Citrus Sinensis ID: 044784

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
PPEPTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIFNY
ccccccccccccHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEcccccccccccccEEEcccccccEEEEcccccHHHHHHHHHHcccccEEcccccccEEccccccccccccccccccccccEEEEEEEEccccEEEccccccccHHHHHHccccccEEEEEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHcccccEEEEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHcHHHHHHHHcccccccccccccccccccHHcHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHcHHHHHHHHHHHccccccccccccccccc
ccccccEEcccHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEcccHHHHcccccccEEEccccccEEEcccHHHHHHHHHHHHHccccccccccccEEEEccEccccccccccccccccccccEEEEEEEcccEEEEEcccccHHHHHHHHccccccEEEEEEEEEcccccHHEEEEEEEEccHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccccccccHHHccccccEEEEEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHccccccccccHHcEccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccEccccccHHEEHHHHcccccccHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHcHHHHHHHHHHHHccHHHHcccccccccc
ppeptdnlrtdpgaiklasidyghiikekpfavlyptsvddIRTLIYLSYNSLFSYTIAAkgqahstwgqaqandgVVVQMNSLnrfrngtgilisgdrssgfyadvggeQLWIDVLNATltrglspvswtdylyptvggtlsnagisghtyqkgpqitnVLELDvltgkgefvtcspqkdsELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSdfssfstdqetlisttgpsdkvmpdfleghllmnqspldfypqsqrRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKgflpgfvfekdVTYLQFLNRVHDQEIELRKkglwdiphpwlnifipksritdfdngVFRNILLkrnftsstvlvypLLRSKWDERMSAVIAAEEEVFYFVGFLdasadnweafdnkNKDILQFCVNAGIKFkqylghhatkeEWIIHFGSKWNTFQqrktrfdprmilspgqrifny
ppeptdnlrtdpgaIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSdfssfstdqetlisttgpsDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRkkglwdiphpWLNIFIPKSRITDFDNGVFRNILlkrnftsstvlvyPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRktrfdprmilspgqrifny
PPEPTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIFNY
*************AIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLI********VMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRF***************
**EPTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIFNY
********RTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIFNY
*PEPTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIFN*
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PPEPTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLMNQSPLDFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIFNY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query482 2.2.26 [Sep-21-2011]
Q9LTS3523 Cytokinin dehydrogenase 3 yes no 0.941 0.868 0.545 1e-142
Q9FUJ2524 Cytokinin dehydrogenase 4 no no 0.960 0.883 0.506 1e-136
Q9FUJ3501 Cytokinin dehydrogenase 2 no no 0.956 0.920 0.501 1e-134
Q67YU0540 Cytokinin dehydrogenase 5 no no 0.948 0.846 0.476 1e-123
Q9T0N8534 Cytokinin dehydrogenase 1 N/A no 0.973 0.878 0.472 1e-119
Q6YW51527 Cytokinin dehydrogenase 6 yes no 0.977 0.893 0.455 1e-119
Q6YW50524 Cytokinin dehydrogenase 7 yes no 0.970 0.893 0.457 1e-119
Q0JQ12532 Cytokinin dehydrogenase 1 yes no 0.979 0.887 0.461 1e-118
Q5Z620550 Cytokinin dehydrogenase 1 yes no 0.966 0.847 0.467 1e-117
Q5ZAY9534 Cytokinin dehydrogenase 5 yes no 0.973 0.878 0.464 1e-115
>sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1 Back     alignment and function desciption
 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/475 (54%), Positives = 337/475 (70%), Gaps = 21/475 (4%)

Query: 15  IKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQAN 74
           ++ A+ D+GH+ K  P AVL P+SV+DI  LI LS++S  S+ +AA+G  HS  GQA A 
Sbjct: 55  VESAATDFGHVTKIFPSAVLIPSSVEDITDLIKLSFDSQLSFPLAARGHGHSHRGQASAK 114

Query: 75  DGVVVQMNSL-NRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDY 133
           DGVVV M S+ NR R   GI +S    +  Y DV    LWI+VLN TL  GL+PVSWTDY
Sbjct: 115 DGVVVNMRSMVNRDR---GIKVS---RTCLYVDVDAAWLWIEVLNKTLELGLTPVSWTDY 168

Query: 134 LYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLG 193
           LY TVGGTLSN GISG T++ GPQITNVLE+DV+TGKGE  TCS   +S+LF+AVLGGLG
Sbjct: 169 LYLTVGGTLSNGGISGQTFRYGPQITNVLEMDVITGKGEIATCSKDMNSDLFFAVLGGLG 228

Query: 194 QFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDFLEGHLLM 253
           QFGIITRARI L  A KR KWLR LY DFS F+ DQE +IS T   D V  DFLEG +++
Sbjct: 229 QFGIITRARIKLEVAPKRAKWLRFLYIDFSEFTRDQERVISKT---DGV--DFLEGSIMV 283

Query: 254 NQSPLD-----FYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQM--LKSLKG 306
           +  P D     +YP S   +I  +V ++ ++Y +EVV YYD  ++    ++M  L     
Sbjct: 284 DHGPPDNWRSTYYPPSDHLRIASMVKRHRVIYCLEVVKYYDETSQYTVNEEMEELSDSLN 343

Query: 307 FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNI 366
            + GF++EKDVTY+ FLNRV   E+ L+ KG WD+PHPWLN+F+PK++I+ FD+GVF+ I
Sbjct: 344 HVRGFMYEKDVTYMDFLNRVRTGELNLKSKGQWDVPHPWLNLFVPKTQISKFDDGVFKGI 403

Query: 367 LLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFL-DASADNWEAFDNKNKDI 425
           +L+ N TS  VLVYP+ R+KW++RMSA I  EE+VFY VGFL  A  DNWEAFD +N +I
Sbjct: 404 ILRNNITSGPVLVYPMNRNKWNDRMSAAI-PEEDVFYAVGFLRSAGFDNWEAFDQENMEI 462

Query: 426 LQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQRIF 480
           L+FC +A +   QYL +H+++E W+ HFG +WN F +RK ++DP+MILSPGQ IF
Sbjct: 463 LKFCEDANMGVIQYLPYHSSQEGWVRHFGPRWNIFVERKYKYDPKMILSPGQNIF 517
Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: 2
>sp|Q9FUJ2|CKX4_ARATH Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana GN=CKX4 PE=1 SV=2 Back     alignment and function description
>sp|Q9FUJ3|CKX2_ARATH Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 Back     alignment and function description
>sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9T0N8|CKX1_MAIZE Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1 SV=2 Back     alignment and function description
>sp|Q6YW51|CKX6_ORYSJ Cytokinin dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CKX6 PE=3 SV=1 Back     alignment and function description
>sp|Q6YW50|CKX7_ORYSJ Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CKX7 PE=3 SV=1 Back     alignment and function description
>sp|Q0JQ12|CKX1_ORYSJ Cytokinin dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CKX1 PE=2 SV=2 Back     alignment and function description
>sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10 OS=Oryza sativa subsp. japonica GN=CKX10 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZAY9|CKX5_ORYSJ Cytokinin dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CKX5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
223046127526 cytokinin oxidase/dehydrogenase [Gossypi 0.975 0.893 0.610 1e-167
379056394535 cytokinin dehydrogenase 3-like [Glycine 0.985 0.887 0.592 1e-166
356547877535 PREDICTED: cytokinin dehydrogenase 3-lik 0.987 0.889 0.595 1e-165
224088035529 cytokinin oxidase [Populus trichocarpa] 0.981 0.894 0.590 1e-164
356558359543 PREDICTED: cytokinin dehydrogenase 3-lik 0.981 0.871 0.593 1e-163
356564788560 PREDICTED: cytokinin dehydrogenase 3-lik 0.993 0.855 0.590 1e-163
356532728546 PREDICTED: cytokinin dehydrogenase 3-lik 0.979 0.864 0.586 1e-163
356545727508 PREDICTED: cytokinin dehydrogenase 3-lik 0.993 0.942 0.586 1e-162
255546119529 gulonolactone oxidase, putative [Ricinus 0.987 0.899 0.579 1e-161
225465421522 PREDICTED: cytokinin dehydrogenase 3 [Vi 0.968 0.894 0.587 1e-159
>gi|223046127|gb|ACM79256.1| cytokinin oxidase/dehydrogenase [Gossypium hirsutum] gi|251826367|gb|ACT21088.1| cytokinin oxidase/dehydrogenase [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/483 (61%), Positives = 368/483 (76%), Gaps = 13/483 (2%)

Query: 8   LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHST 67
           L  DP AI+ AS D+G I+K +P AVL+P++  DI  LI  SY+S   + IAAKG  HS 
Sbjct: 46  LSVDPSAIESASRDFGGIVKAEPEAVLHPSAPQDIAALIKFSYSSSVPFGIAAKGHGHSA 105

Query: 68  WGQAQANDGVVVQMNSL-NRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
            GQA A +GVVV M S+ N  RNGTGI +S DR    YADVGGEQLWIDVLNATL  GL+
Sbjct: 106 RGQAMAENGVVVDMRSMANNRRNGTGIRVSIDR---LYADVGGEQLWIDVLNATLEYGLA 162

Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
           PVSWTDYLY TVGGTLSNAGISG T++ GPQI+NVLE+DV+TGK +F+TCSP+ +SELFY
Sbjct: 163 PVSWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVLEMDVITGKADFLTCSPRMNSELFY 222

Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDF 246
           AVLGGLGQFGIITRARI L PA K VKW+R+LY DFSSF+ DQE LIS  G  DK   D+
Sbjct: 223 AVLGGLGQFGIITRARIPLQPAPKGVKWVRLLYDDFSSFTKDQELLISKNGRKDKSALDY 282

Query: 247 LEGHLLMNQSPLD-----FYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQML 301
           LEG LLM+Q   D     F+P     KI  L+ ++GI+Y +E+V +YD++ +    K+M 
Sbjct: 283 LEGSLLMDQGSPDNWRSSFFPHKDHPKIISLITKHGIIYCLEIVKHYDDRTKHTVDKEMK 342

Query: 302 KSLKG--FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFD 359
           + L+G  ++PGF+F KDV Y +FLNRV   E++L+ +GLWD+PHPWLN+FIPKS+I+DF+
Sbjct: 343 QVLQGLNYMPGFMFGKDVGYEEFLNRVRSGELKLKSQGLWDVPHPWLNLFIPKSQISDFN 402

Query: 360 NGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASA-DNWEAF 418
           NGVFR+I+L+RN T+  VLVYP+ R K D+RMSAVI  +EE+FY VGFL +S  D WEAF
Sbjct: 403 NGVFRDIVLERNITTGPVLVYPMNRQKRDDRMSAVI-PDEEIFYTVGFLHSSGFDTWEAF 461

Query: 419 DNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQR 478
           +++NKDI++FC   GI  KQYL H++TKEEW+ HFGSKW  FQ RK +FDPRM+LSPGQR
Sbjct: 462 EDQNKDIMRFCNKTGILVKQYLPHYSTKEEWVHHFGSKWKVFQHRKYQFDPRMLLSPGQR 521

Query: 479 IFN 481
           IFN
Sbjct: 522 IFN 524

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|379056394|ref|NP_001243813.1| cytokinin dehydrogenase 3-like [Glycine max] gi|376315492|gb|AFB18642.1| cytokinin dehydrogenase 3 [Glycine max] Back     alignment and taxonomy information
>gi|356547877|ref|XP_003542331.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224088035|ref|XP_002308300.1| cytokinin oxidase [Populus trichocarpa] gi|222854276|gb|EEE91823.1| cytokinin oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558359|ref|XP_003547474.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356564788|ref|XP_003550630.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356532728|ref|XP_003534923.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356545727|ref|XP_003541287.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|255546119|ref|XP_002514119.1| gulonolactone oxidase, putative [Ricinus communis] gi|223546575|gb|EEF48073.1| gulonolactone oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225465421|ref|XP_002264445.1| PREDICTED: cytokinin dehydrogenase 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
TAIR|locus:2164615523 CKX3 "cytokinin oxidase 3" [Ar 0.956 0.881 0.541 6.2e-133
TAIR|locus:2134423524 CKX4 "cytokinin oxidase 4" [Ar 0.962 0.885 0.507 1.3e-125
TAIR|locus:2050349501 CKX2 "cytokinin oxidase 2" [Ar 0.954 0.918 0.5 6.3e-124
TAIR|locus:2018437540 CKX5 "cytokinin oxidase 5" [Ar 0.948 0.846 0.480 9.4e-114
UNIPROTKB|Q5ZAY9534 CKX5 "Cytokinin dehydrogenase 0.973 0.878 0.464 2e-111
TAIR|locus:2062714575 CKX1 "cytokinin oxidase/dehydr 0.921 0.772 0.461 2e-104
UNIPROTKB|Q4ADV8565 CKX2 "Cytokinin dehydrogenase 0.512 0.437 0.492 5.8e-103
TAIR|locus:2087423533 CKX6 "cytokinin oxidase/dehydr 0.935 0.846 0.457 5.4e-102
UNIPROTKB|Q5JLP4529 CKX4 "Cytokinin dehydrogenase 0.929 0.846 0.444 3.8e-101
UNIPROTKB|Q8LNV6527 CKX3 "Cytokinin dehydrogenase 0.929 0.850 0.450 4.5e-98
TAIR|locus:2164615 CKX3 "cytokinin oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1303 (463.7 bits), Expect = 6.2e-133, P = 6.2e-133
 Identities = 261/482 (54%), Positives = 341/482 (70%)

Query:     8 LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHST 67
             L +   +++ A+ D+GH+ K  P AVL P+SV+DI  LI LS++S  S+ +AA+G  HS 
Sbjct:    48 LTSSSSSVESAATDFGHVTKIFPSAVLIPSSVEDITDLIKLSFDSQLSFPLAARGHGHSH 107

Query:    68 WGQAQANDGVVVQMNSL-NRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
              GQA A DGVVV M S+ NR R   GI +S  R+   Y DV    LWI+VLN TL  GL+
Sbjct:   108 RGQASAKDGVVVNMRSMVNRDR---GIKVS--RTC-LYVDVDAAWLWIEVLNKTLELGLT 161

Query:   127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
             PVSWTDYLY TVGGTLSN GISG T++ GPQITNVLE+DV+TGKGE  TCS   +S+LF+
Sbjct:   162 PVSWTDYLYLTVGGTLSNGGISGQTFRYGPQITNVLEMDVITGKGEIATCSKDMNSDLFF 221

Query:   187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDF 246
             AVLGGLGQFGIITRARI L  A KR KWLR LY DFS F+ DQE +IS T   D V  DF
Sbjct:   222 AVLGGLGQFGIITRARIKLEVAPKRAKWLRFLYIDFSEFTRDQERVISKT---DGV--DF 276

Query:   247 LEGHLLMNQSPLD-----FYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQM- 300
             LEG ++++  P D     +YP S   +I  +V ++ ++Y +EVV YYD  ++    ++M 
Sbjct:   277 LEGSIMVDHGPPDNWRSTYYPPSDHLRIASMVKRHRVIYCLEVVKYYDETSQYTVNEEME 336

Query:   301 -LKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFD 359
              L      + GF++EKDVTY+ FLNRV   E+ L+ KG WD+PHPWLN+F+PK++I+ FD
Sbjct:   337 ELSDSLNHVRGFMYEKDVTYMDFLNRVRTGELNLKSKGQWDVPHPWLNLFVPKTQISKFD 396

Query:   360 NGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFL-DASADNWEAF 418
             +GVF+ I+L+ N TS  VLVYP+ R+KW++RMSA I  EE+VFY VGFL  A  DNWEAF
Sbjct:   397 DGVFKGIILRNNITSGPVLVYPMNRNKWNDRMSAAIP-EEDVFYAVGFLRSAGFDNWEAF 455

Query:   419 DNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILSPGQR 478
             D +N +IL+FC +A +   QYL +H+++E W+ HFG +WN F +RK ++DP+MILSPGQ 
Sbjct:   456 DQENMEILKFCEDANMGVIQYLPYHSSQEGWVRHFGPRWNIFVERKYKYDPKMILSPGQN 515

Query:   479 IF 480
             IF
Sbjct:   516 IF 517
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009690 "cytokinin metabolic process" evidence=IEA
GO:0009823 "cytokinin catabolic process" evidence=ISS;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0019139 "cytokinin dehydrogenase activity" evidence=IEA;ISS;TAS
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008131 "primary amine oxidase activity" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2134423 CKX4 "cytokinin oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050349 CKX2 "cytokinin oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018437 CKX5 "cytokinin oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZAY9 CKX5 "Cytokinin dehydrogenase 5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2062714 CKX1 "cytokinin oxidase/dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4ADV8 CKX2 "Cytokinin dehydrogenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2087423 CKX6 "cytokinin oxidase/dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JLP4 CKX4 "Cytokinin dehydrogenase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LNV6 CKX3 "Cytokinin dehydrogenase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0JQ12CKX1_ORYSJ1, ., 5, ., 9, 9, ., 1, 20.46150.97920.8872yesno
Q5ZAY9CKX5_ORYSJ1, ., 5, ., 9, 9, ., 1, 20.46430.97300.8782yesno
Q5Z620CKX10_ORYSJ1, ., 5, ., 9, 9, ., 1, 20.46760.96680.8472yesno
Q6YW50CKX7_ORYSJ1, ., 5, ., 9, 9, ., 1, 20.45710.97090.8931yesno
Q6YW51CKX6_ORYSJ1, ., 5, ., 9, 9, ., 1, 20.45510.97710.8937yesno
Q9LTS3CKX3_ARATH1, ., 5, ., 9, 9, ., 1, 20.54520.94190.8680yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.5.99.120.914
3rd Layer1.5.990.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
PLN02441525 PLN02441, PLN02441, cytokinin dehydrogenase 0.0
pfam09265280 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1 1e-116
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 2e-22
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-19
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 2e-04
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase Back     alignment and domain information 
 Score =  727 bits (1878), Expect = 0.0
 Identities = 266/487 (54%), Positives = 340/487 (69%), Gaps = 23/487 (4%)

Query: 8   LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHST 67
           L  DP +   AS D+G+++   P AVLYP+SV+DI +L+  +Y S    T+AA+G  HS 
Sbjct: 43  LSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSL 102

Query: 68  WGQAQANDGVVVQMNSLNRFRNGT-GILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
            GQAQA  GVVV M SL     G   I++SGD   G Y DV G +LWIDVL ATL  GL+
Sbjct: 103 NGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGD---GPYVDVSGGELWIDVLKATLKHGLA 159

Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
           P SWTDYLY TVGGTLSNAGISG  ++ GPQI+NVLELDV+TGKGE VTCSP ++S+LF+
Sbjct: 160 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFF 219

Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDF 246
           AVLGGLGQFGIITRARI L PA KRV+W+R+LYSDFS+F+ DQE LIS   P +    D+
Sbjct: 220 AVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS--RPPENSF-DY 276

Query: 247 LEGHLLMN-QSPLD-----FYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEA---KKV 297
           +EG +++N    ++     F+  S   + + L +  G+LY +EV  YYD        ++V
Sbjct: 277 VEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEV 336

Query: 298 KQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITD 357
           + +LK L  F+PG +F  DV+Y+ FL+RVH +E++LR KGLW++PHPWLN+F+PKSRI D
Sbjct: 337 ESLLKRL-SFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIAD 395

Query: 358 FDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFL---DASADN 414
           FD+GVF+ ILL    T+  +LVYPL RSKWD R SAVI  +E++FY V  L     S D+
Sbjct: 396 FDDGVFKGILLDG--TNGPILVYPLNRSKWDNRTSAVI-PDEDIFYLVALLRSALPSGDD 452

Query: 415 WEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRMILS 474
            E    +NK+IL+FC  AGI  KQYL H+ T+EEW  HFG KW TF +RK +FDP  ILS
Sbjct: 453 LEHLLAQNKEILRFCEKAGIGVKQYLPHYTTQEEWKRHFGPKWETFVRRKAKFDPLAILS 512

Query: 475 PGQRIFN 481
           PGQRIFN
Sbjct: 513 PGQRIFN 519

Length = 525
>gnl|CDD|204184 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1, FAD and cytokinin binding Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
PLN02441525 cytokinin dehydrogenase 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
KOG1232511 consensus Proteins containing the FAD binding doma 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 100.0
PRK11183564 D-lactate dehydrogenase; Provisional 100.0
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 99.98
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.93
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.84
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.73
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.72
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.5
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 99.36
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.27
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.07
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 96.9
PRK09799258 putative oxidoreductase; Provisional 96.8
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.65
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 96.53
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.51
PLN00107257 FAD-dependent oxidoreductase; Provisional 95.81
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.65
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 95.01
PLN02906 1319 xanthine dehydrogenase 94.18
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 94.07
PLN00192 1344 aldehyde oxidase 91.97
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 91.15
COG1319284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 90.97
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 89.77
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-71  Score=566.58  Aligned_cols=469  Identities=57%  Similarity=0.997  Sum_probs=421.1

Q ss_pred             CCCCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccCCCeEEEEcCCCCCCCCccCCCcEEEEcCC
Q 044784            4 PTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHSTWGQAQANDGVVVQMNS   83 (482)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~~~~~~~~g~g~~~~~~~~~~~~vvidl~~   83 (482)
                      +.+.+.+|+..+..+.+||+..+...|.+|++|+|++||+++|++|+++++++++++||+|||+.|++.+.+|++|||++
T Consensus        39 ~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~  118 (525)
T PLN02441         39 LDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRS  118 (525)
T ss_pred             cCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCCeEEEECCC
Confidence            37889999999999999999988999999999999999999999993226699999999999999988877899999999


Q ss_pred             CcCc-CCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccccEE
Q 044784           84 LNRF-RNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVL  162 (482)
Q Consensus        84 ~~~~-~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~  162 (482)
                      ||++ ..+.++++|.+   ..+|+|+||++|.++.+++.++|+.|++++++..+||||+++++|+|+.+.+||..+|+|+
T Consensus       119 Ln~i~~~~~ii~vd~~---~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl  195 (525)
T PLN02441        119 LRGGVRGPPVIVVSGD---GPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL  195 (525)
T ss_pred             CCCcCccCceEEEcCC---CCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence            9930 00004788887   5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhcCCCCCCC
Q 044784          163 ELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKV  242 (482)
Q Consensus       163 ~~~vv~~~G~~~~~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  242 (482)
                      +++||+++|++++|++++|+||||+++||+|+|||||++|+|++|.|+.+.+..+.|.+++++.++++.++..  ..+. 
T Consensus       196 ~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~--~~~~-  272 (525)
T PLN02441        196 ELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISR--PPEN-  272 (525)
T ss_pred             EEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhc--CCCC-
Confidence            9999999999999999999999999999999999999999999999998889999999999999999998872  2222 


Q ss_pred             CCCcccceEeec-CCCC-----CcCCcccchhhhccccccceEEEEEEEEEeCCCcc---hHHHHHHHhccccCCCCccc
Q 044784          243 MPDFLEGHLLMN-QSPL-----DFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNE---AKKVKQMLKSLKGFLPGFVF  313 (482)
Q Consensus       243 ~~e~l~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~  313 (482)
                      ..|++++..+.. ...+     ..|+..+..+++.+...++++|++++..+|++...   .++.+++++.|+ +.++..+
T Consensus       273 ~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~-~~~~~~~  351 (525)
T PLN02441        273 SFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLS-FIPGLLF  351 (525)
T ss_pred             CcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcC-CCCCCce
Confidence            479999988865 2111     15677777788888888899999999999987652   368889999998 8898889


Q ss_pred             cccchHHHHhhhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceEEEEEccCCCCCcCcce
Q 044784          314 EKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSA  393 (482)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~g~~~~~~~~~  393 (482)
                      .++++|.+|+++++..+..++..++|+.+++|+++++|.+.+.+|.+.+++.+..  ....+.+++||+...||+..++.
T Consensus       352 ~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~--~~~~G~~liyP~~~~~~~~~~s~  429 (525)
T PLN02441        352 TTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILL--DGTNGPILVYPLNRSKWDNRTSA  429 (525)
T ss_pred             ecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhccc--ccCCCeEEEEecccccCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999985  33558999999999999998988


Q ss_pred             eeccCCceEEEEEeeCCC---cchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhHHHhhccchhHHHHhhhcCCCC
Q 044784          394 VIAAEEEVFYFVGFLDAS---ADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPR  470 (482)
Q Consensus       394 ~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~~~~yG~~~~~L~~iK~~~DP~  470 (482)
                      +.| ++..+|.+.+.+.+   .+.++.+.+.++++++.|+..|++.+.|+++|.+.++|+.+||+.|+++.+.|++|||+
T Consensus       430 ~~P-~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~~~~~~~W~~HfG~~w~~f~~~K~~yDP~  508 (525)
T PLN02441        430 VIP-DEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLPHYTTQEEWKRHFGPKWETFVRRKAKFDPL  508 (525)
T ss_pred             ccC-CCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCCCCCCHHHHHHHhcchHHHHHHHHhhCCch
Confidence            999 99999999998865   35788889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCCC
Q 044784          471 MILSPGQRIFNY  482 (482)
Q Consensus       471 nifnpgk~i~~~  482 (482)
                      +||.|||.|+++
T Consensus       509 ~iL~pgq~if~~  520 (525)
T PLN02441        509 AILSPGQRIFNR  520 (525)
T ss_pred             hhcCCCCccCCC
Confidence            999999999864

>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
3s1e_A516 Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-121
2qkn_A516 Crystal Structure Of Maize Cytokinin OxidaseDEHYDRO 1e-121
1w1o_A534 Native Cytokinin Dehydrogenase Length = 534 1e-121
3s1d_A516 Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-121
3s1f_A516 Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-121
2qpm_A516 Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-121
2exr_A524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 1e-101
4aut_A468 Crystal Structure Of The Tuberculosis Drug Target D 7e-08
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-07
4g3t_A403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 5e-07
4fdn_A481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 5e-05
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure 
Iteration: 1

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/493 (47%), Positives = 314/493 (63%), Gaps = 24/493 (4%)
Query: 8   LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL-FSYTIAAKGQAHS 66
           LRTD  A   AS D+G+I    P AVLYP+S  D+  L+  + ++  + YTIA +G+ HS
Sbjct: 29  LRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHS 88
Query: 67  TWGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLS 126
             GQA A  GVVV M SL        I +S D   G Y D GGEQ+WIDVL A+L RG++
Sbjct: 89  LMGQAFAPGGVVVNMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVA 145
Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
           P SWTDYLY TVGGTLSNAGISG  ++ GPQI+NVLE+DV+TG GE VTCS Q +++LF 
Sbjct: 146 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFD 205
Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTT--GPSDKVMP 244
           AVLGGLGQFG+ITRARI + PA  R +W+R++Y+DF++FS DQE L +    G      P
Sbjct: 206 AVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGGGASFGP 265
Query: 245 -DFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQYG--ILYIIEVVTYYDN-KNEA 294
             ++EG + +NQS         F+  +   +I  L  +     +Y IE    YDN    A
Sbjct: 266 MSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 325
Query: 295 KKVKQMLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIP 351
             V Q L S+ G   ++ GF F++DV Y  FL+RVH +E+ L K GLW +PHPWLN+F+P
Sbjct: 326 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVP 385
Query: 352 KSRITDFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDAS 411
           +SRI DFD GVF+ IL   +     ++VYPL +S WD+ MSA   + E+VFY V  L +S
Sbjct: 386 RSRIADFDRGVFKGILQGTDIVGQ-LIVYPLNKSMWDDGMSAATPS-EDVFYAVSLLFSS 443
Query: 412 A--DNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFD 468
              ++      +N+ IL+FC  AGI++K YL  H  + +W+ HFG +KWN F + K ++D
Sbjct: 444 VAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYD 503
Query: 469 PRMILSPGQRIFN 481
           P+ +LSPGQ IFN
Sbjct: 504 PKRLLSPGQDIFN 516
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu Length = 516 Back     alignment and structure
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase Length = 534 Back     alignment and structure
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine Length = 516 Back     alignment and structure
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Benzylurea Inhibitor Cpbu Length = 516 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-150
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-145
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-27
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-22
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 7e-20
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 2e-15
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 3e-15
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 3e-14
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 4e-13
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 5e-12
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 8e-12
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-10
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-10
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 8e-10
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 7e-05
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 4e-04
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
 Score =  438 bits (1128), Expect = e-150
 Identities = 201/490 (41%), Positives = 289/490 (58%), Gaps = 24/490 (4%)

Query: 8   LRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLFSYTIAAKGQAHST 67
           +     A  +A  D+G +   KP AV+ P   +DI   +  +  S    T+AA+G  HS 
Sbjct: 40  ILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRS-DKLTVAARGNGHSI 98

Query: 68  WGQAQANDGVVVQMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTR-GLS 126
            GQA A  G+VV M++        G L SG  ++  + DV G  LW DVL   ++  GL+
Sbjct: 99  NGQAMAEGGLVVDMSTTAENHFEVGYL-SGGDATA-FVDVSGGALWEDVLKRCVSEYGLA 156

Query: 127 PVSWTDYLYPTVGGTLSNAGISGHTYQKGPQITNVLELDVLTGKGEFVTCSPQKDSELFY 186
           P SWTDYL  TVGGTLSNAG+SG  ++ GPQ +NV ELDV+TG G+ VTCS  ++SELF+
Sbjct: 157 PRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFF 216

Query: 187 AVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLISTTGPSDKVMPDF 246
           +VLGGLGQFGIITRAR++L PA   V+W+R++Y++F  F+ D E L+S    S     D+
Sbjct: 217 SVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNESS---FDY 273

Query: 247 LEGHLLMNQSPL-------DFYPQSQRRKITFLVNQYGILYIIEVVTYYDNKNEAKKVKQ 299
           +EG + +N +           +P  +        +   +LY +E+  +Y + +    + +
Sbjct: 274 VEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDK 333

Query: 300 MLKSLKG---FLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRIT 356
            ++ L G   F  G  FE D+ Y+ FL RV   E   ++ G W+ PHPWLN+F+ K  I 
Sbjct: 334 RVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIG 393

Query: 357 DFDNGVFRNILLKRNFTSSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFL-----DAS 411
           DF+  VF+ ++  +N  +  +LVYPLLRS+WD+R S VI  E E+FY V  L      A 
Sbjct: 394 DFNRTVFKELV--KNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAK 451

Query: 412 ADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGSKWNTFQQRKTRFDPRM 471
             + E    +N++I+ +CV  GI +K YL H+ ++EEWI HFG++W+ F  RK  FDP  
Sbjct: 452 VSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMA 511

Query: 472 ILSPGQRIFN 481
           ILSPGQ+IFN
Sbjct: 512 ILSPGQKIFN 521
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 100.0
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 100.0
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.93
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.86
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.85
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.59
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.85
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.82
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.44
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 97.2
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 96.79
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 93.6
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 90.71
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
Probab=100.00  E-value=5.2e-59  Score=487.81  Aligned_cols=463  Identities=49%  Similarity=0.891  Sum_probs=361.7

Q ss_pred             CCCCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhcc--C-CCeEEEEcCCCCCCCCccCCCcEEEE
Q 044784            4 PTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSL--F-SYTIAAKGQAHSTWGQAQANDGVVVQ   80 (482)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~--~-~~~~~~~g~g~~~~~~~~~~~~vvid   80 (482)
                      +.++|++|+..+..+..+|+..+...|.+|++|+|++||+++|++|  ++  + ++|++++|||||+.|.+.+.+|++||
T Consensus        43 ~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a--~~~~~~~~~v~~~G~G~~~~g~~~~~~gvvi~  120 (534)
T 1w1o_A           43 LDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAA--NSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN  120 (534)
T ss_dssp             TTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHH--HHCTTCCCCEEEESSCCCSSSTTCCTTSEEEE
T ss_pred             CCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHH--HhcCCCCceEEEECCCCCCCCCcCCCCeEEEE
Confidence            4678999999999999999987888999999999999999999999  54  6 99999999999999888777899999


Q ss_pred             cCCCcCcCCCce-----EEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCC
Q 044784           81 MNSLNRFRNGTG-----ILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKG  155 (482)
Q Consensus        81 l~~~~~~~~~~~-----i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G  155 (482)
                      |++||+     +     +++|++   ..+++||||++|.+|.+++.++|+.++++++...+||||++++||.|+.+.+||
T Consensus       121 l~~m~~-----i~~~~~~~~d~~---~~~v~v~aGv~~~~l~~~~~~~Gl~~~~~~~~~~~tvGG~v~~~g~g~~~~~yG  192 (534)
T 1w1o_A          121 MASLGD-----AAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHG  192 (534)
T ss_dssp             GGGGGC-----SSSSCSEEECTT---SSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHC
T ss_pred             Cccccc-----cccCccEEEcCC---CCEEEECCCcCHHHHHHHHHHCCCcccCCCCCCCEEeceeccCCCccccccccc
Confidence            999994     6     899987   489999999999999999999999988888888899999999999999999999


Q ss_pred             CccccEEEEEEEecCCeEEEecCCCCchhHHhHhcCCCCcEEEEEEEEEEeecCCceEEEEEEeCChhhHHHHHHHHHhc
Q 044784          156 PQITNVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPAKKRVKWLRILYSDFSSFSTDQETLIST  235 (482)
Q Consensus       156 ~~~d~v~~~~vv~~~G~~~~~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (482)
                      .++|+|+++|||++||+++++++.+++||||+++||+|+|||||+++||++|.|+...++.+.|.+++++.+.+..+...
T Consensus       193 ~~~d~v~~~evV~~dG~v~~~~~~~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (534)
T 1w1o_A          193 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAP  272 (534)
T ss_dssp             CGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHHHHHHCB
T ss_pred             cHhhhEEEEEEEeCCccEEEECCCCChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999998778888999998888888777765


Q ss_pred             CCC-----CCCCCCCcccceEeecCC------CCCcCCcccchhhhccccc--cceEEEEEEEEEeCC-C---cc-hHHH
Q 044784          236 TGP-----SDKVMPDFLEGHLLMNQS------PLDFYPQSQRRKITFLVNQ--YGILYIIEVVTYYDN-K---NE-AKKV  297 (482)
Q Consensus       236 ~g~-----~~~~~~e~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~---~~-~~~~  297 (482)
                       +.     .+. .+|+++...+....      ....++......+..++..  +...+++++..+++. .   .+ .+.+
T Consensus       273 -~~~~~~~~~~-~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g~~~~~~~~~~~~  350 (534)
T 1w1o_A          273 -RPGGGGASFG-PMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQEL  350 (534)
T ss_dssp             -C------CBC-SCSEEEEEEEEGGGHHHHHHTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC-------CHHHHHH
T ss_pred             -cccccccccc-chhHhhhhhhcccccccccccccccCccccccccccccccccceEEEEEEEEecCCCccchhhhHHHH
Confidence             43     343 68999887663210      0001111000111122322  456677776655532 2   11 2456


Q ss_pred             HHHHhccccCCCCccccccchHHHHhhhhhHHHHHHHHccCCCCCccccccccccchhhhhhHHHHHHHhhccCCCCceE
Q 044784          298 KQMLKSLKGFLPGFVFEKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFTSSTV  377 (482)
Q Consensus       298 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~vp~~~~~~~~~~~~~~l~~~~~~~~~~i  377 (482)
                      +.+++.+... +...+....+|..+.+..............|..++++.++++|.+.++++++++.+.+.+. ......+
T Consensus       351 ~~~~~~l~~~-~~~~~~~~~~y~~~~~~~~~~~w~~r~~~~~~~~~~~~d~~vP~s~l~~~~~~~~~~l~~~-~~~~~~~  428 (534)
T 1w1o_A          351 ASVLGTLSYV-EGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQG-TDIVGPL  428 (534)
T ss_dssp             HHHHTTCCCC-TTCEEEEEEEHHHHHTHHHHHHHHHHHTTCSSSCCCCEEEEEEGGGHHHHHHHHTTTTTTT-SCCCSCE
T ss_pred             HHHHHhhccc-CCcceeccchHHHHhhhhhhhHHHHhhccccccCCccccEEecHHHHHhHHHHHHHHHhhc-cCCcccE
Confidence            6666666532 2233345677777655543322233456677776667799999999999998775545542 2222456


Q ss_pred             EEEEccCCCCCcCcceeeccCCceEEEEEeeCC--CcchHHHHHHhhHHHHHHHHHcCccceecCCCCCChhhHHHhhcc
Q 044784          378 LVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDA--SADNWEAFDNKNKDILQFCVNAGIKFKQYLGHHATKEEWIIHFGS  455 (482)
Q Consensus       378 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~l~~~~~~~G~~~~~y~~~~~~~~~~~~~yG~  455 (482)
                      .++++.|.+++..++.+.+ ++++||++.+...  .++.+++..+..+++.+.+.+.|.++..|++.++..++|+..||+
T Consensus       429 ~~~~~~gh~~~~~~s~v~~-dgn~h~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~yl~~~~~~~~w~~~~G~  507 (534)
T 1w1o_A          429 IVYPLNKSMWDDGMSAATP-SEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGA  507 (534)
T ss_dssp             EEEEEEGGGSCTTSSCCCC-SSSEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHTTCCCEESSCCCSSHHHHHHHHCH
T ss_pred             EEeecccccccccccccCC-CccEEEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhCCCcEEECCCCCChHHHHHHhCH
Confidence            7778776666667788888 9999999887654  234555556778888988888887789999888788999778997


Q ss_pred             -chhHHHHhhhcCCCCCCCCCCCcCCC
Q 044784          456 -KWNTFQQRKTRFDPRMILSPGQRIFN  481 (482)
Q Consensus       456 -~~~~L~~iK~~~DP~nifnpgk~i~~  481 (482)
                       +|++|++||++|||+|||||||.|++
T Consensus       508 ~~~~~l~~iK~~~DP~~ilnpgk~I~~  534 (534)
T 1w1o_A          508 AKWNRFVEMKNKYDPKRLLSPGQDIFN  534 (534)
T ss_dssp             HHHHHHHHHHHHHCTTCCBCGGGCSCC
T ss_pred             HHHHHHHHHHHhcCchhhcCCCCcCCC
Confidence             99999999999999999999997764
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 482
d1w1oa1289 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {M 1e-106
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-32
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-14
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 5e-08
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 8e-06
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 5e-05
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 289 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score =  316 bits (810), Expect = e-106
 Identities = 114/291 (39%), Positives = 171/291 (58%), Gaps = 22/291 (7%)

Query: 210 KRVKWLRILYSDFSSFSTDQETLIS---TTGPSDKVMPDFLEGHLLMNQSPLD------F 260
            R +W+R +Y+DF++FS DQE L +     G +      ++EG + +NQS         F
Sbjct: 2   ARARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGF 61

Query: 261 YPQSQRRKITFLVNQ--YGILYIIEVVTYYDNKNEA-----KKVKQMLKSLKGFLPGFVF 313
           +  +   +I  L  +     +Y IE    YDN   A     +++  +L +L  ++ GF F
Sbjct: 62  FTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTL-SYVEGFAF 120

Query: 314 EKDVTYLQFLNRVHDQEIELRKKGLWDIPHPWLNIFIPKSRITDFDNGVFRNILLKRNFT 373
           ++DV Y  FL+RVH +E+ L K GLW +PHPWLN+F+P+SRI DFD GVF+ I L+    
Sbjct: 121 QRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGI-LQGTDI 179

Query: 374 SSTVLVYPLLRSKWDERMSAVIAAEEEVFYFVGFLDASA--DNWEAFDNKNKDILQFCVN 431
              ++VYPL +S WD+ MSA     E+VFY V  L +S   ++      +N+ IL+FC  
Sbjct: 180 VGPLIVYPLNKSMWDDGMSAAT-PSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDL 238

Query: 432 AGIKFKQYLGHHATKEEWIIHFG-SKWNTFQQRKTRFDPRMILSPGQRIFN 481
           AGI++K YL  H  + +W+ HFG +KWN F + K ++DP+ +LSPGQ IFN
Sbjct: 239 AGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN 289
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.97
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.94
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.91
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.43
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 99.12
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 98.89
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.82
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 96.52
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 96.44
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 96.23
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 96.22
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.13
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=8.8e-43  Score=317.70  Aligned_cols=201  Identities=58%  Similarity=0.910  Sum_probs=187.1

Q ss_pred             CCCCCeecChhHHHHHhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHhccC---CCeEEEEcCCCCCCCCccCCCcEEE
Q 044784            3 EPTDNLRTDPGAIKLASIDYGHIIKEKPFAVLYPTSVDDIRTLIYLSYNSLF---SYTIAAKGQAHSTWGQAQANDGVVV   79 (482)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~p~~~~ev~~~v~~a~~~~~---~~~~~~~g~g~~~~~~~~~~~~vvi   79 (482)
                      .|+++|++|+..+..+.+||++.+...|.+|++|+|++||+++|++|  +++   ++|+++||+|||+.+.+...++++|
T Consensus         3 ~~~g~v~td~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a--~~~~~~~~~v~~rggGhs~~g~s~~~~~ivi   80 (206)
T d1w1oa2           3 ALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAA--NSTPGWPYTIAFRGRGHSLMGQAFAPGGVVV   80 (206)
T ss_dssp             TTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHH--HHCTTCCCCEEEESSCCCSSSTTCCTTSEEE
T ss_pred             cCCcEEEcCHHHhhhhEECcccCcccCCCEEEEcCCHHHHHHHHHHH--HhCCCCCeEEEEECCCCCcccCcccCCCEee
Confidence            47899999999999999999988899999999999999999999999  554   6999999999999988877789999


Q ss_pred             EcCCCcCcCCCceEEEcCCCCCccEEEEcccccHHHHHHHHHhCCCccccCCCCCCccccccccccccCCCCCcCCCccc
Q 044784           80 QMNSLNRFRNGTGILISGDRSSGFYADVGGEQLWIDVLNATLTRGLSPVSWTDYLYPTVGGTLSNAGISGHTYQKGPQIT  159 (482)
Q Consensus        80 dl~~~~~~~~~~~i~~~~~~~~~~~~~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d  159 (482)
                      ||++||++.-...+++|++   ..+++||||++|.+|.++|.++|+.++..++...+||||+++++|+|+.+.+||..+|
T Consensus        81 dl~~l~~i~~~~~~~id~~---~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d  157 (206)
T d1w1oa2          81 NMASLGDAAAPPRINVSAD---GRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQIS  157 (206)
T ss_dssp             EGGGGGCSSSSCSEEECTT---SSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGG
T ss_pred             eccccceeeeceeEEEecC---CCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccccccceee
Confidence            9999995322223899999   5999999999999999999999999888888899999999999999999999999999


Q ss_pred             cEEEEEEEecCCeEEEecCCCCchhHHhHhcCCCCcEEEEEEEEEEeec
Q 044784          160 NVLELDVLTGKGEFVTCSPQKDSELFYAVLGGLGQFGIITRARIVLGPA  208 (482)
Q Consensus       160 ~v~~~~vv~~~G~~~~~~~~~~~dl~~~~~g~~g~~Giit~~~~~~~~~  208 (482)
                      +|+++|+|++||+++++++++++||||+++|++|+|||||++|||++|+
T Consensus       158 ~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         158 NVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             eeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure