Citrus Sinensis ID: 044779

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MSFNVSGLPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKYESRINSAYGAEDFPPAVSKGKGQQ
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHcccEEccccccEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHcHHHHHHHcccccccccccccccccccccccccccccc
msfnvsglpenllpddaspewmskaDNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMihfwgrpdvsldenFLLSRAfagylpnatMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSytigaysiwcpegwlaklgiidYSGGFVIHLssgvagftaaywvgpratkdrerfppnNILLMLAGAGllwmgwtgfnggdpynagtDASLAVLNTHVCTATSLLTWLILDILffgkpsvigatqGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGgilagffanpklnriFYLVDDWEHYIGLAYGfqsnrasagFRQMGVQLLGISFVIALNIFTTSVICVLIRIVvplrltdeelqtgddaihgeeayalwgdgekyesrinsaygaedfppavskgkgqq
msfnvsglpenllpddASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRatkdrerfppNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEelqtgddaihGEEAYALWGDGEKYESRINSAygaedfppavskgkgqq
MSFNVSGLPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFaaitliliagallgRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNIllmlagagllwmgwTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKYESRINSAYGAEDFPPAVSKGKGQQ
************************ADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKY************************
***N**GLPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGD****************************
********PENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKYESRINSAYGAEDFP**********
****VSGLPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGE**************************
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFNVSGLPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKYESRINSAYGAEDFPPAVSKGKGQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q84KJ6498 Ammonium transporter 3 me yes no 0.909 0.871 0.638 1e-167
Q69T29480 Ammonium transporter 3 me no no 0.909 0.904 0.619 1e-158
Q851M9479 Ammonium transporter 3 me no no 0.890 0.887 0.624 1e-155
Q84KJ7486 Ammonium transporter 2 me no no 0.897 0.880 0.611 1e-150
Q9M6N7475 Ammonium transporter 2 OS yes no 0.895 0.898 0.623 1e-150
Q8S230501 Ammonium transporter 2 me no no 0.911 0.868 0.576 1e-149
Q8S233497 Ammonium transporter 2 me no no 0.895 0.859 0.589 1e-145
Q10CV4299 Putative ammonium transpo no no 0.469 0.749 0.564 9e-70
O26759412 Putative ammonium transpo yes no 0.832 0.963 0.365 1e-60
O66515423 Ammonia channel OS=Aquife yes no 0.836 0.943 0.354 5e-60
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  589 bits (1518), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/470 (63%), Positives = 358/470 (76%), Gaps = 36/470 (7%)

Query: 17  ASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCW 76
           A PEW++K DNAWQ+ +ATLVG+QSVPGLVILYGSIVKKKWAVNSAFMALYAFAAV +CW
Sbjct: 18  AVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVWLCW 77

Query: 77  VGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRA--------FAG---------------Y 113
           V WGY MSFG K++ FWG+   +L ++FLL++A        + G                
Sbjct: 78  VTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPL 137

Query: 114 LPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWL 173
            P ATMVYFQ VFAAITLIL+AG+LLGRMN  AWMLFVPLWLTFSYT+GA+S+W   G+L
Sbjct: 138 YPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTFSYTVGAFSLWG-GGFL 196

Query: 174 AKLGIIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWT 233
              G++DYSGG+VIHLSSGVAGFTAAYWVGPR+TKDRERFPPNN+LLML GAG+LWMGW 
Sbjct: 197 FHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNVLLMLTGAGILWMGWA 256

Query: 234 GFNGGDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCIT 293
           GFNGGDPY+A  D+SLAVLNT++C ATSLL W  LD++FF KPSVIGA QGMITGLVCIT
Sbjct: 257 GFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCIT 316

Query: 294 PAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILA 353
           P AG+VQGWAAI+MG++SGSIPW+TMMV+HK+  +L++VDDT+ VFHTHAVAG LGG   
Sbjct: 317 PGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGVFHTHAVAGFLGGATT 376

Query: 354 GFFANPKLNRIFYLVDDWE--HYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTT 411
           G FA P L  +F  V +     Y G   G Q  R          Q+ G  F+I  N+  T
Sbjct: 377 GLFAEPVLCSLFLPVTNSRGAFYPGRGGGLQFVR----------QVAGALFIICWNVVVT 426

Query: 412 SVICVLIRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKYESRINSAY 461
           S++C+ +R VVPLR+ +EEL  GDDA+HGEEAYALWGDGEKY+S  +  Y
Sbjct: 427 SLVCLAVRAVVPLRMPEEELAIGDDAVHGEEAYALWGDGEKYDSTKHGWY 476
Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q10CV4|AMT41_ORYSJ Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1 Back     alignment and function description
>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
255559879479 ammonium transporter, putative [Ricinus 0.976 0.972 0.848 0.0
225437174472 PREDICTED: ammonium transporter 3 member 0.983 0.993 0.820 0.0
224066329448 ammonium transporter [Populus trichocarp 0.922 0.982 0.888 0.0
224082702441 ammonium transporter [Populus trichocarp 0.922 0.997 0.868 0.0
225451334473 PREDICTED: ammonium transporter 3 member 0.974 0.983 0.744 0.0
225430212482 PREDICTED: ammonium transporter 3 member 0.987 0.977 0.730 0.0
147856666482 hypothetical protein VITISV_020759 [Viti 0.987 0.977 0.728 0.0
356502784471 PREDICTED: ammonium transporter 3 member 0.945 0.957 0.789 0.0
296082001485 unnamed protein product [Vitis vinifera] 0.947 0.931 0.720 0.0
224123404460 ammonium transporter [Populus trichocarp 0.953 0.989 0.736 0.0
>gi|255559879|ref|XP_002520958.1| ammonium transporter, putative [Ricinus communis] gi|223539795|gb|EEF41375.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/468 (84%), Positives = 430/468 (91%), Gaps = 2/468 (0%)

Query: 8   LPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALY 67
           LP  L+PDDASP+W+SKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALY
Sbjct: 7   LPSGLMPDDASPDWLSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALY 66

Query: 68  AFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFA 127
           AFAAVLVCWVGWGY+M+FG  M+ F GRPDV++D+ +LL  AF G  PNATM+YFQFVFA
Sbjct: 67  AFAAVLVCWVGWGYRMAFGHDMLPFLGRPDVAMDQKYLLGIAFLGKFPNATMIYFQFVFA 126

Query: 128 AITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVI 187
           AITLIL+AGALLGRMNFHAWMLFVPLWLTFSYTI AYSIWCP GWLAK+GIIDYSGG+VI
Sbjct: 127 AITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGGYVI 186

Query: 188 HLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDA 247
           HLSSGVAGFTAAYWVGPRA KDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPY+   DA
Sbjct: 187 HLSSGVAGFTAAYWVGPRANKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVSVDA 246

Query: 248 SLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILM 307
           SLAVLNTHVCTATSLLTWL+LDI+FFGKPS+IGATQGMITGLVCITPAAGVVQGWAAILM
Sbjct: 247 SLAVLNTHVCTATSLLTWLLLDIIFFGKPSIIGATQGMITGLVCITPAAGVVQGWAAILM 306

Query: 308 GMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYL 367
           G+MSGSIPWY+MMVLHKKI +LK+VDDTMAVFHTHAVAGSLGGIL GFFA PKLNRIFYL
Sbjct: 307 GLMSGSIPWYSMMVLHKKIWLLKQVDDTMAVFHTHAVAGSLGGILTGFFAEPKLNRIFYL 366

Query: 368 VDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLT 427
           VD WEHYIGLAYG Q+ R +AGF+QMG+QLLGI FVI  NIFTTSVIC LI++V+PLRL 
Sbjct: 367 VDGWEHYIGLAYGLQTGRTTAGFKQMGIQLLGILFVILTNIFTTSVICFLIKLVIPLRLA 426

Query: 428 DEELQTGDDAIHGEEAYALWGDGEKYESRINSAYGAEDFPPAVSKGKG 475
           D+ELQ GDDAIHGEEAYALWGDGEKYES+ NS +  ED+P AV KG G
Sbjct: 427 DDELQIGDDAIHGEEAYALWGDGEKYESKHNSVF--EDYPQAVPKGGG 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437174|ref|XP_002274875.1| PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera] gi|296084499|emb|CBI25058.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224066329|ref|XP_002302084.1| ammonium transporter [Populus trichocarpa] gi|222843810|gb|EEE81357.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082702|ref|XP_002306803.1| ammonium transporter [Populus trichocarpa] gi|222856252|gb|EEE93799.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451334|ref|XP_002274524.1| PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera] gi|298204858|emb|CBI34165.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430212|ref|XP_002282475.1| PREDICTED: ammonium transporter 3 member 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856666|emb|CAN80314.1| hypothetical protein VITISV_020759 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502784|ref|XP_003520196.1| PREDICTED: ammonium transporter 3 member 1-like [Glycine max] Back     alignment and taxonomy information
>gi|296082001|emb|CBI21006.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123404|ref|XP_002319070.1| ammonium transporter [Populus trichocarpa] gi|222857446|gb|EEE94993.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2042917475 AMT2 "ammonium transporter 2" 0.920 0.924 0.561 8.8e-134
UNIPROTKB|Q84KJ7486 AMT2-1 "Ammonium transporter 2 0.897 0.880 0.565 1e-132
UNIPROTKB|P69681428 amtB "AmtB" [Escherichia coli 0.714 0.796 0.327 1.3e-51
TIGR_CMR|CPS_3995445 CPS_3995 "ammonium transporter 0.849 0.910 0.306 4.6e-50
TIGR_CMR|DET_1125408 DET_1125 "ammonium transporter 0.691 0.808 0.319 2e-47
TIGR_CMR|SPO_2093431 SPO_2093 "ammonium transporter 0.668 0.740 0.305 8.6e-47
SGD|S000005086499 MEP2 "Ammonium permease involv 0.897 0.857 0.289 9.1e-45
TIGR_CMR|GSU_0940489 GSU_0940 "ammonium transporter 0.700 0.683 0.319 1.2e-43
UNIPROTKB|G4MMA1485 MGG_16392 "Uncharacterized pro 0.842 0.828 0.306 1.5e-42
POMBASE|SPCPB1C11.01497 amt1 "ammonium transporter Amt 0.897 0.861 0.283 1.5e-42
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 257/458 (56%), Positives = 325/458 (70%)

Query:     5 VSGLPENLLPDDASPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFM 64
             ++G  +  LP+   PEW++K DNAWQLTAATLVGLQS+PGLVILY SIVKKKWAVNSAFM
Sbjct:     1 MAGAYDPSLPE--VPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFM 58

Query:    65 ALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLDENFLLSRA-------FAGYLPNA 117
             ALYAFAAVL+CWV   Y+M+FG++++ FWG+   + D+ +L  +A        A Y P A
Sbjct:    59 ALYAFAAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSNVAAPYFPMA 118

Query:   118 TMVYFQFVFXXXXXXXXXXXXXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLG 177
             T+VYFQF F              RMN  AWM FVPLWL FSYT+GAYSIW   G+L + G
Sbjct:   119 TLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIW-GGGFLYQWG 177

Query:   178 IIDYSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNG 237
             +IDYSGG+VIHLSSGVAGF AAYWVGPR   DRERFPPNN+              +GFNG
Sbjct:   178 VIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGFNG 237

Query:   238 GDPYNAGTDASLAVLNTHVCTATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAG 297
             G PY A   +S+AVLNT++  ATSLL W  LD++FFGKPSVIGA QGM+TGL  +TP AG
Sbjct:   238 GAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPGAG 297

Query:   298 VVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFA 357
             ++Q WAAI++G++SG+ PW +MM++HKK  +L++VDDT+AVF+THAVAG LGGI+ G FA
Sbjct:   298 LIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGLFA 357

Query:   358 NPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVL 417
             +P L     LV       G  YG   N    G +Q+  QL G +F+   N+ +T++I + 
Sbjct:   358 HPDL---CVLVLPLPATRGAFYG--GN----GGKQLLKQLAGAAFIAVWNVVSTTIILLA 408

Query:   418 IRIVVPLRLTDEELQTGDDAIHGEEAYALWGDGEKYES 455
             IR+ +PLR+ +EEL  GDDA HGEEAYALWGDGEK+++
Sbjct:   409 IRVFIPLRMAEEELGIGDDAAHGEEAYALWGDGEKFDA 446
GO:0005737 "cytoplasm" evidence=ISM
GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS
GO:0015695 "organic cation transport" evidence=ISS;IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IDA
GO:0015696 "ammonium transport" evidence=RCA;TAS
GO:0009624 "response to nematode" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0007154 "cell communication" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009581 "detection of external stimulus" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0051707 "response to other organism" evidence=RCA
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
SGD|S000005086 MEP2 "Ammonium permease involved in regulation of pseudohyphal growth" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0940 GSU_0940 "ammonium transporter" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|G4MMA1 MGG_16392 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M6N7AMT2_ARATHNo assigned EC number0.62380.89510.8989yesno
Q9BLG4AMT1_DICDINo assigned EC number0.30900.84060.8660yesno
P63520AMT_MYCBONo assigned EC number0.32650.84480.8448yesno
Q07429NRGA_BACSUNo assigned EC number0.33560.82590.9752yesno
O66515AMT_AQUAENo assigned EC number0.35400.83640.9432yesno
P41948MEP2_YEASTNo assigned EC number0.31270.85950.8216yesno
P63519AMT_MYCTUNo assigned EC number0.32650.84480.8448yesno
Q84KJ6AMT31_ORYSJNo assigned EC number0.63820.90980.8714yesno
O26759Y663_METTHNo assigned EC number0.36530.83220.9635yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-116
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-109
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 3e-73
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 9e-70
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 5e-26
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  346 bits (890), Expect = e-116
 Identities = 156/424 (36%), Positives = 227/424 (53%), Gaps = 27/424 (6%)

Query: 27  NAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFG 86
            AW L AA LV     PG  +LY  +V+ K  +N     L  FA   + W  +GY ++FG
Sbjct: 1   TAWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFG 59

Query: 87  KKMIH--FWGRPDVSLDEN-FLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMN 143
           +      F G     L    +    + AG LP+     FQ +FAAI   +I+GA+  RM 
Sbjct: 60  EDNPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMK 119

Query: 144 FHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVG 203
           F A++LF  LW T  Y   A+ +W   GWL KLG++D++GG V+H+  GVAG  AA  +G
Sbjct: 120 FSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLG 179

Query: 204 PRATKDRE--RFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATS 261
           PR  +        P+N+ L++ G  +LW GW GFN G    A   A+ A +NT++  A  
Sbjct: 180 PRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAG 239

Query: 262 LLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMV 321
            LTWL++D L  GKP+++GA  G++ GLV ITP  GVV  W AI++G+++G + +  +  
Sbjct: 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSK 299

Query: 322 LHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGF 381
           L KK+    ++DD +  F  H V G  G I  G FA PK+  +           GL  G 
Sbjct: 300 LKKKL----KIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTG--------GLLGG- 346

Query: 382 QSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDD-AIHG 440
                    +Q+GVQL+GI+ +IA     T +I  ++   + LR+++EE + G D A HG
Sbjct: 347 -------NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHG 399

Query: 441 EEAY 444
           E AY
Sbjct: 400 EFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 82.36
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-110  Score=850.68  Aligned_cols=403  Identities=40%  Similarity=0.723  Sum_probs=377.1

Q ss_pred             cccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccccc
Q 044779           22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLD  101 (477)
Q Consensus        22 ~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~~  101 (477)
                      +|..|+.|+|+|+.|| ++|||||+|+|+|++|+||++|+++|++.++++++++|+++||+++|+++.++|+|+...++.
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~   79 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFL   79 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhc
Confidence            4689999999999999 999999999999999999999999999999999999999999999999866789999766544


Q ss_pred             chhhccccc-CCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCcee
Q 044779          102 ENFLLSRAF-AGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIID  180 (477)
Q Consensus       102 ~~~~~~~~~-~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~D  180 (477)
                      .+...++.. ..++|+.++++||++||++|++|++|+++||+|+.+|++|+++|.+++|||++||+|+++|||.++|++|
T Consensus        80 ~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~D  159 (409)
T COG0004          80 NGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALD  159 (409)
T ss_pred             cCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCcee
Confidence            333222221 2468999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             cCCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHH
Q 044779          181 YSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTAT  260 (477)
Q Consensus       181 faG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~  260 (477)
                      ||||+|||..+|+.||++++++|||+++.+++++|||++++++|+.+||+||+|||+||++..+.++..+++||++|+++
T Consensus       160 FAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~  239 (409)
T COG0004         160 FAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA  239 (409)
T ss_pred             cCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCccc
Q 044779          261 SLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFH  340 (477)
Q Consensus       261 g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~  340 (477)
                      ++++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+++.++++||    +|+|||+|+++
T Consensus       240 g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f~  315 (409)
T COG0004         240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVFG  315 (409)
T ss_pred             HHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccccee
Confidence            99999999999999999999999999999999999999999999999999999999999998886    89999999999


Q ss_pred             ccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779          341 THAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRI  420 (477)
Q Consensus       341 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~  420 (477)
                      +||++|+||++++|+|++++..       ...   |++|+        +++|++.|+.+++++.+|++++++++++++|+
T Consensus       316 vHGvgGi~G~i~~GiFa~~~~~-------~~~---G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~  377 (409)
T COG0004         316 VHGVGGIVGAILTGIFAAPAVG-------GGG---GLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKL  377 (409)
T ss_pred             ccchhhHHHHHHHHHhcCcccc-------ccC---ccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998641       112   66653        35999999999999999999999999999999


Q ss_pred             hcCCCCChHHHhcC-Chhhhchhccccc
Q 044779          421 VVPLRLTDEELQTG-DDAIHGEEAYALW  447 (477)
Q Consensus       421 ~~~LRv~~e~E~~G-D~~~hg~~ay~~~  447 (477)
                      +.+||++||||++| |..||||++|++.
T Consensus       378 ~~gLRvs~eeE~~GlD~~~Hge~aY~~~  405 (409)
T COG0004         378 IIGLRVSEEEELEGLDISEHGESAYSEE  405 (409)
T ss_pred             ccCCCCCHHHHhhCCChHHhcccccccc
Confidence            99999999999999 9999999999864

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 4e-47
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 4e-47
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 5e-47
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 2e-46
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 4e-46
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 5e-46
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 5e-46
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 6e-46
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 6e-46
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 7e-46
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 7e-46
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 4e-45
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 9e-45
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 4e-41
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 2e-38
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (470), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 208/428 (48%), Gaps = 25/428 (5%)
Query: 18  SPEWMSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWV 77
           +P    KADNA+ +    LV   ++PG+ + YG +++ K  ++        FA V + WV
Sbjct: 1   APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78  GWGYQMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFXXXXXXXXXXX 137
            +GY ++FG+   +F+G  +  + +N  L+ A  G +     V FQ  F           
Sbjct: 61  VYGYSLAFGEGN-NFFGNINWLMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 138 XXXRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFT 197
              R+ F A ++FV +WLT SY   A+ +W   G LA  G +D++GG V+H+++ +AG  
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 198 AAYWVGPRATKDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYNAGTDASLAVLNTHVC 257
            AY +G R    +E F P+N+               GFN G    A   A+LA +NT V 
Sbjct: 178 GAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVA 237
Query: 258 TATSLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWY 317
           TA ++L W+  +    GKPS++GA  G I GLV +TPA G +    A+++G+++G    +
Sbjct: 238 TAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297
Query: 318 TMMVLHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGL 377
            + +L +    L RVDD   VF  H V G +G I+ G FA   L             +G 
Sbjct: 298 GVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----------VGF 342
Query: 378 AYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTGDDA 437
           A G           Q+ VQL  I+  I  +     +   L  + V LR+ +E+ + G D 
Sbjct: 343 AEGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDV 396
Query: 438 -IHGEEAY 444
             HGE AY
Sbjct: 397 NSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-105
1u7g_A385 Probable ammonium transporter; right handed helica 1e-101
3b9w_A407 Ammonium transporter family; membrane protein, amm 2e-68
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 2e-58
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
 Score =  319 bits (819), Expect = e-105
 Identities = 135/433 (31%), Positives = 214/433 (49%), Gaps = 35/433 (8%)

Query: 22  MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGY 81
           MS  + AW L +  LV +  VPG+   Y  +V++K AVN   ++  +    ++ W+ +GY
Sbjct: 1   MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59

Query: 82  QMSFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGR 141
            +SFG  +    G  +       LLS        +   + +Q +FAA+T+ ++  A+  R
Sbjct: 60  SVSFGNDISGIIGGLN-----YALLS---GVKGEDLLFMMYQMMFAAVTIAILTSAIAER 111

Query: 142 MNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYW 201
               +++L   LWLTF Y   A+ +W   GWLAKLG +D++GG V+H+SSG A    A  
Sbjct: 112 AKVSSFILLSALWLTFVYAPFAHWLW-GGGWLAKLGALDFAGGMVVHISSGFAALAVAMT 170

Query: 202 VGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATS 261
           +G RA  +     P++I L L GA LLW GW GFNGG    A   A  AV+ T+   A +
Sbjct: 171 IGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA 230

Query: 262 LLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMV 321
              W+++  +  GKP  +G   G I GL  ITPAAG V    AI++G+++G + +  M  
Sbjct: 231 GFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDF 289

Query: 322 LHKKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGF 381
             K     K++D+++  +  H + G  G +  G  ANP++N           Y GL +G 
Sbjct: 290 RIK-----KKIDESLDAWAIHGIGGLWGSVAVGILANPEVN----------GYAGLLFG- 333

Query: 382 QSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRLTDEELQTG-DDAIHG 440
                    + +  QL+ ++   A     T ++   +   V LR++ +E   G D + H 
Sbjct: 334 -------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHE 386

Query: 441 EEAYALWGDGEKY 453
           E AY L      +
Sbjct: 387 EVAYTLEHHHHHH 399
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=7.6e-108  Score=847.46  Aligned_cols=394  Identities=34%  Similarity=0.630  Sum_probs=363.6

Q ss_pred             cccchhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCccccc
Q 044779           22 MSKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSLD  101 (477)
Q Consensus        22 ~~~~d~~w~L~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~~  101 (477)
                      +|..|+.|+|+|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|+|..++++.
T Consensus         1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~   79 (399)
T 2b2h_A            1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALL   79 (399)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGG
T ss_pred             CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhc
Confidence            3678999999999999 999999999999999999999999999999999999999999999999865689998554432


Q ss_pred             chhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCceec
Q 044779          102 ENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDY  181 (477)
Q Consensus       102 ~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~Df  181 (477)
                      .+..        .....+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++||
T Consensus        80 ~~~~--------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~DF  150 (399)
T 2b2h_A           80 SGVK--------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALDF  150 (399)
T ss_dssp             TTCC--------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCCS
T ss_pred             cCCC--------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCccc
Confidence            2210        0126789999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             CCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHHH
Q 044779          182 SGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATS  261 (477)
Q Consensus       182 aG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g  261 (477)
                      |||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..+.++.++++||++|+++|
T Consensus       151 AGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag  230 (399)
T 2b2h_A          151 AGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA  230 (399)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999888899999999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCcccc
Q 044779          262 LLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFHT  341 (477)
Q Consensus       262 ~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~v  341 (477)
                      +++|+++++++ ||+|+..++||+|||||||||+|++++||+|++||+++|++|+++. .+++|    +|||||||++++
T Consensus       231 ~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~k----l~iDD~l~a~~v  304 (399)
T 2b2h_A          231 GFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIK----KKIDESLDAWAI  304 (399)
T ss_dssp             HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHH----TTCCCTTCHHHH
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHH----cCCCCCCCceec
Confidence            99999999999 9999999999999999999999999999999999999999999998 44444    899999999999


Q ss_pred             cccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044779          342 HAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIV  421 (477)
Q Consensus       342 Hg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~~  421 (477)
                      ||+||+||++++++|++++..+       .+   |++|+        +++|++.|+++++++++|+++.++++++++|++
T Consensus       305 Hgv~Gi~G~l~~glfa~~~~~g-------~~---Gl~~g--------~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~  366 (399)
T 2b2h_A          305 HGIGGLWGSVAVGILANPEVNG-------YA---GLLFG--------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAA  366 (399)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHS-------CC---CGGGT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHccccccC-------CC---ccccC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999875421       12   78885        349999999999999999999999999999999


Q ss_pred             cCCCCChHHHhcC-ChhhhchhcccccCC
Q 044779          422 VPLRLTDEELQTG-DDAIHGEEAYALWGD  449 (477)
Q Consensus       422 ~~LRv~~e~E~~G-D~~~hg~~ay~~~~~  449 (477)
                      .+||+++|||++| |.+||||++||+.++
T Consensus       367 ~glRv~~e~E~~GlD~~~hg~~ay~~~~~  395 (399)
T 2b2h_A          367 VGLRVSSQEEYVGLDLSQHEEVAYTLEHH  395 (399)
T ss_dssp             TCSBCCHHHHHHCHHHHHHCCCSCC----
T ss_pred             ccCCCCHHHHHhCCCHHHhCcccCCcccc
Confidence            9999999999999 999999999997654
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 7e-56
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  188 bits (479), Expect = 7e-56
 Identities = 129/403 (32%), Positives = 199/403 (49%), Gaps = 24/403 (5%)

Query: 24  KADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQM 83
           KADNA+ +    LV   ++PG+ + YG +++ K  ++        FA V + WV +GY +
Sbjct: 5   KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSL 64

Query: 84  SFGKKMIHFWGRPDVSLDENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMN 143
           + G+    F     + L    L   A  G +     V FQ  FA IT+ LI GAL  R+ 
Sbjct: 65  ASGEGNNFFGNINWLMLKNIEL--TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIR 122

Query: 144 FHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIIDYSGGFVIHLSSGVAGFTAAYWVG 203
           F A ++FV +WLT SY      +    G LA  G +D++GG V+H+++ +AG   AY +G
Sbjct: 123 FPAVLIFVVVWLTLSYIP-IAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIG 181

Query: 204 PRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTATSLL 263
            R    +E F P+N+ ++  G  +L++GW GFN G    A   A+LA +NT V TA ++L
Sbjct: 182 KRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 241

Query: 264 TWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLH 323
            W+  +    G PS++GA  G I GLV +TPA G +    A+++G+++G    + + +L 
Sbjct: 242 GWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 301

Query: 324 KKIPMLKRVDDTMAVFHTHAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQS 383
                L RVDD   VF  H V G +G I+ G FA   L  + +                 
Sbjct: 302 ----RLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVT------------ 345

Query: 384 NRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRIVVPLRL 426
                   Q+ VQL  I+  I  +     +   L  + V LR+
Sbjct: 346 -----MGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-92  Score=729.94  Aligned_cols=380  Identities=35%  Similarity=0.590  Sum_probs=349.2

Q ss_pred             cccchhHHHHHHHHHHHHHhH-HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccCcccc
Q 044779           22 MSKADNAWQLTAATLVGLQSV-PGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKMIHFWGRPDVSL  100 (477)
Q Consensus        22 ~~~~d~~w~L~~~~lV~~~m~-~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafg~~~~~fiG~~~~~~  100 (477)
                      .|+.|+.|+|+|++|| ++|| |||+++|+|+||+||++|+++||++++++++++||++||+++||++ ++++|...+++
T Consensus         3 ~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           3 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             cCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            3689999999999999 8887 8999999999999999999999999999999999999999999987 46677766554


Q ss_pred             cchhhcccccCCCccchhhhHhHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcceeeeeecCcccccccCcee
Q 044779          101 DENFLLSRAFAGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLAKLGIID  180 (477)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~D  180 (477)
                      ..+...+ .....+|...+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.++|++|
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~-~g~l~~lG~~D  158 (383)
T d1u7ga_          81 LKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGALD  158 (383)
T ss_dssp             GTTCCTT-CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTCCC
T ss_pred             ccCcccc-cccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheecC-CCccccCCcee
Confidence            4433211 123457889999999999999999999999999999999999999999999999999997 99999999999


Q ss_pred             cCCCchhhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCCCcchhhHHHHHHHHHHH
Q 044779          181 YSGGFVIHLSSGVAGFTAAYWVGPRATKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYNAGTDASLAVLNTHVCTAT  260 (477)
Q Consensus       181 faG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hs~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~  260 (477)
                      ||||++||++||+++|++++++|||++|++++.+|||++++.+|+++||+||+|||+||+...+..+.++++||++|+++
T Consensus       159 faGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~  238 (383)
T d1u7ga_         159 FAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAA  238 (383)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhHHHHHHHHHhhhcCcccccccccCccc
Q 044779          261 SLLTWLILDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWYTMMVLHKKIPMLKRVDDTMAVFH  340 (477)
Q Consensus       261 g~lt~~~~~~~~~~k~s~~~~~nG~LaGlVaIta~~~~v~pw~A~iiG~vag~i~~~~~~~l~~~l~~~l~IDD~~~v~~  340 (477)
                      ++++++..+++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++|    +|||||+|+++
T Consensus       239 ~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~----~~iDD~~~~~~  314 (383)
T d1u7ga_         239 AILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVFG  314 (383)
T ss_dssp             HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhh----cccccccceEe
Confidence            99999999999999999999999999999999999999999999999999999999999988765    89999999999


Q ss_pred             ccccchhhhhhhhhhhcCccccchhcccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044779          341 THAVAGSLGGILAGFFANPKLNRIFYLVDDWEHYIGLAYGFQSNRASAGFRQMGVQLLGISFVIALNIFTTSVICVLIRI  420 (477)
Q Consensus       341 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~i~~~ilk~  420 (477)
                      +|++||+||++++|+|+.++.++             ..+..+    ....+|+++|++|++++++|++++++++++++|+
T Consensus       315 vHg~~Gi~G~l~~glfa~~~~~g-------------~~~~~~----~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~  377 (383)
T d1u7ga_         315 VHGVCGIVGCIMTGIFAASSLGG-------------VGFAEG----VTMGHQLLVQLESIAITIVWSGVVAFIGYKLADL  377 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTSGGGTC-------------CCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhHHHHHHHHHHhcCccccc-------------cccccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999876432             222110    1134999999999999999999999999999999


Q ss_pred             hcCCCC
Q 044779          421 VVPLRL  426 (477)
Q Consensus       421 ~~~LRv  426 (477)
                      +.+|||
T Consensus       378 ~~gLRV  383 (383)
T d1u7ga_         378 TVGLRV  383 (383)
T ss_dssp             HTCSBC
T ss_pred             CcCCcC
Confidence            999997