidence 45555542 3677766654466699654 68899999999999999999999999 6 333211 1 11
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
..+....+.||||++| +|+|+||++++++. .+.+.. ....+..|++.+.++.+.|+... + ....++
T Consensus 288 ~~gv~pDi~t~sK~lg-~G~piG~v~~~~~i-~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~---~--~~~~~~ 360 (465)
T 2yky_A 288 MLGISADLTTLGKYIG-GGMSFGAFGGRRDL-MERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY---T--RQAASD 360 (465)
Confidence 1233344679999999 69999999996554 443332 11233477788887777766432 1 123445
Q ss_pred HHHHHHHHHHHHHhc----CCceecCCceEEEEEecCc-cccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 153 LKQRHRKLVSGLEKA----GISCLKSNAGLFCWVDMRH-LLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~i~~~~-~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
++++.+++.+.|++. ++....+..|.++++.+.+ .... .......+++..|+ +.||.+.|+. |.
T Consensus 361 ~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~~--- 435 (465)
T 2yky_A 361 LSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRG-MY--- 435 (465)
Confidence 555555555555543 3333344556777787764 1100 00011245777777 6699999875 32
Q ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 222 ~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
. +++. +++++++++++++.+++++..
T Consensus 436 ---~-~s~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 436 ---A-LSLE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 1 6665 689999999999999887653
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=143.38 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=131.7
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. .+ . ..+
T Consensus 146 ~~~i~--~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~-~~----~------------~~g 203 (400)
T 3nmy_A 146 KAAIR--ADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ-RP----L------------SLG 203 (400)
T ss_dssp HHHCC--TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC-CG----G------------GGT
T ss_pred HHHhc--cCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC-Ch----h------------hcC
Confidence 44443 47899999999999999998 999999999999999999999743221 11 1 124
Q ss_pred ceEEEecCccccCCCCceEEE--EEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGA--IYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~--i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
.++++.|+||.++.+|.++|. +++.++.+.+.+...... ...++.....+...++. +..+.+...++.+
T Consensus 204 ~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-------l~~r~~~~~~~a~ 276 (400)
T 3nmy_A 204 ADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-------LPLRMRAHCENAL 276 (400)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHH
T ss_pred CcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-------HHHHHHHHHHHHH
Confidence 568999999999878777755 566666666655443322 22556665555555554 2344555677777
Q ss_pred HHHHHHHhc-CCc-eecC----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-
Q 044773 159 KLVSGLEKA-GIS-CLKS----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC- 219 (289)
Q Consensus 159 ~l~~~l~~~-g~~-~~~~----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~- 219 (289)
.+.+.|+++ .+. +..| ..|..+++++.... ....++...+ +-.++.+..|..++.
T Consensus 277 ~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~~~~~l-~~~~~~~s~G~~~sl~ 350 (400)
T 3nmy_A 277 ALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKRFCEKT-ELFTLAESLGGVESLV 350 (400)
T ss_dssp HHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHHHHHHC-SSSEECSCCCSSSCEE
T ss_pred HHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHHHHHcC-CcceEecCCCCCccee
Confidence 888888776 222 2222 13557778876421 1112333332 233334444433220
Q ss_pred --------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 044773 220 --------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 220 --------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~ 249 (289)
..++.+|+|++. |+.+++++.|.++++
T Consensus 351 ~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 351 NHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred eCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 135789999997 555566667777665
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-16 Score=143.21 Aligned_cols=224 Identities=13% Similarity=-0.000 Sum_probs=142.9
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc------CCEEEEecCCCCCcc---CCCCccChhhhhhcc
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK------NIHLISDEIYSGTVF---SSPGFVSIMEILKDR 73 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~---~~~~~~~~~~~~~~~ 73 (289)
++++. +++++|++++|+||||.+.+ +++|.++|+++ ++++++|++|.++.. .......+
T Consensus 181 ~~~i~--~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~------- 248 (452)
T 2dgk_A 181 IEACD--ENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF------- 248 (452)
T ss_dssp HHHCC--TTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-------
T ss_pred HHHHh--hCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-------
Confidence 44443 46899999999999999987 88999999995 999999999987532 11111111
Q ss_pred ccccCCCCCceEEEecCccccCCCCceEEEEEecCHH-HHHHHHhccccC-----------CC---ChHHHHHHHHHhCC
Q 044773 74 NCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT-VVAAATKMSSFG-----------LV---SSQTQYLLSALLSD 138 (289)
Q Consensus 74 ~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~-~~~~~~~~~~~~-----------~~---~~~~q~~~~~~l~~ 138 (289)
...+.+.++.|++|.+ +.|.++||++++++. +.+.+.....+. .. ..+.+.++...+.
T Consensus 249 -----~~~~~d~~~~~~hK~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg- 321 (452)
T 2dgk_A 249 -----RLPRVKSISASGHKFG-LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG- 321 (452)
T ss_dssp -----TSTTEEEEEEETTTTT-CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-
T ss_pred -----CCCCCcEEEECccccc-CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-
Confidence 0124456788999954 588999999997653 223221111111 01 1233333333332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 139 KKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
.+.+++..+++.++++++.+.|++. ++++..+ ..+ ++.+.++..... . .+..++...|. +.||.+.
T Consensus 322 ----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~-~v~f~~~~~~~~-~-~~~~~l~~~L~-~~Gi~v~ 393 (452)
T 2dgk_A 322 ----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIP-AVCFKLKDGEDP-G-YTLYDLSERLR-LRGWQVP 393 (452)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSS-EEEEEECTTCCC-S-CCHHHHHHHHH-HTTCBCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeE-EEEEEecCcccc-c-CCHHHHHHHHH-hcCCeee
Confidence 3446778888999999999999988 5777643 334 444555532100 0 11235777776 5698654
Q ss_pred CCCCCC-CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 213 PGSSCH-CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 213 pg~~f~-~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
...... ..+.+++|++++. +++++++.+++.|+++++....
T Consensus 394 ~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 394 AFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp EEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 321111 1235689999975 6899999999999999887665
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=140.04 Aligned_cols=207 Identities=10% Similarity=0.093 Sum_probs=132.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++ ||||.+.+ +++|.++|+++|+++|+|++|+.. .+.+.. + + . .++++.
T Consensus 126 ~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~------~-~--------~--~d~~~~ 182 (393)
T 1mdo_A 126 PQTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGRH------I-G--------A--RGTAIF 182 (393)
T ss_dssp TTEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE------T-T--------S--SSEEEE
T ss_pred CCceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCee------c-C--------C--CCeEEE
Confidence 368887776 47999877 899999999999999999999852 232211 1 0 1 558899
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHHhccccC--------------------------CCChHHHHHHHHHhCCch
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--------------------------LVSSQTQYLLSALLSDKK 140 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~--------------------------~~~~~~q~~~~~~l~~~~ 140 (289)
|+| |.++ |.+.||++++++.+.+.+......+ ..+.+...+....++
T Consensus 183 S~~k~K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~--- 257 (393)
T 1mdo_A 183 SFHAIKNIT--CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ--- 257 (393)
T ss_dssp ECCTTSSSC--SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH---
T ss_pred eCCCCCccc--cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH---
Confidence 999 6664 4589999997566655544321110 023333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceec-C-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 141 FAQNYISENKKRLKQRHRKLVSGLEKAGISCLK-S-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
.+++..+..+++.+++.+.|.+.++++.. + .+++++|+.++..... .+..++...|. ++||.+.+|
T Consensus 258 ----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~l~-~~gi~v~~~ 329 (393)
T 1mdo_A 258 ----KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG---ITRDALMASLK-TKGIGTGLH 329 (393)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS---SCHHHHHHHHH-HTTBCCBCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccc---cCHHHHHHHHH-hCCCCcccc
Confidence 13444555566778888899887766542 2 3456788888641000 11245777766 579999988
Q ss_pred CCCC--------------CC-----CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 215 SSCH--------------CT-----EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 215 ~~f~--------------~~-----~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..+. .+ ....+||++.. +++++++.++++|+++++...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 330 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred cCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 7541 01 13479999963 799999999999998876554
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=138.98 Aligned_cols=220 Identities=14% Similarity=0.127 Sum_probs=144.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCC-CccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSG-TVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++... ++|+|++++|+||+ .++ +++|.++|+++|+++++|++|.. +...+....++ .
T Consensus 195 le~~l~~~-~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~-~------------ 255 (490)
T 2a7v_A 195 LALTARLF-RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF-K------------ 255 (490)
T ss_dssp HHHHHHHH-CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG-G------------
T ss_pred HHHHHhhc-CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCC-C------------
Confidence 45555543 57898888888875 445 99999999999999999999862 22223222111 1
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCH--------------HHHHHHHhcc-cc--CCCChHHHHHHHHHhCCchHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDD--------------TVVAAATKMS-SF--GLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~--------------~~~~~~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
..++++.|+||+++ |.+.|+++++++ .+.+.++... .. +.++.....+++.++.... .
T Consensus 256 -~aDiv~~S~hK~l~--Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~--~ 330 (490)
T 2a7v_A 256 -HADIVTTTTHKTLR--GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC--T 330 (490)
T ss_dssp -TCSEEEEESSGGGC--SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH--S
T ss_pred -CCCEEEECCcccCc--cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh--h
Confidence 23488999999984 345599999764 2344444321 11 2233344444444444321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC---C
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH---C 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~ 219 (289)
...++..+++.++++++.+.|.+.|+++.. +....++|+++...... ..+ +...+++.||.+.++..++ +
T Consensus 331 ~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~-----~~~-~~~~L~~~GI~v~~~~~p~d~~p 404 (490)
T 2a7v_A 331 PMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD-----GAR-AERVLELVSITANKNTCPGDRSA 404 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCC-----HHH-HHHHHHHTTEECEEECCTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCC-----HHH-HHHHHHhCCeEEecCccCCCCCC
Confidence 334777888999999999999999998864 33457788888643111 123 4445568899998543333 2
Q ss_pred CCCCeEEEEEec-----CCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+||+... .++++++++.+.|.+++...
T Consensus 405 ~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 405 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 345789997732 47899999999999988754
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-16 Score=140.70 Aligned_cols=212 Identities=13% Similarity=0.164 Sum_probs=131.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++++ |||...+ +++|.++|+++|+++|+|++|+ ++.+++.. +..+ .+ +++.
T Consensus 137 ~~~~~v~~~~---~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~~---~~~~-----------~d--i~~~ 194 (424)
T 2po3_A 137 PRTSAVVGVH---LWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGRP---AGSL-----------GD--AEVF 194 (424)
T ss_dssp TTEEEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSS-----------SS--EEEE
T ss_pred cCCcEEEEEC---CCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECCee---cccc-----------cC--EEEE
Confidence 4688888764 7998766 9999999999999999999998 45444321 1111 12 8899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccccCC----------CC-hHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL----------VS-SQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~----------~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
||||..+++|.|.||++++++.+.+.+......+. .+ .+.+.+++.++.. .+.+++..++.+++.
T Consensus 195 S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~ 270 (424)
T 2po3_A 195 SFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNH 270 (424)
T ss_dssp ECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred eCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 99955555668999999975665555443221110 00 1122222232321 233556667777788
Q ss_pred HHHHHHHHhc-CCceec-CCce----EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----------
Q 044773 158 RKLVSGLEKA-GISCLK-SNAG----LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT----------- 220 (289)
Q Consensus 158 ~~l~~~l~~~-g~~~~~-~~~g----~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~----------- 220 (289)
+++.+.|.++ |+++.. ++++ +++++.++..... .+..++...| .++||.+.+ .|++.
T Consensus 271 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~L-~~~gI~v~~--~~~~~~~~~~~~~~~g 344 (424)
T 2po3_A 271 AAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTG---IHRDLVMEVL-KAEGVHTRA--YFSPGCHELEPYRGQP 344 (424)
T ss_dssp HHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHS---SCHHHHHHHH-HHTTEECBC--TTCSCGGGSTTTTTSC
T ss_pred HHHHHHhccCCCccccCCCCCCccccEEEEEEECCccch---hhHHHHHHHH-HHCCCceec--ccCCccccchhhhhcC
Confidence 8888888876 777665 4443 2333666531000 1123566655 577999987 22211
Q ss_pred ---CCCe-------EEEEE-ecCCHHHHHHHHHHHHHHHHHHHH
Q 044773 221 ---EPGW-------FRVCF-ANMSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 221 ---~~~~-------~Ris~-~~~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.+.. +|+++ ..++++++++++++|+++++....
T Consensus 345 ~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 345 HAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp CCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 0112 66764 337999999999999999876543
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=142.52 Aligned_cols=213 Identities=9% Similarity=0.124 Sum_probs=136.0
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+.+|++++|+||||..-+ +++|.++|+++|+++++|++|++..+... .. ..+. +....++++.|++
T Consensus 259 ~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~---~~~~-------gi~~~D~i~~s~h 324 (497)
T 2qma_A 259 PFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS-HK---SRLK-------GVERAHSISVDFH 324 (497)
T ss_dssp EEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST-TG---GGGT-------TGGGCSEEEEETT
T ss_pred ceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc-ch---Hhhc-------CcccCCEEEEcch
Confidence 348888999999999877 99999999999999999999987654322 11 1111 0113347788999
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhccccCC------C-------------ChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL------V-------------SSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~------~-------------~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
|.++.| .++|+++++++...+.+.....+.. . ..+.+.++...+. .+.+++..++
T Consensus 325 K~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg-----~~g~~~~~~~ 398 (497)
T 2qma_A 325 KLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG-----PKALGDMYDH 398 (497)
T ss_dssp TTTCCC-SSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC-----HHHHHHHHHH
T ss_pred hccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC-----HHHHHHHHHH
Confidence 999855 6999999976653322211111110 0 1122222233332 3346677788
Q ss_pred HHHHHHHHHHHHHhc-CCcee-cCCceEEEEEecCccccCCChhh-HHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 153 LKQRHRKLVSGLEKA-GISCL-KSNAGLFCWVDMRHLLSSNTFEA-EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~i~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
+.++++++.+.|++. ++++. ++..+ ++++++...... ... ..++...+. +.|+.+.++..+ .+.+++|+++
T Consensus 399 ~~~~a~~l~~~L~~~~~~~~~~~~~~~-~v~f~~~~~~~~--~~~l~~~l~~~l~-~~G~~~~~~~~~--~g~~~lRis~ 472 (497)
T 2qma_A 399 LLAQTLEVADMIRTNDQFELLAEPSLS-TVLFRATHETAD--LDELNKALRLEAL-TRGIAVLGETIV--DGKTALKFTI 472 (497)
T ss_dssp HHHHHHHHHHHHHTCTTEEECSCCSSS-EEEEEECCSSSC--HHHHHHHHHHHHH-HHTSCBCEEEEE--TTEEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCCeEEEcCCCce-EEEEEEcCCccC--HHHHHHHHHHHHH-hCCCEEEEeeEE--CCEEEEEEEe
Confidence 889999999999987 78774 45565 444555432111 010 123555565 558887654333 2346899998
Q ss_pred -e-cCCHHHHHHHHHHHHHHHHH
Q 044773 230 -A-NMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 230 -~-~~~~e~l~~~l~~l~~~l~~ 250 (289)
. .+++++++.++++|++++++
T Consensus 473 ~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 473 LNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 36999999999999988765
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=138.31 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=131.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+++ ||||...+ +++|.++|+++|+++|+|++|+.+. +++... .. . . .+.+.
T Consensus 129 ~~~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~-----------~-~-~~~~~ 186 (418)
T 2c81_A 129 DKTKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSHGSVWNNQRA---GT-----------I-G-DIGAF 186 (418)
T ss_dssp TTEEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEET---TS-----------S-S-SEEEE
T ss_pred CCCeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccccCccCCEec---cc-----------c-c-ceEEE
Confidence 468887765 57998766 9999999999999999999999764 332211 11 1 1 26667
Q ss_pred cC--ccccCCCCceEEEEEecCHHHHHHHHhccccC-------------CC------C--------hHHHHHHHHHhCCc
Q 044773 89 SL--SKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-------------LV------S--------SQTQYLLSALLSDK 139 (289)
Q Consensus 89 s~--sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~-------------~~------~--------~~~q~~~~~~l~~~ 139 (289)
|| ||.+|. | |.||++++++.+.+.+......+ .. + ...+.++... .
T Consensus 187 s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--~- 261 (418)
T 2c81_A 187 SCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLD--Q- 261 (418)
T ss_dssp ECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHH--H-
T ss_pred eccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHH--H-
Confidence 77 999985 8 99999997666555443221110 00 0 1112211111 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcee-cCCc-eEEEE----EecCccccCCChhhHHHHHHHHHHhcCeE--
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKA-GISCL-KSNA-GLFCW----VDMRHLLSSNTFEAEMELWKKIVYDVKLN-- 210 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~-g~~~~----i~~~~~~~~~~~~~~~~~~~~ll~~~gi~-- 210 (289)
.+.+++..++.+++.+++.+.|.++ |+++. ++++ +...| +.+++.... . .+..++...|.+++||.
T Consensus 262 ---l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~L~~~~gI~~~ 336 (418)
T 2c81_A 262 ---LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFG-G-LNADQFCEILREKLNMGTF 336 (418)
T ss_dssp ---HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTT-T-CCHHHHHHHHHHHHTCCTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccccc-c-cCHHHHHHHHHHcCCCCcc
Confidence 1124455566667788888999887 77776 4555 33222 566531000 0 12246778777555999
Q ss_pred -EeCCCCCCC---------------------------C-C------CCeEEEEEec-C-CHHHHHHHHHHHHHHHHHHH
Q 044773 211 -ISPGSSCHC---------------------------T-E------PGWFRVCFAN-M-SEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 211 -v~pg~~f~~---------------------------~-~------~~~~Ris~~~-~-~~e~l~~~l~~l~~~l~~~~ 252 (289)
+.++..... . + .+.+||++.. + +++|++.+++.|++++++..
T Consensus 337 ~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 337 YLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp TEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 887752210 0 0 1589999954 7 89999999999999887543
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=140.97 Aligned_cols=218 Identities=9% Similarity=0.127 Sum_probs=142.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||||.+.+ +++|.++|+++|+++++|++|.+..+....... .+. +....++++.++
T Consensus 245 ~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~---~~~-------g~~~~D~i~~~~ 311 (504)
T 2okj_A 245 VPFYVNATAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH---KLN-------GIERANSVTWNP 311 (504)
T ss_dssp EEEEEEECBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG---GGT-------TGGGCSEEEECT
T ss_pred CceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHh---hcC-------CcccCCEEEECc
Confidence 5889999999999999977 999999999999999999999876553322211 111 011334778899
Q ss_pred ccccCCCCceEEEEEecCHHH-HHHHHhccccCC----------------------CChHHHHHHHHHhCCchHHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDDTV-VAAATKMSSFGL----------------------VSSQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~-~~~~~~~~~~~~----------------------~~~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
+|.++.| .++|+++++++.+ .........+.. .+.+.+.++..++. .+.++
T Consensus 312 hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~ 385 (504)
T 2okj_A 312 HKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFE 385 (504)
T ss_dssp TSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHH
T ss_pred hhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHH
Confidence 9999845 6899999977543 332222221110 12455555544443 23467
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCceec---CCceEEEEEecCccccC--CC--h-----hhHHHHHHHHHHhcCe-EEeC
Q 044773 148 ENKKRLKQRHRKLVSGLEKA-GISCLK---SNAGLFCWVDMRHLLSS--NT--F-----EAEMELWKKIVYDVKL-NISP 213 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~~i~~~~~~~~--~~--~-----~~~~~~~~~ll~~~gi-~v~p 213 (289)
+..++..++++++.+.|++. |+++.. |..+++++...+..... .. . ....++...|.++ |+ .+.+
T Consensus 386 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~ 464 (504)
T 2okj_A 386 NQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGY 464 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEe
Confidence 77788889999999999887 788764 67777765544432100 00 0 0123466777655 75 4433
Q ss_pred CCCCCCCCCCeEEEEEe-c-CCHHHHHHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFA-N-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~-~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+. +. ...+++|++++ . +++++++.++++|++++++
T Consensus 465 ~~-~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 465 QP-QG-DKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EE-ET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred eE-EC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 21 11258999996 3 6899999999999887654
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=138.10 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=90.3
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++++ +++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|..... .. ++ ++
T Consensus 160 le~ai~--~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~~---p~-~~---------- 219 (415)
T 2fq6_A 160 IVKHLQ--PNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-FK---AL-DF---------- 219 (415)
T ss_dssp GGGGCC--TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-SC---GG-GG----------
T ss_pred HHHhhc--cCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-CC---cc-cc----------
Confidence 344444 46899999999999999998 8999999999 9999999999985311 11 11 12
Q ss_pred CCCceEEEecCccccCCCCce-EEEEEecCHHHHHHHHhccc-cCC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFR-VGAIYSNDDTVVAAATKMSS-FGL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r-~G~i~~~~~~~~~~~~~~~~-~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+.++++.|+||.+|.+|.+ .||++++++. .+.+..... ++. .++.....+...+ +.+..+.+...++
T Consensus 220 --g~Div~~S~sK~lg~~g~~~~G~l~~~~~~-~~~l~~~~~~~G~~~~~~~a~~~~~~l-------~~l~~r~~~~~~n 289 (415)
T 2fq6_A 220 --GIDVSIQAATKYLVGHSDAMIGTAVCNARC-WEQLRENAYLMGQMVDADTAYITSRGL-------RTLGVRLRQHHES 289 (415)
T ss_dssp --TCSEEEEETTTTTTCSSSCCCEEEEECTTT-HHHHHHHHHHTTCCCCHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred --CCeEEEEeCccccCCCCCceEEEEEeCHHH-HHHHHHHHHhcCCCCCHHHHHHHHhhh-------hHHHHHHHHHHHH
Confidence 4568999999999877754 5999997654 333332222 222 2333232222222 2234445556677
Q ss_pred HHHHHHHHHhc
Q 044773 157 HRKLVSGLEKA 167 (289)
Q Consensus 157 ~~~l~~~l~~~ 167 (289)
.+.+.+.|++.
T Consensus 290 ~~~l~~~L~~~ 300 (415)
T 2fq6_A 290 SLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHcC
Confidence 77788888765
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=139.61 Aligned_cols=212 Identities=14% Similarity=0.170 Sum_probs=138.3
Q ss_pred cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCcc
Q 044773 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSK 92 (289)
Q Consensus 13 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK 92 (289)
.+|++++|+||||.+-+ +++|+++|+++|+++++|++|++..+..+.......- ..+.+.++.+++|
T Consensus 237 ~~vv~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g----------~~~adsi~~~~hK 303 (486)
T 1js3_A 237 FFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNG----------VEFADSFNFNPHK 303 (486)
T ss_dssp EEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTT----------GGGCSEEEECHHH
T ss_pred eEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcC----------ccccCeeEEchhh
Confidence 48899999999998866 9999999999999999999998754432222221110 1122356788999
Q ss_pred ccCCCCceEEEEEecCHHH-HHHHHhcccc---------------------C-CCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 93 DLGLPGFRVGAIYSNDDTV-VAAATKMSSF---------------------G-LVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 93 ~~g~~G~r~G~i~~~~~~~-~~~~~~~~~~---------------------~-~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
.++.| .++|+++++++.. .+.+.....+ + ....+.+.++...+. .+.+++.
T Consensus 304 ~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~ 377 (486)
T 1js3_A 304 WLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAY 377 (486)
T ss_dssp HSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHH
T ss_pred hcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHH
Confidence 99855 8899999987653 3222100000 0 012344444444332 3446777
Q ss_pred HHHHHHHHHHHHHHHHhc-CCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE-EeCCCCCCCCCCCeEE
Q 044773 150 KKRLKQRHRKLVSGLEKA-GISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN-ISPGSSCHCTEPGWFR 226 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~~R 226 (289)
.++..++++++.+.|.+. |+++.. |..+++.+ .+... + ....++...|.++ |+. +.++. + .+.+++|
T Consensus 378 ~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~-~----~~~~~l~~~L~~~-g~~~~~~~~-~--~~~~~lR 447 (486)
T 1js3_A 378 IRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGS-D----GLNEALLERINSA-RKIHLVPCR-L--RGQFVLR 447 (486)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSC-H----HHHHHHHHHHHHH-TSCBCEEEE-E--TTEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecCh-H----HHHHHHHHHHHhc-CCEEEEEEE-E--CCEEEEE
Confidence 888888999999999987 788764 66666554 44321 0 0114577777755 654 33332 2 2357899
Q ss_pred EEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 227 VCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 227 is~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+++.. +++++++.++++|++++++...
T Consensus 448 i~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 448 FAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99843 5889999999999999887653
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=139.44 Aligned_cols=221 Identities=11% Similarity=-0.010 Sum_probs=142.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc------CCEEEEecCCCCCcc---CCCCccChhhhhhccccccCCC
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK------NIHLISDEIYSGTVF---SSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~---~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++++|++++|+||||.+.+ +++|.++|+++ ++++++|++|.++.. .+.....+ ..
T Consensus 201 ~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~------------~~ 265 (502)
T 3hbx_A 201 ENTICVAAILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF------------RL 265 (502)
T ss_dssp TTEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST------------TS
T ss_pred hCCEEEEEecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccccc------------CC
Confidence 46889999999999999988 88899999998 999999999986531 11111111 12
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHH-HHHHhccccC-----------CCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVV-AAATKMSSFG-----------LVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~-~~~~~~~~~~-----------~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
.+.+++..|.+|.++ .+.++||++++++... ..+.....+. ..+.....++..++.... .+.+.+
T Consensus 266 ~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg--~~g~~~ 342 (502)
T 3hbx_A 266 PLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--HEGYRN 342 (502)
T ss_dssp TTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH--HHHHHH
Confidence 245677889999885 6677899988665432 2221111111 011112222222222111 233567
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeE
Q 044773 149 NKKRLKQRHRKLVSGLEKAG-ISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWF 225 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g-~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~ 225 (289)
..++..++.+++.+.|.+++ +++..+ ....++.++++.... .+..++...|. +.||.+....... ..+..++
T Consensus 343 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~----~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~l 417 (502)
T 3hbx_A 343 VMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC----HTEFEISDMLR-RYGWIVPAYTMPPNAQHITVL 417 (502)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSS----CCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCc----CCHHHHHHHHH-hCCcEEeeccCCcccCCceEE
Confidence 77888888899999999984 887765 333455566654211 12235777765 6799875332221 1234689
Q ss_pred EEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
||++.. ++.++++.+++.|+++++...+
T Consensus 418 Risv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 418 RVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999964 7899999999999999987654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=138.06 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=129.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecC-CCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEI-YSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
++++++|++++| ||||.+.+ +++|.++|+++|+++++|-. ++ ++... ...++ +.++++
T Consensus 194 ~~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a---~g~~~--~~~~~------------g~D~~~ 252 (438)
T 1wyu_A 194 GEEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS---LGVLK--PPGAY------------GADIAV 252 (438)
T ss_dssp CTTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG---GGTBC--CHHHH------------TCSEEE
T ss_pred CCCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh---ccCcC--CCccC------------CCCEEE
Confidence 357899999999 99999997 99999999999999997632 32 11111 11122 334666
Q ss_pred ecCccccC----CCCceEEEEEecCHHHHHHHH----------------------------hccccCCC---ChHHHHHH
Q 044773 88 YSLSKDLG----LPGFRVGAIYSNDDTVVAAAT----------------------------KMSSFGLV---SSQTQYLL 132 (289)
Q Consensus 88 ~s~sK~~g----~~G~r~G~i~~~~~~~~~~~~----------------------------~~~~~~~~---~~~~q~~~ 132 (289)
+| +|.|| +.|.++||++++++.+ +.+. ........ +.+....+
T Consensus 253 ~s-~kk~~~~~~~~Gp~~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~a 330 (438)
T 1wyu_A 253 GD-GQSLGLPMGFGGPHFGFLATKKAFV-RQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMG 330 (438)
T ss_dssp EE-CTTTTCCCGGGCSCCEEEEECGGGG-GGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHH
T ss_pred EC-CcccCCCccCCCCCeeEEEEcHHHH-HhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHH
Confidence 66 66543 3456899999965433 2221 00111111 11222111
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEE
Q 044773 133 SALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNI 211 (289)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 211 (289)
+.++.... ...+++..++++++++++.+.|++. |+++..+.. ++.++.+.... +..++...|. ++||.+
T Consensus 331 a~~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~~------~~~~~~~~L~-~~gi~v 400 (438)
T 1wyu_A 331 AMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALALPK------DPEAVRRALA-ERGFHG 400 (438)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEECSS------CHHHHHHHHH-HTTCCC
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-eEEEEEEeCCC------CHHHHHHHHH-HCCcee
Confidence 21132211 3346778888999999999999998 888876543 33222222111 2246888877 559998
Q ss_pred --eCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 212 --SPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 212 --~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
.++..|+ ++++||++.. ++++++++++++|++++
T Consensus 401 ~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 401 ATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 7777664 5799999964 68999999999998764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=129.79 Aligned_cols=204 Identities=8% Similarity=0.041 Sum_probs=130.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++| ||.+.+ +++|.++|+++|+++|+|++|+....... . .+. ... ++.+.|
T Consensus 120 ~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~~--~----~~~--------~~~-~i~~~s 178 (375)
T 2fnu_A 120 ERTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQN--K----KVG--------GFA-LASVFS 178 (375)
T ss_dssp TTEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT--E----ETT--------SSS-SEEEEE
T ss_pred cCceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeECC--e----ecc--------ccC-CeEEEe
Confidence 46888888876 999988 89999999999999999999985322111 0 111 112 377788
Q ss_pred Cc--cccCCCCceEEEEEe-cCHHHHHHHHhcccc---------------C---CCChHHHHHHHHHhCCchHHHHHHHH
Q 044773 90 LS--KDLGLPGFRVGAIYS-NDDTVVAAATKMSSF---------------G---LVSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 90 ~s--K~~g~~G~r~G~i~~-~~~~~~~~~~~~~~~---------------~---~~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
+| |.+| +| +|++++ +++.+.+.+...... . ..+++...+....+ +.+++
T Consensus 179 ~s~~K~~~-~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~ 248 (375)
T 2fnu_A 179 FHAIKPIT-TA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL-------KKAPF 248 (375)
T ss_dssp CCTTSSSC-CS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH-------TTHHH
T ss_pred CCCCCCcc-cc--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH-------HHHHH
Confidence 88 9997 46 688887 446565544433211 1 12222222211111 22456
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCceecC----C-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--
Q 044773 149 NKKRLKQRHRKLVSGLEKA-GISCLKS----N-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT-- 220 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~-g~~~~~~----~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-- 220 (289)
..++.+++++++.+.|+++ |+++..+ . .+++.++.++.... .+..++...|. ++||.+..+ |.+.
T Consensus 249 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~-~~gi~v~~~--~~p~~~ 321 (375)
T 2fnu_A 249 LMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TCKKLILESLH-KRGILAQVH--YKPIYQ 321 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GGHHHHHHHHH-HTTEECBCC--CCCGGG
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcccc----chHHHHHHHHH-HCCCCcccc--cccccc
Confidence 6777888899999999987 7776554 1 23445666653200 02345777775 679998832 2110
Q ss_pred -------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 221 -------------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 221 -------------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+++||+++. +++++++.++++|++++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 322 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 02579999964 68999999999999988754
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=133.91 Aligned_cols=205 Identities=11% Similarity=0.119 Sum_probs=125.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-CCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-SSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+.... .+.... ...++++.
T Consensus 124 ~~~~~v~---~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~----------------~~~d~~~~ 181 (374)
T 3uwc_A 124 DKTKAIM---PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDKFVG----------------SWGQFACF 181 (374)
T ss_dssp TTEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEETT----------------SSSSEEEE
T ss_pred CCceEEE---EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCeecc----------------ccccEEEE
Confidence 3577765 8999999988 89999999999999999999985322 111110 01246677
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHHhcccc-----------C---CCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSF-----------G---LVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-----------~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
|+| |.++.+|. .|+++++++.+.+.+...... . ..+.+...+....+. . +++..++
T Consensus 182 s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~--~-----~~~~~~~ 253 (374)
T 3uwc_A 182 SLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN--Q-----LETITEK 253 (374)
T ss_dssp ECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG--G-----HHHHHHH
T ss_pred eCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH--H-----HHHHHHH
Confidence 766 99984365 799999877776655543211 0 012222222211111 1 3445566
Q ss_pred HHHHHHHHHHHHHhcC--Cceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC----------
Q 044773 153 LKQRHRKLVSGLEKAG--ISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC---------- 219 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g--~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------- 219 (289)
.+++.+++.+.|.+.+ +++.. +.++...|..+.-... +..++...|. ++||.+.++.....
T Consensus 254 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~~~~~~ 327 (374)
T 3uwc_A 254 RRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK-----YRDQLFQYLK-DNGIEVKIHYPIAMHLQPAAKSLG 327 (374)
T ss_dssp HHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET-----THHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGC
T ss_pred HHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC-----CHHHHHHHHH-HCCCccccCCCCccccChhhhhcC
Confidence 6677778888888774 54432 2322222211111111 1245666665 66999998752110
Q ss_pred -C----------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 220 -T----------EPGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 -~----------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
. ..+.+||++.. ++++|++.+++.|++++++
T Consensus 328 ~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 328 YQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp CCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 01679999954 7999999999999998865
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=135.87 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=66.8
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++++. +++++|++++|+||+|.+++ +++|.++|+++|+++|+|++|..+.+.+.. ..+ +
T Consensus 138 ~~~i~--~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~----~~~------------~ 196 (421)
T 2ctz_A 138 LALTD--EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP----LAW------------G 196 (421)
T ss_dssp HHHCC--TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG----GGG------------T
T ss_pred HHhhc--cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc----ccc------------C
Confidence 44443 47899999999999999999 999999999999999999999323232221 112 3
Q ss_pred ceEEEecCccccCCCCceEEEEEec
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSN 107 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~ 107 (289)
.++++.|+||.++.+|.++|++++.
T Consensus 197 ~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 197 AALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CeEEEECCcccccCCCCcEEEEEEe
Confidence 4588999999999889999998885
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=135.27 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=125.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+........ .... ..+ +.+.|
T Consensus 143 ~~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~~~~-----------~~d--i~~~S 201 (391)
T 3dr4_A 143 PRTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK--KSGS-----------LGD--CATFS 201 (391)
T ss_dssp TTEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTS-----------SSS--EEEEE
T ss_pred CCceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe--eecc-----------cCC--EEEEE
Confidence 4677766 5689999887 899999999999999999999843221111 0000 112 55666
Q ss_pred Cc--cccCCCCceEEEEEecCHHHHHHHHhccccC----------------CCChHHHHHHHHHhCCchHHHHHHHHHHH
Q 044773 90 LS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFG----------------LVSSQTQYLLSALLSDKKFAQNYISENKK 151 (289)
Q Consensus 90 ~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~----------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 151 (289)
|| |.++ |.+.|+++++++.+.+.+......+ ..+.+... ..+.. ...+++..+
T Consensus 202 ~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa--~~~~~-----~~~~~~~~~ 272 (391)
T 3dr4_A 202 FFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAA--IGLAQ-----LERVDEHLA 272 (391)
T ss_dssp CBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHH--HHHHH-----HHTHHHHHH
T ss_pred CCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHH--HHHHH-----HHHHHHHHH
Confidence 55 8775 3568999998777766554332111 11222221 12111 122345556
Q ss_pred HHHHHHHHHHHHHHhcCCceecC------Cce-EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC---CCC-
Q 044773 152 RLKQRHRKLVSGLEKAGISCLKS------NAG-LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC---HCT- 220 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g~~~~~~------~~g-~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f---~~~- 220 (289)
+.+++.+++.+.|.+.|+++..+ ..+ +.+++.++... . .+..++...|. ++||.+.++... .+.
T Consensus 273 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---~~~~~l~~~L~-~~GI~v~~~~~p~~~~~~~ 347 (391)
T 3dr4_A 273 ARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGL-S---TTRDQVIKDLD-ALGIESRPVFHPMHIMPPY 347 (391)
T ss_dssp HHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSC-S---SCHHHHHHHHH-HTTCCCEECCCCGGGSGGG
T ss_pred HHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCcc-c---hhHHHHHHHHH-HCCCceeecCCccccChhh
Confidence 66777778888888777776554 122 23456665411 1 12245777766 569999987521 000
Q ss_pred --------------CCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 221 --------------EPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 221 --------------~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
....+||++.. ++++|++.++++|++++
T Consensus 348 ~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 348 AHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp GGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 13579999954 79999999999998753
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-14 Score=133.08 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=135.7
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
++++|++++|+||||.+.+ +++|.++|+++|+++++|++|++..+..+.... .+. +..+.++++.|+
T Consensus 259 ~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~---~~~-------g~~~aD~v~~s~ 325 (515)
T 2jis_A 259 VPFLVSATSGTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH---LLD-------GIQRADSVAWNP 325 (515)
T ss_dssp EEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG---GGT-------TGGGCSEEEECT
T ss_pred CcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHh---hcC-------CCccCCEEEECc
Confidence 5889999999999999988 999999999999999999999876554332211 111 011345888999
Q ss_pred ccccCCCCceEEEEEecCH--HHHHHHHhccccC------------------C----CChHHHHHHHHHhCCchHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDD--TVVAAATKMSSFG------------------L----VSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~--~~~~~~~~~~~~~------------------~----~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
+|.++ .+.++|+++++++ .+.........+. . ...+.+.++..++. ...+
T Consensus 326 hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~ 399 (515)
T 2jis_A 326 HKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGL 399 (515)
T ss_dssp TSTTC-CCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHH
T ss_pred ccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHH
Confidence 99997 3467999999876 3333211010000 0 11333444433442 2336
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceec-CCceEEEEEecCcccc----CCChhhH-----HHHHHHHHHhcCeEEeCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKA-GISCLK-SNAGLFCWVDMRHLLS----SNTFEAE-----MELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~i~~~~~~~----~~~~~~~-----~~~~~~ll~~~gi~v~pg~ 215 (289)
++..++..++++++.+.|++. |+++.. +..+.+.+...+.... ...+... ..+...+. +.|+.+....
T Consensus 400 ~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~-~~G~~~~~~~ 478 (515)
T 2jis_A 400 ERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMV-KEGSMMIGYQ 478 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHH-HHTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHH-hcCCEEEEEE
Confidence 677788889999999999987 787765 4445555433333211 1111111 12455555 4476542110
Q ss_pred CCCCCCCCeEEEEEe-c-CCHHHHHHHHHHHHHHHH
Q 044773 216 SCHCTEPGWFRVCFA-N-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 216 ~f~~~~~~~~Ris~~-~-~~~e~l~~~l~~l~~~l~ 249 (289)
.. ....+++|++++ . +++++++.++++|+++++
T Consensus 479 ~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 479 PH-GTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp EE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 011358999994 3 699999999999988764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=134.25 Aligned_cols=219 Identities=10% Similarity=0.142 Sum_probs=137.6
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+++|++++|+||+|.+-+ +++|+++|+++|+++++|++|++..+..+.... .+. +...-+.++.+++
T Consensus 249 ~~~vv~~~~~~~~G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~---~~~-------g~~~aDsv~~~~h 315 (511)
T 3vp6_A 249 PFYVNATAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH---KLN-------GIERANSVTWNPH 315 (511)
T ss_dssp EEEEEEEBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG---GGT-------TGGGCSEEEECTT
T ss_pred cEEEEEecCCCCCccccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhh---hcc-------CCccCCEEEECcc
Confidence 789999999999999966 999999999999999999999875443322111 111 0113357788999
Q ss_pred cccCCCCceEEEEEecCHHHHHHH-HhccccCC----------------------CChHHHHHHHHHhCCchHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAA-TKMSSFGL----------------------VSSQTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~-~~~~~~~~----------------------~~~~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
|.++.| ..+|+++++++.+.... .....+.. ...+...++..++. .+.+++
T Consensus 316 K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~ 389 (511)
T 3vp6_A 316 KMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFEN 389 (511)
T ss_dssp STTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHH
T ss_pred cccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHH
Confidence 999845 67899998776544332 21111110 11222333333331 455788
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCceec---CCceEEEEEecCccccCC--Chh-------hHHHHHHHHHHhcCeEEeCCC
Q 044773 149 NKKRLKQRHRKLVSGLEKA-GISCLK---SNAGLFCWVDMRHLLSSN--TFE-------AEMELWKKIVYDVKLNISPGS 215 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~~i~~~~~~~~~--~~~-------~~~~~~~~ll~~~gi~v~pg~ 215 (289)
+.++..++.+++.+.|++. |+++.. |..+++.|.-.+...... ... ...++...|.++ |+.+.. .
T Consensus 390 ~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~ 467 (511)
T 3vp6_A 390 QINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-Y 467 (511)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-E
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-E
Confidence 8889999999999999987 888765 566665543333322110 000 012466777755 654432 1
Q ss_pred CCCCCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHH
Q 044773 216 SCHCTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 216 ~f~~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~ 251 (289)
.+...+.+++|+++++ ++.++++.+++.|+++-+..
T Consensus 468 ~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 468 QPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1111223579999942 68999999999887765543
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=134.58 Aligned_cols=214 Identities=13% Similarity=0.115 Sum_probs=139.6
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+.+|+++.++|+||.+-+ +++|+++|+++|+++++|.+|....+....... .+. +....+.+..+++
T Consensus 235 ~~~v~~~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~---~~~-------gi~~~Ds~~~~~h 301 (475)
T 3k40_A 235 PFYAVVTLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRH---LMK-------GIESADSFNFNPH 301 (475)
T ss_dssp EEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGG---GGT-------TGGGCSEEEECHH
T ss_pred cEEEEEEecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHH---Hhc-------CcccCCEEEECch
Confidence 677899999999999877 999999999999999999999864332222111 111 0112357789999
Q ss_pred cccCCCCceEEEEEecCHHH-HHHHHhccccC----------------CCC----hHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTV-VAAATKMSSFG----------------LVS----SQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~-~~~~~~~~~~~----------------~~~----~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
|.++.| ..+|++++++... .+.+.....+. ..+ .+.+.++...+. .+.+++..
T Consensus 302 K~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~ 375 (475)
T 3k40_A 302 KWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHI 375 (475)
T ss_dssp HHSSCC-SSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHH
T ss_pred hccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHH
Confidence 998733 5678888876543 22221111110 011 122222222222 33467778
Q ss_pred HHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
++..++.+++.+.|++. |+++..+....++++++.... ....++...|.++.++.+.|+..++ ..++|+++
T Consensus 376 ~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~g---~~~lR~~~ 447 (475)
T 3k40_A 376 RRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSN-----ERNEALLKRINGRGHIHLVPAKIKD---VYFLRMAI 447 (475)
T ss_dssp HHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEETT---EEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCch-----HHHHHHHHHHHhCCcEEEEeeEECC---EEEEEEEe
Confidence 88999999999999988 888876554445566664311 1235688888877666666654433 57899998
Q ss_pred ec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 230 AN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 230 ~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+ +++++++.++++|+++.++..
T Consensus 448 ~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 448 CSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 64 489999999999999987654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=130.19 Aligned_cols=222 Identities=17% Similarity=0.139 Sum_probs=128.9
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.++.+--+.++..| ....|. ..+++.+++|.++|++||+++|+||++.+ ..|..+. .+..
T Consensus 210 l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a--~e~~--------- 276 (454)
T 4ao9_A 210 ARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGL--ANKL--------- 276 (454)
T ss_dssp HHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCH--HHHH---------
T ss_pred HHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccc--hhcc---------
Confidence 4566666533333455567 544564 45688999999999999999999999984 4444322 2221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh------ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK------MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRL 153 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 153 (289)
+....+.+++|.+| .|+++|.++++ +.+.+.+.. ..+.+..|++...+..+.|+...- ++ ..+++
T Consensus 277 --gv~PDi~t~gK~lg-gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~----~~~~~ 347 (454)
T 4ao9_A 277 --GIRSDLTTLGKYIG-GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PE----AAGAL 347 (454)
T ss_dssp --TCCCSEEEEEGGGG-TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HH----HHHHH
T ss_pred --CCCCcEEEeccccC-CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cC----hhHHH
Confidence 12223567899998 88999999995 455544421 112233678777776666542211 12 22333
Q ss_pred HHHHHHHHHHHH----hcCCceecCCceEEEEEecCccc-c------CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 154 KQRHRKLVSGLE----KAGISCLKSNAGLFCWVDMRHLL-S------SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 154 ~~~~~~l~~~l~----~~g~~~~~~~~g~~~~i~~~~~~-~------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
+++.++|.+.|+ +.++......-|..+.+.+.+.. . .....-...+...|+ +.||.+.|.
T Consensus 348 ~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~-------- 418 (454)
T 4ao9_A 348 AERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPR-------- 418 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTT--------
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCC--------
Confidence 333344444443 33432221111233334443210 0 001111234566666 569998763
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 223 GWFRVCFANMSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 223 ~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
+++.+++. ++++|+|++++++.+++.+....+
T Consensus 419 ~~~~~s~~-~T~~dId~~l~al~~~l~~~~a~l 450 (454)
T 4ao9_A 419 GFVVLSLP-LTDADIDRYVAAIGSFIGGHGALL 450 (454)
T ss_dssp CEEECCTT-CCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred CCEEEeCC-CCHHHHHHHHHHHHHHHHhccccC
Confidence 34455555 699999999999999999876543
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=124.22 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=127.9
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCC-CCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYS-GTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++...+ ++++|++++ |||...+ +++|.++|+++|+++|+|++|+ +..+.+....+
T Consensus 112 l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~-------------- 171 (394)
T 1o69_A 112 LKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNKALGT-------------- 171 (394)
T ss_dssp HHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--------------
T ss_pred HHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccceeCCccccc--------------
Confidence 345555432 589988885 7997666 9999999999999999999998 44443221111
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCC----------------CChHHHHHHHHHhCCchHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL----------------VSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~----------------~~~~~q~~~~~~l~~~~~~~ 143 (289)
..+.++...|.+|.+ +|.++||++++++.+.+.+......+. .+++...+....++
T Consensus 172 ~~~~~~~s~s~~K~l--~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~------ 243 (394)
T 1o69_A 172 FGEFGVYSYNGNKII--TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME------ 243 (394)
T ss_dssp SSSEEEEECCTTSSS--CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT------
T ss_pred ccCcEEEEEeCCccC--CCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH------
Confidence 113334444446766 456899999976666555544322210 11122211111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceE-EEEEecCccc---------------cCCChhhHHHHHHHH
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGL-FCWVDMRHLL---------------SSNTFEAEMELWKKI 203 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~-~~~i~~~~~~---------------~~~~~~~~~~~~~~l 203 (289)
++++..++++++++++.+.|.+. +++.++. +++ .+++.++... ....-.+..++...|
T Consensus 244 -~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 321 (394)
T 1o69_A 244 -VLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDL 321 (394)
T ss_dssp -THHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHH
Confidence 24456677888888899999876 5554432 233 3556665311 000001334577776
Q ss_pred HHhcCeEEeCCCCCC---CCCC---------------CeEEEEE-ecCCHHHHHHHHHHHHHHHHH
Q 044773 204 VYDVKLNISPGSSCH---CTEP---------------GWFRVCF-ANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 204 l~~~gi~v~pg~~f~---~~~~---------------~~~Ris~-~~~~~e~l~~~l~~l~~~l~~ 250 (289)
. ++||.+.++..+. +.-. ..+|+.+ ..++++|++.+++.|+++++.
T Consensus 322 ~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 322 K-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp H-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred H-HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5 6799999985431 1000 2344444 337999999999999887654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=131.08 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=141.5
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+.+|+++.++|+||.+-+ +++|+++|+++|+++++|.+|.+..+..........- ....+.+..+++
T Consensus 242 ~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~g----------i~~aDsi~~~~h 308 (481)
T 4e1o_A 242 PVFVCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKG----------IEYADSFTFNPS 308 (481)
T ss_dssp EEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTT----------GGGCSEEEECHH
T ss_pred cEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcC----------cccCCEEEEChH
Confidence 677899999999998866 9999999999999999999998654332222111111 112246778999
Q ss_pred cccCCCCceEEEEEecCHHHHH-HHHhccccC-----------------C---CChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVA-AATKMSSFG-----------------L---VSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~-~~~~~~~~~-----------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
|.++.| ..+|+++++++.... .+.....+. . ...+.+.++...+. .+.+++..
T Consensus 309 K~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~ 382 (481)
T 4e1o_A 309 KWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHV 382 (481)
T ss_dssp HHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHH
Confidence 999855 557888887765432 111111110 0 11233343333332 34467778
Q ss_pred HHHHHHHHHHHHHHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 151 KRLKQRHRKLVSGLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
++..++++++.+.|++. |+++..+....++++++.... ....++...+.++..+.+.|+... +..++|+++
T Consensus 383 ~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~ 454 (481)
T 4e1o_A 383 RHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATIQ---DKLIIRFTV 454 (481)
T ss_dssp HHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEET---TEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEEC---CEEEEEEEe
Confidence 88999999999999987 888876555456667765311 122467888876644555554432 346899998
Q ss_pred ec--CCHHHHHHHHHHHHHHHHHHH
Q 044773 230 AN--MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 230 ~~--~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.. +++++++.++++|+++.++..
T Consensus 455 ~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 455 TSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 54 478999999999999887653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=127.66 Aligned_cols=205 Identities=14% Similarity=0.199 Sum_probs=120.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+ |+||||...+ +++|.++|+++|+++|+|++|+... +++.. + ....++.+.
T Consensus 123 ~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~------~----------~~~~d~~~~ 180 (373)
T 3frk_A 123 EKTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYKGMK------V----------GSLGDAAGF 180 (373)
T ss_dssp TTEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTEE------T----------TSSSSEEEE
T ss_pred CCCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEECCEe------c----------cccccEEEE
Confidence 3677766 6789999888 8899999999999999999998432 21111 1 001236778
Q ss_pred cCc--cccCCCCceEEEEEecCHHHHHHHHhccccC--------------CCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 89 SLS--KDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--------------LVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 89 s~s--K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~--------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
||+ |.+|..|. .|+++++++.+.+.+......+ ..+.+...+....++ .+++..++
T Consensus 181 S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~-------~~~~~~~~ 252 (373)
T 3frk_A 181 SFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLK-------YLDKWNEE 252 (373)
T ss_dssp ECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHH-------THHHHHHH
T ss_pred eCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHH-------HHHHHHHH
Confidence 876 99973253 6999998776665554332211 012222222222121 23445566
Q ss_pred HHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--C---------
Q 044773 153 LKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--T--------- 220 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~--------- 220 (289)
.+++.+++.+.|.+.++.+.. +.++...|..+.-... +..++...|. +.||.+.++..... .
T Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~ 326 (373)
T 3frk_A 253 RRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----KRDELQKYLN-NNGIGTLIHYPIPIHLQQAYKDLGFK 326 (373)
T ss_dssp HHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----SHHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCC
T ss_pred HHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----CHHHHHHHHH-HCCCCcccCcCCccccChHHHhcCCC
Confidence 667777788888776533321 1222221111111111 1245666665 66999987652111 0
Q ss_pred ----C------CCeEEEEEec-CCHHHHHHHHHHHHHHHHH
Q 044773 221 ----E------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 221 ----~------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+ .+.+|+++.. ++++|++.+++.|+++..+
T Consensus 327 ~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 327 TGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp TTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred CCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 0 1579999954 8999999999999876544
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-14 Score=134.62 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=128.5
Q ss_pred cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCc-cChhhhhhccccccCCCCCceEEEecC
Q 044773 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGF-VSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 13 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~-~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
|++++++| ||+|.+.+ +++|+++|+++++++++|++|... .+.+... .+.... .+. +. ...+++++.|+
T Consensus 283 klviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~-~~~---g~-D~~~~iv~~S~ 353 (730)
T 1c4k_A 283 RLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLI-DDL---GP-EDPGIIVVQSV 353 (730)
T ss_dssp SEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSC-CCC---CT-TSCEEEEEECH
T ss_pred eEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccc-ccc---CC-CCCCEEEEECC
Confidence 89999999 58999988 999999999999999999999753 2321110 011110 000 00 12467999999
Q ss_pred ccccCCCCce-EEEEEecCHHH--------HHHHHhc---cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFR-VGAIYSNDDTV--------VAAATKM---SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 91 sK~~g~~G~r-~G~i~~~~~~~--------~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
||+++ |++ .|+++++++.+ ...+... .....++.....++..++.... .....+..+.+.++.+
T Consensus 354 hK~L~--g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~--~~~g~~~~~~~~~~a~ 429 (730)
T 1c4k_A 354 HKQQA--GFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE--GEAGRKLWHDLLITTI 429 (730)
T ss_dssp HHHSS--CCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHH
T ss_pred CCCCC--CCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHH
Confidence 99985 332 36675654432 1122211 1112234343333333333111 1123445566777778
Q ss_pred HHHHHHHh-c-CCceecCCc-------------------------------------e-EE-----EEEecCcc------
Q 044773 159 KLVSGLEK-A-GISCLKSNA-------------------------------------G-LF-----CWVDMRHL------ 187 (289)
Q Consensus 159 ~l~~~l~~-~-g~~~~~~~~-------------------------------------g-~~-----~~i~~~~~------ 187 (289)
++++.|.+ . |+++..+.. + ++ +.+.++..
T Consensus 430 ~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~ 509 (730)
T 1c4k_A 430 EARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGD 509 (730)
T ss_dssp HHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTE
T ss_pred HHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCccccccc
Confidence 88888887 3 777654421 1 11 34444320
Q ss_pred ccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 188 LSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..... .+...+...|. ++||.+.+. +...+|+++.. +++++++.+++.|+++.+.+.
T Consensus 510 ~~~~g-~~~~~l~~~L~-e~GI~v~~~------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 510 YEDFG-VPATIVANYLR-DHGIIPEKS------DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp ECSSC-CCHHHHHHHHH-HTTCCCSEE------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC-CCHHHHHHHHH-HCCcEEEEC------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 00001 12345666665 559988653 24678999954 799999999999999987764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=121.66 Aligned_cols=198 Identities=15% Similarity=0.143 Sum_probs=123.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCC-ccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGT-VFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|+ |+||+|...+ +++|.++|+++|+++|+|++|+.. .+.+.... ..+ ++++.
T Consensus 122 ~~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~---------------~~~-di~~~ 179 (367)
T 3nyt_A 122 PRTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASYKGKRSC---------------NLS-TVACT 179 (367)
T ss_dssp TTEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEETTEETT---------------SSS-SEEEE
T ss_pred cCCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeECCeecc---------------CCC-CEEEE
Confidence 4677766 7889998877 999999999999999999999842 22221111 111 47788
Q ss_pred cC--ccccCCCCceEEEEEecCHHHHHHHHhcccc--------------CCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 89 SL--SKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--------------GLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 89 s~--sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
|| +|.+|.+|. .|+++++++.+.+.+...... ...+++...+....++. +++..++
T Consensus 180 Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------~~~~~~~ 251 (367)
T 3nyt_A 180 SFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEI-------FEEEIAL 251 (367)
T ss_dssp ECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHH
T ss_pred ECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHH-------HHHHHHH
Confidence 87 899985476 899999877776665543221 22444444444444432 2334445
Q ss_pred HHHHHHHHHHHHHhcCCceecC-Cce---E-EEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------
Q 044773 153 LKQRHRKLVSGLEKAGISCLKS-NAG---L-FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------- 219 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g~~~~~~-~~g---~-~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------- 219 (289)
.+++.+++.+.|.+.++.+... .++ + ...+.++ +..++...|. ++||.+.++.....
T Consensus 252 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~~GI~~~~~~~~~~~~~~~~~~ 321 (367)
T 3nyt_A 252 RQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------NRESVQASLK-AAGVPTAVHYPIPLNKQPAVAD 321 (367)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---------SHHHHHHHHH-HHTCCCBCSCSSCGGGSGGGCC
T ss_pred HHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---------CHHHHHHHHH-HCCCceeccCCCccccChhhhc
Confidence 5666677888888776544322 221 1 1223333 1234666665 66999887643110
Q ss_pred C-C---------CCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 220 T-E---------PGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 220 ~-~---------~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
. . ...+|+++.. ++++|++.+++.+++.
T Consensus 322 ~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 322 EKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp TTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred cCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 0 0 2468999954 7999999999988764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=124.68 Aligned_cols=220 Identities=16% Similarity=0.122 Sum_probs=132.7
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|.+ .+++.+++|.++|++||+++|+||++.+++.+|..+.. +. ++...-+.
T Consensus 226 ~iAA-vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~--e~-----------~gv~PDiv 291 (456)
T 4atq_A 226 QVAA-IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAV--DH-----------EGVVPDII 291 (456)
T ss_dssp GEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG--GG-----------TTCCCSEE
T ss_pred ceEE-EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccc--cc-----------cCCCCchh
Confidence 3445 55556 5545654 56789999999999999999999999998777764321 11 12223366
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchH--HHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKF--AQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+++|.+| .|+++|.+++++ .+.+.+... .+.+..|++...++.+.|+...- +.+..++.-+++.+..+.+.+.+
T Consensus 292 t~gK~lg-gg~P~~av~~~~-~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~ 369 (456)
T 4atq_A 292 TMAKGIA-GGLPLSAITGRA-DLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAEL 369 (456)
T ss_dssp EECGGGG-TTSSCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccc-CcCCceeeEecH-HHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899998 899999999954 444433222 22344788888887777663221 12223333333333322222222
Q ss_pred HhcCCceec--CCceEEEEEecCccccC-CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 165 EKAGISCLK--SNAGLFCWVDMRHLLSS-NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 165 ~~~g~~~~~--~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
...+..+.. ..-|+++.+++..+... ....-..++...++ ++|+.+.++... ...+||.+.. .++++++++
T Consensus 370 ~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~-~~Gvl~~~~g~~----~~~irl~PpL~it~~~id~~ 444 (456)
T 4atq_A 370 SAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACL-KEGVIILTCGTY----GNVIRLLPPLVISDELLIDG 444 (456)
T ss_dssp C-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH-HTTEECEEECTT----SCEEEECCCTTCCHHHHHHH
T ss_pred ccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHH-HCCCEEEecCCC----CCEEEEECCCCCCHHHHHHH
Confidence 111111111 11245666776543221 12222345666666 669998875433 3479999864 699999999
Q ss_pred HHHHHHHHHHH
Q 044773 241 MQRLKAFVDSI 251 (289)
Q Consensus 241 l~~l~~~l~~~ 251 (289)
+++|.++++..
T Consensus 445 l~~l~~al~a~ 455 (456)
T 4atq_A 445 LEVLAAAIKAH 455 (456)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998753
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=128.84 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=110.8
Q ss_pred hHHHhhhCCCccEEEEeC----CCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhcccc
Q 044773 2 YQLAQKRHLKVKGVLVTN----PSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~----p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 75 (289)
+++++++++++|+|++++ |+||||.+ .++++|+++|++ +|+++++|++|..+.+...+ .
T Consensus 167 l~~~l~~~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p----~-------- 231 (427)
T 3i16_A 167 IEKVLKEDESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEP----T-------- 231 (427)
T ss_dssp HHHHHHTCTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCG----G--------
T ss_pred HHHHhhCCCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccCCc----c--------
Confidence 455555435799999999 99999866 569999999999 99999999999865332211 1
Q ss_pred ccCCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-c--ccCC-CCh-HHHHHHHHHhCCchHHHHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-S--SFGL-VSS-QTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-~--~~~~-~~~-~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
..+.+++++|+||.+|.+| .+.||++++ +.+.+.+... . ..+. .++ .. ++..++.. ...+..+
T Consensus 232 ----~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~l~g----l~~~~~r 300 (427)
T 3i16_A 232 ----DVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFG--VVRSMYQG----LFLAPHI 300 (427)
T ss_dssp ----GGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHH----HHHHHHH
T ss_pred ----ccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHH--HHHHHHHH----HHHHHHH
Confidence 1144589999999998555 566999995 4555544431 1 1111 111 21 11122221 2224566
Q ss_pred HHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecCccccCCChhhHHHHHHHHHHh
Q 044773 150 KKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLSSNTFEAEMELWKKIVYD 206 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g----~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ 206 (289)
.+...+++.++.+.|+++|+++.+..+. ..+.+.+... ....++++.|...
T Consensus 301 ~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~------~~~~~f~~~l~~~ 355 (427)
T 3i16_A 301 SMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDK------DKLIEFCKGIQTG 355 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCH------HHHHHHHHHHhhc
Confidence 7788888899999999999888654332 1444666532 2334577766533
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-14 Score=134.97 Aligned_cols=225 Identities=9% Similarity=-0.033 Sum_probs=126.6
Q ss_pred hHHHhhhCCCcc--------EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCC--CccChhhhh
Q 044773 2 YQLAQKRHLKVK--------GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSP--GFVSIMEIL 70 (289)
Q Consensus 2 l~~~~~~~~~~~--------~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~--~~~~~~~~~ 70 (289)
++++++.+++++ +++++|| ||+|.+.+ +++|+++|+++++++++|++|.... +... +...+ ..
T Consensus 295 le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~--~g 368 (755)
T 2vyc_A 295 LQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAM--RG 368 (755)
T ss_dssp HHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSS--CS
T ss_pred HHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchh--cC
Confidence 456665544444 8999999 79999988 9999999999999999999997542 2211 11111 11
Q ss_pred hccccccCC-CCCceEEEecCccccCCCCce-EEEEEecCH--HH-HHHHH-hc--cccCCCChHHHHHHHHHhC---Cc
Q 044773 71 KDRNCENTE-VWNRVHIVYSLSKDLGLPGFR-VGAIYSNDD--TV-VAAAT-KM--SSFGLVSSQTQYLLSALLS---DK 139 (289)
Q Consensus 71 ~~~~~~~~d-~~~~~i~i~s~sK~~g~~G~r-~G~i~~~~~--~~-~~~~~-~~--~~~~~~~~~~q~~~~~~l~---~~ 139 (289)
. ..| ..++++++.|+||+++ |++ .|+++++++ .+ ...+. .. .....++.+...++..+++ ..
T Consensus 369 ~-----~aD~~~~~~iv~~S~hK~L~--g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~ 441 (755)
T 2vyc_A 369 E-----PGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGN 441 (755)
T ss_dssp C-----CCCCSSBEEEEEEETTTSSS--CCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTH
T ss_pred C-----cCCccCCCeEEEECcccccc--CcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 0 002 2457789999999975 333 577777554 11 11111 11 1122244444444333333 21
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------CceecCC----------------------------------
Q 044773 140 KFAQNYISENKKRLKQRHRKLVSGLEKA-G---------ISCLKSN---------------------------------- 175 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g---------~~~~~~~---------------------------------- 175 (289)
. .++..+.+.++.+++++.|.++ | +++..+.
T Consensus 442 g-----g~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (755)
T 2vyc_A 442 S-----GLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGE 516 (755)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTC
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCccc
Confidence 1 2233344444445555555443 3 3333221
Q ss_pred ---------ce------EEEEEecCccccC-----CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCH
Q 044773 176 ---------AG------LFCWVDMRHLLSS-----NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSE 234 (289)
Q Consensus 176 ---------~g------~~~~i~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~ 234 (289)
.| ..+.+.++..... .. .+...+...| +++||.+... +.+.+|+.++. +++
T Consensus 517 ~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g-~~~~~l~~~L-~~~gI~~e~~------~~~~v~~~~~~g~t~ 588 (755)
T 2vyc_A 517 SWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETG-VPAALVTAWL-GRHGIVPTRT------TDFQIMFLFSMGVTR 588 (755)
T ss_dssp TTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSC-CCHHHHHHHH-HTTTCCCSEE------CSSEEEEECCTTCCT
T ss_pred ccccccccCCCccccCCeEEEEEcCCCCCCCCccccC-CcHHHHHHHH-HHCCCEEeec------CCCeEEEEECCCCCH
Confidence 11 1233444421000 01 1123455555 5689887542 35689999954 699
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 235 e~l~~~l~~l~~~l~~~~ 252 (289)
++++.++++|.++.+.+.
T Consensus 589 ~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 589 GKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999977653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=141.58 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=131.1
Q ss_pred CccEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTTM-SRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+|++... ++..|..+ +.+.+++|.++|++||+++|+||++.+++.+|..+ . .+..+ . ...+.
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a-~e~~g--------v---~PDii 660 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-T-TELLG--------C---KPDIA 660 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSS-T-HHHHS--------S---CCSEE
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCch-h-hHhcC--------C---CCcEE
Confidence 4555444432 67777765 88899999999999999999999999987777654 2 22221 1 11145
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHhc--------cccCCCChHHHHHHHHHhCC---chHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATKM--------SSFGLVSSQTQYLLSALLSD---KKFAQNYISENKKRLKQR 156 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~ 156 (289)
++||.++ +| +++|+++++ +.+.+.+... ...+..|++.+.++.+.|+. ..+ .+.+.+..+.+++.
T Consensus 661 tlsK~L~-gG~~Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l-~~~~~~~~~~l~~~ 737 (831)
T 4a0g_A 661 CFAKLLT-GGMVPLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET-NHNITSQGKTLREL 737 (831)
T ss_dssp EECGGGG-TTSSCCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT-CTTBCTTSSBBCCC
T ss_pred EEecccc-cCccCcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHH
Confidence 8999998 67 899999995 5555544321 12233678887776666652 221 11111111222110
Q ss_pred -HHHHHHHHHhcC-CceecCCceEEEEEecCccccCC--ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe-c
Q 044773 157 -HRKLVSGLEKAG-ISCLKSNAGLFCWVDMRHLLSSN--TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA-N 231 (289)
Q Consensus 157 -~~~l~~~l~~~g-~~~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~-~ 231 (289)
.+.+.+.+.++. +....+. |.++.+++....... ......++...++ +.||.+.|+ ...+||++. .
T Consensus 738 l~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~-------g~~lrl~pp~~ 808 (831)
T 4a0g_A 738 WDEELVQQISSHSAVQRVVVI-GTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL-------GNVIYLMCGPC 808 (831)
T ss_dssp SCHHHHHHHHHSTTEEEEEEE-TTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-------TTEEEEECCTT
T ss_pred HHHHHHHHHhhCCCceeEeec-ccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-------CCEEEEECCCC
Confidence 123445555553 2223333 455556664321110 0122345677766 679999875 258999974 3
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~ 251 (289)
++++++++++++|.+++++.
T Consensus 809 ~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 809 TSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp CCHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999887643
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-13 Score=122.55 Aligned_cols=213 Identities=12% Similarity=0.135 Sum_probs=132.4
Q ss_pred ccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 12 VKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 12 ~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.-+.++..| +.-.|.+ .+++.+++|.++|++||+++|.||++.+++.+|..+.. +. .+....+.+
T Consensus 236 ~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~--e~-----------~gv~PDi~t 302 (473)
T 4e3q_A 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGC--VT-----------YDFTPDAII 302 (473)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHH--HH-----------TTCCCSEEE
T ss_pred ceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHH--Hh-----------cCCCCChHH
Confidence 334466667 5555654 56779999999999999999999999998777665321 11 122233567
Q ss_pred CccccCCCC-ceEEEEEecCHHHHHHHHh----c-----cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPG-FRVGAIYSNDDTVVAAATK----M-----SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 90 ~sK~~g~~G-~r~G~i~~~~~~~~~~~~~----~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
++|.++ .| +++|.+++++ .+.+.+.. . ...+..|++...++.+.|+...- +...++.++..++
T Consensus 303 ~~K~l~-gG~~Pl~av~~~~-~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~-----~~l~~~~~~~g~~ 375 (473)
T 4e3q_A 303 SSKNLT-AGFFPMGAVILGP-ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN-----EGLAENVRRLAPR 375 (473)
T ss_dssp ECGGGG-TTSSCCEEEEECH-HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH-----SSHHHHHHHHHHH
T ss_pred hccccc-CCCCCcccccccH-HHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc-----ccHHHHHHHHHHH
Confidence 899998 66 9999999954 44443321 1 12334788887777776653221 1223334444455
Q ss_pred HHHHHHhc----CCceecCCceEEEEEecCccccC-C----ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 160 LVSGLEKA----GISCLKSNAGLFCWVDMRHLLSS-N----TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 160 l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~-~----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
|.+.|+++ .+.-.... |+++.+++...... . ...-...+...++ +.||.+.|.. ..+||+++
T Consensus 376 l~~~L~~l~~~~~v~~vRG~-Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g-------~~i~l~PP 446 (473)
T 4e3q_A 376 FEERLKHIAERPNIGEYRGI-GFMWALEAVKDKASKTPFDGNLSVSERIANTCT-DLGLICRPLG-------QSVVLCPP 446 (473)
T ss_dssp HHHHHHHHTTSTTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEEET-------TEEEECCC
T ss_pred HHHHHHHHhcCCCeeEEeec-ceEEEEEEecCccccccccccHHHHHHHHHHHH-HCCcEEEecC-------CEEEEeCC
Confidence 55555543 22111122 34555665332111 0 1111234666666 6799988742 47899885
Q ss_pred c-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
. .++++++++++++.+++++...
T Consensus 447 L~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 447 FILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 7999999999999999988654
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=125.85 Aligned_cols=170 Identities=17% Similarity=0.056 Sum_probs=108.4
Q ss_pred hHHHhhhCCCccEEEEeC----CCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhcccc
Q 044773 2 YQLAQKRHLKVKGVLVTN----PSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNC 75 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~----p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 75 (289)
+++++++++++|+|++++ |+||||.+ .++++|+++|++ +|+++++|++|..+.+...+ .
T Consensus 167 l~~~i~~~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p----~-------- 231 (427)
T 3hvy_A 167 VKEELKKDDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP----T-------- 231 (427)
T ss_dssp HHHHHHHCTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG----G--------
T ss_pred HHHHhhCCCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCCC----c--------
Confidence 455565445899999999 99999766 569999999999 89999999999865332211 1
Q ss_pred ccCCCCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc---cccCC--CChHH-HHHHHHHhCCchHHHHHHHH
Q 044773 76 ENTEVWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM---SSFGL--VSSQT-QYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 76 ~~~d~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~---~~~~~--~~~~~-q~~~~~~l~~~~~~~~~~~~ 148 (289)
..+.+++++|+||.+|.+| .+.||++++ +.+.+.+... ...+. .+++. ...+...+ .....
T Consensus 232 ----~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~ 299 (427)
T 3hvy_A 232 ----DVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPH 299 (427)
T ss_dssp ----GGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHH
T ss_pred ----ccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHH
Confidence 1244589999999998544 455999995 5555544432 11211 11122 12222211 22345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceecCCce----EEEEEecCccccCCChhhHHHHHHHHH
Q 044773 149 NKKRLKQRHRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLSSNTFEAEMELWKKIV 204 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~g----~~~~i~~~~~~~~~~~~~~~~~~~~ll 204 (289)
+.+...++.+++.+.|+++|+++.+..+. ..+.+.+... ....+++..+.
T Consensus 300 r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~~------~~~~~f~~~l~ 353 (427)
T 3hvy_A 300 VTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFNDE------KKLIDFIKGIQ 353 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSSH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCCH------HHHHHHHHHhc
Confidence 66678888999999999999888654332 1455666532 22345666664
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=124.91 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=109.5
Q ss_pred HHHhhhCCCccEEEEe-CCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 3 QLAQKRHLKVKGVLVT-NPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~-~p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
++++. +++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|..+.++..+ ..+
T Consensus 159 ~~~l~--~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~----~~~---------- 222 (431)
T 3ht4_A 159 AAAIH--SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP----CHV---------- 222 (431)
T ss_dssp HHHCC--TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG----GGT----------
T ss_pred HhhcC--CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc----ccc----------
Confidence 44443 479999999 489999999999999999999999 99999999999976543221 111
Q ss_pred CCCceEEEecCccccCC-CCceEEEEEecCHHHHHHHHh-ccc--cCC--CChHH-HHHHHHHhCCchHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGL-PGFRVGAIYSNDDTVVAAATK-MSS--FGL--VSSQT-QYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~-~G~r~G~i~~~~~~~~~~~~~-~~~--~~~--~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
+.+++++|+||.+|. .+...||++++ +.+.+.+.. ... .+. .+++. ...+...+ ..+..+.+.
T Consensus 223 --g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l-------~~~~~~~~~ 292 (431)
T 3ht4_A 223 --GADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF-------FLAPHVAGQ 292 (431)
T ss_dssp --TCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH-------HHHHHHHHH
T ss_pred --CCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHh-------hhHHHHHHH
Confidence 345899999999752 11333999996 444444433 211 111 11111 12222211 223455667
Q ss_pred HHHHHHHHHHHHHhcCCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHh
Q 044773 153 LKQRHRKLVSGLEKAGISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYD 206 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ 206 (289)
..++.+++.+.|+++|+++.+..+ +....+.+.+. ....+++..+...
T Consensus 293 ~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 293 ALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 788889999999998887754332 22444566532 2334577776544
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=123.65 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=105.5
Q ss_pred CCccEEEEeC----CCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCc
Q 044773 10 LKVKGVLVTN----PSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNR 83 (289)
Q Consensus 10 ~~~~~i~l~~----p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 83 (289)
+++++|++++ |+||||.+. ++++|+++|++ +|+++++|++|..+.+...+ . ..+.
T Consensus 158 ~~tklV~i~~s~g~p~nptg~v~---~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p----~------------~~g~ 218 (409)
T 3jzl_A 158 PKTKMIGIQRSRGYADRPSFTIE---KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP----P------------EVGA 218 (409)
T ss_dssp TTEEEEEEECSCTTSSSCCCCHH---HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS----G------------GGTC
T ss_pred CCCeEEEEECCCCCCCCCcCccc---cHHHHHHHHHhhCCCCEEEEeCCcccccccCCc----c------------ccCC
Confidence 4799999999 999998764 59999999999 99999999999865332111 1 1245
Q ss_pred eEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc-cc--c--CCCChHH-HHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 84 VHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM-SS--F--GLVSSQT-QYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 84 ~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~-~~--~--~~~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+++++|+||.+|.+| ...||++++ +.+.+.+... .. . ...+.+. ..++...+ .....+.+...++
T Consensus 219 Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~ 290 (409)
T 3jzl_A 219 DIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKG 290 (409)
T ss_dssp SEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred eEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHH
Confidence 689999999998554 345999996 5555544432 11 1 1122221 22222222 2234566678888
Q ss_pred HHHHHHHHHhcCCceecCCce----EEEEEecCccccCCChhhHHHHHHHHHHh
Q 044773 157 HRKLVSGLEKAGISCLKSNAG----LFCWVDMRHLLSSNTFEAEMELWKKIVYD 206 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g----~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ 206 (289)
.+++.+.|+++|+++.+..+. ..+.+.+.+. ....+++..|...
T Consensus 291 a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~------~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 291 ARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNK------EKMVAFAQAIQAA 338 (409)
T ss_dssp HHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 999999999999887554332 1444555532 2335677776543
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=125.59 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=122.9
Q ss_pred hHHHhhhCCCcc---EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-cCCCCccChhhhhhcccccc
Q 044773 2 YQLAQKRHLKVK---GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-FSSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 2 l~~~~~~~~~~~---~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (289)
+++++++++++| ++++++| ||+|.+++ +++|.++|++++ +++||+|.... ++ +..+....+..
T Consensus 285 Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~-~~~~~~~al~~------ 351 (715)
T 3n75_A 285 IAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFS-PIYEGKCGMSG------ 351 (715)
T ss_dssp HHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGS-GGGTTSSTTSS------
T ss_pred HHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccccC-Ccccccccccc------
Confidence 567777665555 8999999 99999998 778888887653 79999998653 32 21111111100
Q ss_pred CCCCCce-EEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCC---CChHHHHHHHHHhCCchHHH-HHHHHHHHH
Q 044773 78 TEVWNRV-HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL---VSSQTQYLLSALLSDKKFAQ-NYISENKKR 152 (289)
Q Consensus 78 ~d~~~~~-i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~---~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~ 152 (289)
.+..+.+ ++++|+||+++.. ...|++.++++.....++....... ++.+...++..++. ++. ....+.+++
T Consensus 352 g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~---~~~~~~g~~~~~~ 427 (715)
T 3n75_A 352 GRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAA---MMKGNAGKRLING 427 (715)
T ss_dssp SCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHH---HHSHHHHHHHHHH
T ss_pred CcCCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHH---HHHhhccHHHHHH
Confidence 0012443 5699999998632 1248998866532333333322222 33344333333332 222 134455666
Q ss_pred HHHHHHHHHHHHHhc-----C--CceecCC------------------------ceE-----EEEEecCccccC-----C
Q 044773 153 LKQRHRKLVSGLEKA-----G--ISCLKSN------------------------AGL-----FCWVDMRHLLSS-----N 191 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~-----g--~~~~~~~------------------------~g~-----~~~i~~~~~~~~-----~ 191 (289)
+.++.+++++.|.++ | +++..++ +.+ -+.+.++..... .
T Consensus 428 l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~ 507 (715)
T 3n75_A 428 SIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDF 507 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSS
T ss_pred HHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccC
Confidence 677777777777654 1 2332221 111 133333321100 0
Q ss_pred ChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 192 TFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 192 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
. .....+.+.| +++||.+.-+..+ ++-+-++- .+.++++.++++|.++.+.+
T Consensus 508 G-i~g~~~~~~L-~~~~I~~E~~d~~------~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 508 G-IPASIVAKYL-DEHGIVVEKTGPY------NLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp C-CCHHHHHHHH-HHTTCCCSEEETT------EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHH-HHCCCEEEecCCC------cEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 1223445544 6789987654432 33333321 58899999999998876644
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=111.10 Aligned_cols=204 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|.+++..|.||.+.+. +|+++++++++|.+++. +..+.++.++ + +++.
T Consensus 150 ~~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~~----g~~~id~~~~------------~--~~~~ 203 (377)
T 3e77_A 150 NPDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSNF----LSKPVDVSKF------------G--VIFA 203 (377)
T ss_dssp CTTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTTT----TSSCCCGGGC------------S--EEEE
T ss_pred CCCccEEEEeCccCchheEchh--------hhccCCCEEEEEccccc----CCCCCchhhc------------C--EEEE
Confidence 4689999999888899999984 36788999999999983 3433444333 3 4678
Q ss_pred cCccccCCCCceEEEEEecCHHH-------------HHHHHhccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTV-------------VAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKRL 153 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~-------------~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~~ 153 (289)
|..|.+|.+| +|+++++++.+ ....+....+++++.....++..+++.. .+. ++...++.
T Consensus 204 s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l---~~~GG~~~i~~~~ 278 (377)
T 3e77_A 204 GAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWI---KNNGGAAAMEKLS 278 (377)
T ss_dssp EGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHH---HHTTHHHHHHHHH
T ss_pred ecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHH---HHccCHHHHHHHH
Confidence 9999999778 67777754432 1111122233445556666666665532 333 67788889
Q ss_pred HHHHHHHHHHHHhc-CCceecC----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 154 KQRHRKLVSGLEKA-GISCLKS----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 154 ~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
++..+++++.|++. |+.+.+. .++..+.+.++....... .+ ..+...+. ++||.+.+|... .+.+|+|
T Consensus 279 ~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~-~~-~~~l~~l~-~~Gi~~~~g~~~----~g~iRiS 351 (377)
T 3e77_A 279 SIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDA-LE-KRFLDKAL-ELNMLSLKGHRS----VGGIRAS 351 (377)
T ss_dssp HHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHH-HH-HHHHHHHH-HTTEESCBCCTT----TCSEEEE
T ss_pred HHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchh-HH-HHHHHHHH-HCCcEEeCCCCc----CCEEEEE
Confidence 99999999999988 7764331 123345566664211100 01 13455544 679999887532 3569999
Q ss_pred Eec-CCHHHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+.. +++++++.+++.|++++++
T Consensus 352 ~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 352 LYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 965 7999999999999998875
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=110.99 Aligned_cols=205 Identities=16% Similarity=0.158 Sum_probs=117.7
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
+|+|+ |+||+|.+.+ +++|.++|+ +|++||+|++|+....... ...... ..+.+++..+.+
T Consensus 130 tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~--~~~g~~----------~~d~~~~S~~~~ 190 (377)
T 3ju7_A 130 VAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGG--MHYGQD----------FSGMIIYSFHAT 190 (377)
T ss_dssp EEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETT--EETTTT----------CSSEEEEECBTT
T ss_pred ceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECC--EeccCC----------CCcEEEEECCCC
Confidence 78766 6788999988 888899999 9999999999984321111 010000 113333344457
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhccccC--------------CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMSSFG--------------LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~--------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
|.++ +| +.|+++++++.+.+.++.....+ ..+.+........++. +....++.+++.
T Consensus 191 K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------l~~~~~~~~~~~ 261 (377)
T 3ju7_A 191 KPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKK-------WDDKLKERTRIS 261 (377)
T ss_dssp SSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHH
T ss_pred CcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 9998 45 57899998887776665443211 1333433333333332 334444555556
Q ss_pred HHHHHHHHhcC---CceecCCc--eE--EEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC--CCCC--------
Q 044773 158 RKLVSGLEKAG---ISCLKSNA--GL--FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS--CHCT-------- 220 (289)
Q Consensus 158 ~~l~~~l~~~g---~~~~~~~~--g~--~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--f~~~-------- 220 (289)
+++.+.|.+++ ..+.+..+ .+ ++.+.+++.. +..++...|. +.||.+..+.. +...
T Consensus 262 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~-~~gI~~~~~~~~~~~~~~~~~~~~~ 334 (377)
T 3ju7_A 262 EWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RNKQVIEDLK-KQKIEARLYFSPSCHQQVLFRNYKS 334 (377)
T ss_dssp HHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CHHHHHHHHH-TTTBCCBCTTSSCGGGSGGGTTSCB
T ss_pred HHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh------hHHHHHHHHH-HCCCceecccCCccccchhhhcCCC
Confidence 66677777663 22322221 11 2234444321 1245666665 67999877652 1100
Q ss_pred C---------CCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 221 E---------PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 221 ~---------~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
. .+.+||.+.. +++++++..++.|+++++..
T Consensus 335 ~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 335 TDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp SCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred CCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 0 2469999954 79999999999998887653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-11 Score=107.89 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=130.1
Q ss_pred CCCccEEEEeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 9 HLKVKGVLVTNPSNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.+++++|++++..|.||.+ .+ +++|. +|+++++|.+++- |..+.++.++ + +++
T Consensus 164 ~~~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~----g~~pidv~~~------------~--~~~ 217 (386)
T 3qm2_A 164 SDNAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSSTI----LSAPLDVSRY------------G--VIY 217 (386)
T ss_dssp CTTCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTTT----TSSCCCGGGC------------S--EEE
T ss_pred CCCCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEccccc----CCCCCCcccc------------C--EEE
Confidence 3678999999888889996 66 55553 7999999999983 3444444433 3 466
Q ss_pred ecCccccCCCCceEEEEEecCHHHH-------------HHHHhccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVV-------------AAATKMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKR 152 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~-------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~ 152 (289)
.|..|.+|.+| +|+++++++.+. ...+....++++|.....++..+++. +.+. +++..++
T Consensus 218 ~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~---~~~~gG~~~i~~~ 292 (386)
T 3qm2_A 218 AGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKW---LKAQGGVAAMHKI 292 (386)
T ss_dssp EETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHH---HHHHTHHHHHHHH
T ss_pred EecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHH
Confidence 89999998667 888888654311 11111222334555556666666553 2333 6778888
Q ss_pred HHHHHHHHHHHHHhcCCcee--cC--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEE
Q 044773 153 LKQRHRKLVSGLEKAGISCL--KS--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVC 228 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g~~~~--~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris 228 (289)
.++..+++++.|++.++... .+ .+...+.+.++.. . .+ ..+... ++++||.+.+|..+. +.+|+|
T Consensus 293 ~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~--~---~~-~~~~~~-L~~~gI~~~~g~~~~----~~iRiS 361 (386)
T 3qm2_A 293 NQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN--T---LD-KVFLEE-SFAAGLHALKGHRVV----GGMRAS 361 (386)
T ss_dssp HHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG--G---GH-HHHHHH-HHHTTEECCBCCTTT----CSEEEE
T ss_pred HHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc--c---cc-HHHHHH-HHHCCCEEeCCCCCc----CeEEEE
Confidence 99999999999998765211 11 1223445566531 1 11 245555 457899998875442 459999
Q ss_pred Eec-CCHHHHHHHHHHHHHHHHH
Q 044773 229 FAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 229 ~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+.. ++++|++.+++.|+++.++
T Consensus 362 ~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 362 IYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Confidence 965 7999999999999998765
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=103.57 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=131.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|.+++..|.||.+.+. +++ +++++++|.+++. +..+.++. +.++++.
T Consensus 138 ~~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~----g~~~id~~--------------~~d~~~~ 190 (361)
T 3m5u_A 138 SDNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSDF----FSRKVDFS--------------NIALFYG 190 (361)
T ss_dssp CTTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGGT----TSSCCCCT--------------TEEEEEE
T ss_pred CCCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEccccc----CCCCCCcc--------------cCCEEEE
Confidence 3578999999888899998762 233 4999999999983 33323322 3347889
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHH--------------HhccccCCCChHHHHHHHHHhCCchHHHHH--HHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAA--------------TKMSSFGLVSSQTQYLLSALLSDKKFAQNY--ISENKKR 152 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~--------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~--~~~~~~~ 152 (289)
|.+|.+|.+| +|+++++++.+.... +....++++|.....++..+++. +.+. ++...++
T Consensus 191 s~~K~~gp~G--~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~---l~~~gG~~~i~~~ 265 (361)
T 3m5u_A 191 GVQKNAGISG--LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDW---LLNQGGLDKVHEK 265 (361)
T ss_dssp ETTTTSSCTT--CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHTTTCHHHHHHH
T ss_pred echhccCCCc--cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHH---HHHccCHHHHHHH
Confidence 9999999667 788888655442221 11122344555555555555542 2333 5777888
Q ss_pred HHHHHHHHHHHHHhcC-C-ceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 153 LKQRHRKLVSGLEKAG-I-SCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g-~-~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++..+++++.|++++ + ....+. ....+.+.++.. .. .+ .++... ++++||.+.+|... .+.+|+
T Consensus 266 ~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~-~~-~~~~~~-L~~~gI~~~~g~~~----~g~iRi 335 (361)
T 3m5u_A 266 NSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KD-LE-PLFVKE-AEEAGMIGLKGHRI----LGGIRA 335 (361)
T ss_dssp HHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TT-HH-HHHHHH-HHHTTEECCBCCTT----TCSEEE
T ss_pred HHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hh-hh-HHHHHH-HHHCCCEEecCCCc----cCeEEE
Confidence 8999999999999885 5 433221 122444555531 01 11 235544 45779999877542 246999
Q ss_pred EEec-CCHHHHHHHHHHHHHHHHH
Q 044773 228 CFAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
|+.. ++++|++.+++.|+++.++
T Consensus 336 S~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 336 SIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHHHHHHh
Confidence 9965 7999999999999998765
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-10 Score=102.24 Aligned_cols=232 Identities=15% Similarity=0.091 Sum_probs=135.3
Q ss_pred hHHHhhhCC-CccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC-ccChhhhhhccccccC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (289)
+|+++.+++ +..++++++|+ |..|.+-+ +++|+++|++||+.+++|+||......... +.+..++
T Consensus 205 le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~--------- 272 (501)
T 3hl2_A 205 VEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARV--------- 272 (501)
T ss_dssp HHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhc---------
Confidence 677777763 45555666664 43344445 999999999999999999999864211111 1111111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh-ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRH 157 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (289)
..-++++.|.+|.+-++ +.-|.+..+++.+.+.+.. +.+.. .+++...+...++.-+ .+.++++.+...++.
T Consensus 273 --GrAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~-S~Spsldl~~tLL~lG---r~Gy~~ll~e~~ela 345 (501)
T 3hl2_A 273 --GRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRA-SASPSLDVLITLLSLG---SNGYKKLLKERKEMF 345 (501)
T ss_dssp --SCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCB-CSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred --CCCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 12457899999998644 2224555666655544433 32222 3444544555554433 333466666666666
Q ss_pred HHHHHHHHhc----CCceecCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeE----EeCCC----------CCC
Q 044773 158 RKLVSGLEKA----GISCLKSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLN----ISPGS----------SCH 218 (289)
Q Consensus 158 ~~l~~~l~~~----g~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~----------~f~ 218 (289)
++|.+.|+++ |-++.... ..+.+.+.+....... ..+...+...|. ..+|- |.+|. +||
T Consensus 346 ~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~-~~~~t~~gs~Lf-~r~vsG~Rvv~~~~~~~i~g~~f~~~g 423 (501)
T 3hl2_A 346 SYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHR-DKAVTQLGSMLF-TRQVSGARVVPLGSMQTVSGYTFRGFM 423 (501)
T ss_dssp HHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTT-SCHHHHHHHHHH-HTTCCSCEEECTTCCEEETTEEESSTT
T ss_pred HHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccc-cccHHHHHHHHH-hcCCCcceeecCCCceEECCeeecCcc
Confidence 6777777664 54544333 3344445555432111 112233444444 44662 44555 555
Q ss_pred C----CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHHh
Q 044773 219 C----TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTT 254 (289)
Q Consensus 219 ~----~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~ 254 (289)
. .+..|+-++.+- .+.+|++.++++|.+++.++.+.
T Consensus 424 ~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 424 SHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp TTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4 234688888854 79999999999999999987653
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-10 Score=101.34 Aligned_cols=202 Identities=10% Similarity=-0.007 Sum_probs=114.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|+++| ++|...+ +++|.++|+++|+++|+|++|+...... ...+ +. ..+...+...
T Consensus 127 ~~~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~-g~-------~~~~~~~s~~ 187 (390)
T 3b8x_A 127 DSTKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATFN-----NKCA-GT-------FGLMGTFSSF 187 (390)
T ss_dssp TTEEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEET-----TEET-TS-------SSSEEEEECC
T ss_pred cCCeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEEC-----Cccc-cc-------ccceEEEEcc
Confidence 4689988875 3454445 9999999999999999999998421111 1111 00 0011111223
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcccc-----------------------------CC----CChHHHHHHHHHh
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-----------------------------GL----VSSQTQYLLSALL 136 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-----------------------------~~----~~~~~q~~~~~~l 136 (289)
.+|.++ +|. .|+++++++.+.+.+...... .. .+.+...+....+
T Consensus 188 ~~k~~~-~g~-gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l 265 (390)
T 3b8x_A 188 YSNHIA-TME-GGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL 265 (390)
T ss_dssp TTSSSC-SSS-CEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH
T ss_pred CCCCCc-cCC-ceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH
Confidence 355554 332 399999775554433321100 00 2233333222222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC--CceE-EEEEecCccccCCChhhHHHHHHHHHHhcCeEEe
Q 044773 137 SDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKS--NAGL-FCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS 212 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~-~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 212 (289)
+.+++..++.+++++++.+.|.++ |+++..+ ..++ .+++.++.... .+..++...|. +.||.+.
T Consensus 266 -------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~L~-~~gI~v~ 333 (390)
T 3b8x_A 266 -------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSG----VIRKQLVENLN-SAGIECR 333 (390)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSC----CCHHHHHHHHH-HTTBCCB
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCc----ccHHHHHHHHH-HCCCCee
Confidence 235567777888889999999887 6666543 2333 24455542110 11245666665 6799988
Q ss_pred CC---CCCCC-C---------C----------CCeEEEEEec-CCHHHHHHHHHHH
Q 044773 213 PG---SSCHC-T---------E----------PGWFRVCFAN-MSEDTLKLSMQRL 244 (289)
Q Consensus 213 pg---~~f~~-~---------~----------~~~~Ris~~~-~~~e~l~~~l~~l 244 (289)
+. ..+.. + . .+.+||++.. ++++|++.+++.|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred eecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 62 21111 0 0 1359999954 8999999998876
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.5e-09 Score=92.97 Aligned_cols=219 Identities=14% Similarity=0.143 Sum_probs=141.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..... +||+|++--..+|- .++ .+++.++|.+-|+++++|-+|......+...++....
T Consensus 195 ~~~~A~~~-kPklIi~G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~------------ 256 (490)
T 3ou5_A 195 LALTARLF-RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH------------ 256 (490)
T ss_dssp HHHHHHHH-CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT------------
T ss_pred HHHHHhhc-CCCeEEECCccCcc--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc------------
Confidence 45555665 89997776555542 455 8888888999999999999995332323333333222
Q ss_pred CceEEEecCccccCCCCceEEEEEecCH--------------HHHHHHHhc-cccCCCChH--HHHHHHHHhCCchHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDD--------------TVVAAATKM-SSFGLVSSQ--TQYLLSALLSDKKFAQN 144 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~--------------~~~~~~~~~-~~~~~~~~~--~q~~~~~~l~~~~~~~~ 144 (289)
-.++.+|.+|+| .|-|-|.|+++++ .+.+.+... -+....+++ ...+.+.++.+ .+..
T Consensus 257 -ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~E--a~~p 331 (490)
T 3ou5_A 257 -ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ--ACTP 331 (490)
T ss_dssp -CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HHSH
T ss_pred -ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHH--HHhH
Confidence 237899999998 5556699998653 234444432 111223333 22333333332 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHC 219 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~ 219 (289)
..++-.++...+.+.|.+.|.+.|+++.. ...+..+++++...--. -+.++.+|++.||.+. |+. -.+
T Consensus 332 ~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~t------G~~ae~~Le~agItvNkN~iP~D-~sp 404 (490)
T 3ou5_A 332 MFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD------GARAERVLELVSITANKNTCPGD-RSA 404 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHTTEECEEECCTTC-CCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCCC------HHHHHHHHHHcCcEECCCCCCCC-CCC
Confidence 56777778888999999999999998764 33345667887653211 2467778889999874 544 122
Q ss_pred CCCCeEEEEEec-----CCHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.|||+... ..++|+++..+-|.+++..
T Consensus 405 ~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~ 440 (490)
T 3ou5_A 405 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 335679999842 4678999999988888764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-08 Score=92.32 Aligned_cols=233 Identities=15% Similarity=0.066 Sum_probs=126.1
Q ss_pred hHHHhhhCC-CccEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPS-NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~-NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
|++++.+++ +.+++++.+|+ +.+|.+-+ +++|+++|++||+++++|+||..+... ...+..+. + +
T Consensus 187 le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~~------~~~l~~~a-~---~ 253 (450)
T 3bc8_A 187 VEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSK------CMHLIQQG-A---R 253 (450)
T ss_dssp HHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH------HHHHHHHH-H---H
T ss_pred HHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhhh------hHhHHHHH-h---c
Confidence 677787764 46677888884 45567666 999999999999999999999854211 11111100 0 0
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
...-+.++.|.+|.++ .....|++..++....+.+.........++++......++..+ .+-+++..+...+..++
T Consensus 254 ~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G---~~g~~~~i~~~~~~a~~ 329 (450)
T 3bc8_A 254 VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---CSGYRKLLKERKEMFVY 329 (450)
T ss_dssp HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 0133567899999997 4445677777665554444322111123444444444433322 22233343333444455
Q ss_pred HHHHHHh----cCCceecCCc-eEEEEEecCccccCCChhhHHHHHHHHHHhcC---eEEeC---------------CCC
Q 044773 160 LVSGLEK----AGISCLKSNA-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVK---LNISP---------------GSS 216 (289)
Q Consensus 160 l~~~l~~----~g~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~g---i~v~p---------------g~~ 216 (289)
+.+.+++ +|.++...+. +.-..+.+...... .-.|..++.-.+. ..| ..+.+ |..
T Consensus 330 l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~D~tkl~i~~~-~~g~sG~~v~~~~~~~~~~~~~l~~~gi~ 407 (450)
T 3bc8_A 330 LSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH-HDKAVTQLGSMLF-TRQVSGARAVPLGNVQTVSGHTFRGFMSH 407 (450)
T ss_dssp HHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS-SSCHHHHHHHHHH-HTTCCSCEEECSCCEEEETTEEEETTTTT
T ss_pred HHHHHHhhHHhcCceecCCccCCCcceeeccccccc-ccCCCceeEEEec-CCCCccceeeecccccchhHHHHHHcCCe
Confidence 5555543 3666654331 11111223221111 0123345555543 223 33331 111
Q ss_pred CCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 217 CHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 217 f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.-..+..++-+.++. .++++++.++++|.++.++..+
T Consensus 408 ~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 408 ADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp SSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 112334666666643 7999999999999998876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 289 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 1e-40 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 7e-40 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 7e-39 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 9e-37 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-33 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 6e-30 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 5e-25 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-24 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-19 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 3e-19 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 7e-19 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 1e-18 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 3e-18 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 2e-16 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 2e-15 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 3e-15 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-13 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-12 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 6e-12 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 6e-12 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 3e-10 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 2e-09 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 2e-08 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 4e-06 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 143 bits (361), Expect = 1e-40
Identities = 52/251 (20%), Positives = 104/251 (41%), Gaps = 20/251 (7%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
Q+ Q K K ++ PSNP G + +E+ + E + ++SDEIY ++
Sbjct: 155 QIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ 214
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF 121
+SI + + R + +K + G+RVG + V AA S
Sbjct: 215 HLSIGAASPE-------AYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHST 267
Query: 122 GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLFC 180
V + QY ++ + +Q+ + E +R R ++ L G+ C K + +
Sbjct: 268 SNVCTFAQY---GAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYM 324
Query: 181 WVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLS 240
+ + + T + ++ +++ ++ PG++ R+ +A DT+K
Sbjct: 325 FPSI-----AKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRG 376
Query: 241 MQRLKAFVDSI 251
M+RL+ F+ I
Sbjct: 377 MERLEKFLHGI 387
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 142 bits (357), Expect = 7e-40
Identities = 206/250 (82%), Positives = 229/250 (91%), Gaps = 1/250 (0%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
AYQ A+KR+L+VKGVLVTNPSNPLGTTM+RNEL LL++F+ +K IHLISDEIYSGT FSS
Sbjct: 179 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 238
Query: 61 PGFVSIMEILKDRNC-ENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS 119
P F+S+ME+LKDRNC EN+EVW RVH+VYSLSKDLGLPGFRVGAIYSNDD VVAAATKMS
Sbjct: 239 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 298
Query: 120 SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF 179
SFGLVSSQTQ+LLSA+LSDKK +NYI+EN KRLKQR +KLVSGL+K+GISCL NAGLF
Sbjct: 299 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 358
Query: 180 CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKL 239
CWVDMRHLL SNTFEAEMELWKKIVY+V LNISPGSSCHCTEPGWFRVCFAN+ E TL L
Sbjct: 359 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 418
Query: 240 SMQRLKAFVD 249
+MQRLKAFV
Sbjct: 419 AMQRLKAFVG 428
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 138 bits (348), Expect = 7e-39
Identities = 45/247 (18%), Positives = 101/247 (40%), Gaps = 21/247 (8%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
++ + + K ++V +P+NP G + L L E + +L+SDEIY ++
Sbjct: 156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAAT-KMSSF 121
F S + + V +K + G+R+G + + A A+ S
Sbjct: 216 F-SPGRVAPE----------HTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQST 264
Query: 122 GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 181
+ Q+ L++++ ++ ++ ++ ++R L+ GL G+ ++ + +
Sbjct: 265 TSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVL 324
Query: 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241
+D + AE L + + PG+ G R+ +A SE+ L+ ++
Sbjct: 325 MDTSPIAPDEVRAAERLLEAGVA------VVPGTDFAA--FGHVRLSYAT-SEENLRKAL 375
Query: 242 QRLKAFV 248
+R +
Sbjct: 376 ERFARVL 382
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 132 bits (333), Expect = 9e-37
Identities = 40/246 (16%), Positives = 101/246 (41%), Gaps = 14/246 (5%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+L + K + +++ +P NP G +++ +L + +F+ E ++ +ISDE+Y ++
Sbjct: 151 ELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR 210
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
SI + V SK + G+R+G + + +
Sbjct: 211 HYSIASLDGMFER--------TITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNA 262
Query: 123 LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 182
+A + + + E +K +R + + L + G+ +K + +
Sbjct: 263 TCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFP 322
Query: 183 DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242
+R +T + + ++ + ++ + PGS+ G+ R+ +A + + L+ +M
Sbjct: 323 RIR-----DTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMD 376
Query: 243 RLKAFV 248
R++ +
Sbjct: 377 RMERVL 382
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 123 bits (310), Expect = 3e-33
Identities = 143/247 (57%), Positives = 190/247 (76%), Gaps = 1/247 (0%)
Query: 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSP 61
Y+ AQK ++KVKG+++TNPSNPLGTT+ ++ L +++F + NIHL+ DEIY+ TVF +P
Sbjct: 179 YENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238
Query: 62 GFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF 121
FVSI EIL ++ + VHIVYSLSKD+GLPGFRVG IYS +D VV A KMSSF
Sbjct: 239 QFVSIAEILDEQEMTYCN-KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF 297
Query: 122 GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCW 181
GLVS+QTQY L+A+LSD+KF N++ E+ RL +RH+ +GLE GI CLK+NAGLFCW
Sbjct: 298 GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCW 357
Query: 182 VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241
+D+R LL +TF++EM LW+ I+ DVKLN+SPGSS C EPGWFRVCFANM + T+ +++
Sbjct: 358 MDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIAL 417
Query: 242 QRLKAFV 248
R++ FV
Sbjct: 418 ARIRRFV 424
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 114 bits (285), Expect = 6e-30
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 25/245 (10%)
Query: 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEIL 70
+ K + V NP+NP G + L ++N E I +ISDEIY +
Sbjct: 166 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIY----------DLMTYEG 215
Query: 71 KDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSND-----DTVVAAATKMSSFGL-V 124
+ + + V ++ LSK G+R+G +Y D V A +++ L
Sbjct: 216 EHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCP 275
Query: 125 SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG-ISCLKSNAGLFCWVD 183
++ Q+ A L+ +Y+ E K+LK+R + L + IS K + +
Sbjct: 276 NTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK 332
Query: 184 MRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243
+ ++ + E ++++ + GS G FR F + L+ +M R
Sbjct: 333 ----IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDR 387
Query: 244 LKAFV 248
+ F+
Sbjct: 388 FEKFM 392
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 101 bits (252), Expect = 5e-25
Identities = 42/267 (15%), Positives = 87/267 (32%), Gaps = 45/267 (16%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
A + + +VT+P+NP G + K I D +Y
Sbjct: 186 AANYVNVSNPEQYIEMVTSPNNPEGL----------LRHAVIKGCKSIYDMVYYW----- 230
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS 120
P + I + +++++SK G G R G D++V +
Sbjct: 231 PHYTPI-----------KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT 279
Query: 121 FG--LVSSQTQYLLSALLSD--------KKFAQNYISENKKRLKQRHRKLVSGLEKAG-I 169
+TQ +L + K ++ + K+L++R + + L+++
Sbjct: 280 KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRF 339
Query: 170 SCLKSNAGLFCWVDMRHLLSSNTF------EAEMELWKKIVYDVKLNISPGSSCHCTEPG 223
S + +C R S ++ E + + + ++N G
Sbjct: 340 SYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSR 398
Query: 224 WFRVCFANMSEDTLKLSMQRLKAFVDS 250
+ R+ ++D M LK V +
Sbjct: 399 YVRLSLIK-TQDDFDQLMYYLKDMVKA 424
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 99.7 bits (247), Expect = 1e-24
Identities = 53/246 (21%), Positives = 109/246 (44%), Gaps = 25/246 (10%)
Query: 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFV 64
K K VL+ +P+NP G R L LV ++N ++ISDE+Y V++
Sbjct: 155 EGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTS 214
Query: 65 SIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV 124
+ +E ++R+ + SK + G+RVG + S++ A + S
Sbjct: 215 ILD---------VSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSC 265
Query: 125 SSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDM 184
+ + K + S + K+R +V L+K G+ ++ + + +
Sbjct: 266 INTVAQYAAL-----KALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV 320
Query: 185 RHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRL 244
R +++ ++++ + K+ + PGS+ +PG+ R+ FA S + L ++ R+
Sbjct: 321 RG--------DDVKFCERLLEEKKVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRI 369
Query: 245 KAFVDS 250
+ F++S
Sbjct: 370 EDFLNS 375
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (209), Expect = 2e-19
Identities = 38/252 (15%), Positives = 75/252 (29%), Gaps = 45/252 (17%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ + NP G + + L EK + D Y G
Sbjct: 164 NSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEE 223
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
+ + + S SK+ GL RVGA S
Sbjct: 224 DAEGLRAFAAM-------HKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK 276
Query: 123 L--------VSSQTQYLLSALLSDKKFA---QNYISENKKRLKQRHRKLVSGLEKAGI-- 169
+ +++ +LS+ + +++ ++R+++ + V+ L++ G
Sbjct: 277 AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANR 336
Query: 170 --SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKI-VYDVKLNISPGSSCHCTEPGWFR 226
S + G+F + + T E + L ++ VY R
Sbjct: 337 DFSFIIKQNGMFSFSGL-------TKEQVLRLREEFGVY-----AVASG----------R 374
Query: 227 VCFANMSEDTLK 238
V A M+ D +
Sbjct: 375 VNVAGMTPDNMA 386
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 84.4 bits (207), Expect = 3e-19
Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 25/248 (10%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
L + + + +L+ P NP G EL + ++ LISDE+Y
Sbjct: 144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVY--------- 194
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
+ + R V S K L G+RVG I + + A
Sbjct: 195 --DELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTS 252
Query: 123 LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 182
+ A + + ++ ++R L GL G+ F
Sbjct: 253 FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMA 312
Query: 183 DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP--GWFRVCFANMSEDTLKLS 240
++ + ++V + ++ + P S+ + +P FR F +E+ L L+
Sbjct: 313 ELPGWDA-----------FRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLA 360
Query: 241 MQRLKAFV 248
++RL V
Sbjct: 361 LERLGRVV 368
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 83.6 bits (205), Expect = 7e-19
Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 22/232 (9%)
Query: 22 NPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81
NP G TMS + L+ E + ++ D YS +S ++ + +
Sbjct: 182 NPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPP---------IKHFDDY 232
Query: 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKF 141
RV + + SK L PGFR+G + ++ + S L ++ ++ + +
Sbjct: 233 GRVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY 291
Query: 142 AQNYISENKKRLKQRHRKLVSGLEK---AGISCLKSNAGLFCWVDMRHLLSSNTFEAEME 198
+I + + K R ++ LE+ G+ K G+F V + + +
Sbjct: 292 LDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAV 351
Query: 199 LWKKIVYDVKLNISPGS--SCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248
+ PG H + R+ F + E+T++ ++RL +
Sbjct: 352 -------AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-18
Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 26/253 (10%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
K +++ P+NPLG SR EL L+ + + ++ I+DE+Y V+ +SI +
Sbjct: 172 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG 231
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLV-----SS 126
W R + S K G++VG + D + T + +
Sbjct: 232 M--------WERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQA 283
Query: 127 QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRH 186
+ +Y + + +++ ++ L+ G+ L F D+
Sbjct: 284 AVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISD 343
Query: 187 LLSSNT-------FEAEMELWKKIVYDVKLNISPGSSCHCTE-----PGWFRVCFANMSE 234
+ K ++ + L P S + + R CF E
Sbjct: 344 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DE 402
Query: 235 DTLKLSMQRLKAF 247
TL+ ++L+ +
Sbjct: 403 ATLQAMDEKLRKW 415
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 81.9 bits (201), Expect = 3e-18
Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 42/264 (15%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ VL NP GT + + + + + + + D Y G +
Sbjct: 175 SDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLE 234
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
+ + S SK+ GL RVG + + +S
Sbjct: 235 KDAWAIRYFV------SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQ 288
Query: 123 LVSSQT--------QYLLSALLSDKKFA---QNYISENKKRLKQRHRKLVSGLEKAGISC 171
+ T +++ LSD + + R+ +L + LE
Sbjct: 289 KIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG 348
Query: 172 ----LKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227
+ G+F + + N + E + +K +Y + P R+
Sbjct: 349 TWNHITDQIGMFSFTGL------NPKQVEYLINQKHIY-----LLPSG----------RI 387
Query: 228 CFANMSEDTLKLSMQRLKAFVDSI 251
++ L + V I
Sbjct: 388 NMCGLTTKNLDYVATSIHEAVTKI 411
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 76.6 bits (187), Expect = 2e-16
Identities = 39/253 (15%), Positives = 74/253 (29%), Gaps = 43/253 (16%)
Query: 15 VLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRN 74
VL + NP G + + +V+ I KN + D Y G + L
Sbjct: 180 VLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239
Query: 75 CENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV------------VAAATKMSSFG 122
+ V + S +K+ G+ G RVG + A S
Sbjct: 240 LST---VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVS 296
Query: 123 LVSSQTQYLLSALLSD---KKFAQNYISENKKRLKQRHRKLVSGLEKAGI----SCLKSN 175
+ +++ LL + + R+ + L L K G + +
Sbjct: 297 NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQ 356
Query: 176 AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSED 235
G+F + L+ + E VY + R A +++
Sbjct: 357 CGMFSFTG----LTPQMVKRLEE--THAVY-----LVASG----------RASIAGLNQG 395
Query: 236 TLKLSMQRLKAFV 248
++ + + V
Sbjct: 396 NVEYVAKAIDEVV 408
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 73.7 bits (179), Expect = 2e-15
Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 25/266 (9%)
Query: 1 AYQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSS 60
+L + K K +++ P NPLG M R EL ++ N + N+ +SDE+Y VF
Sbjct: 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP 220
Query: 61 PGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAA----- 115
+ I C +W R + S K L G+++G Y + +
Sbjct: 221 FEHIRI--------CTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQN 272
Query: 116 TKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSN 175
+ + L K + Y + L + + S L + G++
Sbjct: 273 CVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ 332
Query: 176 AGLFCWVDMRHLLSSNTFEAE------MELWKKIVYDVKLNISPGSSCHCTEP-----GW 224
G F D L S E K + V L P S+ + +
Sbjct: 333 GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDF 392
Query: 225 FRVCFANMSEDTLKLSMQRLKAFVDS 250
R CF ++ L+ + + L+ + S
Sbjct: 393 VRYCFFK-KDENLQKAAEILRKWKGS 417
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 73.0 bits (177), Expect = 3e-15
Identities = 24/173 (13%), Positives = 61/173 (35%), Gaps = 9/173 (5%)
Query: 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTV-----VAAATKMSSFGLVSSQTQYLLSAL 135
I+ +K+L +PG+R+G + D + ++
Sbjct: 239 TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGE 298
Query: 136 LSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEA 195
++ K + E G++ ++ + L +
Sbjct: 299 ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID-LEKYRDIKT 357
Query: 196 EMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248
++E ++K++ + + + PG+ H PG+ R+ + + +++R+KAF
Sbjct: 358 DVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIKAFC 407
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 66.5 bits (161), Expect = 4e-13
Identities = 32/250 (12%), Positives = 81/250 (32%), Gaps = 43/250 (17%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
+L NP G ++ ++ + ++ + + + D Y G + +
Sbjct: 174 SIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA 233
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--------SFGL 123
+ S SK L G RVG + + AA + ++
Sbjct: 234 SAGLPA-------LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSS 286
Query: 124 VSSQTQYLLSALLSDKKFAQNYISENK---KRLKQRHRKLVSGLEKAG----ISCLKSNA 176
+ +++A+L+D+ ++++E + R+ ++LV L L +
Sbjct: 287 PPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQR 346
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236
G+F + + ++ + + + R+C A ++
Sbjct: 347 GMFSYTGL-----------SAAQVDRLREEFGVYLIASG----------RMCVAGLNTAN 385
Query: 237 LKLSMQRLKA 246
++ + A
Sbjct: 386 VQRVAKAFAA 395
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 65.0 bits (157), Expect = 1e-12
Identities = 29/252 (11%), Positives = 70/252 (27%), Gaps = 45/252 (17%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+L NP G ++ ++ + + + + + D Y G
Sbjct: 161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEE 220
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
+ ++ R E I S SK+ G+ R G + + +
Sbjct: 221 DAAGTRLIASRIPEV-------LIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMA 273
Query: 123 LVSSQTQYLLSALLSDKKFA-----------QNYISENKKRLKQRHRKLVSGLEKAG--- 168
++ QT + + + + + +L L
Sbjct: 274 FLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD 333
Query: 169 -ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKI-VYDVKLNISPGSSCHCTEPGWFR 226
+ + G+F + T E + ++ +Y + S R
Sbjct: 334 RFGFVAEHRGMFSRLGA-------TPEQVKRIKEEFGIY-----MVGDS----------R 371
Query: 227 VCFANMSEDTLK 238
+ A ++++T+
Sbjct: 372 INIAGLNDNTIP 383
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 63.1 bits (152), Expect = 6e-12
Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 44/253 (17%)
Query: 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILK 71
+L NP G + + L + + ++N+ D Y G +
Sbjct: 176 SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRH- 234
Query: 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVA--------AATKMSSFGL 123
E V + S +K++GL G R GA +
Sbjct: 235 -----FIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSN 289
Query: 124 VSSQTQYLLSALLSDKKFA---QNYISENKKRLKQRHRKLVSGLEKAG----ISCLKSNA 176
+ S +L+ + + R+ +LVS L+K G +
Sbjct: 290 PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQI 349
Query: 177 GLFCWVDMRHLLSSNTFEAEMELWKKI-VYDVKLNISPGSSCHCTEPGWFRVCFANMSED 235
G+FC+ + E L K+ +Y ++ R+ A ++
Sbjct: 350 GMFCFTGL-------KPEQVERLTKEFSIY-----MTKDG----------RISVAGVASS 387
Query: 236 TLKLSMQRLKAFV 248
+ +
Sbjct: 388 NVGYLAHAIHQVT 400
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 62.8 bits (151), Expect = 6e-12
Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 17/245 (6%)
Query: 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG 62
+ A + + V++ P NP T + + L I I +ISDE+Y FS G
Sbjct: 151 EFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG 210
Query: 63 FVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG 122
S+ + ++ R V S K + G++VG +
Sbjct: 211 HASV--------LAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLT 262
Query: 123 LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWV 182
+ AL + + +Q+ LV+ L ++ + L F V
Sbjct: 263 FSVNTPAQ--LALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV 320
Query: 183 DMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG--WFRVCFANMSEDTLKLS 240
D + + + ++E + + + + P S R+CFA E TL +
Sbjct: 321 DYSAVSTLD----DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAA 375
Query: 241 MQRLK 245
+RL+
Sbjct: 376 AERLR 380
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 57.9 bits (138), Expect = 3e-10
Identities = 38/246 (15%), Positives = 83/246 (33%), Gaps = 15/246 (6%)
Query: 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIM 67
+ K +L +P NP+G ++EL + + + + ++ L SDEI+ +
Sbjct: 161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQ 220
Query: 68 EILKDRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQ 127
I + ++ ++ + SK + G + I + + TK
Sbjct: 221 SI-------DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPF 273
Query: 128 TQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE--KAGISCLKSNAGLFCWVDMR 185
T A K ++ K + + R + E I W+D R
Sbjct: 274 TTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFR 333
Query: 186 HLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLK 245
L + + +++ ++ G G+ R+ A ++ S++RL
Sbjct: 334 ALKMD-----HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLN 387
Query: 246 AFVDSI 251
+ +
Sbjct: 388 KALKDL 393
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 55.9 bits (133), Expect = 2e-09
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 165 EKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--P 222
+ G+ +KS GLF W+ + + + K+ PG +
Sbjct: 332 DIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK-------RKKVFYVPGRVFKVYDEPS 384
Query: 223 GWFRVCFANMSEDTLKLSMQRLKAFV 248
R+ F ++ + ++RL+ V
Sbjct: 385 PSMRLSFCLPPDEKIVEGIKRLREVV 410
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 52.5 bits (124), Expect = 2e-08
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 171 CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230
+ W+D+R L + L K ++ K+ I PG + G+ R+
Sbjct: 286 WQIPQSTYLAWLDLRPLNID-----DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG 340
Query: 231 NMSEDTLKLSMQRLKAFVDSI 251
L+ + L + ++
Sbjct: 341 -CPRSKLEKGVAGLINAIRAV 360
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (105), Expect = 4e-06
Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 15/167 (8%)
Query: 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKK 140
+ + I+ +LSK L G R G +N++ + ++ + L + AL
Sbjct: 201 YPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI 260
Query: 141 FAQNYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELW 200
A ++ + E + + + + + + LW
Sbjct: 261 VAMRERVAQIIAEREYLIAAL--KEIPCVEQVFDSETNYILARFK-----ASSAVFKSLW 313
Query: 201 KKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247
+ + N P G R+ E++ ++ + L+A
Sbjct: 314 DQGIILRDQNKQPSL------SGCLRITVGT-REESQRV-IDALRAE 352
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.97 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.97 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.97 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.97 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.96 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.96 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.96 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.96 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.95 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.86 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.83 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.79 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.78 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.69 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.65 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.64 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.63 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.62 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.61 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.57 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.57 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.57 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.54 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.53 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.52 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.51 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.51 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.49 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.49 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.48 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.47 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.47 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.47 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.45 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.45 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.45 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.45 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.42 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.42 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.41 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.38 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.37 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.35 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.35 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.35 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.35 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.33 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.32 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.31 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.3 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.29 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.29 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.24 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.21 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.17 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.15 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.12 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.11 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.94 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.82 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 98.69 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.56 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.49 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.46 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.34 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.33 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.33 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.19 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 81.97 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.4e-40 Score=301.94 Aligned_cols=249 Identities=82% Similarity=1.296 Sum_probs=218.5
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccc-cCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCE-NTEVW 81 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 81 (289)
+++.++..++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.|++..+.++.++.++.++. ..+..
T Consensus 181 ~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 260 (431)
T d1m7ya_ 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVW 260 (431)
T ss_dssp HHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGG
T ss_pred hhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccC
Confidence 34455667899999999999999999999999999999999999999999999989888888888776643211 12345
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
+++++++||||.+|++|+|+||++++++.+............+++..+.++++.+.+..+.++++++.++.++++++.+.
T Consensus 261 ~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (431)
T d1m7ya_ 261 QRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLV 340 (431)
T ss_dssp GGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhh
Confidence 78999999999999999999999998888877777777777688888888888888777667889999999999999999
Q ss_pred HHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 162 SGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 162 ~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
+.|++.|+++.+|++|+|+|++++.........++.++++.+++++||.+.||..|+..+++|+||+++..+++++++++
T Consensus 341 ~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al 420 (431)
T d1m7ya_ 341 SGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAM 420 (431)
T ss_dssp HHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHH
T ss_pred hhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHH
Confidence 99999999999999999999999988777777777889999999999999999999988899999999866788999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
+||+++++++
T Consensus 421 ~rL~~~l~~~ 430 (431)
T d1m7ya_ 421 QRLKAFVGEY 430 (431)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=6.4e-40 Score=298.81 Aligned_cols=247 Identities=57% Similarity=1.018 Sum_probs=217.1
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
+++.+..+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.|++..+.++.++..... ......+
T Consensus 180 ~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~-~~~~~~~ 258 (428)
T d1iaya_ 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQE-MTYCNKD 258 (428)
T ss_dssp HHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGG-GTTSCTT
T ss_pred hhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhh-ccccccc
Confidence 345566788999999999999999999999999999999999999999999999898888888877754310 0112457
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
++++++||||.++++|+|+||++++++.+.+.+.....+...+.+.|.++++.+....++++++++.++.++++++.+.+
T Consensus 259 ~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~ 338 (428)
T d1iaya_ 259 LVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTN 338 (428)
T ss_dssp SEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccccccccccccchhHHHHHH
Confidence 89999999999999999999999988888888887777776888899998888888777788899999999999999999
Q ss_pred HHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 163 GLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 163 ~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
.|+..|+++.+|++|+|+|++++.........++.++++.|++++||.+.||..|+..+++|+||+++..++++++++++
T Consensus 339 ~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~ 418 (428)
T d1iaya_ 339 GLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALA 418 (428)
T ss_dssp HHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHH
T ss_pred HHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHH
Confidence 99999999999999999999999877766667777899999999999999999999888999999998667889999999
Q ss_pred HHHHHHHH
Q 044773 243 RLKAFVDS 250 (289)
Q Consensus 243 ~l~~~l~~ 250 (289)
||++++..
T Consensus 419 Rl~~~l~~ 426 (428)
T d1iaya_ 419 RIRRFVGV 426 (428)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999864
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.1e-39 Score=288.39 Aligned_cols=228 Identities=18% Similarity=0.376 Sum_probs=196.4
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+.+....++.++.. ..+++++++|
T Consensus 158 ~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~--------~~~~~i~~~S 229 (388)
T d1gdea_ 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--------MFERTITVNG 229 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--------CGGGEEEEEE
T ss_pred cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccC--------CCCeEEEEeC
Confidence 57899999999999999999999999999999999999999999998887777777776632 4578999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
|||.+|++|+|+||++++++.+........ .....+.+.|.+++.++.+..+ .++.+..++.++++++.+.+.|...+
T Consensus 230 ~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (388)
T d1gdea_ 230 FSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMG 308 (388)
T ss_dssp STTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhccCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 999999999999999997655544443332 2344677999999999998876 77788899999999999999999989
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+.+..|++|+|+|+++++.. .+..++++.+++++||.+.||..|+..+++++||+++ .+++++++++++|++++
T Consensus 309 ~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~-~~~e~l~~al~rL~~~l 382 (388)
T d1gdea_ 309 LPTVKPKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-TAYEKLEEAMDRMERVL 382 (388)
T ss_dssp CCCCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 99999999999999987532 1235688889999999999999999878899999998 48899999999999999
Q ss_pred HHHH
Q 044773 249 DSIT 252 (289)
Q Consensus 249 ~~~~ 252 (289)
++++
T Consensus 383 ~e~k 386 (388)
T d1gdea_ 383 KERK 386 (388)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 8864
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=6.5e-38 Score=281.96 Aligned_cols=224 Identities=22% Similarity=0.396 Sum_probs=189.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++....++ ..+++++++|
T Consensus 162 ~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~-------~~~~~i~~~S 234 (388)
T d1j32a_ 162 PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE-------AYERSVVCSG 234 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH-------HHHTEEEEEE
T ss_pred CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc-------cccceeEecC
Confidence 578999999999999999999999999999999999999999999998887777777666442 3468999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
|||.|+++|+|+||++++++.+........ .....+.+.|.++..++... .+++++.++.++++++.+.+.|+++
T Consensus 235 ~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (388)
T d1j32a_ 235 FAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMP 311 (388)
T ss_dssp STTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChhhhhcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999996555444333222 23346778888888888765 5678999999999999999999988
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..|+||+|+|++++.... +..+++..+++++||.+.||..|+. ++++||+++. +++++++++++|+++
T Consensus 312 g~~~~~p~gg~~l~~~l~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~-~~e~l~~al~rl~~~ 383 (388)
T d1j32a_ 312 GLECPKPDGAFYMFPSIAKTGR-----SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKF 383 (388)
T ss_dssp TCBCCCCCBTTEECCBCGGGTC-----CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CCEecCCCceEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeC-CHHHHHHHHHHHHHH
Confidence 8999999999999999886432 2356888999899999999999985 6899999984 899999999999999
Q ss_pred HHHH
Q 044773 248 VDSI 251 (289)
Q Consensus 248 l~~~ 251 (289)
++..
T Consensus 384 l~~l 387 (388)
T d1j32a_ 384 LHGI 387 (388)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1e-37 Score=281.26 Aligned_cols=230 Identities=16% Similarity=0.236 Sum_probs=185.9
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
...+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....+...... +..+++++
T Consensus 160 ~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~-------~~~~~~i~ 232 (394)
T d1c7na_ 160 SKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDE-------QLADKTIT 232 (394)
T ss_dssp HTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCH-------HHHTTEEE
T ss_pred hccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhc-------ccccceee
Confidence 44568999999999999999999999999999999999999999999999887766555554433 24578899
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhccccC-CCCh-HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-LVSS-QTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~-~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
+.|+||.++++|+|+||++++++.+.+.+....... ..+. ..+.+++.. ..... .++.++.++.++++++.+.+.+
T Consensus 233 ~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l 310 (394)
T d1c7na_ 233 FTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEI-CYKEC-GKWLDGCIKVIDKNQRIVKDFF 310 (394)
T ss_dssp EECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHH-HHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhh-hhcch-hhhhcccccccchhhhhhhhhh
Confidence 999999999999999999998888877665544332 2222 333332222 22222 6778888999999999999998
Q ss_pred Hhc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHH
Q 044773 165 EKA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 165 ~~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
+.. ++.+..|+||+|+|++++... .+..+++..|++++||.+.||+.||..+++|+||+++ .++++++++++
T Consensus 311 ~~~~~~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~i~eal~ 384 (394)
T d1c7na_ 311 EVNHPEIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLE 384 (394)
T ss_dssp HHHCTTSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-SCHHHHHHHHH
T ss_pred hccccceeecCCCceeEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe-CCHHHHHHHHH
Confidence 875 677888999999999998632 1235688999999999999999999877899999998 48999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
||+++++++
T Consensus 385 rl~~~l~~L 393 (394)
T d1c7na_ 385 RLNKALKDL 393 (394)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-36 Score=272.85 Aligned_cols=219 Identities=19% Similarity=0.409 Sum_probs=179.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....+ ... ..+++++++|
T Consensus 163 ~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~----------~~~~~i~~~s 231 (382)
T d1b5pa_ 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP-GRV----------APEHTLTVNG 231 (382)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG-GGT----------CTTTEEEEEE
T ss_pred CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCH-HHc----------CCCCEEEEec
Confidence 57889999999999999999999999999999999999999999999887655433 233 3478999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
|||.|+++|+|+||++++++.+....... ......+.+.|.++..++........+.+..++.++++++.+.+.+.+.|
T Consensus 232 ~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 311 (382)
T d1b5pa_ 232 AAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG 311 (382)
T ss_dssp STTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhccCcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC
Confidence 99999999999999999655544433322 22333667888888888877665577888999999999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~l 248 (289)
+++..|+||+|+|++++....+ +..+...+. ++||.+.||+.|+. ++++||+++. ++|+++++++||++++
T Consensus 312 ~~~~~p~gg~~~~~~~~~~~~~-----~~~~~~~l~-e~gV~v~PG~~F~~--~~~iRis~~~-~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 312 LKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382 (382)
T ss_dssp CCBCCCSBTTEEEEECTTTCSS-----HHHHHHHHH-HTTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGGC
T ss_pred CeEecCCceEEEeEeCCCCCCC-----HHHHHHHHH-HCCEEEEeCcccCC--CCeEEEEEcC-CHHHHHHHHHHHHHhC
Confidence 9999999999999998754322 234555554 77999999999985 6799999984 8999999999998753
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-36 Score=273.61 Aligned_cols=224 Identities=24% Similarity=0.320 Sum_probs=184.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. ..+...+. ..+++++++
T Consensus 164 ~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~---------~~~~vi~~~ 233 (395)
T d1xi9a_ 164 TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLT---------KDVPVIVMN 233 (395)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHHC---------SSSCEEEEE
T ss_pred cccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccc-ccchhhcC---------CCCCEEEEe
Confidence 35789999999999999999999999999999999999999999998877544 34444442 457899999
Q ss_pred cCccccCCCCceEEEEEecCH-----HHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDD-----TVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~-----~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
||||+++++|+|+||+++++. .+.+...... .....+.+.|.++..++... .+++++.++.++++++.+.+
T Consensus 234 S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~ 310 (395)
T d1xi9a_ 234 GLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYK 310 (395)
T ss_dssp ESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986432 1222222222 23446778999988888765 56789999999999999999
Q ss_pred HHHhcC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKAG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|++.+ +.+..|+||+|+|++++..... +..+++..+++++||.+.||+.|+..+++|+||+++. +++++++++
T Consensus 311 ~L~~~~~~~~~~p~gg~~~~~~l~~~~~~----~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal 385 (395)
T d1xi9a_ 311 RLNEIPGISTTKPQGAFYIFPKIEVGPWK----NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAM 385 (395)
T ss_dssp HHHTSTTEECCCCCBSSEECCEECSCSCS----SHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHH
T ss_pred HHHhCCCceecCCCeeEEEeEECCCCCCC----CHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHH
Confidence 999984 6788899999999998854322 2356888899999999999999998778999999984 899999999
Q ss_pred HHHHHHHHH
Q 044773 242 QRLKAFVDS 250 (289)
Q Consensus 242 ~~l~~~l~~ 250 (289)
++|++++++
T Consensus 386 ~rl~~~l~e 394 (395)
T d1xi9a_ 386 DRFEKFMKE 394 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999986
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=3.4e-36 Score=273.16 Aligned_cols=231 Identities=21% Similarity=0.334 Sum_probs=189.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++..+.. ..++++++.
T Consensus 169 ~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~--------~~~~~i~~~ 240 (418)
T d2r5ea1 169 NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG--------MWERTITIG 240 (418)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGEEEEE
T ss_pred hccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccccccccc--------ccceeeeee
Confidence 457899999999999999999999999999999999999999999998887766666666532 458899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCch----HHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKK----FAQNYISENKKRLKQRHRKLVSG 163 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~ 163 (289)
|+||.++++|+|+||++++++.+........ ....++++.|.+++.++.... ..++++++.++.++.+++.+.+.
T Consensus 241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d2r5ea1 241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhh
Confidence 9999999999999999997655544443332 234477788887777665321 12567889999999999999999
Q ss_pred HHhcCCceecCCceEEEEEecCccccC------CChhhHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCeEEEEEecC
Q 044773 164 LEKAGISCLKSNAGLFCWVDMRHLLSS------NTFEAEMELWKKIVYDVKLNISPGSSCHCT-----EPGWFRVCFANM 232 (289)
Q Consensus 164 l~~~g~~~~~~~~g~~~~i~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~~Ris~~~~ 232 (289)
|++.|+++..|+||||+|++++..... ....+..+++..|++++||.+.||+.|+.. +++|+||+++.
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~- 399 (418)
T d2r5ea1 321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK- 399 (418)
T ss_dssp HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCS-
T ss_pred HhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecC-
Confidence 999999999999999999998754221 112455689999999999999999999864 25799999985
Q ss_pred CHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFV 248 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l 248 (289)
++|++++++++|++++
T Consensus 400 ~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 400 KDENLQKAAEILRKWK 415 (418)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999999876
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-36 Score=272.66 Aligned_cols=235 Identities=20% Similarity=0.352 Sum_probs=192.2
Q ss_pred HhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 5 AQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 5 ~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
.....+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++....++.++.. ..+++
T Consensus 165 ~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~--------~~~~~ 236 (418)
T d1w7la_ 165 AGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG--------MWERT 236 (418)
T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT--------TGGGE
T ss_pred hccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccc--------ccccc
Confidence 3455578899999999999999999999999999999999999999999999998877777776632 45789
Q ss_pred EEEecCccccCCCCceEEEEEecCHHHHHHHHhcc--ccCCCChHHHHHHHHHhCCchH----HHHHHHHHHHHHHHHHH
Q 044773 85 HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS--SFGLVSSQTQYLLSALLSDKKF----AQNYISENKKRLKQRHR 158 (289)
Q Consensus 85 i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~ 158 (289)
+++.|+||.+++||+|+||++++++. ...+.... ....++++.|.++..++..... ..++....++.++++++
T Consensus 237 i~~~S~SK~~~~pG~RvG~~v~~~~~-~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 315 (418)
T d1w7la_ 237 LTIGSAGKTFSATGWKVGWVLGPDHI-MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRD 315 (418)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHHH-HHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHH
T ss_pred ceecccCccccCCCCcccccccchhh-hhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhh
Confidence 99999999999999999999996554 44443332 2344778888888888765332 14667888999999999
Q ss_pred HHHHHHHhcCCceecCCceEEEEEecCccccC-------CChhhHHHHHHHHHHhcCeEEeCCCCCCC-----CCCCeEE
Q 044773 159 KLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS-------NTFEAEMELWKKIVYDVKLNISPGSSCHC-----TEPGWFR 226 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~~~R 226 (289)
.+.+.|++.|+++..|+||+|+|+++++.... ....+..+++..|++++||.+.||+.|+. ..+++||
T Consensus 316 ~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iR 395 (418)
T d1w7la_ 316 HMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR 395 (418)
T ss_dssp HHHHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred hhhhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEE
Confidence 99999999999999999999999998753221 11133457899999999999999999975 2468999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHH
Q 044773 227 VCFANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 227 is~~~~~~e~l~~~l~~l~~~l~ 249 (289)
||++. +++++++++++|+++..
T Consensus 396 is~~~-~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 396 FCFVK-DEATLQAMDEKLRKWKV 417 (418)
T ss_dssp EECCC-CHHHHHHHHHHHHHHHC
T ss_pred EEEcC-CHHHHHHHHHHHHHHhc
Confidence 99985 89999999999988753
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=5.4e-35 Score=264.67 Aligned_cols=232 Identities=22% Similarity=0.352 Sum_probs=182.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....+........ +...++++++
T Consensus 172 ~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 246 (412)
T d1bw0a_ 172 DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-----ETTVPRVILG 246 (412)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-----CCSCCEEEEE
T ss_pred hccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccc-----cccccccccc
Confidence 45789999999999999999999999999999999999999999999988776544433332221 3456788999
Q ss_pred cCccccCCCCceEEEEEecCHH-----HHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDT-----VVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~-----~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
|+||.++++|+|+||+++++.. +......... ....+++.|..+...+.... ++++.+.++.++++++.+.+
T Consensus 247 s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~~~ 324 (412)
T d1bw0a_ 247 GTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMYLYN 324 (412)
T ss_dssp ESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--ccccccccchhHHHHHHHHH
Confidence 9999999999999999986532 2222222222 23244555555555544322 67889999999999999999
Q ss_pred HHHhc-CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKA-GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~-g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.|.+. |+.+..|+||+|+|++++..... ...+..+++..|++++||.+.||+.|+. ++|+||+++. +++++++++
T Consensus 325 ~l~~~~g~~~~~p~gg~~l~~~~~~~~~~-~~~~~~~~~~~ll~~~gV~v~PG~~Fg~--~g~iRis~~~-~~e~l~eal 400 (412)
T d1bw0a_ 325 HIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAV 400 (412)
T ss_dssp HHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHH
T ss_pred HHHHhcCceecCCCCceEEEEeCChhhcC-CCCCHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEcC-CHHHHHHHH
Confidence 99876 89999999999999998743221 1234467999999999999999999985 6799999984 899999999
Q ss_pred HHHHHHHHHH
Q 044773 242 QRLKAFVDSI 251 (289)
Q Consensus 242 ~~l~~~l~~~ 251 (289)
+||++++++.
T Consensus 401 ~Rl~~~l~~~ 410 (412)
T d1bw0a_ 401 ERIKAFCQRH 410 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.2e-35 Score=262.07 Aligned_cols=215 Identities=26% Similarity=0.463 Sum_probs=175.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.++... ....... +..+++++++
T Consensus 159 ~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~--------~~~~~~i~~~ 229 (375)
T d1o4sa_ 159 VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEF-TSILDVS--------EGFDRIVYIN 229 (375)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCC-CCHHHHC--------SSSTTEEEEE
T ss_pred ccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccc-ccccccc--------CCCCCEEEEe
Confidence 357899999999999999999999999999999999999999999987665444 3333332 4678999999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
||||.++++|+|+||+++++..+......... ....+...+......+... ....++.++++++.+.+.|++.
T Consensus 230 S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~ 303 (375)
T d1o4sa_ 230 GFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKM 303 (375)
T ss_dssp ESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred echhhccCCccccccccccccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999976655444433322 2335556666666666543 3455677899999999999999
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
|+++..|++|+|+|++++.. ..+++..+++++||.+.||..|+. ++|+||+++. +++++++++++|+++
T Consensus 304 g~~~~~p~gg~f~~~~~~~~--------~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~~-~~e~l~~al~rl~~~ 372 (375)
T d1o4sa_ 304 GVKFVEPEGAFYLFFKVRGD--------DVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDF 372 (375)
T ss_dssp TCCCCCCSBSSEEEEECSSC--------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CceEecCCccEEEEEECCCC--------HHHHHHHHHHhCCEEEEEccccCC--CCeEEEEEcC-CHHHHHHHHHHHHHH
Confidence 99999999999999998752 246888889899999999999974 6799999984 899999999999998
Q ss_pred HH
Q 044773 248 VD 249 (289)
Q Consensus 248 l~ 249 (289)
++
T Consensus 373 l~ 374 (375)
T d1o4sa_ 373 LN 374 (375)
T ss_dssp HT
T ss_pred hc
Confidence 75
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-35 Score=260.87 Aligned_cols=223 Identities=17% Similarity=0.244 Sum_probs=178.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....++... ..++++++.|
T Consensus 132 ~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~----------~~~~~v~~~s 201 (361)
T d1d2fa_ 132 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV----------ARGDWALLTS 201 (361)
T ss_dssp TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT----------CCSSEEEEEC
T ss_pred CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc----------cccccccccc
Confidence 589999999999999999999999999999999999999999999988876666665554 3478899999
Q ss_pred CccccCCCCceEEEEEecCHHHHHH-HHhccccCC---CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAA-ATKMSSFGL---VSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~-~~~~~~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+||.++++|+|+||+++++...... ......... ++...+.+....+.. ...+.++.+..++++++.+.+.+.
T Consensus 202 ~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~ 278 (361)
T d1d2fa_ 202 GSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMN 278 (361)
T ss_dssp SHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhh
Confidence 9999999999999998876554333 333322222 222333332223322 266788888999999999988887
Q ss_pred hc--CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 044773 166 KA--GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQR 243 (289)
Q Consensus 166 ~~--g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~ 243 (289)
+. ++.+.+|++|+|+|++++... .+..+++..|++++||.+.||+.|+..+++++|||++. +++++++++++
T Consensus 279 ~~~~~~~~~~p~gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~r 352 (361)
T d1d2fa_ 279 AAFPELNWQIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAG 352 (361)
T ss_dssp HHCSSCCCCCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHH
T ss_pred hhcccccccccCceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHH
Confidence 65 788899999999999986432 12367999999999999999999998888999999984 89999999999
Q ss_pred HHHHHHHH
Q 044773 244 LKAFVDSI 251 (289)
Q Consensus 244 l~~~l~~~ 251 (289)
|++++++.
T Consensus 353 l~~~l~~l 360 (361)
T d1d2fa_ 353 LINAIRAV 360 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=2.8e-34 Score=259.09 Aligned_cols=227 Identities=19% Similarity=0.264 Sum_probs=188.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+...++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++....++... +..+++++++
T Consensus 169 ~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~---------~~~~~~i~~~ 239 (403)
T d1wsta1 169 KRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHF---------DDYGRVIYLG 239 (403)
T ss_dssp CCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGG---------CSSSCEEEEE
T ss_pred ccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCccccc---------CCCCcEEEEc
Confidence 3456677889999999999999999999999999999999999999998887776666554 4568999999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc-ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|+||.++ +|+|+||++++++.+........ .....+...|.+.+.++..... +.++++.++.++++++.+.+.|.+.
T Consensus 240 S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~ 317 (403)
T d1wsta1 240 TFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEFYKPRRDAMLEALEEY 317 (403)
T ss_dssp ESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999996 99999999996555444333322 2344777888888888888776 8889999999999999999999886
Q ss_pred ---CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHH
Q 044773 168 ---GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQ 242 (289)
Q Consensus 168 ---g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~ 242 (289)
++.+..|+||+|+|+++++..+. ..+++.|+ ++||.+.||+.|+. .+++++||+++..++++++++++
T Consensus 318 ~~~~~~~~~p~gg~~~~~~~~~~~~~------~~~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~ 390 (403)
T d1wsta1 318 MPEGVEWTKPEGGMFVRVTLPEGIDT------KLMMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVR 390 (403)
T ss_dssp CCTTCEECCCSBSSEEEEECCTTCCT------TTTHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHH
T ss_pred ccCCeEEeCCCceeEEEEECCCCCCH------HHHHHHHH-HCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHH
Confidence 68889999999999999986554 23555555 67999999999976 34689999998678999999999
Q ss_pred HHHHHHHHHHH
Q 044773 243 RLKAFVDSITT 253 (289)
Q Consensus 243 ~l~~~l~~~~~ 253 (289)
+|++++++..+
T Consensus 391 rl~~~l~~~~k 401 (403)
T d1wsta1 391 RLAETIKEEMK 401 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999997654
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-34 Score=261.25 Aligned_cols=224 Identities=20% Similarity=0.312 Sum_probs=183.9
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCc
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
..+++++|||||||.+++.+++++|+++|+++++++|+||+|.++.|++....+.... +..+++++++|+|
T Consensus 184 ~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~---------~~~~~~i~~~s~s 254 (420)
T d1vp4a_ 184 KFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI---------GGPERVVLLNTFS 254 (420)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH---------HCTTTEEEEEEST
T ss_pred ceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccc---------ccccceeEEeccc
Confidence 3455788999999999999999999999999999999999999998887766665554 2558889999999
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHhcccc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATKMSSF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA--- 167 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 167 (289)
|.++ +|+|+||++++++.+....+..... ...+.+.|.+++.++....+ .+++++.++.++++++.+.+.|.+.
T Consensus 255 k~~~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 332 (420)
T d1vp4a_ 255 KVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSD 332 (420)
T ss_dssp TTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cccc-cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccchhhhhhhhcc
Confidence 9886 9999999999655444333333222 34677999999999887776 7888888899999999999998775
Q ss_pred --CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC--CCeEEEEEecCCHHHHHHHHHH
Q 044773 168 --GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--PGWFRVCFANMSEDTLKLSMQR 243 (289)
Q Consensus 168 --g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~~Ris~~~~~~e~l~~~l~~ 243 (289)
|+++.+|+||+|+|+++++..+. .++++.| +++||.+.||+.|+..+ .+++|||++..+++++++++++
T Consensus 333 ~~g~~~~~p~gg~f~~~~~~~~~d~------~~~~~~l-~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~r 405 (420)
T d1vp4a_ 333 IPGVKWVKSEGGLFIWLTLPEGFDT------WEMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKR 405 (420)
T ss_dssp STTCEECCCSBSSEEEEECCTTCCT------TTTHHHH-HHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHH
T ss_pred CCCcEEecCCceEEEEEECCCCCCH------HHHHHHH-HHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHH
Confidence 78899999999999999876554 2345544 57799999999998643 5799999986789999999999
Q ss_pred HHHHHHHHHH
Q 044773 244 LKAFVDSITT 253 (289)
Q Consensus 244 l~~~l~~~~~ 253 (289)
|+++++++.+
T Consensus 406 L~~~l~~~~~ 415 (420)
T d1vp4a_ 406 LREVVLEYGK 415 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhH
Confidence 9999999877
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.5e-33 Score=250.25 Aligned_cols=214 Identities=17% Similarity=0.263 Sum_probs=177.0
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+....... .. +..++++++
T Consensus 141 ~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~---~~--------~~~~~~i~~ 209 (355)
T d1lc5a_ 141 LTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP---AL--------KDNPHIWVL 209 (355)
T ss_dssp CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG---GC--------TTCTTEEEE
T ss_pred cccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccc---cc--------cccccceee
Confidence 4468999999999999999999999999999999999999999999987554433221 11 245789999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
.||||.+|++|+|+||++++++.+...+++....+..+.+.+.++..++.+. .+..+.++.++++++++.+.|.++
T Consensus 210 ~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 285 (355)
T d1lc5a_ 210 RSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFYQALCQL 285 (355)
T ss_dssp EESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccceeccchhhhHHHHhhcCCcccccccccccccccccc----chhHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999888777777666655668889999999999874 457778888999999999999988
Q ss_pred -CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 168 -GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 -g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
++.+. |.+|+|+|++++... .+++..|+ ++||.++||..|+..+++|+||+++ +++++++++++|++
T Consensus 286 ~~~~~~-p~~~~f~~~~~~~~~--------~~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~ 353 (355)
T d1lc5a_ 286 PLLTVY-PGRANYLLLRCERED--------IDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRN 353 (355)
T ss_dssp TTEEEC-CCSSSEEEEEESCTT--------CCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHH
T ss_pred CCcEEC-CCCCEEEEEECCCCH--------HHHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHH
Confidence 66654 566789999987532 23677776 6699999999998777899999997 58999999999988
Q ss_pred HH
Q 044773 247 FV 248 (289)
Q Consensus 247 ~l 248 (289)
++
T Consensus 354 il 355 (355)
T d1lc5a_ 354 VL 355 (355)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-33 Score=251.91 Aligned_cols=223 Identities=21% Similarity=0.310 Sum_probs=184.1
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++... +.... ..++++++
T Consensus 156 ~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~-~~~~~----------~~~~~~v~ 224 (389)
T d2gb3a1 156 INERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA-SALSI----------ESDKVVVI 224 (389)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC-CGGGS----------CCTTEEEE
T ss_pred cccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccc-ccccc----------cccccccc
Confidence 34678999999999999999999999999999999999999999999987765433 33222 44788889
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
.|+||.++++|+|+||++++++.+......... ....+++.+.++..++... +.++++.++.++++++.+.+.|++
T Consensus 225 ~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~ 301 (389)
T d2gb3a1 225 DSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEE 301 (389)
T ss_dssp EESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccchhhhhhhhh
Confidence 999999999999999999988777666554433 3445667887877777654 677899999999999999999999
Q ss_pred cCC-ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCeEEEEEecCCHHHH
Q 044773 167 AGI-SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYD-----VKLNISPGSSCHCT---EPGWFRVCFANMSEDTL 237 (289)
Q Consensus 167 ~g~-~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~~---~~~~~Ris~~~~~~e~l 237 (289)
+|+ .+..|++|+|+|++++.. +..+++..|+++ .||.+.||+.|+.. +++++||+++ .+++++
T Consensus 302 ~~~~~~~~p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~-~~~~~l 373 (389)
T d2gb3a1 302 HGLKRFTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLL 373 (389)
T ss_dssp TTCCCBCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHH
T ss_pred hccccccCCCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc-CCHHHH
Confidence 964 567899999999998753 225688888765 47889999988753 3689999998 489999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDSIT 252 (289)
Q Consensus 238 ~~~l~~l~~~l~~~~ 252 (289)
++++++|++++++++
T Consensus 374 ~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 374 SRAIDVLMEGLKMFC 388 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-34 Score=255.26 Aligned_cols=222 Identities=22% Similarity=0.299 Sum_probs=184.1
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++++++|||||||.+++.+++++|+++|.++++.++.|++|....+.+.......... +..++++++.
T Consensus 157 ~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~ 228 (382)
T d1u08a_ 157 SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHP--------QLRERAVAVS 228 (382)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSH--------HHHTTEEEEE
T ss_pred ccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccc--------cccCcEEEEe
Confidence 35789999999999999999999999999999999999999999998766654444433332 2457899999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
|+||.++++|+|+||++++++.+....... ....+.+.+.|.+++.++... +++.+..++.++++++.+.+.+...
T Consensus 229 s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (382)
T d1u08a_ 229 SFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNES 305 (382)
T ss_dssp EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred eccccccCCcccchhhhccchhHHHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHhhhhhhhhhhccC
Confidence 999999999999999999655544433332 223447889999999999865 5678889999999999999999888
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCC--CCCeEEEEEecCCHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCT--EPGWFRVCFANMSEDTLKLSMQRLK 245 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~Ris~~~~~~e~l~~~l~~l~ 245 (289)
|+.+.+|+||+|+|++++.... .+..+++..|++++||.+.||+.|+.. +.+++|||++. ++|+++++++||+
T Consensus 306 g~~~~~p~gg~~~~~~~~~~~~----~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~ 380 (382)
T d1u08a_ 306 RLEILPCEGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 380 (382)
T ss_dssp SCEECCCCBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHT
T ss_pred CcEEecCCceEEEEEecCCCCC----CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHh
Confidence 9999999999999999986432 233578999999999999999999753 45799999985 8999999999997
Q ss_pred H
Q 044773 246 A 246 (289)
Q Consensus 246 ~ 246 (289)
+
T Consensus 381 ~ 381 (382)
T d1u08a_ 381 Q 381 (382)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.4e-33 Score=249.94 Aligned_cols=215 Identities=21% Similarity=0.322 Sum_probs=177.7
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.+++++|+++|+++++++|+||+|..+..... ....... ..++++++.|
T Consensus 151 ~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~ 219 (368)
T d1v2da_ 151 PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER-PRRLREF----------APERTFTVGS 219 (368)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCHHHH----------CTTTEEEEEE
T ss_pred cCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc-ccccccc----------cccccceeec
Confidence 5688999999999999999999999999999999999999999987644333 2332222 3467888999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc-cCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-FGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
+||.++++|+|+||++++++.+......... ...++++.|.+++.++....+ .+++++.++.++++++++.+.|+++|
T Consensus 220 ~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g 298 (368)
T d1v2da_ 220 AGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMG 298 (368)
T ss_dssp HHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhcC
Confidence 9999999999999999977665544433322 344778999999999987776 77899999999999999999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--CCCCeEEEEEecCCHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC--TEPGWFRVCFANMSEDTLKLSMQRLKA 246 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~~Ris~~~~~~e~l~~~l~~l~~ 246 (289)
+++..|++|+|+|++++.. + +.++++++||.+.||+.|+. .+++++||+++. ++|++++++++|++
T Consensus 299 ~~~~~p~g~~~~~~~l~~~-~----------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~ 366 (368)
T d1v2da_ 299 LRVYVPEGTYFLMAELPGW-D----------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGR 366 (368)
T ss_dssp CCEECCSBSSEEEEECTTC-C----------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred cEEecCCceeEEEEeCCcc-H----------HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHH
Confidence 9999999999999998742 1 22356789999999999975 356899999984 89999999999998
Q ss_pred HH
Q 044773 247 FV 248 (289)
Q Consensus 247 ~l 248 (289)
++
T Consensus 367 ~l 368 (368)
T d1v2da_ 367 VV 368 (368)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.97 E-value=3.6e-31 Score=238.61 Aligned_cols=215 Identities=17% Similarity=0.201 Sum_probs=171.2
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
...++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++....+....... +..+++++
T Consensus 171 ~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~------~~~~~~~~ 244 (401)
T d7aata_ 171 KIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI------EQGIDVVL 244 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH------HTTCCCEE
T ss_pred cCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhh------hhhcccce
Confidence 345678999999999999999999999999999999999999999999998875433332211110 14467888
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHH--------hccccCCCChHHHHHHHHHhCCchHH---HHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAAT--------KMSSFGLVSSQTQYLLSALLSDKKFA---QNYISENKKRLKQ 155 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~ 155 (289)
+.|+||.++++|+|+||++++...+..... ....+...+.+.|.+++.++.+..+. .++.++.++.+++
T Consensus 245 ~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (401)
T d7aata_ 245 SQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIIS 324 (401)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997654432211 11234457779999999999987542 4567788899999
Q ss_pred HHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
+++.+.+.|++++ |.+.++++|||+|+.++ .+++++|++++||++.||+ ||+++.
T Consensus 325 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~gV~~~pg~----------Ris~a~ 383 (401)
T d7aata_ 325 MRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKDG----------RISVAG 383 (401)
T ss_dssp HHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC----------EEEGGG
T ss_pred HHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC-----------HHHHHHHHHhCCEEECCCc----------EEEecc
Confidence 9999999999884 56678999999998764 2478889999999999973 999977
Q ss_pred CCHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l 248 (289)
+++++++.+.++|.+++
T Consensus 384 ~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 384 VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78899999998888875
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.97 E-value=5.9e-31 Score=238.05 Aligned_cols=216 Identities=16% Similarity=0.195 Sum_probs=171.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhh--hhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEI--LKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~i~ 86 (289)
.++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++....+.... .... +..+++++
T Consensus 174 ~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 248 (412)
T d1yaaa_ 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL-----STVSPVFV 248 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT-----TTTCCEEE
T ss_pred CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcc-----ccCCCeEE
Confidence 4467788999999999999999999999999999999999999999998876443332111 1100 35588999
Q ss_pred EecCccccCCCCceEEEEEecCHHHH------HHH----H--hccccCCCChHHHHHHHHHhCCchHH---HHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVV------AAA----T--KMSSFGLVSSQTQYLLSALLSDKKFA---QNYISENKK 151 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~------~~~----~--~~~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~~~~~ 151 (289)
+.|+||.++++|+|+||++++++.+. ... . ....+.+++.+.|.++..++.+..+. .++++..++
T Consensus 249 ~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T d1yaaa_ 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99999999999999999999754321 111 1 11234557789999999999986542 566788899
Q ss_pred HHHHHHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEE
Q 044773 152 RLKQRHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRV 227 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ri 227 (289)
.++++++.+.+.|+++| |.+..+++|||+|+.++ .++++.|++++||.+.||+ ||
T Consensus 329 ~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls-----------~e~~~~L~~e~~V~~~~g~----------Ri 387 (412)
T d1yaaa_ 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------PQMVKRLEETHAVYLVASG----------RA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTS----------EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcC-----------HHHHHHHHHhCCEEECCCC----------EE
Confidence 99999999999999885 56778999999998764 2478889999999999863 99
Q ss_pred EEecCCHHHHHHHHHHHHHHHHH
Q 044773 228 CFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 228 s~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+++.+++++++.+.++|+++++.
T Consensus 388 s~~g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 388 SIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHHHHHHHh
Confidence 99767889999999999988775
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.97 E-value=2.3e-30 Score=234.14 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=172.5
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
...++++++++++||||||.+++++++++|+++|++++++||+||+|.++.+++............ +..+.+++
T Consensus 179 ~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~------~~~~~~~~ 252 (412)
T d1ajsa_ 179 NAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFV------SEGFELFC 252 (412)
T ss_dssp HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH------HTTCCEEE
T ss_pred hccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhh------hhcccccc
Confidence 345678899999999999999999999999999999999999999999988876433232221111 25578889
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHH------H--hccccCCCChHHHHHHHHHhCCchH---HHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAA------T--KMSSFGLVSSQTQYLLSALLSDKKF---AQNYISENKKRLKQ 155 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~------~--~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~ 155 (289)
+.|+||.++++|+|+||++++........ . ....+..++...|.++..++.+... +.++++..++.+++
T Consensus 253 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (412)
T d1ajsa_ 253 AQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILS 332 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999765432221 1 1123445677999999988887543 25667888999999
Q ss_pred HHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
+++.+.+.|++++ |.+..+++|||+|+.+.. +++.+|++++||++.||+ ||+++.
T Consensus 333 ~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~-----------~~v~~L~~e~gV~~vpg~----------Ri~~ag 391 (412)
T d1ajsa_ 333 MRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPSG----------RINMCG 391 (412)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTS----------EEEGGG
T ss_pred HHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCH-----------HHHHHHHHhCCEEEeCCC----------eEEecc
Confidence 9999999999884 455678899999976542 467788899999999974 999976
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l~~~ 251 (289)
+++++++.+.++|.+++++.
T Consensus 392 ~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 392 LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CCTTTHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 78899999999999998864
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1e-30 Score=235.16 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=169.7
Q ss_pred hhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 7 KRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 7 ~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
...+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++....+...... +..+++++
T Consensus 168 ~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~-------~~~~~~~~ 240 (396)
T d2q7wa1 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFA-------AMHKELIV 240 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHH-------HHCSCEEE
T ss_pred HhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhh-------hhcccccc
Confidence 34457888899999999999999999999999999999999999999999876544333333333 24577888
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHH--------hccccCCCChHHHHHHHHHhCCchH---HHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAAT--------KMSSFGLVSSQTQYLLSALLSDKKF---AQNYISENKKRLKQ 155 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~--------~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~ 155 (289)
+.|+||.++++|+|+||+++++..+..... ....+.+.+...|.++..++.+... +.+++++.++.+++
T Consensus 241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d2q7wa1 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR 320 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred cccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997655433221 1223444667888888888887542 26778888999999
Q ss_pred HHHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 156 RHRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 156 ~~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
+++.+.+.|+++| |.+..+++|+|.|+.++. +++++|++++||.+.||+ ||+++.
T Consensus 321 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~-----------e~~~~L~~e~gV~~~~g~----------Ri~~a~ 379 (396)
T d2q7wa1 321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVASG----------RVNVAG 379 (396)
T ss_dssp HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGG
T ss_pred HHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCH-----------HHHHHHHHhCCEEECCCC----------EEEecC
Confidence 9999999999985 555678899999987652 468889999999999874 999977
Q ss_pred CCHHHHHHHHHHHHHHH
Q 044773 232 MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 232 ~~~e~l~~~l~~l~~~l 248 (289)
+++++++.+.++|++++
T Consensus 380 l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 380 MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CCTTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 78899999999988763
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-28 Score=218.54 Aligned_cols=214 Identities=17% Similarity=0.240 Sum_probs=162.7
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCC
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
++......++++|+++|||||||.++++++++.+.+.++ ++.++|+||+|.++...... .... +..+
T Consensus 136 ~~l~~~~~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~----~~~~--------~~~~ 202 (354)
T d1fg7a_ 136 QGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASL----AGWL--------AEYP 202 (354)
T ss_dssp HHHHTSCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS----GGGT--------TTCT
T ss_pred hhhhhcccccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhcccccc----chhh--------cccc
Confidence 344445568999999999999999999999999988776 57888888888876433221 1121 2568
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVS 162 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (289)
+++++.||||.||++|+|+||+++++ .+++.+.+....+.++.+.+.++..++.... ..+.....+.+.++++.+.+
T Consensus 203 ~~iv~~S~SK~~~laGlRiGy~i~~~-~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~r~~l~~ 279 (354)
T d1fg7a_ 203 HLAILRTLSKAFALAGLRCGFTLANE-EVINLLMKVIAPYPLSTPVADIAAQALSPQG--IVAMRERVAQIIAEREYLIA 279 (354)
T ss_dssp TEEEEEESSSTTCCGGGCCEEEEECH-HHHHHHHHHSCSSCSCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeCCccccCCCccccccccccc-hhhhhhhhhcCccchhhHHHHHHHHHHhhhc--cccccccchhhhhHHHHHHH
Confidence 88999999999999999999999954 4555555555555578888888777777644 34455666778888899999
Q ss_pred HHHhcC-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHH
Q 044773 163 GLEKAG-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSM 241 (289)
Q Consensus 163 ~l~~~g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l 241 (289)
.+.+.+ +....|++++|+|+++++ ..+++..|+ ++||.++++..|+. .++|+||+++ ++++++.++
T Consensus 280 ~l~~~~~~~~~~p~~~~f~~~~~~~---------~~~~~~~L~-~~gIlvr~~~~~~~-~~~~lRisig--t~ee~~~~l 346 (354)
T d1fg7a_ 280 ALKEIPCVEQVFDSETNYILARFKA---------SSAVFKSLW-DQGIILRDQNKQPS-LSGCLRITVG--TREESQRVI 346 (354)
T ss_dssp HHHHSTTEEEECCCSSSEEEEEETT---------HHHHHHHHH-HTTEECEECTTSTT-CTTEEEEECC--CHHHHHHHH
T ss_pred HHHhCCCcceeCCCCceEEEEeCCC---------HHHHHHHHH-HCCcEEecCCCCCC-CCCEEEEEeC--CHHHHHHHH
Confidence 999885 455667888999999863 135777776 66999999888753 3679999997 578888888
Q ss_pred HHHH
Q 044773 242 QRLK 245 (289)
Q Consensus 242 ~~l~ 245 (289)
++|+
T Consensus 347 ~aLk 350 (354)
T d1fg7a_ 347 DALR 350 (354)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8776
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.8e-31 Score=236.91 Aligned_cols=213 Identities=15% Similarity=0.211 Sum_probs=166.7
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++....+...... +..++++++
T Consensus 170 ~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~-------~~~~~~i~~ 242 (397)
T d3tata_ 170 LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA-------SAGLPALVS 242 (397)
T ss_dssp CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHH-------TTTCCCEEC
T ss_pred cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhh-------hcCCceEEE
Confidence 3457888999999999999999999999999999999999999999998776443333333322 245788999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHH------HHH--hccccCCCChHHHHHHHHHhCCchHH---HHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVA------AAT--KMSSFGLVSSQTQYLLSALLSDKKFA---QNYISENKKRLKQR 156 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~------~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 156 (289)
.|+||.++++|+|+||+++++..+.. ... ......+++...|.++..++.+..+. .++.+..++.++++
T Consensus 243 ~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (397)
T d3tata_ 243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAM 322 (397)
T ss_dssp BCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543321 111 12233446678999999988876542 44566677888888
Q ss_pred HHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 157 HRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 157 ~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
++.+.+.|...+ |.+.++++|+|+|+.++. ++++.|++++||.+.||+ ||+++.+
T Consensus 323 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~~V~l~~g~----------Ri~~a~~ 381 (397)
T d3tata_ 323 RQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGL 381 (397)
T ss_dssp HHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCH-----------HHHHHHTTTTCEECCSSS----------CCBTTSC
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCceEEecCcCH-----------HHHHHHHHhCCEEeCCCC----------EEEeccC
Confidence 888888887763 677789999999987752 467889999999999974 9999767
Q ss_pred CHHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAFV 248 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~l 248 (289)
++++++.+.++|++++
T Consensus 382 ~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 382 NTANVQRVAKAFAAVM 397 (397)
T ss_dssp CTTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8999999999887753
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=3.6e-28 Score=213.69 Aligned_cols=198 Identities=18% Similarity=0.255 Sum_probs=156.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++++++|||||||.+++.++++++ .++++++|+||+|.++....... .. ...+++++++|
T Consensus 137 ~~~~~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~~----~~---------~~~~~~i~~~S 199 (334)
T d2f8ja1 137 GEGDVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESYVD----FL---------KKYENLAVIRT 199 (334)
T ss_dssp CTTEEEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCCGG----GG---------GTCSSEEEEEE
T ss_pred ccceEEEecccccccceeecHHHhhcc----ccceeEEeecccchhhccccccc----cc---------ccCceEEEEec
Confidence 468999999999999999997766553 46799999999997653322211 11 24588999999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAGI 169 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 169 (289)
|||+++++|+|+||++++ +.+...+.........|.+.|.++..++.. .++.++.++.++++++++.+.|+++|+
T Consensus 200 ~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~g~ 274 (334)
T d2f8ja1 200 FSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLPFNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREMGY 274 (334)
T ss_dssp STTTSSCTTTCEEEEEEC-HHHHHHHHHHSCTTCSCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred Cccccchhhhhhhhcccc-hHHHHHHHHhhcccccchhhhhhccccccc----ccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999995 556666666666666888999988888876 455778888999999999999999999
Q ss_pred ceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 044773 170 SCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLKLSMQRLKAF 247 (289)
Q Consensus 170 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~l~~~l~~l~~~ 247 (289)
++.+++|+ |+|+.++.. +..++++.|+ ++||.+.++ ++++|||++ +++|+++++++|+++
T Consensus 275 ~~~~~~g~-f~~~~~~~~-------~~~~~~~~L~-~~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 275 RITDSRGN-FVFVFMEKE-------EKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (334)
T ss_dssp EECCCCSS-EEEEECCHH-------HHHHHHHHHH-HTTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHHC
T ss_pred eECCCCce-EEEEECCCC-------CHHHHHHHHH-HCCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhcC
Confidence 99988877 678887752 3356777776 669998753 469999997 477888888888753
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.9e-28 Score=220.03 Aligned_cols=212 Identities=13% Similarity=0.172 Sum_probs=165.2
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++....+...... ....+++++
T Consensus 166 ~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~-------~~~~~~~~~ 238 (394)
T d2ay1a_ 166 AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA-------SRIPEVLIA 238 (394)
T ss_dssp CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH-------HHCSSEEEE
T ss_pred cccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhh-------hhccccccc
Confidence 3456777788899999999999999999999999999999999999999776543333333322 134567889
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHH--------hccccCCCChHHHHHHHHHhCCchH---HHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAAT--------KMSSFGLVSSQTQYLLSALLSDKKF---AQNYISENKKRLKQR 156 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~--------~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 156 (289)
.|+||.++++|+|+||++++...+..... ........+...|..+..++.+..+ +.++++..++.++++
T Consensus 239 ~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 318 (394)
T d2ay1a_ 239 ASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRL 318 (394)
T ss_dssp EECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997654432211 1122344666888888888887643 256677788899999
Q ss_pred HHHHHHHHHhcC----CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecC
Q 044773 157 HRKLVSGLEKAG----ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANM 232 (289)
Q Consensus 157 ~~~l~~~l~~~g----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~ 232 (289)
++.+.+.|++++ |.+..+++|||+|+.++. +++++|++++||.+.||. ||+++.+
T Consensus 319 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------~~~~~L~~~~~V~~~~g~----------Ri~~a~l 377 (394)
T d2ay1a_ 319 REQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGDS----------RINIAGL 377 (394)
T ss_dssp HHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGGC
T ss_pred HHHHHHHHHHhCCCCceeeECCCceeEEecCcCH-----------HHHHHHHHhCCEEecCCC----------EEEecCC
Confidence 999999998873 677789999999987652 467889999999999873 9999777
Q ss_pred CHHHHHHHHHHHHHH
Q 044773 233 SEDTLKLSMQRLKAF 247 (289)
Q Consensus 233 ~~e~l~~~l~~l~~~ 247 (289)
++++++.+.++|.++
T Consensus 378 ~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 378 NDNTIPILARAIIEV 392 (394)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 889998888877664
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.95 E-value=3.6e-28 Score=219.39 Aligned_cols=206 Identities=17% Similarity=0.209 Sum_probs=155.6
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++++++||||||||.+.. +...++.+|.||+|.+..|. ++. +..++++++.
T Consensus 194 ~~~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~-----~~~-----------~~~~~~Ivl~ 247 (425)
T d2hoxa1 194 NPEQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT-----PIK-----------YKADEDILLF 247 (425)
T ss_dssp CGGGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS-----CCC-----------SCBCCSEEEE
T ss_pred CCCceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc-----chh-----------hhcCCeEEEE
Confidence 357899999999999998732 22368999999999753332 211 2457889999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcccc--CCCChHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF--GLVSSQTQYLLSALLSDKKF--------AQNYISENKKRLKQRHR 158 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~ 158 (289)
||||++|++|+|+||++++++.+.+.+.....+ .+++.+.|.++..+++.... ..++.+..++.++++++
T Consensus 248 S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 327 (425)
T d2hoxa1 248 TMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV 327 (425)
T ss_dssp EHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred eCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887776655433 44788999988888864311 13456777889999999
Q ss_pred HHHHHHHhcCCc---------------eecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 044773 159 KLVSGLEKAGIS---------------CLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPG 223 (289)
Q Consensus 159 ~l~~~l~~~g~~---------------~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 223 (289)
++.+.|.+.+.- ...+..+.|+|++...... +++..+++++||.++||+.||. +++
T Consensus 328 ~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~--------~~~~~lL~e~gI~v~pGs~FG~-~~~ 398 (425)
T d2hoxa1 328 NITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEED--------KDCYQTFQNGRINTQNGVGFEA-SSR 398 (425)
T ss_dssp HHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGG--------CSHHHHHHHTTEECEEGGGGTS-CTT
T ss_pred HHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChH--------HHHHHHHHhCCEEEEechhcCC-CCC
Confidence 999999886421 1223334467887764322 2456677899999999999984 568
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 224 WFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 224 ~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
|+||+++. ++|++++++++|++++++
T Consensus 399 yvRisl~~-~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 399 YVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp EEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 99999985 899999999999999863
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=1.5e-21 Score=173.04 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=131.6
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++|+|++++|+||+ +++.+++++|+++|+++|+++|+||+|+...+.........+. +.+++++
T Consensus 131 ~~~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~------------~~di~~~ 196 (366)
T d2aeua1 131 DKDTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL------------GADLVVT 196 (366)
T ss_dssp CTTEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH------------TCSEEEE
T ss_pred CCCceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhc------------CceEEEe
Confidence 4689999999999985 4678899999999999999999999998665543333333232 3458899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhcc-cc-CCCChHHHHHHHHHhCCchH--HHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-SF-GLVSSQTQYLLSALLSDKKF--AQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~~-~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|+||++ +|+|+||++++++.+ +.+.... .+ ...+++.|.++...++.... ++++.+..+.......+.+....
T Consensus 197 S~sK~~--~g~~~G~i~~~~~~i-~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~ 273 (366)
T d2aeua1 197 STDKLM--EGPRGGLLAGKKELV-DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKEL 273 (366)
T ss_dssp ETTSSS--SSCSCEEEEEEHHHH-HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cccccc--cccceeEEEecHHHH-HHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999987 578999999965544 4444332 22 33677888888777763221 12222222221122222233333
Q ss_pred Hhc-C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec
Q 044773 165 EKA-G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 165 ~~~-g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~ 231 (289)
... + .....+.++++++........ ....+..+++..|++++||.+.||..|. .+++++||+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~Ll~~~gV~~ip~~~~p-~~~~~lRis~~~ 341 (366)
T d2aeua1 274 KAIDDNINIVYERTPTGFVIKRVYKDDT-INIKKLIEIGFNLLKNYGIITITVAGMP-GASKSLRIDLTS 341 (366)
T ss_dssp TTTCTTEEEEEEECSSEEEEEEEESSHH-HHHHHHHHHHHHHHHHHCEECSTTSSSC-SSCCSEEEETTS
T ss_pred cccccccCcccccCccchhccCCCccee-ecccCHHHHHHHHHHhCCEEEEECCCCC-CCCCEEEEeccc
Confidence 222 1 223334455667666543211 1123446789999999999999998884 467899999974
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.83 E-value=1.1e-19 Score=161.81 Aligned_cols=213 Identities=12% Similarity=0.045 Sum_probs=149.3
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+.++|++....+..|.+.+ +++|+++|++||+.+++||+|+...+ |.....+.+.... ..+.+++++||
T Consensus 177 ~~~~iv~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~-G~~G~G~~~~~~~-------~~~~di~~gTl 245 (396)
T d2bwna1 177 APKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMY-GPRGAGVAERDGL-------MHRIDIFNGTL 245 (396)
T ss_dssp SCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTS-STTSCCHHHHHTC-------GGGCSEEEEES
T ss_pred CceeEEEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeee-ccccccchhhcCC-------ceeeeeeeecc
Confidence 4457777777889999999 99999999999999999999995544 4544555554331 34567999999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHhcc-c--cCCCChHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATKMS-S--FGLVSSQTQY-LLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-~--~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
||++|..| |++.++ +.+.+.+.... + +....++.+. ++.+.++-.. ....++.+..++.+.+++.+.+.+
T Consensus 246 sKa~g~~G---g~v~~~-~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~--~~~~~~~r~~l~~~~~~~~~~l~~ 319 (396)
T d2bwna1 246 AKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKA 319 (396)
T ss_dssp SSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc---cccchh-HHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999899 998884 55566555432 2 2222223322 2322222111 233466778888999999999999
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-CCCCeEEEEEe-cCCHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-TEPGWFRVCFA-NMSEDTLKLSMQRL 244 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~Ris~~-~~~~e~l~~~l~~l 244 (289)
.|+.+.+..+ ..+.+.+.... ...+++..|++++||.+.+..+... .+...+||++. .+++++++.+++.|
T Consensus 320 ~g~~~~~~~s-pIvpv~ig~~~------~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L 392 (396)
T d2bwna1 320 LGMPIIDHGS-HIVPVVIGDPV------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 392 (396)
T ss_dssp HTCCBCCCSS-SCEEEECCCHH------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred cCCCcCCCCC-CEEEEEeCCHH------HHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHH
Confidence 9988766544 34445555432 2256788888888999987665442 34578999994 48999999999999
Q ss_pred HHH
Q 044773 245 KAF 247 (289)
Q Consensus 245 ~~~ 247 (289)
+++
T Consensus 393 ~~i 395 (396)
T d2bwna1 393 DLL 395 (396)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.3e-18 Score=154.08 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=145.9
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
...+|++.+..+..|...+ |++|.++|++||+++|+||+|+...++. ......+.... ..+.+++++||
T Consensus 177 ~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~-~G~G~~~~~~~-------~~~~dii~~tl 245 (401)
T d1fc4a_ 177 RHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGE-NGRGSHEYCDV-------MGRVDIITGTL 245 (401)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSST-TSCCHHHHTTC-------TTCCSEEEEES
T ss_pred CceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccC-CCCccchhccC-------CCCCeEEEeec
Confidence 3445555555677788888 9999999999999999999999776643 33344444431 34567899999
Q ss_pred ccccC-CCCceEEEEEecCHHHHHHHHhc-ccc--C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLG-LPGFRVGAIYSNDDTVVAAATKM-SSF--G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 91 sK~~g-~~G~r~G~i~~~~~~~~~~~~~~-~~~--~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+|++| .+| |++.+ ++.+++.+... ..+ . ..++....++...++. .....+.+++++++.+++++.+.
T Consensus 246 ~Ka~gg~~G---g~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~~~~l~ 317 (401)
T d1fc4a_ 246 GKALGGASG---GYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMS 317 (401)
T ss_dssp SSTTCSSSC---EEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCc---ccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHHHhhhc
Confidence 99994 346 88888 45666655433 222 1 1333333333333332 23346678899999999999999
Q ss_pred hcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEe-cCCHHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFA-NMSEDTLKLSMQR 243 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~-~~~~e~l~~~l~~ 243 (289)
+.|+.+...++.+. .+.+.+.. ...++...|+ +.||.+.+..+.. +.+...+|+++. .+|+++++.+++.
T Consensus 318 ~~g~~~~~~~~pIv-~v~~~~~~------~a~~~~~~L~-~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~a 389 (401)
T d1fc4a_ 318 AAGFTLAGADHAII-PVMLGDAV------VAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEA 389 (401)
T ss_dssp HTTCCBCCSSSSEE-EEEEECHH------HHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCccCCCCCCEE-EEEECCHH------HHHHHHHHHH-HCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99888776666533 34444322 2245777776 6699987654332 234567999995 4899999999999
Q ss_pred HHHHHHHHH
Q 044773 244 LKAFVDSIT 252 (289)
Q Consensus 244 l~~~l~~~~ 252 (289)
|+++.++..
T Consensus 390 l~ev~~~lg 398 (401)
T d1fc4a_ 390 FTRIGKQLG 398 (401)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999988753
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.2e-18 Score=153.26 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=146.9
Q ss_pred hHHHhhhCC-CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCC
Q 044773 2 YQLAQKRHL-KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEV 80 (289)
Q Consensus 2 l~~~~~~~~-~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 80 (289)
+++.+.+.+ ..++|+++.+.+++|.+.+ +++|+++|++||+++++||+|+...++ .......+...
T Consensus 157 le~~l~~~~~~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G-~~g~G~~~~~~--------- 223 (383)
T d1bs0a_ 157 LARLLASPCPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIG-EQGRGSCWLQK--------- 223 (383)
T ss_dssp HHHHHHSCCSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSS-GGGCCHHHHTT---------
T ss_pred HHHHhcccCCCceEEEecCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecC-CcccchHHHcC---------
Confidence 455565553 4567778888999999999 888999999999999999999966553 44344445433
Q ss_pred CCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-ccc--CC-CChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 81 WNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSF--GL-VSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 81 ~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~--~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
....+.+.|++|++|..| |++.++ ....+.++.. ..+ .. .++....++...++-.. .......+.+++++
T Consensus 224 ~~~~~~~~t~~ka~g~~G---g~v~~~-~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~--~~~~~~~~~~l~~~ 297 (383)
T d1bs0a_ 224 VKPELLVVTFGKGFGVSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAAL 297 (383)
T ss_dssp CCCSEEEEESSSTTSSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred Cccccccccccccccccc---cccccc-hhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH--hhhhHHHHHHHHHH
Confidence 244567889999999888 999995 4555555433 222 22 22232223323332111 22346677788899
Q ss_pred HHHHHHHHHhcCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-CCCCCeEEEEEe-cCCH
Q 044773 157 HRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-CTEPGWFRVCFA-NMSE 234 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~~Ris~~-~~~~ 234 (289)
.+++.+.|.+.|+.+.+.++. ++.+.+.++ ....++.+.|+ ++||.+.+..+.. +.++..+||++. .+++
T Consensus 298 ~~~~~~~l~~~g~~~~~~~s~-Ii~v~~g~~------~~a~~~~~~L~-~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~ 369 (383)
T d1bs0a_ 298 ITRFRAGVQDLPFTLADSCSA-IQPLIVGDN------SRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAAHEM 369 (383)
T ss_dssp HHHHHHHHTTSSCEECSCCSS-BCCEEEESH------HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEECCBCCTTCCH
T ss_pred HHHHHHHHHhcCCccCCCCCC-EEEEEECCH------HHHHHHHHHHH-HCCceEEEEcCCCCCCCCceEEEEeCCCCCH
Confidence 999999999989877665553 333334332 22346777777 6699998755433 234567999995 4899
Q ss_pred HHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAF 247 (289)
Q Consensus 235 e~l~~~l~~l~~~ 247 (289)
|+++.+++.|..+
T Consensus 370 edid~l~~~L~~~ 382 (383)
T d1bs0a_ 370 QDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.69 E-value=1.5e-16 Score=140.89 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=134.6
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc----CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK----NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~----~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
+++++++++++|+||||.+.+ +++|.++|+++ ++++++|.+|+. +..+..+. ..+.+
T Consensus 143 ~~~t~~v~i~~~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~----g~~~~~~~------------~~~~D 203 (381)
T d1elua_ 143 GPKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDFS------------RLEVD 203 (381)
T ss_dssp CTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCTT------------TSCCS
T ss_pred cccccccccccccccccccch---hhHHHHHHhhccccccccccccccccc----cccccccc------------ccccc
Confidence 468999999999999999999 77888888874 699999999973 22223322 23566
Q ss_pred EEEecCccccCCCCceEEEEEecCHHHHHHHHh-----------------------ccccCCCChHHHHHHHHHhCCchH
Q 044773 85 HIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK-----------------------MSSFGLVSSQTQYLLSALLSDKKF 141 (289)
Q Consensus 85 i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~~~ 141 (289)
+++.|++|.++ ...++|++..++......... ....++.+.....++.++++....
T Consensus 204 ~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~ 282 (381)
T d1elua_ 204 YYAFTGHKWFA-GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR 282 (381)
T ss_dssp EEEEESSSTTC-CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc-ccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHH
Confidence 89999999997 334578888865443321100 001123444555555555553321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec---CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 142 AQNYISENKKRLKQRHRKLVSGLEKA-GISCLK---SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
....+...++.+++++++.+.|+++ |+++.. +.+++ +++.+...... ..+.. .++++||.+...
T Consensus 283 -~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-vsf~~~~~~~~------~~i~~-~L~~~gi~v~~~--- 350 (381)
T d1elua_ 283 -QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGL-VSFTVDSPLGH------RAIVQ-KLEEQRIYLRTI--- 350 (381)
T ss_dssp -HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSE-EEEEECSSSCH------HHHHH-HHHHTTEECEEE---
T ss_pred -hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccE-EEEEcCCCCCH------HHHHH-HHHhCCcEEEec---
Confidence 1123455577888889999999987 666653 34554 34555433221 33555 456789987642
Q ss_pred CCCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 218 HCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 218 ~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
..++++|||++. ++.+|++.++++|+++
T Consensus 351 --~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 351 --ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp --TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred --CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 235799999964 6899999999999764
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=5.7e-16 Score=135.83 Aligned_cols=212 Identities=16% Similarity=0.192 Sum_probs=125.1
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++++|++++|+||||.+.+ +++|+++|+++|+++++|++|+. +....+..++ +.+++++|
T Consensus 139 ~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~----g~~~~~~~~~------------g~D~~~~S 199 (364)
T d2e7ja1 139 GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAI----GRMPVSLKEI------------GADFIVGS 199 (364)
T ss_dssp SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTB----TTBCCCHHHH------------TCSEEEEE
T ss_pred CCceEEEeecCCCCCceeec---chhheeccccccchhhccccchh----hhhhhccccc------------ccceeeec
Confidence 45778999999999999998 89999999999999999999973 2223344444 44588999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccc-------cC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSS-------FG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~-------~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
++|.+|.+| ++||++++++.+......... +. ..+......+...+.. ..++++...+.+ ++.+++
T Consensus 200 ~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~-~~~~~~ 274 (364)
T d2e7ja1 200 GHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRERIKRWDEEV-EKARRF 274 (364)
T ss_dssp HHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHHHGGGHHHHH-HHHHHH
T ss_pred cccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHH
Confidence 999998665 799999976543322221111 11 1122233333333321 122333333333 455678
Q ss_pred HHHHHhcCCceecC--CceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEecCCHHH
Q 044773 161 VSGLEKAGISCLKS--NAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDT 236 (289)
Q Consensus 161 ~~~l~~~g~~~~~~--~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~~~~e~ 236 (289)
.+.+.+.|+.+... ......+...+.... ...... ..+....+...++.... .+ ....+|++...+++++
T Consensus 275 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~---~g--~~~~~~~~~~~~t~ed 348 (364)
T d2e7ja1 275 AAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGG-RFFLYRELKSRKIHGIK---PG--LTRYFKLSTYGLSDEE 348 (364)
T ss_dssp HHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSG-GGHHHHHHHHTTEECSC---TT--CCSEEEEECTTCCHHH
T ss_pred HHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhcc-chHHHHHHHhcCCceec---CC--CcceEEEeccCCCHHH
Confidence 88888887766432 222223333321100 000000 01223334456765331 11 1346777764368999
Q ss_pred HHHHHHHHHHHHHHH
Q 044773 237 LKLSMQRLKAFVDSI 251 (289)
Q Consensus 237 l~~~l~~l~~~l~~~ 251 (289)
++.++++|+++++++
T Consensus 349 id~~~~~l~ei~~~y 363 (364)
T d2e7ja1 349 VDYVLNAFKEIIEKY 363 (364)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.6e-15 Score=132.51 Aligned_cols=211 Identities=15% Similarity=0.158 Sum_probs=145.2
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++++++++..+|.||.+.+ +++|.++|+++|+++++|.+++. |....++.++ +.++++
T Consensus 160 i~~~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~----g~~~id~~~~------------~~D~~~ 220 (405)
T d1jf9a_ 160 FDEKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV----MHHPVDVQAL------------DCDFYV 220 (405)
T ss_dssp CCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHH------------TCSEEE
T ss_pred ccCCcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec----cccccchhhc------------CCceee
Confidence 3578999999999999999999 99999999999999999999984 4444555555 556999
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHh------------------------ccccCCCChHHHHHHHHHhCCchHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATK------------------------MSSFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~------------------------~~~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
.|++|.+|.+| +|++..+++.+.. ..- .-..++.+.....++..+++-.. +
T Consensus 221 ~s~hK~~Gp~G--~g~l~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~ 295 (405)
T d1jf9a_ 221 FSGHKLYGPTG--IGILYVKEALLQE-MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS--A 295 (405)
T ss_dssp EEGGGTTSCSS--CEEEEECHHHHTT-CCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--H
T ss_pred ccccccccCCC--ceeeeechhhhcc-cCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHH--H
Confidence 99999988666 7888885443322 110 00113345566666666665321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CceecCC--ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAG-ISCLKSN--AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC- 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~- 219 (289)
.-++...++.....+++.+.++..+ .....+. ++ .+.+.++... ..++.. .++++||.+..|..|..
T Consensus 296 ~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~-ivsf~~~~~~-------~~~~~~-~L~~~gI~v~~G~~c~~~ 366 (405)
T d1jf9a_ 296 LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKHH-------AYDVGS-FLDNYGIAVRTGHHCAMP 366 (405)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS-EEEEEETTCC-------HHHHHH-HHHHTTEECEEECTTCHH
T ss_pred hChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCc-EEEEEcCCCC-------HHHHHH-HHHHCCcEEEccchhhhh
Confidence 1245666667777777888887763 3333333 34 3335555321 123444 45688999998887642
Q ss_pred -----CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 220 -----TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 -----~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+|||++. ++.+|++.+++.|+++++.+
T Consensus 367 ~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 367 LMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp HHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 235789999975 79999999999999887753
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.5e-15 Score=134.86 Aligned_cols=213 Identities=14% Similarity=0.178 Sum_probs=133.0
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++|++++|+||||.+++ +++|.++|+++|+++++|.+|+. +....++..+ +.++++.
T Consensus 141 ~~~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~----g~~~~d~~~~------------~~D~~~~ 201 (391)
T d1p3wa_ 141 RDDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSV----GKLPIDLSQL------------KVDLMSF 201 (391)
T ss_dssp CTTEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTB----TTBCCCTTTS------------CCSEEEE
T ss_pred CCCcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeecccc----CCccccchhc------------ccccccc
Confidence 468999999999999999999 88999999999999999999974 3333333222 4558889
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHH--------hccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAAT--------KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
|.+|.+|.+| +|++.++++.+..... .....+..+.....++...+... .....+..+++++..+++
T Consensus 202 s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l 276 (391)
T d1p3wa_ 202 SGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA---KEEMATEMERLRGLRNRL 276 (391)
T ss_dssp ESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHH---HHHhhHHHHHHHHHHHHH
Confidence 9999998666 5777775543221111 01112223334444444444322 334455566777778888
Q ss_pred HHHHHhcCCcee---cCC-ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC---------------
Q 044773 161 VSGLEKAGISCL---KSN-AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE--------------- 221 (289)
Q Consensus 161 ~~~l~~~g~~~~---~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--------------- 221 (289)
.+.|.+.+.... .+. ......+.++... ...+...+ .++.++.|..|....
T Consensus 277 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~ 346 (391)
T d1p3wa_ 277 WNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE-------GESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDE 346 (391)
T ss_dssp HHTTTTSTTEEECSCTTTSCTTEEEEEETTSC-------HHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHH
T ss_pred HHHHHhhcCeeecccccccCceEEEEEeCCCC-------hHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCcc
Confidence 888877632221 111 1122223333211 12344333 478887776553211
Q ss_pred --CCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHHhh
Q 044773 222 --PGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITTTL 255 (289)
Q Consensus 222 --~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~~~ 255 (289)
.+.+|||++. +|++|++.+++.|++++++.....
T Consensus 347 ~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~ 383 (391)
T d1p3wa_ 347 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLS 383 (391)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 2579999965 799999999999999999876643
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.2e-15 Score=132.07 Aligned_cols=220 Identities=14% Similarity=0.118 Sum_probs=136.1
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++.+ ++..| +.-.|. ..+++.++.|.++|+++|+++|+||++++++..|..+.. +.. +....+.
T Consensus 198 ~vaa-vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~--~~~-----------gv~PDi~ 263 (425)
T d1sffa_ 198 DIAA-IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM--EQM-----------GVAPDLT 263 (425)
T ss_dssp GEEE-EEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG--GGT-----------TSCCSEE
T ss_pred ceEE-EEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHH--Hhc-----------CCCccce
Confidence 3444 55566 444554 568899999999999999999999999987666554321 111 2223366
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|+++|.+++++ .+.+.+... .+.+..|+++..++.+.|+...- .+..+...+.-+...+.+.+.+++
T Consensus 264 ~~gK~l~-gG~P~~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~ 340 (425)
T d1sffa_ 264 TFAKSIA-GGFPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEK 340 (425)
T ss_dssp EECGGGG-TSSCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecccccC-CCcceEEEEEcH-HHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhhhhhHhh
Confidence 7999998 789999999954 444433322 22344788888887777764321 122233223333333334444444
Q ss_pred cCCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
.++......-|....+.+..... .....-...+...++ +.||.+.++... ...+|++++. ++++++++++++
T Consensus 341 ~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~g~~----~n~i~~~PpL~it~~eid~~l~~ 415 (425)
T d1sffa_ 341 HPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEI 415 (425)
T ss_dssp CTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT----SCEEEECCCTTCCHHHHHHHHHH
T ss_pred CCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHH-HCCCEEeccCCC----CCEEEEECCCCCCHHHHHHHHHH
Confidence 44422222223444455543211 111122245666666 669998876433 3479999864 799999999999
Q ss_pred HHHHHHHHH
Q 044773 244 LKAFVDSIT 252 (289)
Q Consensus 244 l~~~l~~~~ 252 (289)
+.+++++..
T Consensus 416 l~~al~eik 424 (425)
T d1sffa_ 416 ISQCFDEAK 424 (425)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998864
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.61 E-value=4.6e-14 Score=126.02 Aligned_cols=211 Identities=17% Similarity=0.161 Sum_probs=145.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++|.++..+|-||..++ +++|.++|+++|+++++|-+++. |..+.++.++ +.++++.
T Consensus 161 ~~~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~----g~~~id~~~~------------~~D~~~~ 221 (408)
T d1t3ia_ 161 SEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA----PHYPLDVQLI------------DCDWLVA 221 (408)
T ss_dssp CTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHH------------TCSEEEE
T ss_pred CCCceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceec----cccccccccc------------CCceEEe
Confidence 468999999999999999999 88899999999999999999984 4545565555 5569999
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc-----------------------cccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----------------------SSFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
|.+|.+|.+| +|++..+++.+ ....-. -..++.+.....++..+++... +--
T Consensus 222 s~hK~~gp~G--~g~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~--~~g 296 (408)
T d1t3ia_ 222 SGHKMCAPTG--IGFLYGKEEIL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--DLG 296 (408)
T ss_dssp EGGGTTSCTT--CEEEEECHHHH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHC
T ss_pred ccccccCCCC--ccccccchhhh-hcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHH--HcC
Confidence 9999877555 78999865443 221100 0123345566666666665321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC 219 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 219 (289)
+++..++..+..+++.+.+.+. ++.+..+. .+..+.+.++.. + ..++...| .++||.+..|..|..
T Consensus 297 ~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~-~------~~~v~~~L-~~~gI~v~~G~~c~~ 368 (408)
T d1t3ia_ 297 MENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-H------ASDVATMV-DQDGIAIRSGHHCTQ 368 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-C------HHHHHHHH-HTTTEECBCSCTTCH
T ss_pred HHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC-C------HHHHHHHH-hhCCcEEecCccccc
Confidence 4566677777888888888877 44444322 122333455432 1 13455544 688999998887642
Q ss_pred ------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Q 044773 220 ------TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ------~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+|||++. ++++|++.+++.|+++++.+
T Consensus 369 ~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 369 PLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp HHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 235789999975 79999999999999988753
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.5e-14 Score=129.07 Aligned_cols=216 Identities=17% Similarity=0.119 Sum_probs=138.6
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+++++.. +++-+|+ ..| ..-.| ...+++.+++|.++|+++|+++|+||++.+++..|..+.. +..
T Consensus 180 l~~~l~~-~~iAavi-iEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~--~~~--------- 246 (404)
T d2byla1 180 LERALQD-PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV--DYE--------- 246 (404)
T ss_dssp HHHHHTS-TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG--GGG---------
T ss_pred HHHhcCC-CCeEEEE-ECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchh--hhc---------
Confidence 4555543 3565655 456 54456 5567889999999999999999999999988666664322 111
Q ss_pred CCCceEEEecCccccCCCC-ceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPG-FRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
+....+.+++|.+| .| +++|.++++ +.+.+.+... .+++..|+++..++.+.|+...- ....++.++.
T Consensus 247 --gv~PDi~~~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-----~~l~~~~~~~ 317 (404)
T d2byla1 247 --NVRPDIVLLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE-----ENLAENADKL 317 (404)
T ss_dssp --TCCCSEEEECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHH
T ss_pred --CCCCCEEEECchhh-CCCccceeeeec-hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh-----cCchhhhhHh
Confidence 11122558999998 55 899999994 5555433322 22334788888887777774321 2234455556
Q ss_pred HHHHHHHHHhcCCcee--cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CC
Q 044773 157 HRKLVSGLEKAGISCL--KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MS 233 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~ 233 (289)
.+++.+.|.++.-+.. ...-|++..+.+.+.... ...++...++ ++||.+.|.. ...+|++++. .+
T Consensus 318 g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~----~~~~~~~~l~-~~Gvl~~~~~------~~~i~l~PpL~it 386 (404)
T d2byla1 318 GIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDW----DAWKVCLRLR-DNGLLAKPTH------GDIIRFAPPLVIK 386 (404)
T ss_dssp HHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSSC----CHHHHHHHHH-HTTEECEEEE------TTEEEECCCTTCC
T ss_pred hHHHHHHHHhhccccceeeeecccEEEEEEecCCch----hHHHHHHHHH-hCCeEEecCC------CCEEEEECCcCCC
Confidence 6667777776521111 111234444555443221 2245777776 6699987631 3579999864 69
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 234 EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 234 ~e~l~~~l~~l~~~l~~ 250 (289)
+++++++++++.+++.+
T Consensus 387 ~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 387 EDELRESIEIINKTILS 403 (404)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998865
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.57 E-value=4e-14 Score=126.26 Aligned_cols=213 Identities=15% Similarity=0.127 Sum_probs=133.6
Q ss_pred CccEEEEeCC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGTT-MSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +...|.. .+++.+++|.++|+++|+++|+||++.+++..|..+.. +.. +...-+.
T Consensus 186 ~iAa-vi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~--e~~-----------gv~PDiv 251 (404)
T d1z7da1 186 NVCA-FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--HHY-----------NVKPDVI 251 (404)
T ss_dssp TEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG--GGG-----------TCCCSEE
T ss_pred CEEE-EEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc--ccc-----------CCCCCEE
Confidence 4555 55566 5556654 56778999999999999999999999987665554321 221 2222355
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+|..+..+|.++++ +.+.+..... .+++..|+++..++.+.|+...- ++..+...+.-....+.+.+.+++
T Consensus 252 t~gK~l~gG~~p~~~v~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 329 (404)
T d1z7da1 252 LLGKALSGGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLGGPFLENLKRELKD 329 (404)
T ss_dssp EECGGGGTTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEcccccCCCCCcccccch-HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhhccchhHHHHHHHHHHhc
Confidence 8999998333899999995 4544443332 22334788888887777764221 222333333333344445555555
Q ss_pred cCCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHH
Q 044773 167 AGISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLK 245 (289)
Q Consensus 167 ~g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~ 245 (289)
.++......-|.+..+.+...... ..++...++ ++||.+.|.. ...+||.++. ++++++++++++|.
T Consensus 330 ~~~v~~vrg~Gl~~~i~~~~~~~~-----~~~~~~~l~-~~Gl~~~~~~------~~~ir~~Ppl~it~~~id~~~~~l~ 397 (404)
T d1z7da1 330 SKIVRDVRGKGLLCAIEFKNELVN-----VLDICLKLK-ENGLITRDVH------DKTIRLTPPLCITKEQLDECTEIIV 397 (404)
T ss_dssp CTTEEEEEEETTEEEEEECTTTCC-----HHHHHHHHH-HTTEECCEET------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeeCcEEEEEEcCCccc-----HHHHHHHHH-hCCeEEecCC------CCEEEEECCcCCCHHHHHHHHHHHH
Confidence 543222222234555666543221 234666666 6699987632 4579999854 69999999999999
Q ss_pred HHHHHH
Q 044773 246 AFVDSI 251 (289)
Q Consensus 246 ~~l~~~ 251 (289)
++++++
T Consensus 398 ~alk~~ 403 (404)
T d1z7da1 398 KTVKFF 403 (404)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999864
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.1e-14 Score=125.95 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=142.9
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+++++++++.+|.||.+.+ +++|.++|+++|+++++|.+++- +....++. ..+.++++.|.
T Consensus 144 ~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~----g~~~~d~~------------~~~~D~~~~s~ 204 (388)
T d1h0ca_ 144 KPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASL----GGTPLYMD------------RQGIDILYSGS 204 (388)
T ss_dssp CCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTT----TTSCCCTT------------TTTCSEEEEES
T ss_pred CcceEEEeeeeeccccccC---HHHHHHHhhcccccceecccccc----cccccccc------------ccccceecccc
Confidence 6899999999999999999 99999999999999999999984 23223332 33666889999
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHh----------------c------ccc--CCCChHHHHHHHHHhCCchHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATK----------------M------SSF--GLVSSQTQYLLSALLSDKKFAQNYI 146 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~----------------~------~~~--~~~~~~~q~~~~~~l~~~~~~~~~~ 146 (289)
.|.++.++ .+|+++.++..+...... + ..+ .+++.....++..++.... +.-+
T Consensus 205 ~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~--~~g~ 281 (388)
T d1h0ca_ 205 QKALNAPP-GTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIA--EQGL 281 (388)
T ss_dssp SSTTCCCT-TCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHH--HHCH
T ss_pred cccccCCC-ceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHH--Hhcc
Confidence 99996343 357777754433322110 0 001 1122233333333332210 2225
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecCCc----eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 147 SENKKRLKQRHRKLVSGLEKAGISCLKSNA----GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 147 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
+...++.++..+++++.+.+.|+....++. ...+.+.+++..+. .++...|++++||.+..|... ...
T Consensus 282 ~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~------~~~~~~L~~~~gI~v~~G~~~--~~~ 353 (388)
T d1h0ca_ 282 ENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDW------RDIVSYVIDHFDIEIMGGLGP--STG 353 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH------HHHHHHHHHHHCEECEECCGG--GTT
T ss_pred ccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCH------HHHHHHHHhcCCEEEeCCchh--hcC
Confidence 666777788888889988887765543322 12344666654332 468888888899999988643 345
Q ss_pred CeEEEE-Eec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVC-FAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris-~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+.|||| ++. ++.++++.++++|++++++..+
T Consensus 354 ~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 354 KVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 689999 554 6899999999999999998765
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=6.7e-14 Score=125.67 Aligned_cols=207 Identities=15% Similarity=0.106 Sum_probs=134.3
Q ss_pred CCccEEEEeCC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 10 LKVKGVLVTNP--SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 10 ~~~~~i~l~~p--~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
.++-+ ++..| ++-.|. ..+++.+++|.++|+++|+++|+||++.+++..|..+.. +. .+....
T Consensus 203 ~~iaa-vivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~--~~-----------~~v~PD 268 (429)
T d1s0aa_ 203 HEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFAC--EH-----------AEIAPD 268 (429)
T ss_dssp TTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG--GG-----------GTCCCS
T ss_pred Cccce-eeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccc--cc-----------ceeccc
Confidence 34555 55556 455554 578999999999999999999999999998666654322 11 122334
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhc-------cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-------SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+.+++|.++..++++|.++++ +.+.+.+... .+.+..|+++..++.+.|+...- .+...+.++..++
T Consensus 269 i~~~gK~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~-----~~~~~~~~~~g~~ 342 (429)
T d1s0aa_ 269 ILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-----GDWQQQVADIEVQ 342 (429)
T ss_dssp EEEECGGGGTSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhH-HHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc-----ccccchhhHHHHH
Confidence 667889998455999999995 4555544321 22334778888877777664321 2234445555556
Q ss_pred HHHHHHhc---C-CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCH
Q 044773 160 LVSGLEKA---G-ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSE 234 (289)
Q Consensus 160 l~~~l~~~---g-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~ 234 (289)
+.+.|+++ . +.-.... |++..+++..+... ..+...++ ++|+.+.|.. ..+|+++.. .++
T Consensus 343 l~~~L~~l~~~~~v~~vrg~-Gl~~~~e~~~~~~~------~~~~~~~~-~~Gl~~~~~g-------~~i~~~Ppl~it~ 407 (429)
T d1s0aa_ 343 LREQLAPARDAEMVADVRVL-GAIGVVETTHPVNM------AALQKFFV-EQGVWIRPFG-------KLIYLMPPYIILP 407 (429)
T ss_dssp HHHHHGGGGGCTTEEEEEEE-TTEEEEEESSCBCH------HHHHHHHH-HTTEECCCBT-------TEEEECCCTTCCH
T ss_pred HHHHHHHhccCCceEEEeec-ccEEEEEecCcccH------HHHHHHHH-HCCcEEEecC-------CEEEEeCCcCCCH
Confidence 66666554 1 1111122 44555666654332 34666666 6699987642 479999854 699
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044773 235 DTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 235 e~l~~~l~~l~~~l~~~ 251 (289)
+++++++++|.+++++.
T Consensus 408 ~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 408 QQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.53 E-value=8.6e-13 Score=115.76 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=98.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++|+|++.+|.||+..+.+ +++|.++|+++|+.+|+|+.+..... -. + . ..+-++++.
T Consensus 131 ~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~-~~---P-l------------~~GaDiVvh 190 (380)
T d1ibja_ 131 GPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL-SR---P-L------------ELGADIVMH 190 (380)
T ss_dssp CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT-CC---G-G------------GTTCSEEEE
T ss_pred ccCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccc-cc---c-c------------ccCCCEEEe
Confidence 468999999999999999999 99999999999999999999974311 11 1 1 225569999
Q ss_pred cCccccC-CCCceEEEEEecCHHHHHHHHhccccC--CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSSFG--LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
|++|.++ .+..=.|.++++++.+.+.+....... ..++.....+.+-++. +..+.++..++...+.+.|+
T Consensus 191 S~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~lRm~~~~~nA~~lA~~L~ 263 (380)
T d1ibja_ 191 SATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-------MALRIEKQQENARKIAMYLS 263 (380)
T ss_dssp ETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh-------hhhhHHHHHHHHHHHHHHHH
Confidence 9999995 334567888887777666555443322 2667777777777776 35556667778888899998
Q ss_pred hc
Q 044773 166 KA 167 (289)
Q Consensus 166 ~~ 167 (289)
++
T Consensus 264 ~h 265 (380)
T d1ibja_ 264 SH 265 (380)
T ss_dssp TC
T ss_pred hC
Confidence 87
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.5e-12 Score=114.21 Aligned_cols=202 Identities=14% Similarity=0.140 Sum_probs=133.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++.+|.||+..+.+ +++|+++|+++|+++|+|+.+....+ .... ..+-++++.|
T Consensus 134 ~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~-----~~Pl------------~~GaDiVvhS 193 (384)
T d1cs1a_ 134 EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPAL-----QNPL------------ALGADLVLHS 193 (384)
T ss_dssp TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT-----CCGG------------GGTCSEEEEE
T ss_pred ccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccc-----cccc------------ccCCCEEEEc
Confidence 57999999999999999999 99999999999999999999964311 1112 2255699999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHHHHhccc-c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAAATKMSS-F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
++|+++ .+..=.|.++++++.+.+.+..... + ...++.....+.+-++. +.-+.++..++...+.+.|++
T Consensus 194 ~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-------L~lRm~~~~~nA~~lA~~L~~ 266 (384)
T d1cs1a_ 194 CTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAIVKYLQT 266 (384)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch-------hHHHHHHHHHHHHHHHHhccc
Confidence 999995 4446678888877776554443322 2 23666776666666665 344556667788888999987
Q ss_pred cC-C-ceecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC--------
Q 044773 167 AG-I-SCLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC-------- 219 (289)
Q Consensus 167 ~g-~-~~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------- 219 (289)
+. + ++..| -||++. +.+... .+-+..+++.-.++.. +..+|.
T Consensus 267 hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~s-f~l~~~---------~~~a~~f~~~L~l~~~-a~SlGg~eSLi~~p 335 (384)
T d1cs1a_ 267 QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLS-FELDGD---------EQTLRRFLGGLSLFTL-AESLGGVESLISHA 335 (384)
T ss_dssp CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEE-EEESSC---------HHHHHHHHHTCSSSEE-BSCCCSSSCEEEEG
T ss_pred CCceeeeeeccccchhHHHHHHhhcCCCcceeE-Eeecch---------HHHHHHHHHhCCccee-ccccCCccceeccc
Confidence 62 2 12222 244443 444421 1223334444444332 222331
Q ss_pred -----------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 044773 220 -----------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 220 -----------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~~ 252 (289)
..++.||||++. |+.+.+++.|.++++...
T Consensus 336 ~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---Ed~eDLi~Dl~~AL~aa~ 382 (384)
T d1cs1a_ 336 ATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAAN 382 (384)
T ss_dssp GGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHT
T ss_pred cccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHHHhc
Confidence 124789999997 777888888888887654
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.3e-13 Score=118.50 Aligned_cols=211 Identities=11% Similarity=0.098 Sum_probs=123.8
Q ss_pred CccEEEEe-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 11 KVKGVLVT-NPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 11 ~~~~i~l~-~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++..++++ .++|+.|.+.+.+++++|.++|+++++++++|++|......... ........ .....+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~-~~~~~~~~----------~~~~~~~~ 196 (343)
T d1m6sa_ 128 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG-VPVKEYAG----------YADSVMFC 196 (343)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC-CCHHHHHH----------TCSEEEEE
T ss_pred cccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccc-cchhhhcc----------cccccccc
Confidence 44555444 45899999999999999999999999999999999865333221 22222211 12233333
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
.+| +..|...|+++...+.+........... ..+.....++........ .....+...++..++.+.+.++
T Consensus 197 ~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T d1m6sa_ 197 LSK--GLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK-----MVDRLKEDHENARFLALKLKEIG 269 (343)
T ss_dssp SSS--TTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH-----SSTTHHHHHHHHHHHHHHHHHHT
T ss_pred ccc--cccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhh-----hHHHHHHHHHHHHHhhhHHHHhc
Confidence 333 3345556888875444433332222222 122222222222211111 1112223344445555556555
Q ss_pred CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 168 GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 168 g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
+.....+..+++++++++.... ...++++.|. ++||.+.|. ++.++||+++. +++|++++++++|++
T Consensus 270 ~~~~~~~~~~~~v~~~~~~~~~-----~a~~l~~~L~-~~Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~ 337 (343)
T d1m6sa_ 270 YSVNPEDVKTNMVILRTDNLKV-----NAHGFIEALR-NSGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEK 337 (343)
T ss_dssp CBCCGGGCCSSEEEEECTTSSS-----CHHHHHHHHH-HHTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCccCCCCCceEEEEEeCCCcc-----cHHHHHHHHH-HCCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333334455678888775321 2246777776 669999874 24689999964 799999999999999
Q ss_pred HHHHH
Q 044773 247 FVDSI 251 (289)
Q Consensus 247 ~l~~~ 251 (289)
+++++
T Consensus 338 v~~~~ 342 (343)
T d1m6sa_ 338 LFRKF 342 (343)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99886
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.51 E-value=1.7e-12 Score=113.33 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=141.2
Q ss_pred hhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceE
Q 044773 6 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVH 85 (289)
Q Consensus 6 ~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i 85 (289)
....++++++.+++.+|-||...+ +++|.++|+++|+++++|.+++. |..+..+. ..+.++
T Consensus 122 ~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~----G~~~~d~~------------~~~~D~ 182 (361)
T d1m32a_ 122 LNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSF----GGIPMDIA------------ALHIDY 182 (361)
T ss_dssp HHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCTT------------TTTCSE
T ss_pred HHhccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeeccccc----Cccccccc------------ccccce
Confidence 345578999999999999999999 99999999999999999999984 33333433 336779
Q ss_pred EEecCccccCCC-CceEEEEEecCHHHHHH-----------------HHh--ccccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 86 IVYSLSKDLGLP-GFRVGAIYSNDDTVVAA-----------------ATK--MSSFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 86 ~i~s~sK~~g~~-G~r~G~i~~~~~~~~~~-----------------~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
++.|..|.++.| | +|+++.+++..... ... .....+.+.....++...+..... +..
T Consensus 183 ~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~-~~~ 259 (361)
T d1m32a_ 183 LISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK-EGG 259 (361)
T ss_dssp EEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH-HTH
T ss_pred EEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH-hcc
Confidence 999999999534 6 78888754332210 111 111223444555555555543221 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAGISCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
.....++.+...+.+.+.++..|+....++ +.....+.+++.... +..++...| .+.||.+.+|... .+
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~----~~~~~~~~l-~~~gi~i~~G~~~---~~ 331 (361)
T d1m32a_ 260 VAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY----RFSEFYRRL-KEQGFVIYPGKVS---QS 331 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC----CHHHHHHHH-HHTTEECEECCCS---SS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCC----CHHHHHHHH-HHCCcEEECCCcC---CC
Confidence 445556677777888888888776554332 122334556543221 123466665 4779999887543 35
Q ss_pred CeEEEEE-ecCCHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCF-ANMSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 223 ~~~Ris~-~~~~~e~l~~~l~~l~~~l~ 249 (289)
+.+||++ +.++++|++.++++|+++|.
T Consensus 332 ~~~Ris~~g~~~~~di~~lv~al~~~L~ 359 (361)
T d1m32a_ 332 DCFRIGNIGEVYAADITALLTAIRTAMY 359 (361)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 7899997 45799999999999998763
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=8.5e-13 Score=118.77 Aligned_cols=233 Identities=14% Similarity=0.076 Sum_probs=133.1
Q ss_pred hHHHhhhC--CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRH--LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~--~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
|++++.+. +++.+|++++|+|++|.+-+ +++|.++|+++|+++++|++|+........ ...... +
T Consensus 183 l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~---~~~~~~-------~ 249 (445)
T d3bc8a1 183 VEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMH---LIQQGA-------R 249 (445)
T ss_dssp HHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH---HHHHHH-------H
T ss_pred HHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccc---cchhcc-------C
Confidence 45555442 35778899999999999988 999999999999999999999853211111 111111 1
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
..+.+++..|.+|.++.| ...|+++.++....+.+.................+.+...+ ..-..+..+...++.++
T Consensus 250 ~~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~ 325 (445)
T d3bc8a1 250 VGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---CSGYRKLLKERKEMFVY 325 (445)
T ss_dssp HSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh---hhcchhhHHHHHHHHHH
Confidence 123458889999988733 34678888777776665544333322322222222221111 12233333444444455
Q ss_pred HHHHHHh----cCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCC----------CCCC-
Q 044773 160 LVSGLEK----AGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGS----------SCHC- 219 (289)
Q Consensus 160 l~~~l~~----~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~----------~f~~- 219 (289)
+.+.|.+ .|..+.. +......++.+....... ..+..++...|. +.||... ++. .|+.
T Consensus 326 ~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~L~-~~gI~~~~~~~~~~~~~i~~~~~~~~g~~ 403 (445)
T d3bc8a1 326 LSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHH-DKAVTQLGSMLF-TRQVSGARAVPLGNVQTVSGHTFRGFMSH 403 (445)
T ss_dssp HHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSS-SCHHHHHHHHHH-HTTCCSCEEECSCCEEEETTEEEETTTTT
T ss_pred HHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccC-CCCHHHHHHHHH-HcCCCcceeeccccccchhhhhhhhcCCC
Confidence 5555543 3544433 333334444443322111 123334555554 5576311 111 1111
Q ss_pred ---CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 ---TEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ---~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
....++|++++. ++++|+|.++++|.+++++..+
T Consensus 404 ~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 404 ADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp SSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 223569999864 7999999999999999999876
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.49 E-value=3.1e-13 Score=121.45 Aligned_cols=222 Identities=15% Similarity=0.139 Sum_probs=130.5
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|. ..+++.+++|.++|++||+++|.||++.+++..|..+.. +.. +...-+.
T Consensus 201 ~iAa-vi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~--~~~-----------gv~PDi~ 266 (431)
T d1zoda1 201 NLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC--QRD-----------GVTPDIL 266 (431)
T ss_dssp CEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH--HHH-----------TCCCSEE
T ss_pred cccc-eeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccccc--ccC-----------CCCcchh
Confidence 3444 66667 333444 568899999999999999999999999987676665422 221 2223366
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc---cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM---SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
+++|.+| .|+.++.+++.++......... .+++..++++..++.+.+..... +...+...+.-+...+.+.+.+.
T Consensus 267 ~~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~l~~~~~ 344 (431)
T d1zoda1 267 TLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGLVARANVMGDRLRRGLLDLME 344 (431)
T ss_dssp EECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhhhh
Confidence 7899998 8899999998544433332221 22334777777777666653222 22233333333333344555555
Q ss_pred hcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 166 KAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 166 ~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
+.++......-|.+..+.+...... ....-..++...++ +.|+...... .....+.+|++++. +++++++++++
T Consensus 345 ~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~-~~Gl~~~~~~--~~~~~~~i~l~Ppl~it~~eid~~~~ 421 (431)
T d1zoda1 345 RFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQ--LPGMGGVFRIAPPLTVSEDEIDLGLS 421 (431)
T ss_dssp HCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEEC--CTTSCCEEEECCCTTCCHHHHHHHHH
T ss_pred cCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHH-HhCcccCeee--ecCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5443322222233433444321111 01111234666666 6688642111 11224579999864 79999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
++.+++++.
T Consensus 422 ~l~~al~~v 430 (431)
T d1zoda1 422 LLGQAIERA 430 (431)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999863
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.48 E-value=6.5e-13 Score=119.24 Aligned_cols=218 Identities=15% Similarity=0.081 Sum_probs=129.9
Q ss_pred hHHHhhhC---CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccC
Q 044773 2 YQLAQKRH---LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENT 78 (289)
Q Consensus 2 l~~~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (289)
|++++.++ .++.+|+.++|++++|.+-+ +++|.++|+++|+++++|++|......... ......
T Consensus 199 l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~---~~~~~~------- 265 (434)
T d2z67a1 199 IENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLE---KLKKAF------- 265 (434)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH---HHHHHH-------
T ss_pred HHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccc---cccccc-------
Confidence 44555432 35678899999999999888 999999999999999999999743110001 111111
Q ss_pred CCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 79 EVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 79 d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
..+.++++.|++|.++ .+...|++..+++...+.+.........+.....+.+.+...+ .+..++..++..++.+
T Consensus 266 -~~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~---~~g~~~~~~~~~~~a~ 340 (434)
T d2z67a1 266 -KYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG---SKNYLELVKNQKNSKK 340 (434)
T ss_dssp -TSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred -cCCcceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH---HhcchhHHHHHHHHHH
Confidence 2245688999999987 4344677888777776666555433323322222222221111 2223444455555556
Q ss_pred HHHHHHHhc----CCceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCC-----CCCCCCeE
Q 044773 159 KLVSGLEKA----GISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSC-----HCTEPGWF 225 (289)
Q Consensus 159 ~l~~~l~~~----g~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f-----~~~~~~~~ 225 (289)
++.+.|+++ |..+..........+.... +..++...|. +.||... +.... +.....++
T Consensus 341 ~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~--------~~~~l~~~L~-~~gI~g~~v~~~l~~~g~~~~~~~~~~~l 411 (434)
T d2z67a1 341 LLDELLNDLSKKTGGKFLDVESPIASCISVNS--------DPVEIAAKLY-NLRVTGPRGIKKTDHFGNCYLGTYTHDYI 411 (434)
T ss_dssp HHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS--------CHHHHHHHHH-HTTEESCEEECTTCHHHHTCSSCCSCCEE
T ss_pred HHHHHHHHhhhhcCceecCCCCCceeeeecCC--------CHHHHHHHHH-HcCCeeeehhhhccccCeeeecccCCCeE
Confidence 666666543 6666554443333333332 1245666665 6688532 12111 11235789
Q ss_pred EEEEec-CCHHHHHHHHHHHHH
Q 044773 226 RVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 226 Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
|++++. +++||+|.++++|++
T Consensus 412 ~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 412 VMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp EEECCTTCCHHHHHHHHHHHHT
T ss_pred EEecCCCCCHHHHHHHHHHHhc
Confidence 999964 799999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.47 E-value=3.3e-13 Score=121.10 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=125.6
Q ss_pred hHHHhhhCCCccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCC
Q 044773 2 YQLAQKRHLKVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTE 79 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d 79 (289)
+|+++.++++.-+.++..| ..-.|. ..+.+.+++|.++|++||+++|.||++.++ ..|.. ...+..
T Consensus 189 le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~--~~~~~~--------- 256 (427)
T d2gsaa_ 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYG--GVQEKF--------- 256 (427)
T ss_dssp HHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT--CHHHHT---------
T ss_pred HHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eeccc--chHHhc---------
Confidence 5667776644444466667 333454 567889999999999999999999999987 33432 222221
Q ss_pred CCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-----cccCCCChHHHHHHHHHhC---CchHHHHHHHHHHH
Q 044773 80 VWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-----SSFGLVSSQTQYLLSALLS---DKKFAQNYISENKK 151 (289)
Q Consensus 80 ~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~ 151 (289)
+...-+.+++|.+| .|+.+|.++++ +.+.+.+... .+.+..|++...++.+.|+ +.+. .+.+++..+
T Consensus 257 --gi~PDi~~~gK~lg-gG~p~~a~~~~-~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l-~~~~~~~g~ 331 (427)
T d2gsaa_ 257 --GVTPDLTTLGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT-YEYLDQITK 331 (427)
T ss_dssp --TCCCSEEEECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH-HHHHHHHHH
T ss_pred --CCCHHHHhhhhccC-CCcceeeeeeh-HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhH-HhhhhHHHH
Confidence 22223566889998 88999999985 4454443321 1223477777777666655 3232 233333333
Q ss_pred HHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCcccc------CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCe
Q 044773 152 RLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLS------SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGW 224 (289)
Q Consensus 152 ~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 224 (289)
++++. +.+..++.++.... ..+|++.+.-...+.. .........+...++ +.||.+.|+..- .
T Consensus 332 ~l~~~---L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll-~~Gv~l~p~~~~-----~- 401 (427)
T d2gsaa_ 332 RLSDG---LLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQFE-----A- 401 (427)
T ss_dssp HHHHH---HHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTTS-----C-
T ss_pred HHHHH---HHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHH-HCCEEECCCCCc-----c-
Confidence 33333 33333444443322 2233332211111111 111111124556666 569998875321 1
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 225 FRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 225 ~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
+-+++. +++++++++++++.+++++
T Consensus 402 ~~~~l~-~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 402 GFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EECCTT-CCHHHHHHHHHHHHHHHTC
T ss_pred eeCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 123434 6999999999999998764
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.47 E-value=8.1e-12 Score=109.82 Aligned_cols=201 Identities=14% Similarity=0.173 Sum_probs=131.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++|+|++.+|.||+..+.+ +++|+++|+++|+++++|..+....+ .... ..+-++++.|
T Consensus 147 ~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~-----~~Pl------------~~GaDivihS 206 (397)
T d1y4ia1 147 PETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYC-----QQPL------------QLGADIVVHS 206 (397)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT-----CCGG------------GGTCSEEEEE
T ss_pred CCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCccc-----Ccch------------hcCCCEEEEe
Confidence 68999999999999999998 99999999999999999999974322 1111 2245699999
Q ss_pred CccccC-CCCceEEEEEecCHHHHHH-HHhcccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 90 LSKDLG-LPGFRVGAIYSNDDTVVAA-ATKMSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 90 ~sK~~g-~~G~r~G~i~~~~~~~~~~-~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
++|.++ .+..=.|.++++++.+.+. +...... + ..++.....+.+-|+. +.-+.++..++...+.+.|+
T Consensus 207 ~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~lRm~~~~~nA~~lA~~L~ 279 (397)
T d1y4ia1 207 VTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCENALKIARFLE 279 (397)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HHHHHHHHHHHHHHHHHHHH
Confidence 999995 4445567777765555442 2222222 2 2667777777777776 34455667777888888998
Q ss_pred hcC-C-ceecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-------
Q 044773 166 KAG-I-SCLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------- 219 (289)
Q Consensus 166 ~~g-~-~~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------- 219 (289)
++. + +|..| .||++. +.+... .+.+..+++.-.++.. +..+|.
T Consensus 280 ~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~s-f~~~~~---------~~~~~~f~~~L~l~~~-a~SlGg~eSLi~~ 348 (397)
T d1y4ia1 280 GHPSITRVYYPGLSSHPQYELGQRQMSLPGGIIS-FEIAGG---------LEAGRRMINSVELCLL-AVSLGDTETLIQH 348 (397)
T ss_dssp TCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEE-EEETTH---------HHHHHHHHHTCSSSEE-CSCCSCSSCEEEC
T ss_pred hCCCcCeEeCCCCCCCccccccccccCCCCeEEE-EEecCC---------HHHHHHHHHcCCccce-eeccCcccceeeC
Confidence 872 2 12222 355544 444432 1233344444444332 333331
Q ss_pred ------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 220 ------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+|||++. |+.+.+++.|.+++++.
T Consensus 349 p~~~th~~~~~e~r~~~Gi~~~liRlsvGl---Ed~~DLi~Dl~~AL~~a 395 (397)
T d1y4ia1 349 PASMTHSPVAPEERLKAGITDGLIRLSVGL---EDPEDIINDLEHAIRKA 395 (397)
T ss_dssp TTTTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHcCCCcCEEEEEecc---CCHHHHHHHHHHHHHHh
Confidence 124789999997 77777788888887754
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.47 E-value=1.4e-12 Score=117.83 Aligned_cols=239 Identities=14% Similarity=0.119 Sum_probs=147.4
Q ss_pred hHHHhhhCC--CccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-------cCCCCccChhhhhh
Q 044773 2 YQLAQKRHL--KVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-------FSSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~~--~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-------~~~~~~~~~~~~~~ 71 (289)
++++++... .+.++++.+|+|+. |.+++.+++++|.++|+++|+.+++|.++.... ..+....++.++..
T Consensus 163 le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~ 242 (456)
T d1c7ga_ 163 LATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVH 242 (456)
T ss_dssp HHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHH
T ss_pred HHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcc
Confidence 455554432 35688999998875 788999999999999999999999999985211 11223344554433
Q ss_pred ccccccCCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHhcc-------ccCCCChHHHHHHHHHhCCchHHHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMS-------SFGLVSSQTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~~ 144 (289)
+. -..-.++..|++|.++.++ -|+++++++.+.+..+... .++..+.....+++..+.+... .+
T Consensus 243 ~~------~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~-~~ 313 (456)
T d1c7ga_ 243 EM------FSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YE 313 (456)
T ss_dssp HH------HTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HH
T ss_pred cc------ccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcC-HH
Confidence 21 1123366779999997552 1888888887766554321 1222333333333333332211 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccC--CChhhHHHHHHHHHHhcCeEEeCCCCC--C--
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSS--NTFEAEMELWKKIVYDVKLNISPGSSC--H-- 218 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f--~-- 218 (289)
+++ .-.++.++|.+.|.+.|+.+..|.++...+++....... ........+...+..+.||...+...+ +
T Consensus 314 ~l~----~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~ 389 (456)
T d1c7ga_ 314 YIE----HRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRS 389 (456)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBC
T ss_pred HHH----HHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccC
Confidence 222 224455778899999899988888887777765432211 111233456677777889975432111 0
Q ss_pred C-------CCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 219 C-------TEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 219 ~-------~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+ .....+|++++. .|.+++|.+++.|+++.+....
T Consensus 390 ~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~ 433 (456)
T d1c7ga_ 390 KETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp SSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGG
T ss_pred CcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhh
Confidence 0 112469999863 4899999999999988765543
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.45 E-value=3.1e-12 Score=112.39 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=95.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++|+|++.+|.||+..+.+ ++.|+++|+++|+.+++|+.|....+- .+ .++ +-++++.
T Consensus 142 ~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~-~P----l~~------------GaDivih 201 (392)
T d1gc0a_ 142 TPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ-RP----LEL------------GADLVVH 201 (392)
T ss_dssp CTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC-CG----GGG------------TCSEEEE
T ss_pred CCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc-Ch----HHh------------CCCEEEE
Confidence 367999999999999999999 999999999999999999999853221 11 122 5569999
Q ss_pred cCccccC-CCCceEEEEEecCHHHHHH-HHhccc-c-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLG-LPGFRVGAIYSNDDTVVAA-ATKMSS-F-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g-~~G~r~G~i~~~~~~~~~~-~~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|.+|.++ .+..-.|.++++++.+... ...... . ...++.....+.+-++. +..+.++..++...+.+.|
T Consensus 202 S~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-------L~lRm~~~~~nA~~lA~~L 274 (392)
T d1gc0a_ 202 SATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMDRHCANAQVLAEFL 274 (392)
T ss_dssp ETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHH
T ss_pred ecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-------HHHHHHHHHHHHHHHHHHH
Confidence 9999995 4457778888865554432 222222 2 23667777777777776 3455566777778888888
Q ss_pred Hhc
Q 044773 165 EKA 167 (289)
Q Consensus 165 ~~~ 167 (289)
+++
T Consensus 275 ~~h 277 (392)
T d1gc0a_ 275 ARQ 277 (392)
T ss_dssp HTC
T ss_pred HhC
Confidence 876
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.45 E-value=6.3e-12 Score=110.67 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=128.0
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
.+++++|++.+|.||+..+.+ +++|+++|+++|+++|+|+.+....+- . + . ..+-++++.
T Consensus 151 ~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~-~---P-l------------~~GaDiVih 210 (398)
T d1qgna_ 151 QKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ-K---A-L------------ALGADLVLH 210 (398)
T ss_dssp HSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C---T-T------------TTTCSEEEE
T ss_pred cccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccC-C---c-h------------hhCCCEEEE
Confidence 368999999999999999999 999999999999999999999743221 1 1 1 225568999
Q ss_pred cCccccCCCC-ceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGLPG-FRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 89 s~sK~~g~~G-~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
|++|.++..+ .=.|.++. +......+..... ++ ..++.....+.+-++. +..+.++..++...+.+.|+
T Consensus 211 S~TKy~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------L~lRm~~~~~nA~~lA~~L~ 282 (398)
T d1qgna_ 211 SATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILE 282 (398)
T ss_dssp CTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHH
T ss_pred echhhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHHHHH
Confidence 9999996444 44566655 5555554444332 22 2566666666666665 35556667778888888898
Q ss_pred hc-CCc-eecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC-------
Q 044773 166 KA-GIS-CLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------- 219 (289)
Q Consensus 166 ~~-g~~-~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------- 219 (289)
++ .++ |..| -||++. +.+... .+-+..+++.-.++.. +..+|.
T Consensus 283 ~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~s-f~~~g~---------~~~a~~f~~~L~l~~~-a~SlGg~~SLi~~ 351 (398)
T d1qgna_ 283 AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVS-FEVDGD---------LLTTAKFVDALKIPYI-APSFGGCESIVDQ 351 (398)
T ss_dssp TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEE-EEESSC---------HHHHHHHHHHCSSSEE-CSCCCSSSCEEEC
T ss_pred hCCCeeecCCCCCCCCcchhhhhhhcCCCCceee-eeecCC---------HHHHHHHHHcCCccee-eeCCCCCcceeeC
Confidence 87 221 2222 244443 444321 1222333444444332 333332
Q ss_pred ------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 044773 220 ------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 220 ------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~ 250 (289)
..++.||||++. |+.+.+++.|++++++
T Consensus 352 p~~~th~~~~~~~~~~~Gi~~~liRlSvGl---Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 352 PAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDS 397 (398)
T ss_dssp HHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred cchhccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHhc
Confidence 124789999997 6677778888887764
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=5.5e-13 Score=118.07 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=130.8
Q ss_pred CccEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLGT-TMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +.-.|. ..+++.+++|.++|++||+++|.||++++++..|..+. .. .. +...-+.
T Consensus 177 ~iAa-vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~-~~-~~-----------~v~PDi~ 242 (387)
T d1vefa1 177 ETAA-VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA-FE-HF-----------GIVPDIL 242 (387)
T ss_dssp TEEE-EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST-HH-HH-----------TCCCSEE
T ss_pred CeEE-EEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc-cc-cC-----------CcCCcee
Confidence 4555 55567 444564 57889999999999999999999999999866665432 11 11 2223366
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHhc--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATKM--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEK 166 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 166 (289)
+++|.+| .|..++.++..++ +.+..... .+++..|++...++.+.|+...- ....+++++..+++.+.|++
T Consensus 243 ~~gK~l~-gG~~~~~~~~~~~-~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~-----~~~~~~v~~~g~~l~~~L~~ 315 (387)
T d1vefa1 243 TLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER-----TRLWERAAELGPWFMEKLRA 315 (387)
T ss_dssp EECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHT
T ss_pred eecccCC-CCcccccccccee-eeeccccCCccccCCCCcchhhhcccchhhccc-----ccccchHhhhhHHHHHHHHh
Confidence 6889998 8889999988543 33332221 22334788888887777765321 23445566667778888876
Q ss_pred cCCc-ee-cCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHH
Q 044773 167 AGIS-CL-KSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQR 243 (289)
Q Consensus 167 ~g~~-~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~ 243 (289)
+.-+ +. ...-|++..+++.+... .....++.+.|+.+.+. +...+|++++. ++++++++++++
T Consensus 316 l~~~~v~~vrg~Gl~~~ie~~~~~~--------~~~~~~~~~~g~l~~~~------g~~~ir~~Ppl~it~~~ld~~~~~ 381 (387)
T d1vefa1 316 IPSPKIREVRGMGLMVGLELKEKAA--------PYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEA 381 (387)
T ss_dssp SCCTTEEEEEEETTEEEEEESSCSH--------HHHHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCCceEEEeecceEEEEEEeCCch--------HHHHHHHHHCCCeEEec------CCCEEEEECCccCCHHHHHHHHHH
Confidence 5211 11 11123455566654321 23334445668877653 23578999854 799999999999
Q ss_pred HHHHH
Q 044773 244 LKAFV 248 (289)
Q Consensus 244 l~~~l 248 (289)
+++++
T Consensus 382 i~~aL 386 (387)
T d1vefa1 382 VRAVL 386 (387)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98876
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.6e-12 Score=114.36 Aligned_cols=209 Identities=15% Similarity=0.148 Sum_probs=122.3
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
++++++|++++++|+||...+ ++++.++++. .++++++|.+++. +..+..+.+ .+.+++
T Consensus 137 ~~~t~lv~is~v~~~tG~~~~---~~~i~~~~~~~~~~~~~~vD~~q~~----g~~~~d~~~------------~~~D~~ 197 (376)
T d1eg5a_ 137 DEDTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTI----GKIPFSLEK------------LEVDYA 197 (376)
T ss_dssp CTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTT----TTSCCCCTT------------TCCSEE
T ss_pred CCCceEEEEECCccccceeee---ehhhhhhhhhcccCceeEEEeeecc----ccccccccc------------cCccce
Confidence 368999999999999999999 6666666544 4899999999974 333333322 256799
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHH-HHh-----ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAA-ATK-----MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKL 160 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~-~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 160 (289)
++|++|.+|.+|..+.|+-- ...... ... ....+..+.............. ...............+++
T Consensus 198 ~~s~~K~~gp~G~~~l~~~~--~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 272 (376)
T d1eg5a_ 198 SFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKL 272 (376)
T ss_dssp EEEGGGGTSCTTCEEEEECT--TSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHH
T ss_pred ecccceeecCCCceeEEecc--CcccCCcccCCCCcccccCCcccchhhhhHHHHhhcc---ccchhhhhhhhhhhhhhh
Confidence 99999999888876666432 211000 000 0011113334444444433322 222344455566666777
Q ss_pred HHHHHhcCCceecCCce---EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC----------------
Q 044773 161 VSGLEKAGISCLKSNAG---LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE---------------- 221 (289)
Q Consensus 161 ~~~l~~~g~~~~~~~~g---~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~---------------- 221 (289)
.+.|...+.....+... ......++.. +...+.. .++++||.+++|..|....
T Consensus 273 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~ 344 (376)
T d1eg5a_ 273 VSGLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQN-LLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRI 344 (376)
T ss_dssp HHHHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHH-HHHHTTEECBC------------CHHHHTTCCHHH
T ss_pred ccccccccccccccccccccceeeeccCCC-------CHHHHHH-HHhhCCeEEeCcchhcCCccchhHHHHHcCCCccc
Confidence 77777654333322211 1122333321 1123444 4568899999887764321
Q ss_pred -CCeEEEEEec-CCHHHHHHHHHHHHHHHH
Q 044773 222 -PGWFRVCFAN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 222 -~~~~Ris~~~-~~~e~l~~~l~~l~~~l~ 249 (289)
.+.+|+|++. +|++|++.+++.|++++.
T Consensus 345 ~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 345 AQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp HHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 2469999975 799999999999999876
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.42 E-value=2.6e-12 Score=112.66 Aligned_cols=210 Identities=12% Similarity=0.108 Sum_probs=135.8
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
++++++.+++.+|.||...+ ++++.++|+++|..+++|.+++. |....++. ..+.++++.|
T Consensus 142 ~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~----g~~~~~~~------------~~~~d~~~~s 202 (377)
T d1vjoa_ 142 HRPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSL----GGVPIFLD------------AWGVDLAYSC 202 (377)
T ss_dssp HCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTT----TTSCCCTT------------TTTCSEEECC
T ss_pred Ccceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchhh----hhhhhccc------------ccccceeeec
Confidence 36788899988999999999 99999999999999999999973 22223332 3466788999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc------------------cc--cCCCCh-HHHHHHHHHhCCchHHHHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM------------------SS--FGLVSS-QTQYLLSALLSDKKFAQNYISE 148 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~------------------~~--~~~~~~-~~q~~~~~~l~~~~~~~~~~~~ 148 (289)
..|.++.| -.+|+++.++..+....... .. ....+. .....+..+..... ..-.+.
T Consensus 203 ~~K~~~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~g~~~ 279 (377)
T d1vjoa_ 203 SQKGLGCS-PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA--QEGLAN 279 (377)
T ss_dssp SSSTTCSC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH--HHCHHH
T ss_pred ccccccCC-CEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhh--hcCchH
Confidence 99988533 23566666443333221110 00 111122 22222222222111 222466
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceecCCc---eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 149 NKKRLKQRHRKLVSGLEKAGISCLKSNA---GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
..+..+++.+.+.+.+.+.++....+.. ...+.+.+++..+. .++...|++++||.+..|... ...+.|
T Consensus 280 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~~------~~l~~~L~~~~gI~v~~G~~~--~~~~~~ 351 (377)
T d1vjoa_ 280 CWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDG------KAVARRLLNEHNIEVGGGLGE--LAGKVW 351 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCH------HHHHHHHHHHHCEECEECCGG--GTTTEE
T ss_pred HHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCCH------HHHHHHHHhcCCEEEecCccc--ccCCEE
Confidence 6777888888899999887765443221 22344556654332 568888888999999887643 345689
Q ss_pred EEEE-ec-CCHHHHHHHHHHHHHHHH
Q 044773 226 RVCF-AN-MSEDTLKLSMQRLKAFVD 249 (289)
Q Consensus 226 Ris~-~~-~~~e~l~~~l~~l~~~l~ 249 (289)
||++ +. +++|++++++++|+++++
T Consensus 352 Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 352 RVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 9995 54 579999999999998873
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.42 E-value=4.1e-12 Score=108.71 Aligned_cols=201 Identities=13% Similarity=0.155 Sum_probs=120.2
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccc
Q 044773 14 GVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKD 93 (289)
Q Consensus 14 ~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~ 93 (289)
.++.+++.|+.|...+.++++++.++|+++++++++|+++.+..+.... .+...... .........+.+|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~ 208 (345)
T d1v72a1 138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG-CSPAEMTW--------KAGVDALSFGATKN 208 (345)
T ss_dssp EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT-CCTTTTTG--------GGTCCEEEECCGGG
T ss_pred eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccc-cCHHHhhc--------cccccccccCcccc
Confidence 3466666889999999999999999999999999999999764333211 11111110 11233334444444
Q ss_pred cCCCCceEEEEEecCHH-HHHHHHhc-cccCCCChHHH--HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 044773 94 LGLPGFRVGAIYSNDDT-VVAAATKM-SSFGLVSSQTQ--YLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-G 168 (289)
Q Consensus 94 ~g~~G~r~G~i~~~~~~-~~~~~~~~-~~~~~~~~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 168 (289)
.+..+ +.+...... ........ ......+.... .+....+.+.. ..+......++.+++.+.+.++ |
T Consensus 209 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~g 280 (345)
T d1v72a1 209 GVLAA---EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL-----WLRNARKANAAAQRLAQGLEGLGG 280 (345)
T ss_dssp TCSSC---EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccc---cccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhh-----hhhhccchhhHHHHHHHHHHhcCC
Confidence 33222 333332222 22222221 11121222222 22233333322 2344455556667788888887 7
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAF 247 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~ 247 (289)
+.+..|..+.+++++++. +.++.|+ +.|+.+.++. .+++.+||+++. +|+|++|.+++.|+++
T Consensus 281 ~~~~~p~~~niv~~~~~~-----------~~~~~L~-~~gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 281 VEVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EEEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cEeccCCCccEEEEEcCH-----------HHHHHHH-HcCCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 777777777788888753 3566666 5598876432 346799999965 7999999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.41 E-value=4.4e-12 Score=111.71 Aligned_cols=213 Identities=15% Similarity=0.130 Sum_probs=134.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.+++++++++.+|.||...+ ++++.++|+++++.+++|.+++. +..+..+. .++.++++.|
T Consensus 141 ~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~~~~~~vD~~ss~----g~~pid~~------------~~~~d~~~~s 201 (388)
T d2ch1a1 141 HQPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASL----CGVPFYMD------------KWEIDAVYTG 201 (388)
T ss_dssp HCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB----TTBCCCTT------------TTTCCEEECC
T ss_pred CCcceeeeeecccccccccc---hhhhcchhccccceeeeeeeecc----cccccchh------------ccCceEEEEc
Confidence 46899999999999999999 88888999999999999999984 23333332 3467789999
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhc------------------------cccCCCChHHHHHHHHHhCCchHHHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKM------------------------SSFGLVSSQTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~ 145 (289)
-.|.++.+ --+|+++.++..+....... ......+......+...+.... ...
T Consensus 202 ~~K~~~gp-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~--~~~ 278 (388)
T d2ch1a1 202 AQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA--EEG 278 (388)
T ss_dssp CC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH--HHC
T ss_pred cccccCCC-CeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHH--Hhh
Confidence 99988523 23677777544443322110 0111122233333333333211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceecCC----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 044773 146 ISENKKRLKQRHRKLVSGLEKAGISCLKSN----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTE 221 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 221 (289)
.....+..+.........+...++....++ +...+.+.+++..+. .++...|++++||.+.+|.+. ..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~------~~l~~~l~~~~gI~v~~G~~~--~~ 350 (388)
T d2ch1a1 279 LENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDW------WKVSQYAMNNFSLEVQGGLGP--TF 350 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH------HHHHHHHHHHHCBCCBCCCGG--GT
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCH------HHHHHHHhhcCCEEEeCCCcc--cc
Confidence 333444444555555565655544433222 122445677764433 468888888889999988653 33
Q ss_pred CCeEEEE-Eec-CCHHHHHHHHHHHHHHHHHHH
Q 044773 222 PGWFRVC-FAN-MSEDTLKLSMQRLKAFVDSIT 252 (289)
Q Consensus 222 ~~~~Ris-~~~-~~~e~l~~~l~~l~~~l~~~~ 252 (289)
.+.|||+ ++. +++|+++.++++|+++|++..
T Consensus 351 ~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 351 GKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 5689999 565 578999999999999999854
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=2.4e-11 Score=106.82 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=93.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHH----HcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCce
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFIT----EKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRV 84 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~----~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (289)
.+++++|++.+|.||+..+.+ +++|+++|+ ++|+++|+|+.+....+- .+ . ..+-+
T Consensus 136 ~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~-~P----l------------~~GAD 195 (393)
T d1n8pa_ 136 KENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NP----L------------NFGAD 195 (393)
T ss_dssp CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CG----G------------GGTCS
T ss_pred hhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC-Cc----h------------hhCCC
Confidence 368999999999999999999 888888887 678999999999753221 11 1 22456
Q ss_pred EEEecCccccC-CCCceEEEEEecCHHHHHHHHhccc-cC-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 044773 85 HIVYSLSKDLG-LPGFRVGAIYSNDDTVVAAATKMSS-FG-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLV 161 (289)
Q Consensus 85 i~i~s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (289)
+++.|++|+++ .+.+-.|.++.+++.+.+.+..... ++ ..++.....+.+-++. +..+.++..++...+.
T Consensus 196 iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T-------l~lR~~~~~~nA~~lA 268 (393)
T d1n8pa_ 196 IVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRVRQAALSANKIA 268 (393)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHH
T ss_pred EEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc-------hhhHHHHHHHHHHHHH
Confidence 99999999995 4457778888877777665554433 22 2566666666666665 3444555666677778
Q ss_pred HHHHhc
Q 044773 162 SGLEKA 167 (289)
Q Consensus 162 ~~l~~~ 167 (289)
+.|+.+
T Consensus 269 ~~L~~~ 274 (393)
T d1n8pa_ 269 EFLAAD 274 (393)
T ss_dssp HHHTSC
T ss_pred HHHHhc
Confidence 888653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=2.8e-11 Score=105.43 Aligned_cols=210 Identities=14% Similarity=0.068 Sum_probs=137.7
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEE
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
+++++.+++++..+.||...+ +++|.++|+++ +.++++|.+.+. +..+.++ |.++.+++
T Consensus 118 ~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss~----g~~~i~~------------d~~~iD~~ 178 (348)
T d1iuga_ 118 KEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSL----LVGEVAL------------EAMGVDAA 178 (348)
T ss_dssp CSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTB----TTBCCCS------------GGGTCSEE
T ss_pred ccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhcc----ccccccc------------ccccCCEE
Confidence 457889999999899999999 88888888887 478899999883 2222332 24467799
Q ss_pred EecCcccc-CCCCceEEEEEecCHHHHH------------HHH---hccccCCCChHHHHHHHHHhCCchHHHHHHHHHH
Q 044773 87 VYSLSKDL-GLPGFRVGAIYSNDDTVVA------------AAT---KMSSFGLVSSQTQYLLSALLSDKKFAQNYISENK 150 (289)
Q Consensus 87 i~s~sK~~-g~~G~r~G~i~~~~~~~~~------------~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 150 (289)
+.|-.|.+ |.|| +|+++.+++.+.. ... .....++++.....++..+|+.. .+...+..
T Consensus 179 ~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~---~~~~~~~~ 253 (348)
T d1iuga_ 179 ASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---LPRLEEHL 253 (348)
T ss_dssp EEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---GGGHHHHH
T ss_pred EeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHH---HHHHhHHH
Confidence 99999999 6667 7888886554332 111 11223445555666666666532 11123333
Q ss_pred HHHHHHHHHHHHHHHhcCCceecCCce-EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEE
Q 044773 151 KRLKQRHRKLVSGLEKAGISCLKSNAG-LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCF 229 (289)
Q Consensus 151 ~~~~~~~~~l~~~l~~~g~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~ 229 (289)
+..+...+.+...+++.|++..+...+ -...+.+|+..+. .++...| +++||.+.+|. ++.....+||+.
T Consensus 254 ~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~~------~~~~~~l-~~~gi~i~~G~--~~l~~~~~RIg~ 324 (348)
T d1iuga_ 254 ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPY------ARVKEAF-AQRGAVIAGGQ--GPLKGKVFRLSL 324 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCH------HHHHHHH-HTTTEECEECC--GGGTTTEEEECC
T ss_pred HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCCH------HHHHHHH-HHCCeEEEcCc--cccCCCEEEEeC
Confidence 333444455666666667776543211 1344667654432 3466555 57899998875 333446899998
Q ss_pred -ecCCHHHHHHHHHHHHHHHHHH
Q 044773 230 -ANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 230 -~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
+..+.++++.++++|++++++.
T Consensus 325 mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 325 MGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 5579999999999999999874
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=7.9e-11 Score=103.50 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=90.2
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE--KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
+++++|++.+|.||+..+.+ +++++++|++ +|+++++|+.+....+ ....++ +-++++
T Consensus 142 ~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~-----~~Pl~~------------GaDivv 201 (391)
T d1cl1a_ 142 PNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-----FKALDF------------GIDVSI 201 (391)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-----SCGGGG------------TCSEEE
T ss_pred cccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhh-----hccccc------------ccceEE
Confidence 57999999999999999998 8888888866 4999999999975322 111222 456999
Q ss_pred ecCccccCCC-CceEEEEEecCHHHHHHHHhcccc-CCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLP-GFRVGAIYSNDDTVVAAATKMSSF-GLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLE 165 (289)
Q Consensus 88 ~s~sK~~g~~-G~r~G~i~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 165 (289)
.|++|+++.. ..=.|.++.+++............ ...++.....+.+-++. +..+.++..++...+.+.|+
T Consensus 202 hS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~nA~~vA~~L~ 274 (391)
T d1cl1a_ 202 QAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHESSLKVAEWLA 274 (391)
T ss_dssp EETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999633 355677777555443333222222 23566666666665665 34555667777888888898
Q ss_pred hc
Q 044773 166 KA 167 (289)
Q Consensus 166 ~~ 167 (289)
++
T Consensus 275 ~h 276 (391)
T d1cl1a_ 275 EH 276 (391)
T ss_dssp TC
T ss_pred hc
Confidence 87
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.35 E-value=3.7e-11 Score=106.26 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=125.8
Q ss_pred CCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 9 HLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 9 ~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++++++|++++.+|.||.+++ +++|+++|+++++.+++|.++.. |.....+..+ +.++++.
T Consensus 162 ~~~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~----g~~~~~~~~~------------~~d~~~~ 222 (404)
T d1qz9a_ 162 DQDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQA------------GADYAIG 222 (404)
T ss_dssp STTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHH------------TCSEEEE
T ss_pred CCCceEEEEecccccccceec---HHHHhccccccccceeEEeeccc----cccccccccc------------cceEEEE
Confidence 468999999999999999999 99999999999999999999984 3333444444 5568899
Q ss_pred cCccccCCCCceEEEEEecCHHHHHHHHh-------------------------ccccCCCChHHHHHHHH---HhCCch
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVAAATK-------------------------MSSFGLVSSQTQYLLSA---LLSDKK 140 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~~~~~-------------------------~~~~~~~~~~~q~~~~~---~l~~~~ 140 (289)
|.+|.++.+.--.|++..++..... ... ....+..+......+.. .+....
T Consensus 223 s~~K~~~~~~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (404)
T d1qz9a_ 223 CTYKYLNGGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD 301 (404)
T ss_dssp CSSSTTCCCTTCCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC
T ss_pred echhhcccCCceEEEEEechhhhhh-CCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhh
Confidence 9999885343345777765433211 110 00111123333332222 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCceecCC-----ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCC
Q 044773 141 FAQNYISENKKRLKQRHRKLVSGLEK-AGISCLKSN-----AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPG 214 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg 214 (289)
...+++....+......+.+.+.. .|+++..|. ++ .+.+.+++ ..++...| .++||.+..
T Consensus 302 --~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~-~vsf~~~~---------~~~v~~~L-~~~gi~~~~- 367 (404)
T d1qz9a_ 302 --MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS-HVSFEHPE---------GYAVIQAL-IDRGVIGDY- 367 (404)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS-EEEEECTT---------HHHHHHHH-HTTTEECEE-
T ss_pred --HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceee-EEEEecCC---------HHHHHHHH-HHCCCEEee-
Confidence 233333333333333334444433 377776543 23 34455442 13466665 577997531
Q ss_pred CCCCCCCCCeEEEEEe--cCCHHHHHHHHHHHHHHHHHH
Q 044773 215 SSCHCTEPGWFRVCFA--NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 215 ~~f~~~~~~~~Ris~~--~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.+|||++ .++++|++.+++.|++++++.
T Consensus 368 -----r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 368 -----REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp -----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -----cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 11468999996 379999999999999999864
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=5.3e-12 Score=114.11 Aligned_cols=203 Identities=15% Similarity=0.188 Sum_probs=119.4
Q ss_pred CccEEEEeCC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 11 KVKGVLVTNP-SNPLG-TTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG-~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
++-+ ++..| +...| ...+.+.+++|.++|+++|+++|.||++.+++.+|..+.. +..+ . +.+..+.
T Consensus 248 ~iAa-vivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~--e~~g--------i-~~~PDiv 315 (461)
T d1ohwa_ 248 TVAG-IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH--EHWG--------L-DDPADVM 315 (461)
T ss_dssp CEEE-EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGG--GGGC--------C-SSCCSEE
T ss_pred ccce-eeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccc--cccc--------c-ccCchhh
Confidence 4555 55556 54445 5578899999999999999999999999998777654321 1111 0 1123355
Q ss_pred cCccccCCCCceEEEEEecCHHHHH-HHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 89 SLSKDLGLPGFRVGAIYSNDDTVVA-AATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 89 s~sK~~g~~G~r~G~i~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+++|.++ .| +..+. ..+.. ......+.+..+++...++.+.|+...- ....++.++..+++.+.|.++
T Consensus 316 ~~gK~l~-~g----~~~~~-~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~-----~~l~~~~~~~g~~l~~~l~~l 384 (461)
T d1ohwa_ 316 TFSKKMM-TG----GFFHK-EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKR-----EDLLSNAAHAGKVLLTGLLDL 384 (461)
T ss_dssp EECGGGS-SE----EEEEC-GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccc-cc----ccccc-cccccccccccccccccccccchhhcccchhhhh-----hhHHHHHHHHHHHHHHHHHHH
Confidence 7899996 43 33332 22111 1111122233677777766666653221 112233333333344444332
Q ss_pred ----C--CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHH
Q 044773 168 ----G--ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLS 240 (289)
Q Consensus 168 ----g--~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~ 240 (289)
. +.-.... |+++.+++++.. ...++...++ ++||.+.+.. +..|||.++. .++++++.+
T Consensus 385 ~~~~~~~i~~vrG~-Gl~~~ie~~~~~------~~~~i~~~~~-~~Gll~~~~~------~~~ir~~PpL~it~~eid~~ 450 (461)
T d1ohwa_ 385 QARYPQFISRVRGR-GTFCSFDTPDES------IRNKLISIAR-NKGVMLGGCG------DKSIRFRPTLVFRDHHAHLF 450 (461)
T ss_dssp HHHCTTTCEEEEEE-TTEEEEECSSHH------HHHHHHHHHH-HTTEECEEET------TTEEECCCCTTCCHHHHHHH
T ss_pred HhhCCCceEEeeee-eEEEEEEcCCHH------HHHHHHHHHH-HCCeEEeeCC------CCEEEEeCCcCCCHHHHHHH
Confidence 1 2112223 445567776432 2245777766 6699988742 3579999854 699999999
Q ss_pred HHHHHHHHHH
Q 044773 241 MQRLKAFVDS 250 (289)
Q Consensus 241 l~~l~~~l~~ 250 (289)
+++|.+++.+
T Consensus 451 ~~~l~~~l~e 460 (461)
T d1ohwa_ 451 LNIFSDILAD 460 (461)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.35 E-value=1.4e-11 Score=111.41 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=137.5
Q ss_pred hHHHhhhCC--CccEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCcc-------CCCCccChhhhhh
Q 044773 2 YQLAQKRHL--KVKGVLVTNPSNPL-GTTMSRNELNLLVNFITEKNIHLISDEIYSGTVF-------SSPGFVSIMEILK 71 (289)
Q Consensus 2 l~~~~~~~~--~~~~i~l~~p~NPt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-------~~~~~~~~~~~~~ 71 (289)
++++++... .+.+++++.++|.. |.+++.+++++|.++|+++|+.+|+|++|..... .+....+..++.+
T Consensus 171 l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 250 (465)
T d1ax4a_ 171 LKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIF 250 (465)
T ss_dssp HHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHH
T ss_pred HHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhcc
Confidence 455555432 23444555556655 4678999999999999999999999999863211 0122234444443
Q ss_pred ccccccCCCCCceEEEecCccccCCCCceEEEEEecCHH-HHHHHH----hc---cccCCCChHHHHHHHHHhCCchHHH
Q 044773 72 DRNCENTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDT-VVAAAT----KM---SSFGLVSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 72 ~~~~~~~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~-~~~~~~----~~---~~~~~~~~~~q~~~~~~l~~~~~~~ 143 (289)
+. ..-..++..|.+|.++ +.+.|++++++.. +..... .. ..+.........++...+....
T Consensus 251 ~~------~~~~d~~s~s~~k~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~--- 319 (465)
T d1ax4a_ 251 DM------YKYADALTMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT--- 319 (465)
T ss_dssp HH------GGGCSEEEEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT---
T ss_pred cc------ccccceeEeecccCcc--cccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhh---
Confidence 21 1112355556666654 4456888886543 222221 11 1122223333333333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEEEEEecCccccCC--ChhhHHHHHHHHHHhcCeEEeCCCCC----
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLSSN--TFEAEMELWKKIVYDVKLNISPGSSC---- 217 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f---- 217 (289)
.+...+...++.+++.+.|++.|+++..+.++.++.++........ ...........++.+.||...+....
T Consensus 320 --~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~ 397 (465)
T d1ax4a_ 320 --EEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397 (465)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred --hHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceecccccccccc
Confidence 1222334455677899999999988888888877777665432221 11222345566666889875432210
Q ss_pred ----C---CCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 218 ----H---CTEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 218 ----~---~~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+ ......+|+++.. .|+|++|.++++|+++.++...
T Consensus 398 ~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 398 DPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 442 (465)
T ss_dssp CTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred ccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 0123579998742 4899999999999998887654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.33 E-value=6.6e-11 Score=104.14 Aligned_cols=201 Identities=15% Similarity=0.197 Sum_probs=127.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITE-KNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++.+|.||+..+.+ ++++++.+++ +++++|+|+.+....+ ....++ +-++++.
T Consensus 143 ~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~-----~~Pl~~------------GaDiVvh 202 (394)
T d1e5ea_ 143 PNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMI-----TNPVDF------------GVDVVVH 202 (394)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTT-----CCGGGG------------TCSEEEE
T ss_pred ccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCccc-----CCchhc------------CCCEEEe
Confidence 57999999999999999999 8888876665 6899999999974321 222222 4569999
Q ss_pred cCccccC-CCCceEEEEEecCHHHHHHHHh-cccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLG-LPGFRVGAIYSNDDTVVAAATK-MSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g-~~G~r~G~i~~~~~~~~~~~~~-~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|++|+++ .+..-.|.++++++........ .... + ..++.....+.+-++. +..+.++..++...+.+.|
T Consensus 203 S~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-------L~lRm~r~~~nA~~lA~~L 275 (394)
T d1e5ea_ 203 SATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-------LNIRMKAESENAMKVAEYL 275 (394)
T ss_dssp ETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-------HHHHHHHHHHHHHHHHHHH
Confidence 9999995 4446677788754444333222 2222 2 2566766667776776 3555666777888899999
Q ss_pred HhcC-C-ceecC-----------------CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCC------
Q 044773 165 EKAG-I-SCLKS-----------------NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHC------ 219 (289)
Q Consensus 165 ~~~g-~-~~~~~-----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 219 (289)
+++. + ++..| -||++. +.+... .+-+..+++.-.++.. +..+|.
T Consensus 276 ~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~s-f~~~~~---------~~~a~~f~~~l~l~~~-a~SlGg~eSLi~ 344 (394)
T d1e5ea_ 276 KSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMIT-FILKSG---------FEGAKKLLDNLKLITL-AVSLGGCESLIQ 344 (394)
T ss_dssp HTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEE-EEETTH---------HHHHHHHHHTCSSSEE-SSCCCSSSCEEE
T ss_pred hhcCCccEEeCCCcccccchhhhhcccccCCCeee-eeccCC---------HHHHHHHHHhCCccce-eeccCCccceeE
Confidence 8872 2 12221 245444 333321 1233444555555332 333432
Q ss_pred -------------------CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 044773 220 -------------------TEPGWFRVCFANMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 -------------------~~~~~~Ris~~~~~~e~l~~~l~~l~~~l~~~ 251 (289)
..++.||||++. |+.+.+++.|.++++..
T Consensus 345 ~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl---Ed~eDLi~Dl~qAl~~l 392 (394)
T d1e5ea_ 345 HPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDAL 392 (394)
T ss_dssp CGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHHh
Confidence 124689999997 66777777777777654
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.32 E-value=1.4e-11 Score=104.20 Aligned_cols=203 Identities=17% Similarity=0.133 Sum_probs=121.0
Q ss_pred cEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCC-ccChhhhhhccccccCCCCCceEEEecCc
Q 044773 13 KGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPG-FVSIMEILKDRNCENTEVWNRVHIVYSLS 91 (289)
Q Consensus 13 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~i~i~s~s 91 (289)
..++++.+.|.+|.+...+++..+.+.|++++.++++|++|......... ........ ....+...+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 201 (340)
T d1svva_ 132 PKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA----------RLTDMFYIGAT 201 (340)
T ss_dssp EEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH----------HHCSEEEEECT
T ss_pred ceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccc----------ccceeeecCCc
Confidence 33444444455677889999999999999999999999999754333222 22222221 12234444444
Q ss_pred cccCCCCceEEEEEecCHHHHHHHHh---ccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044773 92 KDLGLPGFRVGAIYSNDDTVVAAATK---MSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKAG 168 (289)
Q Consensus 92 K~~g~~G~r~G~i~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 168 (289)
|..+ +...++.............. .............++..++....+ ....++...+++++.+.|++.|
T Consensus 202 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~g 274 (340)
T d1svva_ 202 KAGG--MFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLF-----FELGAHSNKMAAILKAGLEACG 274 (340)
T ss_dssp TTTC--SSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccc--cccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHH-----HHHHHHHHHHHhhhHHHHhcCC
Confidence 5443 33345555432222211111 111121233444444455554432 3445667778888999999999
Q ss_pred CceecCCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHH
Q 044773 169 ISCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKA 246 (289)
Q Consensus 169 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~ 246 (289)
+++..|..+.+++++++. .....++++..+...++. ..+++.+||+++. +|++|+|+++++|++
T Consensus 275 ~~~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~---~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 275 IRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp CCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeeecCCCceEEEEeCCH-----------HHHHHHHHhhhhhccccc---CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 998877767788777653 245556544333323222 2346889999864 799999999999976
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.31 E-value=1.2e-10 Score=101.50 Aligned_cols=219 Identities=13% Similarity=0.116 Sum_probs=142.2
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..++. +||+|++..-.+|- .++ .+++.++|.+.|+++++|-+|......+...++..+.
T Consensus 155 l~~~a~~~-kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~------------ 216 (405)
T d1kl1a_ 155 VREKARLH-RPKLIVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY------------ 216 (405)
T ss_dssp HHHHHHHH-CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT------------
T ss_pred HHHHHHhh-CcceEEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh------------
Confidence 45566665 89997777655543 345 8899999999999999999995432323333332222
Q ss_pred CceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-cccCCCCh--HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-SSFGLVSS--QTQYLLSALLSDKKFAQNYISENKKRLKQRHR 158 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-~~~~~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
-+++.+|.+|+| +|-|-|.|+++ +.+.+.+... -+....++ ....+.+.++.+ .+....++-.+....+.+
T Consensus 217 -aDvvt~tThKtl--rGPrgg~I~~~-~~~~~~i~~avfPg~qggp~~~~iAa~Aval~E--a~~~~fk~Ya~qvv~NAk 290 (405)
T d1kl1a_ 217 -AHFVTTTTHKTL--RGPRGGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE--ALQDDFKAYAKRVVDNAK 290 (405)
T ss_dssp -CSEEEEESSSTT--CCCSCEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHH
T ss_pred -hhheeccccccc--cCCCCceEEec-chhHHHHHhhhCcccccCcchhHHHHHHHHHHH--HhChHHHHHHHHHHHHHH
Confidence 237789999999 44566999995 4455554433 23333443 333333333332 123445667778888999
Q ss_pred HHHHHHHhcCCceecC-CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEEec--
Q 044773 159 KLVSGLEKAGISCLKS-NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN-- 231 (289)
Q Consensus 159 ~l~~~l~~~g~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~~Ris~~~-- 231 (289)
.|.+.|.+.|+++... ..+..+++++...... -..++.+|++.||.+. |+..-.+..+..+||+...
T Consensus 291 aLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~~~------g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~T 364 (405)
T d1kl1a_ 291 RLASALQNEGFTLVSGGTDNHLLLVDLRPQQLT------GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVT 364 (405)
T ss_dssp HHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHH
T ss_pred HHHHHHhcCCceeecCCCccceeeccccccCCc------HHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHH
Confidence 9999999999988743 3345677887653222 2466777889999875 4432222234689999843
Q ss_pred ---CCHHHHHHHHHHHHHHHHH
Q 044773 232 ---MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 232 ---~~~e~l~~~l~~l~~~l~~ 250 (289)
..+++++++.+.|.++++.
T Consensus 365 trG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 365 TRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTC
T ss_pred hCCCCHHHHHHHHHHHHHHHhc
Confidence 4678999999988888753
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=7.8e-11 Score=103.06 Aligned_cols=220 Identities=11% Similarity=0.067 Sum_probs=142.1
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..+.. ++|+|++..-.+| ..++ .+++.++|.+.|+++++|-+|......+...++....
T Consensus 157 l~~~a~~~-kPklIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~------------ 218 (416)
T d1dfoa_ 157 LEKQAKEH-KPKMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH------------ 218 (416)
T ss_dssp HHHHHHHH-CCSEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT------------
T ss_pred HHHHHHHh-ccceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc------------
Confidence 34555554 8999887754444 4556 8899999999999999999996432333322332222
Q ss_pred CceEEEecCccccCCCCceEEEEEecC--HHHHHHHHhc-cccCCCCh--HHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSND--DTVVAAATKM-SSFGLVSS--QTQYLLSALLSDKKFAQNYISENKKRLKQR 156 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~--~~~~~~~~~~-~~~~~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (289)
-+++.+|++|+| +|-|-|.|+++. +.+.+.+... -+....++ ....+.+.++.+. +....++-.++...+
T Consensus 219 -aDvvt~tThKtl--rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea--~~~~fk~Y~~qvv~N 293 (416)
T d1dfoa_ 219 -AHVVTTTTHKTL--AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA--MEPEFKTYQQQVAKN 293 (416)
T ss_dssp -SSEEEEESSSTT--CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHH
T ss_pred -cceeeeehhhcc--cCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHH--cCHHHHHHHHHHHHH
Confidence 248899999999 445569999853 4555555433 22222333 3333333334331 133456667778889
Q ss_pred HHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCCCCCCeEEEEEec
Q 044773 157 HRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHCTEPGWFRVCFAN 231 (289)
Q Consensus 157 ~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~~Ris~~~ 231 (289)
.+.|.+.|.+.|+++.. ...+..+++++...--. -..++.++++.||.+. |+..-.+..+..+||+...
T Consensus 294 A~~La~~L~~~G~~iv~ggTdnHlvlvdl~~~~~~------G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a 367 (416)
T d1dfoa_ 294 AKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLT------GKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPA 367 (416)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCC------HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHH
T ss_pred HHHHHHHHHhCCcccccCCCCCceeEEEecccCCC------HHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHH
Confidence 99999999999998874 23345667888643211 2467778889999874 3332222335789999843
Q ss_pred -----CCHHHHHHHHHHHHHHHHH
Q 044773 232 -----MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 232 -----~~~e~l~~~l~~l~~~l~~ 250 (289)
..++|+++..+-|.++++.
T Consensus 368 ~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 368 ITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHc
Confidence 4679999999998888764
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.29 E-value=6.3e-11 Score=102.03 Aligned_cols=131 Identities=17% Similarity=0.256 Sum_probs=88.5
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEe
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFI-TEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVY 88 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~ 88 (289)
+++++|++.+|.||+..+.+ ++.+++++ +++++++|+|+.+....+- .+ . ..+-++++.
T Consensus 82 ~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~-~p----l------------~~GaDiVv~ 141 (331)
T d1pffa_ 82 PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT-NP----L------------DLGVDIVVH 141 (331)
T ss_dssp TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-CG----G------------GGTCSEEEE
T ss_pred cccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc-cc----c------------ccCCCEEEe
Confidence 67999999999999999998 77777765 5689999999999753221 11 1 224569999
Q ss_pred cCccccCC-CCceEEEEEecCHHHHHHHHh-cccc-C-CCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 89 SLSKDLGL-PGFRVGAIYSNDDTVVAAATK-MSSF-G-LVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 89 s~sK~~g~-~G~r~G~i~~~~~~~~~~~~~-~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
|++|+++. +..-.|+++.+++...+.... .... + ..++.....+.+-++ .+..+.++..++...+.+.|
T Consensus 142 S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~-------Tl~~Rm~~~~~nA~~lA~~L 214 (331)
T d1pffa_ 142 SATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTL-------TLDMRVKRAAENAQKVAEFL 214 (331)
T ss_dssp ETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Confidence 99999953 446667777754444443332 2222 2 134444444444333 35666777788888899999
Q ss_pred Hhc
Q 044773 165 EKA 167 (289)
Q Consensus 165 ~~~ 167 (289)
+++
T Consensus 215 ~~h 217 (331)
T d1pffa_ 215 HEH 217 (331)
T ss_dssp HHC
T ss_pred hhC
Confidence 887
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=1.9e-10 Score=101.70 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=91.9
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
..+++|+|++.+|.||+..+.+ ++.|+++|+++|+.+|+|+.++..-+.-. + . ..+-++++
T Consensus 141 ~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~---P-l------------~~GaDiVv 201 (421)
T d2ctza1 141 TDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR---P-L------------AWGAALVT 201 (421)
T ss_dssp CCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC---G-G------------GGTCSEEE
T ss_pred cCCCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceecc---c-c------------ccCCcEEE
Confidence 3468999999999999999998 99999999999999999999962101111 1 1 22556999
Q ss_pred ecCccccCCC-CceEEEEEecCHH-------------------------------HHHHHHh-ccccC-CCChHHHHHHH
Q 044773 88 YSLSKDLGLP-GFRVGAIYSNDDT-------------------------------VVAAATK-MSSFG-LVSSQTQYLLS 133 (289)
Q Consensus 88 ~s~sK~~g~~-G~r~G~i~~~~~~-------------------------------~~~~~~~-~~~~~-~~~~~~q~~~~ 133 (289)
.|++|.++.. ..=.|.++.+++. +.+.... ...++ ..++.....+.
T Consensus 202 hS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~ 281 (421)
T d2ctza1 202 HSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVL 281 (421)
T ss_dssp EETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred EechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence 9999999644 4666777764321 1111111 11122 25667766666
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044773 134 ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA 167 (289)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 167 (289)
+-++. +..+.++..++...+.+.|+++
T Consensus 282 rgl~T-------L~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 282 LGMET-------LSLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HHHTT-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCcc-------hhhHHHHHHHHHHHHHhhhccC
Confidence 66666 3555666777888899999887
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=5.6e-11 Score=104.41 Aligned_cols=211 Identities=12% Similarity=0.097 Sum_probs=128.9
Q ss_pred HHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 4 LAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEK--NIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 4 ~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~--~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++.. .+++++++++.+|.||...+ ++.+.+.|+++ ++++++|.+++. |..+.++. .+
T Consensus 129 ~~~~~-~~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~~~~~~~~vDa~qs~----g~~pid~~------------~~ 188 (382)
T d2bkwa1 129 EKLSQ-NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI----GCEEFEFD------------EW 188 (382)
T ss_dssp HHHHH-SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT----TTSCCCTT------------TT
T ss_pred HHhhh-ccchheeeeecccccccccc---chhhhhhccccccceeeeeeccccc----cccccccc------------cc
Confidence 34443 47899999999999999999 77777777665 599999999984 33334433 33
Q ss_pred CceEEEecCcccc-CCCCceEEEEEecCHHHHHHHHh----------------------c-----cccCCCChHHHHHHH
Q 044773 82 NRVHIVYSLSKDL-GLPGFRVGAIYSNDDTVVAAATK----------------------M-----SSFGLVSSQTQYLLS 133 (289)
Q Consensus 82 ~~~i~i~s~sK~~-g~~G~r~G~i~~~~~~~~~~~~~----------------------~-----~~~~~~~~~~q~~~~ 133 (289)
+.++++.|-.|.+ |.+| +|+++.+++.+...... . ...++++.....++.
T Consensus 189 giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~ 266 (382)
T d2bkwa1 189 GVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 266 (382)
T ss_dssp TCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred CeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHH
Confidence 6779999999999 5556 89999865544321100 0 112234444555555
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceec---CC---ceEEEEEecCccccCCChhhHHHHHHHHHHh
Q 044773 134 ALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLK---SN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYD 206 (289)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ 206 (289)
.+++... ..-+....++.++..+++++.+.+. ++.... .. .++ ..+.+++. .++.. .+++
T Consensus 267 ~aL~~~~--~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v-~~~~~~~~---------~~~~~-~L~~ 333 (382)
T d2bkwa1 267 VALKEIL--EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGL-TAVYVADP---------PDVIA-FLKS 333 (382)
T ss_dssp HHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSC-EEEECSCH---------HHHHH-HHHH
T ss_pred HHHHHHH--HhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcE-EEEcCCCH---------HHHHH-HHHH
Confidence 5554321 2224555566677778888888764 332221 11 122 23444432 23444 4568
Q ss_pred cCeEEeCCCCCCCCCCCeEEEE-Eec-CCHHHHHHHHHHHHHHHHH
Q 044773 207 VKLNISPGSSCHCTEPGWFRVC-FAN-MSEDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 207 ~gi~v~pg~~f~~~~~~~~Ris-~~~-~~~e~l~~~l~~l~~~l~~ 250 (289)
+||.+.+|.... ...+.|||+ ++. .++++++.+++.|..+.+.
T Consensus 334 ~gi~i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~ 378 (382)
T d2bkwa1 334 HGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 378 (382)
T ss_dssp TTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred CCeEEECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 899999875432 234689999 554 3556676666666554443
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.1e-10 Score=102.48 Aligned_cols=229 Identities=17% Similarity=0.162 Sum_probs=128.7
Q ss_pred CccEEEEeCCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCc-------cCCCCccChhhhhhccccccCCCCC
Q 044773 11 KVKGVLVTNPSNP-LGTTMSRNELNLLVNFITEKNIHLISDEIYSGTV-------FSSPGFVSIMEILKDRNCENTEVWN 82 (289)
Q Consensus 11 ~~~~i~l~~p~NP-tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~ 82 (289)
.+.++++.+.+|. .|.+++.+++++|.++|++||+.+++|+++.... ..+....++.++..+. ...
T Consensus 183 ~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~ 256 (467)
T d2v1pa1 183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET------YKY 256 (467)
T ss_dssp GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH------GGG
T ss_pred ccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhh------ccc
Confidence 3567777777664 4788899999999999999999999999985211 1112223333333221 123
Q ss_pred ceEEEecCccccCCCCceEEEEEecCHHHHHHHHhc-------c---ccCCCChHHHHHHHHHhCCchHHHHHHHHHHHH
Q 044773 83 RVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM-------S---SFGLVSSQTQYLLSALLSDKKFAQNYISENKKR 152 (289)
Q Consensus 83 ~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~-------~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 152 (289)
..++..|.+|.++.++ -|+++.+++.+....... . .+...+.....+++..+..... .+++ +.
T Consensus 257 ~d~~s~s~~K~~~~~~--gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~ 329 (467)
T d2v1pa1 257 ADMLAMSAKKDAMVPM--GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWL----AY 329 (467)
T ss_dssp CSEEEEESSSTTCCSS--CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC-HHHH----HH
T ss_pred CCEEEecCCCCCCCCC--ceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhh-HHHH----HH
Confidence 4567778889886443 367777665544332211 1 1111222333333333332211 2223 33
Q ss_pred HHHHHHHHHHHHHhcCCceecCCceEEEEEecCcccc--CCChhhHHHHHHHHHHhcCeEEeCCCC--------CC---C
Q 044773 153 LKQRHRKLVSGLEKAGISCLKSNAGLFCWVDMRHLLS--SNTFEAEMELWKKIVYDVKLNISPGSS--------CH---C 219 (289)
Q Consensus 153 ~~~~~~~l~~~l~~~g~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~--------f~---~ 219 (289)
..++.+++.+.|.+.+..+.++.+.... ++...... ...-.........++.+.||....... .+ +
T Consensus 330 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~ 408 (467)
T d2v1pa1 330 RIAQVQYLVDGLEEIGVVCQQAGGHAAF-VDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLP 408 (467)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSCEE-EEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCC
T ss_pred HHHHHHHHHHHHHhcCCcccCCCcccee-ecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccC
Confidence 3466788888998887766554432222 22111111 101122234566677788986431110 00 1
Q ss_pred CCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN--MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 220 ~~~~~~Ris~~~--~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
.....+|++++. .|+|++|.++++|+++++....
T Consensus 409 ~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~ 444 (467)
T d2v1pa1 409 CPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp CSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 234679999853 5899999999999999875443
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.17 E-value=7.2e-10 Score=99.80 Aligned_cols=224 Identities=11% Similarity=-0.051 Sum_probs=119.0
Q ss_pred ccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCcc-ChhhhhhccccccCCCCCceEEEecC
Q 044773 12 VKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFV-SIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 12 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
+..+++...+|..|.+.+ +++|+++|+++|+.+++|++|........... +......+. ....+.++++.|+
T Consensus 174 ~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~----~~~~~~D~~~~S~ 246 (462)
T d1c4ka2 174 PFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDL----GPEDPGIIVVQSV 246 (462)
T ss_dssp CBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCC----CTTSCEEEEEECH
T ss_pred CceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccc----cccCCccEEEEec
Confidence 444444444567899999 99999999999999999999986532222111 111110000 0022457899999
Q ss_pred ccccCCCCceEEEEEecCHHHH--------HHHHh-c--cccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVV--------AAATK-M--SSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRK 159 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~--------~~~~~-~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (289)
+|.+|.++ ..+++..++..+. ..+.. . .....++......+..+..... ....++..+...++.++
T Consensus 247 HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~--~~~g~~l~~~~~~~a~~ 323 (462)
T d1c4ka2 247 HKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE--GEAGRKLWHDLLITTIE 323 (462)
T ss_dssp HHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred Cccccccc-ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHH
Confidence 99998443 2345544443321 11111 1 1122233333333333322111 23345556666677777
Q ss_pred HHHHHHhcC-Ccee-cC-------------------------------------CceEE------EEEecCcccc-----
Q 044773 160 LVSGLEKAG-ISCL-KS-------------------------------------NAGLF------CWVDMRHLLS----- 189 (289)
Q Consensus 160 l~~~l~~~g-~~~~-~~-------------------------------------~~g~~------~~i~~~~~~~----- 189 (289)
+++.+.+.+ .... .+ ....+ +.+..+....
T Consensus 324 ~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~ 403 (462)
T d1c4ka2 324 ARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDY 403 (462)
T ss_dssp HHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEE
T ss_pred HHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccch
Confidence 777776652 1100 00 00001 1222221100
Q ss_pred -CCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 190 -SNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 190 -~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
... ........ .++++||.+.. .+.+.+|++++. +|+++++.+++.|.++.+.+..
T Consensus 404 ~~~G-~~~~~~~~-~L~~~gI~~e~------~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 404 EDFG-VPATIVAN-YLRDHGIIPEK------SDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp CSSC-CCHHHHHH-HHHHTTCCCSE------ECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcC-CcHHHHHH-HHHHcCCeeec------cCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 000 11233444 45688986542 234689999964 7999999999999998776653
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.15 E-value=1.6e-09 Score=95.68 Aligned_cols=220 Identities=14% Similarity=0.138 Sum_probs=142.5
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..++. +||+|++-.-.+|- .++ .+++.++|.+.|+++++|-+|......+...++....
T Consensus 168 ~~~~a~~~-kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~------------ 229 (463)
T d2a7va1 168 LALTARLF-RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH------------ 229 (463)
T ss_dssp HHHHHHHH-CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT------------
T ss_pred HHHHHhhc-CCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh------------
Confidence 34555665 89997777655553 345 8889999999999999999995433333333343322
Q ss_pred CceEEEecCccccCCCCceEEEEEecCH--------------HHHHHHHhc-cccCCCChHH--HHHHHHHhCCchHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDD--------------TVVAAATKM-SSFGLVSSQT--QYLLSALLSDKKFAQN 144 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~--------------~~~~~~~~~-~~~~~~~~~~--q~~~~~~l~~~~~~~~ 144 (289)
-+++.+|.+|+| +|-|-|.|+++++ .+.+.+... -+....++.. ..+.+.++.+ .+..
T Consensus 230 -aDvvt~tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~e--a~~~ 304 (463)
T d2a7va1 230 -ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ--ACTP 304 (463)
T ss_dssp -CSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH--HHSH
T ss_pred -hhhhhchhhhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHH--hcCc
Confidence 238889999999 5566699998652 334444432 2222233322 3333333332 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHC 219 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~ 219 (289)
..++-.+...++.+.|.+.|.+.|+++.. ...+..+++++...... -+.++..|++.||.+. |+.. .+
T Consensus 305 ~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~------G~~ae~~Le~~gI~~Nkn~iP~D~-~~ 377 (463)
T d2a7va1 305 MFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD------GARAERVLELVSITANKNTCPGDR-SA 377 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCC------HHHHHHHHHHTTEECEEECCTTCC-CS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCC------HHHHHHHHHhccCccCCccCCCCC-CC
Confidence 45667777888899999999999998764 33455677887543211 3467778889999874 4442 22
Q ss_pred CCCCeEEEEEec-----CCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+..+||+... ..++|++++.+.|.+++...
T Consensus 378 ~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~~ 414 (463)
T d2a7va1 378 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 414 (463)
T ss_dssp SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 335679999843 46689999999998888643
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=2e-09 Score=97.17 Aligned_cols=213 Identities=14% Similarity=0.152 Sum_probs=133.2
Q ss_pred CccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecC
Q 044773 11 KVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSL 90 (289)
Q Consensus 11 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~ 90 (289)
.+-+|+.+..++.||.+=+ +++|.++|+++++++.+|.+|++.............- ...-+-+..++
T Consensus 235 ~p~~VvataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~g----------i~~aDSit~d~ 301 (476)
T d1js3a_ 235 IPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNG----------VEFADSFNFNP 301 (476)
T ss_dssp EEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTT----------GGGCSEEEECH
T ss_pred CcEEEeecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcC----------CcccceeeecC
Confidence 3456677777899999988 9999999999999999999998764433332222211 12334667889
Q ss_pred ccccCCCCceEEEEEecCHHHHHHHHh--------c----------cccC-CCC----hHHHHHHHHHhCCchHHHHHHH
Q 044773 91 SKDLGLPGFRVGAIYSNDDTVVAAATK--------M----------SSFG-LVS----SQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 91 sK~~g~~G~r~G~i~~~~~~~~~~~~~--------~----------~~~~-~~~----~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
+|.++.| ..+|.++.++......... . ..+. .++ .+...+....+. .+-++
T Consensus 302 HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G-----~~g~~ 375 (476)
T d1js3a_ 302 HKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQ 375 (476)
T ss_dssp HHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHH
T ss_pred ccccccC-CcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHh-----HhHHH
Confidence 9999844 5678888877543321100 0 0000 011 222223322222 34456
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeE
Q 044773 148 ENKKRLKQRHRKLVSGLEKA-GISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWF 225 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~ 225 (289)
+..++..+..+++.+.+++. ++++.. |..+. +.+++... +. .+ .++.+.+.++..+.+.+... .+..++
T Consensus 376 ~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~i-V~Fr~~~~-d~---~n-~~l~~~l~~~G~~~~s~t~~---~g~~~l 446 (476)
T d1js3a_ 376 AYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGL-VCFRLKGS-DG---LN-EALLERINSARKIHLVPCRL---RGQFVL 446 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSE-EEEEESSC-HH---HH-HHHHHHHHHHTSCBCEEEEE---TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEECCCceEE-EEEEccCC-hH---HH-HHHHHHHHhcCCEEEeeeeE---CCEEEE
Confidence 77777778889999999888 787764 44554 44554321 11 11 35677776554455544321 234589
Q ss_pred EEEEec--CCHHHHHHHHHHHHHHHHHH
Q 044773 226 RVCFAN--MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 226 Ris~~~--~~~e~l~~~l~~l~~~l~~~ 251 (289)
|+++.+ +++++++.+++.|++..++.
T Consensus 447 R~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 447 RFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999963 68899999999999987764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.11 E-value=4.7e-09 Score=92.99 Aligned_cols=220 Identities=13% Similarity=0.119 Sum_probs=142.0
Q ss_pred hHHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCC
Q 044773 2 YQLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVW 81 (289)
Q Consensus 2 l~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (289)
+++..++. +||+|++-.-.+| ..++ .+++.++|.+.|+++++|-+|......+...++....
T Consensus 172 l~~~a~~~-kPklIi~G~S~y~--r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~------------ 233 (470)
T d1rv3a_ 172 LEENARLF-HPKLIIAGTSCYS--RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH------------ 233 (470)
T ss_dssp HHHHHHHH-CCSEEEECCSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT------------
T ss_pred HHHHHHhh-CcceEeechhhcc--ccCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChhhe------------
Confidence 34555555 7999777765554 2455 8888999999999999999996432233333333222
Q ss_pred CceEEEecCccccCCCCceEEEEEecCH--------------HHHHHHHhcc-ccCCCCh--HHHHHHHHHhCCchHHHH
Q 044773 82 NRVHIVYSLSKDLGLPGFRVGAIYSNDD--------------TVVAAATKMS-SFGLVSS--QTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 82 ~~~i~i~s~sK~~g~~G~r~G~i~~~~~--------------~~~~~~~~~~-~~~~~~~--~~q~~~~~~l~~~~~~~~ 144 (289)
-+++.+|.+|+| +|-|-|.|+++++ .+.+.+.... +....++ -...+.+.++.+. +..
T Consensus 234 -aDvvt~tTHKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea--~~~ 308 (470)
T d1rv3a_ 234 -CHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTP 308 (470)
T ss_dssp -CSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSH
T ss_pred -eeeeeeehhhhc--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh--cCh
Confidence 248899999999 4555699998653 2555554332 2222333 3333333334332 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceec-CCceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEe----CCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLK-SNAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNIS----PGSSCHC 219 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~ 219 (289)
..++-.+....+.+.|.+.|.+.|+++.. ...+..+++++....-. -..++.+|++.||.+. |+.. .+
T Consensus 309 ~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~------g~~ae~~Le~~gI~~Nkn~iP~D~-~~ 381 (470)
T d1rv3a_ 309 EFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTD------GGRAEKVLEACSIACNKNTCPGDK-SA 381 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCC------HHHHHHHHHHTTEECEEECCSSCS-CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCc------HHHHHHHHHHcCcEECCCcCCCCC-CC
Confidence 45667777888899999999999998764 33355677887643211 2457777889999874 5542 23
Q ss_pred CCCCeEEEEEec-----CCHHHHHHHHHHHHHHHHHH
Q 044773 220 TEPGWFRVCFAN-----MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 220 ~~~~~~Ris~~~-----~~~e~l~~~l~~l~~~l~~~ 251 (289)
..+..+||+... ..++|++++.+.|.++++..
T Consensus 382 ~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~ 418 (470)
T d1rv3a_ 382 LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELT 418 (470)
T ss_dssp TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 345779999842 47799999999998888644
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.1e-08 Score=91.59 Aligned_cols=231 Identities=13% Similarity=0.008 Sum_probs=138.8
Q ss_pred HHHhhhCCCccEEEEeCCCCCCccCCCHHHHHHHHH---HHHHcCCEEEEecCCCCCcc--CCCCccChhhhhhcccccc
Q 044773 3 QLAQKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVN---FITEKNIHLISDEIYSGTVF--SSPGFVSIMEILKDRNCEN 77 (289)
Q Consensus 3 ~~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~---~~~~~~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (289)
++++. +++.+|+.+.+++.||.+=+.+++..|++ .|+++++++.+|.+|+++.. ..+...-..
T Consensus 193 ~~~i~--~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~---------- 260 (450)
T d1pmma_ 193 IEACD--ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF---------- 260 (450)
T ss_dssp HHHCC--TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST----------
T ss_pred HHHhh--hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhh----------
Confidence 44444 46888888889999999999776655554 46778999999999986532 111111111
Q ss_pred CCCCCceEEEecCccccCCCCceEEEEEecCHHHHHHHHh---------ccccC-CCCh--HHHHHHHHHhCCchHHHHH
Q 044773 78 TEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDTVVAAATK---------MSSFG-LVSS--QTQYLLSALLSDKKFAQNY 145 (289)
Q Consensus 78 ~d~~~~~i~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~---------~~~~~-~~~~--~~q~~~~~~l~~~~~~~~~ 145 (289)
+....+.+..|.+|.++ ....+||++.+++........ ...+. ..+. .....+...+... ..+-
T Consensus 261 -~~~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~--G~~G 336 (450)
T d1pmma_ 261 -RLPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL--GREG 336 (450)
T ss_dssp -TSTTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHH--HHHH
T ss_pred -cccceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhh--hHHH
Confidence 12355678899999876 445689999976654221111 01111 1221 1111222222221 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCceecC---Cc-eEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC--
Q 044773 146 ISENKKRLKQRHRKLVSGLEKA-GISCLKS---NA-GLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH-- 218 (289)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~---~~-g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-- 218 (289)
+++..++..++.+++.+.|++. ++++..+ .. -..+.+++.+.... . .+..++...|. ++|..+.. ..+.
T Consensus 337 ~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~-~-~~~~~l~~~L~-~~Gw~v~~-~~~p~~ 412 (450)
T d1pmma_ 337 YTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP-G-YTLYDLSERLR-LRGWQVPA-FTLGGE 412 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCC-S-SCHHHHHHHHH-TTTCBCCE-EECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccC-C-CCHHHHHHHHH-HcCCeeec-cCcCCC
Confidence 6777888889999999999988 5666532 22 12334454432111 1 22345666654 67866531 1111
Q ss_pred CCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 219 CTEPGWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 219 ~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
......+|+.+.. .+.++++++++.|+++++...+
T Consensus 413 ~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 413 ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1234579999954 6999999999999999998875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.82 E-value=1.2e-08 Score=88.40 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=106.3
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCce
Q 044773 21 SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFR 100 (289)
Q Consensus 21 ~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r 100 (289)
+|.||...+ ++++.++|+++|+++++|.+.+. +..+..+.+ ..+.+.|.+|.++.+|.-
T Consensus 146 ~~~tg~~~~---~~~i~~~~~~~~al~~vDavss~----g~~~id~~~--------------~di~~~s~~k~~~~~~~~ 204 (361)
T d2c0ra1 146 HLTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI----LSRPFDLNQ--------------FGLVYAGAQKNLGPSGVT 204 (361)
T ss_dssp EEESEETTT---TEECSSCCCCTTSCEEEECTTTT----TSSCCCGGG--------------CSEEEEETTTTTCCSSCE
T ss_pred EEeccccee---cceEEEeeccCCceEEEEeeccc----ccccccccc--------------ceeEEEecccccccccCc
Confidence 466888887 66778889999999999999984 333333322 235567789999877643
Q ss_pred EEEEEecCHH------------HHHHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 044773 101 VGAIYSNDDT------------VVAAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQRHRKLVSGLEKA- 167 (289)
Q Consensus 101 ~G~i~~~~~~------------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 167 (289)
..++.. ... ..............++.....+......... .........+.+..+..+.......
T Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (361)
T d2c0ra1 205 VVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEE-RGGLEGVQQANRKKASLIYDAIDQSG 282 (361)
T ss_dssp EEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred EEEEEh-HHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhh-ccchHHHHHHHHHHHHHhhhhhhhcc
Confidence 333332 111 0111112222222232222222222111111 1122333444444445555555543
Q ss_pred CC-ceecCC---ceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHHHHHHH
Q 044773 168 GI-SCLKSN---AGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTLKLSMQ 242 (289)
Q Consensus 168 g~-~~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l~~~l~ 242 (289)
.. ...... +.....+.+++..+ ..++.. .++++||.+.+|... . +.|||++.. +++||++.+++
T Consensus 283 ~~~~~~~~~~~rS~~~~~~~~~~~~~------~~~~~~-~L~~~GI~~~~G~~~--~--g~~RIs~~~~~~~edv~~Lv~ 351 (361)
T d2c0ra1 283 GFYRGCVDVDSRSDMNITFRLASEEL------EKEFVK-ASEQEGFVGLKGHRS--V--GGLRASIYNAVPYESCEALVQ 351 (361)
T ss_dssp TSSEESSCGGGBCSSEEEEECSCHHH------HHHHHH-HHHHTTEESCBCCTT--T--CSEEEECCTTSCHHHHHHHHH
T ss_pred cccccCCChhhccceEEEEECCCccc------HHHHHH-HHHHCCCEEecCCCc--C--CeEEEEecCCCCHHHHHHHHH
Confidence 11 111111 12234455654322 234554 456889999887432 2 249999954 79999999999
Q ss_pred HHHHHHHHH
Q 044773 243 RLKAFVDSI 251 (289)
Q Consensus 243 ~l~~~l~~~ 251 (289)
.|+++.+..
T Consensus 352 ~l~~~~~~~ 360 (361)
T d2c0ra1 352 FMEHFKRSR 360 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999877653
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.69 E-value=2.3e-07 Score=80.45 Aligned_cols=206 Identities=9% Similarity=0.074 Sum_probs=111.9
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
+++++|++++ ..|...+ +++|.++|+++|+.||+|.+|+.......... +..+..++...
T Consensus 118 ~~tkaIi~~h---~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~--------------g~~g~~~~Sf~ 177 (376)
T d1mdoa_ 118 PQTKAIIPVH---YAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGRHI--------------GARGTAIFSFH 177 (376)
T ss_dssp TTEEEECCBC---GGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEET--------------TSSSEEEEECC
T ss_pred CCCeEEEEeC---CCCCccc---hhHHHHHHHhcCceEEeccchhccCeeCCeec--------------ccccCccccCC
Confidence 5789988764 5677777 89999999999999999999984321111110 12233344445
Q ss_pred CccccCCCCceEEEEEecCHHHHHHHHhccccCC--------------------------CChHHHHHHHHHhCCchHHH
Q 044773 90 LSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFGL--------------------------VSSQTQYLLSALLSDKKFAQ 143 (289)
Q Consensus 90 ~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~~--------------------------~~~~~q~~~~~~l~~~~~~~ 143 (289)
.+|.++.++ -|.++++++.+.+.++.+...+. .+.+.......-|..
T Consensus 178 ~~K~l~~g~--GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~----- 250 (376)
T d1mdoa_ 178 AIKNITCAE--GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQK----- 250 (376)
T ss_dssp TTSSSCSSS--CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHT-----
T ss_pred CcCCCCCCC--CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhh-----
Confidence 569886322 38899988888776654432210 111222112111221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-eecCCc----eEEEE-EecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCC
Q 044773 144 NYISENKKRLKQRHRKLVSGLEKAGIS-CLKSNA----GLFCW-VDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSC 217 (289)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~----g~~~~-i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 217 (289)
+.+..++-+++.+++.+.|.+.... ...... .++.+ +.+...... .+.+++...| ++.||.+++....
T Consensus 251 --~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Rd~l~~~L-~~~gI~~~~~y~~ 324 (376)
T d1mdoa_ 251 --LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG---ITRDALMASL-KTKGIGTGLHFRA 324 (376)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS---SCHHHHHHHH-HHTTBCCBCCCCC
T ss_pred --hhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccch---hhHHHHHHHH-HHCCCCeeeECcc
Confidence 2333444556666677777765322 221111 11111 222211111 1113466666 5779988643210
Q ss_pred C----------CCC---------CCeEEEEE-ecCCHHHHHHHHHHHHHHH
Q 044773 218 H----------CTE---------PGWFRVCF-ANMSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 218 ~----------~~~---------~~~~Ris~-~~~~~e~l~~~l~~l~~~l 248 (289)
- ... ...+.|.+ ..++.++++..++.|++++
T Consensus 325 ~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 325 AHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp GGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0 000 24466655 3368999999999998874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.9e-07 Score=78.93 Aligned_cols=207 Identities=14% Similarity=0.032 Sum_probs=111.0
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
...+++++++++.+|-||...+. +.+ .++.+++.+++|.+.+.. +.+ .. ..+.++++
T Consensus 135 ~~~~~~~v~v~~~~~~t~~~~~~---~~i--~~~~~~~~v~vDa~~~~~---~~~-vd--------------~~~~dv~~ 191 (360)
T d1bjna_ 135 WQLSDNAAYMHYCPNETIDGIAI---DET--PDFGADVVVAADFSSTIL---SRP-ID--------------VSRYGVIY 191 (360)
T ss_dssp CCCCSSCSCEEECSEETTTTEEC---CCC--CCCCTTCCEEEECTTTTT---SSC-CC--------------GGGCSEEE
T ss_pred hccCCceeEEEecccccccCccc---cce--ecccccceeeeeeecccc---cee-ee--------------eccceeEE
Confidence 34567777777788888888763 333 346678999999888732 222 22 23445788
Q ss_pred ecCccccCCCCceEEEEEecCHHHH------------HHHHhccccCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVV------------AAATKMSSFGLVSSQTQYLLSALLSDKKFAQNYISENKKRLKQ 155 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (289)
.|.+|.++.++. .|.++..+.... ............++.....+..+..... .....+...+..++
T Consensus 192 ~ss~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 269 (360)
T d1bjna_ 192 AGAQKNIGPAGL-TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK-ANGGVAEMDKINQQ 269 (360)
T ss_dssp EETTTTTSSTTC-EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred EEcccccccCCC-ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 889999985543 444444222111 1111122222222222222221111111 01223334444555
Q ss_pred HHHHHHHHHHhcCCceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEe
Q 044773 156 RHRKLVSGLEKAGISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFA 230 (289)
Q Consensus 156 ~~~~l~~~l~~~g~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~ 230 (289)
......+.+...+.....+ ..+ ...+.+++.... .++.. .++++||.+..|... -+.+|||+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~rs~~-v~~f~~~~~~~~------~~~~~-~l~~~Gi~~~~G~~~----~g~~Ris~~ 337 (360)
T d1bjna_ 270 KAELLYGVIDNSDFYRNDVAKRNRSRM-NVPFQLADSALD------KLFLE-ESFAAGLHALKGHRV----VGGMRASIY 337 (360)
T ss_dssp HHHHHHHHHHHCSSEECCBCGGGBCSS-EEEEEESSGGGH------HHHHH-HHHHTTEECCBCCTT----TCSEEEECC
T ss_pred HHHHHHHhhhccccccccCCcccccce-EEEEEcCCcccH------HHHHH-HHHHCCCEeecCCCc----cCeEEEEec
Confidence 5555555555543222111 112 333556543322 23444 456889999877322 134999995
Q ss_pred c-CCHHHHHHHHHHHHHHHHHH
Q 044773 231 N-MSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 231 ~-~~~e~l~~~l~~l~~~l~~~ 251 (289)
. +++|+++.+++.|+++.++.
T Consensus 338 ~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 338 NAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 5 79999999999999977653
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.49 E-value=3.8e-07 Score=78.46 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=99.3
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEecCccccCCCCce
Q 044773 21 SNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYSLSKDLGLPGFR 100 (289)
Q Consensus 21 ~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s~sK~~g~~G~r 100 (289)
+|-||...+ +++|.++|+++|+++|+|.+.+. +.....+.++ + +.+.+++|.++++|.
T Consensus 146 ~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~----g~~~id~~~~------------~--vd~~~~~~~k~~~~~- 203 (360)
T d1w23a_ 146 HITSNNTIY---GTQYQNFPEINHAPLIADMSSDI----LSRPLKVNQF------------G--MIYAGAQKNLGPSGV- 203 (360)
T ss_dssp EEESEETTT---TEECSSCCCCCSSCEEEECTTTT----TSSCCCGGGC------------S--EEEEETTTTTSCTTC-
T ss_pred EecCCcccc---ceeeeeccccceeeEEeeccccc----cccccccccc------------c--ceEEeeccccccCCc-
Confidence 355788888 78888999999999999999984 3333343322 3 455566676664442
Q ss_pred EEEEEecCHHH------------HHHHHhccccCCCChHHHHHH----HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044773 101 VGAIYSNDDTV------------VAAATKMSSFGLVSSQTQYLL----SALLSDKKFAQNYISENKKRLKQRHRKLVSGL 164 (289)
Q Consensus 101 ~G~i~~~~~~~------------~~~~~~~~~~~~~~~~~q~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 164 (289)
.|+++.++... ...................+. ..++.... .....+..+..........
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 278 (360)
T d1w23a_ 204 TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGG-----AEAIAKQNEEKAKIIYDTI 278 (360)
T ss_dssp EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHH
Confidence 44444421111 011111111121222222221 11122211 1122222233333333333
Q ss_pred Hhc-CCceecC-----CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCCCeEEEEEec-CCHHHH
Q 044773 165 EKA-GISCLKS-----NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFAN-MSEDTL 237 (289)
Q Consensus 165 ~~~-g~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~Ris~~~-~~~e~l 237 (289)
... ....... ..+ .+.+++++... ..++... +.++||.+..|..+- +.+|+|+.+ ++.|++
T Consensus 279 ~~~~~~~~~~~~~~~rS~~-vvsf~i~~~~~------~~~~~~~-l~~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V 346 (360)
T d1w23a_ 279 DESNGFYVGHAEKGSRSLM-NVTFNLRNEEL------NQQFLAK-AKEQGFVGLNGHRSV----GGCRASIYNAVPIDAC 346 (360)
T ss_dssp HTTTTSSEESSCGGGBCSS-EEEEECSSHHH------HHHHHHH-HHHTTEESCBCCTTT----CSEEEECCTTSCHHHH
T ss_pred hhcccccccCCChhhccee-EEEEEcCCCcc------HHHHHHH-HHHCCCeeeeCCCcc----CcEEEEeeCCCCHHHH
Confidence 332 2221111 112 34456654322 1345554 568899988775442 249999943 699999
Q ss_pred HHHHHHHHHHHHH
Q 044773 238 KLSMQRLKAFVDS 250 (289)
Q Consensus 238 ~~~l~~l~~~l~~ 250 (289)
+.+++.|+++.+.
T Consensus 347 ~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 347 IALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.46 E-value=6.3e-06 Score=72.58 Aligned_cols=206 Identities=14% Similarity=0.063 Sum_probs=122.0
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++-++++++||. .|..- +++++.+++++.|.++++|-.- ..+.+-. +..++ +-++++++
T Consensus 195 ~~~Aavmi~~Pnt-~G~~e---d~~~i~~~~h~~G~l~~~~ad~--~al~~l~--~Pg~~------------GaDi~~g~ 254 (437)
T d1wyua1 195 EEVGAVVVQNPNF-LGALE---DLGPFAEAAHGAGALFVAVADP--LSLGVLK--PPGAY------------GADIAVGD 254 (437)
T ss_dssp TTEEEEEEESSCT-TSBCC---CHHHHHHHHHHTTCEEEEECCT--TGGGTBC--CHHHH------------TCSEEEEE
T ss_pred cceeEEEEccccc-ccccc---chHHHHHHhhhccceEEeeech--hhhhccc--ccccc------------ccceEeec
Confidence 4678999999954 58763 4899999999999987776433 2232222 22222 44577777
Q ss_pred CccccCCC----CceEEEEEecCHHHHH---------------------------HHHh--ccccCCCChHHH-HHHHHH
Q 044773 90 LSKDLGLP----GFRVGAIYSNDDTVVA---------------------------AATK--MSSFGLVSSQTQ-YLLSAL 135 (289)
Q Consensus 90 ~sK~~g~~----G~r~G~i~~~~~~~~~---------------------------~~~~--~~~~~~~~~~~q-~~~~~~ 135 (289)
+|.||.| |--.|++.++++.... .+++ ..+..+.+.... ..++.+
T Consensus 255 -~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y 333 (437)
T d1wyua1 255 -GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMY 333 (437)
T ss_dssp -CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHH
T ss_pred -cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHH
Confidence 6766532 3446888886543221 0111 112222222222 222222
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCceEE-EEEecCccccCCChhhHHHHHHHHHHhcCeEEeC
Q 044773 136 LSDKKFAQNYISENKKRLKQRHRKLVSGLEKA-GISCLKSNAGLF-CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISP 213 (289)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 213 (289)
+.... .+=+++..+....+.+++.+.|.+. |++...+..-+. +.++++.. ..++++.|+ ++|+...
T Consensus 334 ~~~lG--~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~~--------~~~i~k~L~-d~G~~~~- 401 (437)
T d1wyua1 334 LAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKD--------PEAVRRALA-ERGFHGA- 401 (437)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSC--------HHHHHHHHH-HTTCCCC-
T ss_pred hhhcC--cccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCCC--------HHHHHHHHH-hCCCCCC-
Confidence 22111 3347888889999999999999987 776554432211 23444321 245777776 6688521
Q ss_pred CCCCCCCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Q 044773 214 GSSCHCTEPGWFRVCFAN-MSEDTLKLSMQRLKAFV 248 (289)
Q Consensus 214 g~~f~~~~~~~~Ris~~~-~~~e~l~~~l~~l~~~l 248 (289)
...|....++.+.|++.. .+.++||++++.|++++
T Consensus 402 ~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 402 TPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 112222345789999964 68999999999998863
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.34 E-value=3.4e-05 Score=66.85 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=114.0
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccC-CCCccChhhhhhccccccCCCCCceEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFS-SPGFVSIMEILKDRNCENTEVWNRVHI 86 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~i~ 86 (289)
..+++++|+++ ++.|...+ ++++.++|+++++.+|+|.+++..... |.. ... ..+..++
T Consensus 119 i~~~tk~i~~~---~~~g~~~d---~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~---~g~-----------~g~~~~~ 178 (384)
T d1b9ha_ 119 VTPRTKVIMPV---HMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGKR---VGE-----------LDSIATF 178 (384)
T ss_dssp CCTTEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE---GGG-----------SSSCEEE
T ss_pred ccccccccccc---cccccccc---cccchhhhhhhhhhhhhhhceecccccCCEe---cCc-----------cccccee
Confidence 34678887655 45566666 899999999999999999999853221 111 111 1233455
Q ss_pred EecCccccCCCCceEEEEEecCHHHHHHHHhcccc-------------------CCCChHHHHHHHHHhCCchHHHHHHH
Q 044773 87 VYSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSF-------------------GLVSSQTQYLLSALLSDKKFAQNYIS 147 (289)
Q Consensus 87 i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~-------------------~~~~~~~q~~~~~~l~~~~~~~~~~~ 147 (289)
-.+.+|.++.++ -|.++++++.+.+.++.+... +..+.+....+..-|+. ++++.+
T Consensus 179 Sf~~~K~i~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~---ld~~~~ 253 (384)
T d1b9ha_ 179 SFQNGKLMTAGE--GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLAR---LDEQIA 253 (384)
T ss_dssp ECCTTSSSCSSS--CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTT---HHHHHH
T ss_pred cccccccccccc--cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhh---cccchh
Confidence 556789885321 388998877776654432111 11233332222232332 133333
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCceec----C--CceEEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCC----
Q 044773 148 ENKKRLKQRHRKLVSGLEKA-GISCLK----S--NAGLFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSS---- 216 (289)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~-g~~~~~----~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~---- 216 (289)
+ -+++.+++.+.|.+. ++.... . ...++..+.++.... ..-+++...|. +.||.+.+...
T Consensus 254 ~----R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Rd~l~~~L~-~~GI~~~~~y~plh~ 324 (384)
T d1b9ha_ 254 V----RDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----ERRNALVDRLV-EAGLPAFAAFRAIYR 324 (384)
T ss_dssp H----HHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----HHHHHHHHHHH-HTTCCEEECCCCGGG
T ss_pred h----hhhhhhhhhhhhhcccccccccccccccccccccccceeccccc----ccHHHHHHHHH-HCCCCeeeeCcchhc
Confidence 3 344556666777665 443211 1 111223333432211 12234677764 77998875421
Q ss_pred ------CCCCC-----------------CCeEEEEEe-cCC-HHHHHHHHHHHHHHHHH
Q 044773 217 ------CHCTE-----------------PGWFRVCFA-NMS-EDTLKLSMQRLKAFVDS 250 (289)
Q Consensus 217 ------f~~~~-----------------~~~~Ris~~-~~~-~e~l~~~l~~l~~~l~~ 250 (289)
++... +..+.|-+. .++ ++|++..++.|++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 325 TDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp SHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 00000 133566653 345 67999999999998875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=5.1e-06 Score=74.05 Aligned_cols=214 Identities=11% Similarity=0.036 Sum_probs=127.3
Q ss_pred CCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEEec
Q 044773 10 LKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIVYS 89 (289)
Q Consensus 10 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i~s 89 (289)
.++.++++.+|+++.+.-- +.+.+.+++++.+..+++|-+-..... +- ....+. ..++++..
T Consensus 201 ~~~a~v~v~~p~~~g~~e~---~~~~~~~~~h~~g~~~~~~~~~~~~~~-~l--~~p~~~------------g~div~vg 262 (471)
T d1wyub1 201 PHVAALMLTNPNTLGLFER---RILEISRLCKEAGVQLYYDGANLNAIM-GW--ARPGDM------------GFDVVHLN 262 (471)
T ss_dssp TTEEEEEECSSCTTSCCCT---THHHHHHHHHHHTCEEEEEGGGGGGTT-TT--CCHHHH------------TCSEEECC
T ss_pred ccccceeeccCCCcccccc---hhhhhHHHHHhccccccccccchhhhh-hc--cccCcc------------cccccccc
Confidence 4677889999987654432 477888899999988888766543322 11 111112 22344555
Q ss_pred CccccC----CCCceEEEEEecCHHHHHHHH-------------------hcc-ccCCCCh-HHHHHHHHHhCCchHHHH
Q 044773 90 LSKDLG----LPGFRVGAIYSNDDTVVAAAT-------------------KMS-SFGLVSS-QTQYLLSALLSDKKFAQN 144 (289)
Q Consensus 90 ~sK~~g----~~G~r~G~i~~~~~~~~~~~~-------------------~~~-~~~~~~~-~~q~~~~~~l~~~~~~~~ 144 (289)
.++.+| .+|--+|++.++++.+.. +. ++. ...+.|. +.-.++..++... ..+
T Consensus 263 ~~q~~G~P~~~GGP~~G~~a~~~~~~R~-~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsll--G~~ 339 (471)
T d1wyub1 263 LHKTFTVPHGGGGPGSGPVGVKAHLAPY-LPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL--GLE 339 (471)
T ss_dssp TTTTTCCCCTTSCCCCCCEEECGGGGGG-CCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH--HHH
T ss_pred cccccccccccccccccceeehhhhhcc-CCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHh--Cch
Confidence 666554 345558899886544322 11 000 1112232 2222222222221 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceecCCceEE--EEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 044773 145 YISENKKRLKQRHRKLVSGLEKAGISCLKSNAGLF--CWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCHCTEP 222 (289)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 222 (289)
=+++..+...++..++.+.|++.|+++.. ++.+| ..++.+.... ..++.+.|+ ++|+.- |...|....+
T Consensus 340 GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~~~~~~------~~~i~k~L~-~~G~~~-~~~~~p~~~~ 410 (471)
T d1wyub1 340 GLKKAAALAVLNARYLKELLKEKGYRVPY-DGPSMHEFVAQPPEGFR------ALDLAKGLL-ELGFHP-PTVYFPLIVK 410 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CSSCCSCEEEBCSTTCC------HHHHHHHHH-HTTCCC-CEESCSTTST
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCceecc-CcceeeEEeecCCCCCC------HHHHHHHHH-HcCCCC-CcccCcCCCC
Confidence 57888899999999999999877887643 33232 2345443322 245778887 568752 2233332346
Q ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Q 044773 223 GWFRVCFAN-MSEDTLKLSMQRLKAFVDSITT 253 (289)
Q Consensus 223 ~~~Ris~~~-~~~e~l~~~l~~l~~~l~~~~~ 253 (289)
+.+-|++.- .+.+|||.++++|++++++.+.
T Consensus 411 ~~llv~vTE~~tkedID~lv~aL~~i~~e~~~ 442 (471)
T d1wyub1 411 EALMVEPTETEAKETLEAFAEAMGALLKKPKE 442 (471)
T ss_dssp TCEEECCCTTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 678888854 6999999999999999998754
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.33 E-value=5.5e-05 Score=65.09 Aligned_cols=211 Identities=9% Similarity=0.041 Sum_probs=115.6
Q ss_pred hCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceEEE
Q 044773 8 RHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVHIV 87 (289)
Q Consensus 8 ~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~i 87 (289)
.++++++|++++ .-|...+ +++|.++|+++++.+|+|.+++........... ...+..++-
T Consensus 117 ~~~~t~avi~vh---~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G-------------~~g~~~~~S 177 (371)
T d2fnua1 117 INERTKAIVSVD---YAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQNKKVG-------------GFALASVFS 177 (371)
T ss_dssp CCTTEEEEEEEC---GGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTEETT-------------SSSSEEEEE
T ss_pred ccchhhcccccc---ccccccc---cccccccccccchhhccchhhccCceeccccCC-------------ccccccccc
Confidence 346889988775 4577777 889999999999999999999853221111111 012333444
Q ss_pred ecCccccCCCCceEEEEEecCHHHHHHHHhccccC------------------CCChHHHHHHHHHhCCchHHHHHHHHH
Q 044773 88 YSLSKDLGLPGFRVGAIYSNDDTVVAAATKMSSFG------------------LVSSQTQYLLSALLSDKKFAQNYISEN 149 (289)
Q Consensus 88 ~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~~~~~------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~ 149 (289)
...+|.++..+ -|.++++++.+.+.+......+ ..+.+.......-|+. ++.+++++
T Consensus 178 f~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~---l~~~~~~R 252 (371)
T d2fnua1 178 FHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKK---APFLMQKR 252 (371)
T ss_dssp CCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTT---HHHHHHHH
T ss_pred ccccccccccc--ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhh---ccchhhhh
Confidence 45589996332 4899998888877766432111 1222332223333332 23333333
Q ss_pred HHHHHHHHHHHHHHHHhc-CCceecC----Cce-EEEEEecCccccCCChhhHHHHHHHHHHhcCeEEeCCCCCC-----
Q 044773 150 KKRLKQRHRKLVSGLEKA-GISCLKS----NAG-LFCWVDMRHLLSSNTFEAEMELWKKIVYDVKLNISPGSSCH----- 218 (289)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g-~~~~i~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----- 218 (289)
+ ++.+++.+.|.+. ++....+ ... +...+.+..... ..-.++...| ++.||.+.+....-
T Consensus 253 ~----~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~r~~~~~~L-~~~gI~~~~~y~pl~~~~~ 323 (371)
T d2fnua1 253 E----EAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TCKKLILESL-HKRGILAQVHYKPIYQYQL 323 (371)
T ss_dssp H----HHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GGHHHHHHHH-HHTTEECBCCCCCGGGSHH
T ss_pred h----hhhhhhcccccccccccccccccccccccccccccccccch----hHHHHHHHHH-HHCCCCcceeCcccccCHH
Confidence 2 3344455666654 2322211 111 112222332211 1123466666 47799987643210
Q ss_pred -----CCC---------CCeEEEEEe-cCCHHHHHHHHHHHHHHHHHH
Q 044773 219 -----CTE---------PGWFRVCFA-NMSEDTLKLSMQRLKAFVDSI 251 (289)
Q Consensus 219 -----~~~---------~~~~Ris~~-~~~~e~l~~~l~~l~~~l~~~ 251 (289)
... ...+.|-+. .++.++++..++.+.++++++
T Consensus 324 ~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 324 YQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp HHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 001 134555442 369999999999999998863
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.19 E-value=0.0001 Score=63.28 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred hhhCCCccEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCCCCCccCCCCccChhhhhhccccccCCCCCceE
Q 044773 6 QKRHLKVKGVLVTNPSNPLGTTMSRNELNLLVNFITEKNIHLISDEIYSGTVFSSPGFVSIMEILKDRNCENTEVWNRVH 85 (289)
Q Consensus 6 ~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i 85 (289)
....+++++|++++. .|...+ ++++.++|+++++.||+|.+++........ .+.. ..+..+
T Consensus 106 ~~~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~~~~--~~G~-----------~gd~~~ 166 (374)
T d1o69a_ 106 KECEKKPKALILTHL---YGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNK--ALGT-----------FGEFGV 166 (374)
T ss_dssp HHCSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTS-----------SSSEEE
T ss_pred hhccccccccccccc---ccchhh---hHHHHHHhhccCcchhhhhhhhhcceECCe--ecCC-----------CCceEE
Confidence 345567899888866 455566 999999999999999999999853211111 1000 113333
Q ss_pred EEecCccccCCCCceEEEEEecCHHHHHHHHhc
Q 044773 86 IVYSLSKDLGLPGFRVGAIYSNDDTVVAAATKM 118 (289)
Q Consensus 86 ~i~s~sK~~g~~G~r~G~i~~~~~~~~~~~~~~ 118 (289)
+-...+|.++..| -|.+++.++.+.+.+..+
T Consensus 167 fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~ 197 (374)
T d1o69a_ 167 YSYNGNKIITTSG--GGMLIGKNKEKIEKARFY 197 (374)
T ss_dssp EECCTTSSSCCSS--CEEEEESCHHHHHHHHHH
T ss_pred EeccCcccccccc--ceeehhhhHHHHHhhccc
Confidence 3444468886333 388999888887766543
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=81.97 E-value=0.83 Score=37.37 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=38.5
Q ss_pred CccEEEEeCC-CCCCccCC----------------CHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 044773 11 KVKGVLVTNP-SNPLGTTM----------------SRNELNLLVNFITEKNIHLISDEIYSGT 56 (289)
Q Consensus 11 ~~~~i~l~~p-~NPtG~~~----------------~~~~l~~l~~~~~~~~~~li~Dea~~~~ 56 (289)
+..+|.|+.| .||.|..+ +.++++++++.|++.|+.||.|-|+.+.
T Consensus 28 G~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~ 90 (354)
T d1g94a2 28 GYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHM 90 (354)
T ss_dssp TCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEE
T ss_pred CCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeecccc
Confidence 6888888877 47776532 5889999999999999999999998754
|