Citrus Sinensis ID: 044792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MEASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEGTNEDGILRNLDL
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccccHcHHHHcccc
Coil and Loop (DISEMBL)
MEASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMsphkraftfghpnpddvLDRFltgagaesslaattvEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKrgndrangvfwwdqysiddMERDELELYLKSLEKLKTSVKSKVDELAAASVASnnfvnqfnidnnipidfgsefddlccllegtnedgilrnldl
Flexible Loop (DISEMBL)
measkqknkglqkieikrverksarqvtfskrkkglfnkaSELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAEsslaattvedekleRLKQEYVELlnrlkeeekkrdeiakkrgndrangvfwwdqysiDDMERDELELYLKSLEKLKTSVKSKVDELAAASvasnnfvnqfNIDNNIPIDFGSEFDDLCCLLEgtnedgilrnldl
Low Complexity Region (SEG)
MEASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVellnrlkeeekkrdeIAKKRGNDRANGVFWWDQYSIDDMERDelelylksleklkTSVKSKVDELaaasvasnnfvnqfnidnniPIDFGSEFDDLCCLLEGTNEDGILRNLDL
Disordered region (IsUnstruct)
*********************************KGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGA***********************V************************ANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEGTNEDGI******
Disordered Region (DISOPRED)
****************KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFL*********************LK*EY***************************GVFWWDQYSIDDMERDELELYLKSLEKLKTSVKS*******************************************NEDG**RNL**
Disordered Region (DISEMBL)
***********QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEGTNEDGILRNLDL
Disordered Region (DISPRO)
*************IEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEGTNEDGILRNLDL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSLAATTVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRGNDRANGVFWWDQYSIDDMERDELELYxxxxxxxxxxxxxxxxxxxxxSVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEGTNEDGILRNLDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	yes	no	0.776	0.568	0.395	2e-28
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.671	0.556	0.370	1e-23
O64645	214	MADS-box protein SOC1 OS=	no	no	0.662	0.677	0.320	7e-15
O82794	220	MADS-box protein AGL24 OS	no	no	0.662	0.659	0.348	5e-14
Q01540	252	Floral homeotic protein A	N/A	no	0.488	0.424	0.350	8e-13
Q5K4R0	246	MADS-box transcription fa	no	no	0.716	0.638	0.325	9e-13
Q38847	268	Agamous-like MADS-box pro	no	no	0.447	0.365	0.378	1e-12
Q8RU31	265	MADS-box transcription fa	no	no	0.657	0.543	0.319	1e-12
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.465	0.384	0.401	2e-12
Q6VAM4	159	MADS-box transcription fa	no	no	0.310	0.427	0.455	2e-12

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 7/177 (3%)

Query: 6   QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
           +K+KG QKIE+ +++ +S  QVTFSKR+ GLF KASELC LCGAEVAIV+ SP ++ F+F
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 66  GHPNPDDVLDRFLTGAGAESSLAAT-----TVEDEKLERLKQEYVELLNRLKEEEKKRDE 120
           GHPN D V+DRF+                 T  +  ++ L     ++L++L+ E+KK DE
Sbjct: 63  GHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDE 122

Query: 121 IAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVAS 177
           + K R   +A G +W D   ++++   +LE +  +LE LK  V  +      A+V +
Sbjct: 123 LKKIREKTKALGNWWED--PVEELALSQLEGFKGNLENLKKVVTVEASRFFQANVPN 177

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 102/162 (62%), Gaps = 15/162 (9%)

Query: 10  GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
           G QKI + +++++S RQVTFSKR+ GLF KASELC LCGAE+ I++ SP K+ F+FGHP+
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122

Query: 70  PDDVLDRFLTGAGAESSLAATTVEDEKLE-------RLKQEYVELLNRLKEEEKKRDEIA 122
            + VLDR+++      SLA    + ++L+        L  +   +L+ ++EE+KK   + 
Sbjct: 123 VESVLDRYVSRNNM--SLA----QSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAME 176

Query: 123 KKRGND-RANGVFWWDQYSIDDMERDELELYLKSLEKLKTSV 163
           + R    R + + WW++  +++M   +L+    +LE+L+ +V
Sbjct: 177 EMRKESVRRSMINWWEK-PVEEMNMVQLQEMKYALEELRKTV 217

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 17/162 (10%)

Query: 13  KIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDD 72
           K ++KR+E  ++RQVTFSKR+ GL  KA EL VLC AEV+++I SP  + + F   N  D
Sbjct: 5   KTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQD 64

Query: 73  VLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKE-EEKKRDEIAKKRGNDRAN 131
            +DR+L     +  ++   V +E ++ LK E   ++ ++++ E  KR  + +  G     
Sbjct: 65  TIDRYLR--HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGT---- 118

Query: 132 GVFWWDQYSIDDMER--DELELYLKSLEKLKTSV-KSKVDEL 170
                   SI+++++   +LE  +K +   KT V K ++++L
Sbjct: 119 -------CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQL 153

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 27/172 (15%)

Query: 12  QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPD 71
           +KI IK+++  +ARQVTFSKR++G+F KA EL VLC A+VA++I S   + F F      
Sbjct: 4   EKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSSRMR 63

Query: 72  DVLDRFLTGAGAESSLAATTVE---DEKLERLKQEYVELLNRLKEEEKKRDEIAKKRGND 128
           D+L R+        SL A+ +    D     L+ E   L    KE E K  ++ K RG D
Sbjct: 64  DILGRY--------SLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGED 115

Query: 129 RANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNF 180
                   D  ++++++R         LEKL  S  S+V E     V S  F
Sbjct: 116 -------LDGLNLEELQR---------LEKLLESGLSRVSEKKGECVMSQIF 151

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 7/114 (6%)

Query: 2   EASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKR 61
           E+S Q+  G  KIEIKR+E  + RQVTF KR+ GL  KA EL VLC AEVA+++ S   R
Sbjct: 10  ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 69

Query: 62  AFTFGHPNPDDVLDRFL------TGAGAESSLAATTVEDEKLERLKQEYVELLN 109
            + + + +    ++R+       +  G+ + + A   + E   +L+Q+ + + N
Sbjct: 70  LYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQES-AKLRQQIISIQN 122

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 24/181 (13%)

Query: 12  QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPD 71
           ++I I+R++  +ARQVTFSKR++GLF KA EL +LC AEV +V+ S   + F F   + +
Sbjct: 23  ERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSME 82

Query: 72  DVLDRF--------------LTGAGAESSLAATTVED--EKLERLKQEYVELLNRLKEEE 115
            ++DR+              L   G +SS  A   E+  E   RL+Q   E L+RL  E+
Sbjct: 83  QIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQ 142

Query: 116 KKRDEIAKKRGND---RANGVFWWDQYSIDDMERDELELYLKSL---EKLKTSVKSKVDE 169
            +  E + + G     +       D+  ID +ER  ++L  ++L   E+L+ S  S+++E
Sbjct: 143 LQELEKSLESGLGSVLKTKSKKILDE--IDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200

Query: 170 L 170
           +
Sbjct: 201 M 201

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 10  GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
           G  KIEIKR+E  ++RQVTFSKR+ GL  KA EL VLC AEVA+++ S   + F +    
Sbjct: 2   GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG 61

Query: 70  PDDVLDRF-----LTGAGAESSLAATTVEDEKLERLKQEYVEL 107
               L R+      + + AE   A   +  ++L +L++++++L
Sbjct: 62  MKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQL 104

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 19/163 (11%)

Query: 10  GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
           G  KIEIKR+E K++RQVTF KR+ GL  KA EL +LC AE+A+++ S   R + F + N
Sbjct: 2   GRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVN 61

Query: 70  PD-DVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKE-EEKKRDEIAKKRGN 127
                ++R+   A A +S +A  ++    +  +QE  ++ ++++  +   R  I +    
Sbjct: 62  STRSTIERY-KKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGE---- 116

Query: 128 DRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDEL 170
                       SI +M   EL+     LEK  + ++SK  EL
Sbjct: 117 ------------SIGNMTAKELKSLENRLEKGISRIRSKKHEL 147

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 12  QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPD 71
           +KI+IK+++  +ARQVTFSKR++GLF KA EL VLC A+VA++I S   + F +   +  
Sbjct: 4   EKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMK 63

Query: 72  DVLDRF-LTGAGAE----SSLAATTVEDEKLERLKQEYVELLNRLKE 113
            +L+R  L     E     SL    VE+    RL +E  E  +RL++
Sbjct: 64  QILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQ 110

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G  KIEIKR++  ++RQVTFSKR+ GLF KA EL +LC AEV +++ S   R + F   +
Sbjct: 2  GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61

Query: 70 PDDVLDRF 77
             +++R+
Sbjct: 62 MKSIIERY 69

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255583383	217	mads box protein, putative [Ricinus comm	0.881	0.889	0.414	5e-31
224140447	162	predicted protein [Populus trichocarpa]	0.721	0.975	0.461	1e-29
359483542	223	PREDICTED: agamous-like MADS-box protein	0.707	0.695	0.429	2e-29
357436991	237	MADS-box transcription factor [Medicago	0.849	0.784	0.378	7e-29
225463450	222	PREDICTED: agamous-like MADS-box protein	0.680	0.671	0.424	9e-29
225429169	212	PREDICTED: agamous-like MADS-box protein	0.894	0.924	0.359	1e-28
297736394	224	unnamed protein product [Vitis vinifera]	0.894	0.875	0.359	1e-28
357444561	228	MADS-box transcription factor [Medicago	0.707	0.679	0.422	4e-28
449465111	228	PREDICTED: agamous-like MADS-box protein	0.835	0.802	0.370	7e-28
357448597	237	Agamous-like MADS-box protein AGL11 [Med	0.757	0.700	0.411	9e-28

>gi|255583383|ref|XP_002532452.1| mads box protein, putative [Ricinus communis] gi|223527842|gb|EEF29938.1| mads box protein, putative [Ricinus communis]

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 123/205 (60%), Gaps = 12/205 (5%)

Query: 5   KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFT 64
           +++ KG QKIEIK +E KS  QVTFSKR+ GLF KASEL +LCGA+VA++  SP K+ F 
Sbjct: 8   QKRTKGRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFA 67

Query: 65  FGHPNPDDVLDRFLTGAGA---ESSLAATTVEDEKLERLKQEYVELLNRLKEEEK--KRD 119
           FGHPN + VLDR+L        E +    T +  ++++  +EY + +  L+EE+K     
Sbjct: 68  FGHPNVETVLDRYLNEGNPDAKEDTAQTVTSDSPRVQQWNKEYEDAMKELEEEKKCLAMV 127

Query: 120 EIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNN 179
           E  KK      NG FWWD+  +DDM  +ELE Y K+L++LK +V  + +EL    + +N+
Sbjct: 128 EEWKKVRESNVNGGFWWDE-PVDDMGVEELEEYAKALKELKRNVGIRANELMM--IGNNH 184

Query: 180 FV---NQFNIDNNIPI-DFGSEFDD 200
            +   NQ N+   +   D G  F D
Sbjct: 185 HIVNNNQNNLGYGVGTSDLGFGFGD 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140447|ref|XP_002323594.1| predicted protein [Populus trichocarpa] gi|222868224|gb|EEF05355.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 9/167 (5%)

Query: 5   KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFT 64
           ++ +KG QKIEIK+V+++S R VTFSKRK GLF KA+EL  LCGAE A+++ S H++ F+
Sbjct: 1   RRTSKGRQKIEIKKVQKESNRYVTFSKRKNGLFKKATELSTLCGAETAVIVFSEHRKLFS 60

Query: 65  FGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERL--KQEYVELLNRLKEEEKKRDEIA 122
            G P+ D VLDR+L       S       +    +L  KQEY   L RL+EE+     +A
Sbjct: 61  CGQPDVDKVLDRYLAETEKVPSNFPPVTNNNIESQLANKQEYARSLKRLEEEQT----VA 116

Query: 123 KKRG--NDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKV 167
           K  G  ND   G FWWD   ID+ME+DELE Y +S+E+LK +V +++
Sbjct: 117 KMIGNMNDMNEGGFWWD-LPIDNMEQDELEAYKESMEQLKKNVITRL 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483542|ref|XP_002264830.2| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 15/170 (8%)

Query: 6   QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
           +KN G QKIEI+++E+K++  VTFSKR+ GLF KA ELCVLCG E A+++ SP  RAF F
Sbjct: 9   RKNMGRQKIEIRKIEKKNSLLVTFSKRRTGLFKKAGELCVLCGVEAAVIVFSPAGRAFVF 68

Query: 66  GHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKR 125
           GHP  D V+DRFL       S A    E     +++++Y+E + R    E K++E     
Sbjct: 69  GHPTADAVIDRFLGRDTGTISRAVVPAEQVVHGQVQRQYLEPVGR---AEAKKEE----- 120

Query: 126 GNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASV 175
                 G FWWD   I++M  +ELE +  SLEKL+  V  +V+E+ +  V
Sbjct: 121 ------GGFWWDA-PIENMGLNELEQFKGSLEKLRKKVADRVEEMTSMMV 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436991|ref|XP_003588771.1| MADS-box transcription factor [Medicago truncatula] gi|355477819|gb|AES59022.1| MADS-box transcription factor [Medicago truncatula]

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 12/198 (6%)

Query: 3   ASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRA 62
           +S +K++G QKIE+K++  +S  QVTFSKR+ GLF KASELC LCGA+VA++I SP ++ 
Sbjct: 2   SSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIIFSPGEKV 61

Query: 63  FTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVEL--LNRLKEEEKKRD- 119
           F+FG PN D V+D +L+    +++     +E  +   +++  ++L  +N+L + EKKRD 
Sbjct: 62  FSFGQPNVDTVIDHYLSRVPLKNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRDE 121

Query: 120 EIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNN 179
           E++  R  +     FWW   S+D M R +LE++ K+LE++K  V    + L   +  +  
Sbjct: 122 ELSHLRKANETQ--FWWAG-SVDGMNRAQLEVFKKALEEIKKLVAHHANRLVIQAAPTQT 178

Query: 180 FVNQFNIDN----NIPID 193
           F   F + N    N+P+D
Sbjct: 179 F--PFFVGNGSSSNMPLD 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463450|ref|XP_002272654.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 16/165 (9%)

Query: 6   QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
           +KN G +KIEI+++E+KS+ +VTFSKR+ GLF KA ELCVLCGAE A+++ SP  RAF F
Sbjct: 9   RKNTGRKKIEIRKIEKKSSLEVTFSKRRAGLFKKAGELCVLCGAEAAVIVFSPGGRAFVF 68

Query: 66  GHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKR 125
           GHP  D V+D FL      SS      E     +++++Y+E + R + +E+         
Sbjct: 69  GHPTADAVIDHFLGRDTDTSSRGVVPAEQVVHGQVQRQYLEAVGRAEVKEE--------- 119

Query: 126 GNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDEL 170
                 G FWWD   I++M  +ELE +  SLEKL+  V  +V E+
Sbjct: 120 ------GGFWWDA-PIENMGLNELEQFKGSLEKLREKVADRVAEI 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429169|ref|XP_002271290.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 3   ASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRA 62
           A  +K+KG QK+E+ ++ ++S  QVTFSKR+ GLF KASELC LCGAE+AI++ SP K+ 
Sbjct: 2   APTRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKM 61

Query: 63  FTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEK---LERLKQEYVELLNRLKEEEKKRD 119
           ++FGHP  + ++DRFLTG     S A    E  +   +  L  +  ++LN+L+ E+K+ +
Sbjct: 62  YSFGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGE 121

Query: 120 EIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNN 179
            + + +   +A   +WW    I+++  ++LEL   SLE LK +V+   D+    +     
Sbjct: 122 ALTQMKKASQAQ--YWWAA-PIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLT 178

Query: 180 FVNQFNIDNNIPIDFG-SEFDDL 201
           F    ++   +P D   + FD L
Sbjct: 179 FFLSSSVGAGVPYDAHIAAFDPL 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736394|emb|CBI25117.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 3   ASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRA 62
           A  +K+KG QK+E+ ++ ++S  QVTFSKR+ GLF KASELC LCGAE+AI++ SP K+ 
Sbjct: 2   APTRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKM 61

Query: 63  FTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEK---LERLKQEYVELLNRLKEEEKKRD 119
           ++FGHP  + ++DRFLTG     S A    E  +   +  L  +  ++LN+L+ E+K+ +
Sbjct: 62  YSFGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGE 121

Query: 120 EIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNN 179
            + + +   +A   +WW    I+++  ++LEL   SLE LK +V+   D+    +     
Sbjct: 122 ALTQMKKASQAQ--YWWAA-PIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLT 178

Query: 180 FVNQFNIDNNIPIDFG-SEFDDL 201
           F    ++   +P D   + FD L
Sbjct: 179 FFLSSSVGAGVPYDAHIAAFDPL 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444561|ref|XP_003592558.1| MADS-box transcription factor [Medicago truncatula] gi|355481606|gb|AES62809.1| MADS-box transcription factor [Medicago truncatula]

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 102/161 (63%), Gaps = 6/161 (3%)

Query: 3   ASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRA 62
           +S +K +G QKIE+K++  +S  QVTFSKR+ GLF KASELC LCGA+ A+V+ SP  + 
Sbjct: 2   SSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKV 61

Query: 63  FTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEK---LERLKQEYVELLNRLKEEEKKRD 119
           F+FGHPN D V+DR+L+    +++     +E  +   +  L  +  ++ N L  E+K  D
Sbjct: 62  FSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNTLDAEKKIGD 121

Query: 120 EIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLK 160
           E++       AN  FWW    +D M +D+LEL+ K+LE+LK
Sbjct: 122 ELSHFLKETEAN--FWW-ACPVDGMNKDQLELFKKALEELK 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465111|ref|XP_004150272.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus] gi|449484412|ref|XP_004156875.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 6/189 (3%)

Query: 6   QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
           +K++G QK+E+ ++  +S  QVTFSKR+ GLF KASELC LCGAE+AI++ SP K+ F+F
Sbjct: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61

Query: 66  GHPNPDDVLDRFLTGAGAESSLAATTVEDEK---LERLKQEYVELLNRLKEEEKKRDEIA 122
           GHP  + +++RF+T     SS     +E  +   +  L  +  ++LN+L+ E K+ +E+ 
Sbjct: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121

Query: 123 KKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVN 182
           K R   +A    WW+   I++ME  +LE    SL++LK +V  + D +   + ++ N   
Sbjct: 122 KLRKASQAQC--WWE-LPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPT 178

Query: 183 QFNIDNNIP 191
           Q      IP
Sbjct: 179 QLIFPTQIP 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448597|ref|XP_003594574.1| Agamous-like MADS-box protein AGL11 [Medicago truncatula] gi|355483622|gb|AES64825.1| Agamous-like MADS-box protein AGL11 [Medicago truncatula]

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 108/170 (63%), Gaps = 4/170 (2%)

Query: 3   ASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRA 62
           +S +K++G QKIE+K++  +S  QVTFSKR+ GLF KASELC LCGA+VA+V+ SP ++ 
Sbjct: 2   SSGRKSQGRQKIEMKKITNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPREKV 61

Query: 63  FTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVEL--LNRLKEEEKKRDE 120
           F+FGHPN D V+DR+L+    +++     +E  +   + +  +++  +N+L + EKKR E
Sbjct: 62  FSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSASVCELNIQVTQINQLLDIEKKRAE 121

Query: 121 IAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDEL 170
                 +      FWW    +D M R +LEL+ K+L++LK  V   VD L
Sbjct: 122 ELSNL-HKATETQFWWAG-PVDGMNRAQLELFKKALDELKKLVAHHVDRL 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.333	0.244	0.630	1.9e-21
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.360	0.299	0.531	4.4e-20
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.333	0.295	0.534	3.2e-17
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.328	0.290	0.527	5.3e-17
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.328	0.318	0.527	6.7e-17
TAIR|locus:2825756	266	AGL97 "AGAMOUS-like 97" [Arabi	0.305	0.251	0.478	7.8e-17
TAIR|locus:2193922	224	AT1G72350 [Arabidopsis thalian	0.347	0.339	0.487	1.2e-16
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.643	0.774	0.342	1.8e-16
TAIR|locus:2206016	191	AGL55 "AGAMOUS-like 55" [Arabi	0.305	0.350	0.486	1.7e-15
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.621	0.657	0.340	2.6e-15

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 46/73 (63%), Positives = 60/73 (82%)

Query:     6 QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
             +K+KG QKIE+ +++ +S  QVTFSKR+ GLF KASELC LCGAEVAIV+ SP ++ F+F
Sbjct:     3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query:    66 GHPNPDDVLDRFL 78
             GHPN D V+DRF+
Sbjct:    63 GHPNVDSVIDRFI 75

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 42/79 (53%), Positives = 63/79 (79%)

Query:     1 MEASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHK 60
             M + K+++ G QKI + +++++S RQVTFSKR+ GLF KASELC LCGAE+ I++ SP K
Sbjct:    54 MMSKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAK 113

Query:    61 RAFTFGHPNPDDVLDRFLT 79
             + F+FGHP+ + VLDR+++
Sbjct:   114 KPFSFGHPSVESVLDRYVS 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query:     6 QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
             +KN G +KIE+ ++  +S  QVTFSKR+ GLF K SELC LC AE+AI++ SP  +A++F
Sbjct:     3 RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query:    66 GHPNPDDVLDRFL 78
             GHPN + +LD  L
Sbjct:    63 GHPNVNKLLDHSL 75

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 38/72 (52%), Positives = 54/72 (75%)

Query:     6 QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
             +  KG QKIE+K++E +S  QVTFSKR+ GLF KASELC L GAE+ +++ SP  + F+F
Sbjct:     3 RSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSF 62

Query:    66 GHPNPDDVLDRF 77
             GHP+  +++ RF
Sbjct:    63 GHPSVQELIHRF 74

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 38/72 (52%), Positives = 53/72 (73%)

Query:     6 QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
             +K  G +K+EI ++ ++S  QVTFSKRK GLF KASE C LC A++A+++ SP  + F+F
Sbjct:     3 KKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSF 62

Query:    66 GHPNPDDVLDRF 77
             GHPN D +LD F
Sbjct:    63 GHPNVDVLLDHF 74

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2825756 AGL97 "AGAMOUS-like 97" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 7.8e-17, Sum P(3) = 7.8e-17
 Identities = 34/71 (47%), Positives = 52/71 (73%)

Query:    12 QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIV---IMSPHKRAF-TFGH 67
             +KI I++++ K+ R V+FSKR+KGL++KASELC+L  AE+AI+   + S    AF +FGH
Sbjct:     6 RKIAIEKIQNKNPRAVSFSKRRKGLYSKASELCLLSDAEIAIIATPVSSNSNAAFYSFGH 65

Query:    68 PNPDDVLDRFL 78
              + D+V+  FL
Sbjct:    66 SSVDNVVAAFL 76

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2193922 AT1G72350 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 40/82 (48%), Positives = 56/82 (68%)

Query:     4 SKQKN----KGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPH 59
             +KQK     KG QKIEIK +  ++ RQVTFSKR+ GLF KA+EL VLCGA++ I+  S  
Sbjct:    33 TKQKKPKTTKGRQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRC 92

Query:    60 KRAFTFGHPNPDDVLDRFLTGA 81
              R ++FG+ N   ++D++L  A
Sbjct:    93 DRIYSFGNVN--SLIDKYLRKA 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 50/146 (34%), Positives = 71/146 (48%)

Query:     6 QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
             +K KG QKI IK++E+   R VTFSKR  G++ K SEL +LCG EVA +  S   + +TF
Sbjct:     4 KKTKGKQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTF 63

Query:    66 GHPNPDDVLDRFLTG---AGAESSLAATTVEDEKLERLKQEYVXXXXXXXXXXXXXXXIA 122
             G P+   V +RFL G   + + SSL     +  K++ L ++Y                 A
Sbjct:    64 GSPSFQAVAERFLNGDASSSSSSSLVMNAHKQAKIQELCKKYNRLVEELKVDEVKVKKAA 123

Query:   123 KKRGNDRANGVFWW--DQYSIDDMER 146
                     N   WW  D   + D E+
Sbjct:   124 ALAETRVVNKDVWWKVDPNDVKDHEK 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206016 AGL55 "AGAMOUS-like 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 35/72 (48%), Positives = 50/72 (69%)

Query:    12 QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLC-GAEVAIVI--MSPHKRA--FTFG 66
             +KIE+KR+E K+ R V F+KRK GLF+KASELC+L  G ++AI+   +S H  A  ++FG
Sbjct:     6 RKIEMKRIEDKNVRAVAFTKRKSGLFHKASELCLLSPGTQIAILATPLSSHSHASFYSFG 65

Query:    67 HPNPDDVLDRFL 78
             H + D V+   L
Sbjct:    66 HSSVDHVVSSLL 77

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 48/141 (34%), Positives = 68/141 (48%)

Query:     2 EASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKR 61
             +A  +K KG QKIE+K+VE    R +TFSKRK G+F K +EL  +C  EVA +I S  K+
Sbjct:     6 QAKGRKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKK 65

Query:    62 AFTFGHPNPDDVLDRFLTGAGAESSLAATT---VEDEKLERLKQ--EYVXXXXXXXXXXX 116
              +TF HP+   V DR    +  E      T   VE  K  RL    + +           
Sbjct:    66 PYTFAHPSMKKVADRLKNPSRQEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDL 125

Query:   117 XXXXIAKKRGNDRANGVFWWD 137
                 + K+  N++     WW+
Sbjct:   126 EKLKLLKESRNEKKLDKMWWN 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	1e-29
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-25
smart00432	59	smart00432, MADS, MADS domain	3e-23
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	7e-23
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	5e-16
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	3e-10

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  104 bits (263), Expect = 1e-29
 Identities = 35/77 (45%), Positives = 50/77 (64%)

Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G  KIEIKR+E  + RQVTFSKR+ GL  KA EL VLC AEVA++I S   + + F  P+
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 70 PDDVLDRFLTGAGAESS 86
           + +++R+   +G+   
Sbjct: 61 MEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 92.2 bits (230), Expect = 7e-25
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 12 QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68
           KIEIKR+E K++RQVTFSKR+ GLF KASEL VLC AEVA+++ SP  + + F   
Sbjct: 3  GKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 88.0 bits (219), Expect = 3e-23
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68
          G +KIEIKR+E K+ RQVTFSKR+ GLF KA EL VLC AEVA+++ SP  + + F  P
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 87.7 bits (218), Expect = 7e-23
 Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 12 QKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGH-PNP 70
          +KI+IKR+E K  R VTFSKR++GLF KASEL  LCGAEVA+++ SP  + + F      
Sbjct: 3  KKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEV 62

Query: 71 DDVLDRF 77
          + V+ RF
Sbjct: 63 EGVISRF 69

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 69.0 bits (169), Expect = 5e-16
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 17 KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
          KR+E KS RQVTFSKR+ G+F KA EL VLC AEVA++I S   + + +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 13  KIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68
           KI I  +  K+ R VTFSKRK G+  KA EL VL G EV ++++S +    TF  P
Sbjct: 85  KIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
smart00432	59	MADS MADS domain.	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.92
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.82
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.46
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.8

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=2.6e-33  Score=196.29  Aligned_cols=72  Identities=47%  Similarity=0.825  Sum_probs=70.4

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhccC
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGA   81 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~~   81 (219)
                      ||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|++|+|++|++++||+||+..+
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~   72 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS   72 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999998864

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=2.8e-32  Score=222.93  Aligned_cols=76  Identities=54%  Similarity=0.881  Sum_probs=72.6

Q ss_pred             CCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCC--CchhhhhhhccCCCC
Q 044792            9 KGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN--PDDVLDRFLTGAGAE   84 (219)
Q Consensus         9 mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~ps--v~~Vl~Ry~~~~~~~   84 (219)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|.||+|+  |++|++||.....+.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~   78 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS   78 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence            8999999999999999999999999999999999999999999999999999999999998  999999998865544

>smart00432 MADS MADS domain

Probab=99.96  E-value=5.2e-30  Score=169.89  Aligned_cols=59  Identities=59%  Similarity=0.997  Sum_probs=58.1

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCC
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP   68 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~p   68 (219)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999887

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=3.1e-30  Score=183.35  Aligned_cols=73  Identities=49%  Similarity=0.807  Sum_probs=69.4

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCC-CchhhhhhhccCC
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN-PDDVLDRFLTGAG   82 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~ps-v~~Vl~Ry~~~~~   82 (219)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +++++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCH
Confidence            799999999999999999999999999999999999999999999999999999997777 9999999988653

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=3.9e-29  Score=165.81  Aligned_cols=59  Identities=59%  Similarity=0.941  Sum_probs=57.5

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCC
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP   68 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~p   68 (219)
                      ||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999775

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.92  E-value=5.7e-27  Score=150.50  Aligned_cols=51  Identities=61%  Similarity=1.005  Sum_probs=46.3

Q ss_pred             eEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCC
Q 044792           17 KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGH   67 (219)
Q Consensus        17 ~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~   67 (219)
                      ++|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999964

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.82  E-value=3.1e-21  Score=162.37  Aligned_cols=70  Identities=37%  Similarity=0.607  Sum_probs=66.2

Q ss_pred             cccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhh
Q 044792            5 KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVL   74 (219)
Q Consensus         5 ~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl   74 (219)
                      +|++.||+||+|+||+|+..|.+||||||.||||||+|||||+|.+|-++|.|++|-+|+|++|-.+.||
T Consensus        58 ~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i  127 (338)
T KOG0015|consen   58 GKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMI  127 (338)
T ss_pred             CccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccc
Confidence            5788999999999999999999999999999999999999999999999999999999999999865444

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.46  E-value=2.6e-14  Score=125.72  Aligned_cols=69  Identities=39%  Similarity=0.548  Sum_probs=65.2

Q ss_pred             CCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhh
Q 044792            8 NKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDR   76 (219)
Q Consensus         8 ~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~R   76 (219)
                      +|||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|.+|..+.|+.|....|+.-
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999987666643

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.80  E-value=2.4e-08  Score=73.27  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044792           95 EKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAAS  174 (219)
Q Consensus        95 ~~~~~l~~~~~~l~~qlek~ekk~~e~l~~~~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e~  174 (219)
                      ...+.+..++..+..+++.        +....++..|+       +|++|+++||..|+..|+..+..|+.|+.++++++
T Consensus        12 ~~~e~~~~e~~~L~~~~~~--------L~~~~R~~~Ge-------dL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~   76 (100)
T PF01486_consen   12 SQHEELQQEIAKLRKENES--------LQKELRHLMGE-------DLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQ   76 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHH--------HHHHHhccccc-------cccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            5667888888888888877        33344444454       99999999999999999999999999999999999


Q ss_pred             hhcCCCCcccccCCCCCCCchhhhHHHHHHhhh
Q 044792          175 VASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEG  207 (219)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~f~~e~~~l~~~~~~  207 (219)
                      +.      .+.   .+...+..+|..|+..+.+
T Consensus        77 i~------~l~---~ke~~l~~en~~L~~~~~e  100 (100)
T PF01486_consen   77 IE------ELK---KKERELEEENNQLRQKIEE  100 (100)
T ss_pred             HH------HHH---HHHHHHHHHHHHHHHHhcC
Confidence            98      777   7889999999999988764

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-10
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		2e-10
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		4e-10
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		5e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		8e-10
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-09
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-09
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		7e-06
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		8e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 10  GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
           G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   R F +   +
Sbjct: 2   GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 61
Query: 70  PDDVLDRFLTGAGAESSLAATTVEDEKLERLKQ 102
            D VL ++   +    S   T +    LE LK+
Sbjct: 62  MDRVLLKYTEYSEPHESRTNTDI----LETLKR 90

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 10  GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
           G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   R F +   +
Sbjct: 1   GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 70  PDDVLDRFLTGAGAESSLAATTVEDEKLERLKQ 102
            D VL ++   +    S   T +    LE LK+
Sbjct: 61  MDRVLLKYTEYSEPHESRTNTDI----LETLKR 89

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 70 PDDVLDRF 77
           D VL ++
Sbjct: 61 MDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 70 PDDVLDRF 77
           D VL ++
Sbjct: 61 MDKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VL  AE+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 70 PDDVLDRF 77
           D VL ++
Sbjct: 61 MDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 1  MEASKQKNKGLQK----IEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIM 56
          +E     N G QK    IEIK +E K+ R VTFSKRK G+  KA EL VL G +V ++++
Sbjct: 4  IEEGTPTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVV 63
Query: 57 SPHKRAFTFGHPNPDDVLDR 76
          S     +TF  P  + ++ +
Sbjct: 64 SETGLVYTFSTPKFEPIVTQ 83

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 70 PDDVLDRF 77
           D VL ++
Sbjct: 61 MDKVLLKY 68

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 6  QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
          +K +G  KI+++ ++ K  R  TFSKRK G+  KA EL  L G +V +++ S     +TF
Sbjct: 6  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65
Query: 66 G 66
Sbjct: 66 A 66

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 6  QKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
          +K +G  KI+++ ++ K  R  TFSKRK G+  KA EL  L G +V +++ S     +TF
Sbjct: 7  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66
Query: 66 G 66
Sbjct: 67 A 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
1hbx_A	92	SRF, serum response factor; gene regulation, trans	8e-31
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-30
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-29
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-23
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  107 bits (270), Expect = 8e-31
 Identities = 25/89 (28%), Positives = 43/89 (48%)

Query: 2  EASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKR 61
              +K +G  KI+++ ++ K  R  TFSKRK G+  KA EL  L G +V +++ S    
Sbjct: 3  AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH 62

Query: 62 AFTFGHPNPDDVLDRFLTGAGAESSLAAT 90
           +TF       ++      A  ++ L + 
Sbjct: 63 VYTFATRKLQPMITSETGKALIQTCLNSP 91

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  108 bits (270), Expect = 1e-30
 Identities = 26/101 (25%), Positives = 44/101 (43%)

Query: 2   EASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKR 61
               +K +G  KI+++ ++ K  R  TFSKRK G+  KA EL  L G +V +++ S    
Sbjct: 2   AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH 61

Query: 62  AFTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLERLKQ 102
            +TF       ++      A  ++ L +            Q
Sbjct: 62  VYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQ 102

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  104 bits (261), Expect = 2e-29
 Identities = 32/92 (34%), Positives = 50/92 (54%)

Query: 2   EASKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKR 61
             +  + K  +KIEIK +E K+ R VTFSKRK G+  KA EL VL G +V ++++S    
Sbjct: 9   PTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL 68

Query: 62  AFTFGHPNPDDVLDRFLTGAGAESSLAATTVE 93
            +TF  P  + ++ +       ++ L A   E
Sbjct: 69  VYTFSTPKFEPIVTQQEGRNLIQACLNAPDDE 100

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 87.9 bits (218), Expect = 5e-23
 Identities = 30/86 (34%), Positives = 47/86 (54%)

Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 70 PDDVLDRFLTGAGAESSLAATTVEDE 95
           D VL ++        S   + + + 
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDIVEA 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 86.7 bits (215), Expect = 1e-22
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 70 PDDVLDRFLTGAGAESS 86
           D VL ++        S
Sbjct: 61 MDKVLLKYTEYNEPHES 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 54/194 (27%)

Query: 45  VLCGAEVAIVIMSPHK-----RAFTFGHPNPDDVLDRFLTGAGAESSLAATTVEDEKLER 99
           +L   E+  +IMS        R F       ++++ +F              VE+     
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--------------VEEV---- 86

Query: 100 LKQEYVELLNRLKEEEKKRDEIAKKRGNDRA---NGVFWWDQYSIDDMERDELELYLKS- 155
           L+  Y  L++ +K E+++   + +     R    N    + +Y++    R +  L L+  
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQA 143

Query: 156 LEKLKTSV-----------KSKVDELAAASVASNNFVNQFNIDNNIP-IDFGSEFDDLCC 203
           L +L+ +            K+    +A     S     +   D  I  ++  +       
Sbjct: 144 LLELRPAKNVLIDGVLGSGKT-W--VALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETV 198

Query: 204 LLEGTNEDGILRNL 217
           L        +L+ L
Sbjct: 199 LE-------MLQKL 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 92/202 (45%)

Query: 25  RQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAE 84
           R   + K ++ L                   + P K     G           + G+G +
Sbjct: 133 RLQPYLKLRQALLE-----------------LRPAKNVLIDG-----------VLGSG-K 163

Query: 85  SSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDM 144
           + +A       K++                                  +FW     ++  
Sbjct: 164 TWVALDVCLSYKVQCK----------------------------MDFKIFW-----LNLK 190

Query: 145 ERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLC-- 202
             +  E  L+ L+KL   +               N+ ++ +  +NI +   S   +L   
Sbjct: 191 NCNSPETVLEMLQKLLYQIDP-------------NWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 203 --------CLLEGTNEDGILRN 216
                   CLL       +L N
Sbjct: 238 LKSKPYENCLL-------VLLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.5e-37  Score=219.51  Aligned_cols=78  Identities=38%  Similarity=0.623  Sum_probs=74.2

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhccCCCCccc
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSL   87 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~~~~~~~~   87 (219)
                      ||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||+||...+++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999877665544

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.1e-37  Score=214.73  Aligned_cols=74  Identities=39%  Similarity=0.654  Sum_probs=69.9

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhccCCC
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGA   83 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~~~~   83 (219)
                      ||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||+||...+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999886543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=5.5e-37  Score=218.59  Aligned_cols=76  Identities=30%  Similarity=0.474  Sum_probs=72.4

Q ss_pred             CcccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792            4 SKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT   79 (219)
Q Consensus         4 ~~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~   79 (219)
                      .+|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||++|..
T Consensus         5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A            5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999997743

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.2e-36  Score=219.60  Aligned_cols=75  Identities=39%  Similarity=0.584  Sum_probs=70.5

Q ss_pred             cccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792            5 KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT   79 (219)
Q Consensus         5 ~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~   79 (219)
                      ++++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|..
T Consensus        12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999954

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=2.4e-36  Score=219.37  Aligned_cols=73  Identities=32%  Similarity=0.502  Sum_probs=71.2

Q ss_pred             cccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhh
Q 044792            5 KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRF   77 (219)
Q Consensus         5 ~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry   77 (219)
                      +|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus         5 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-28
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	5e-28
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	4e-27

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 3e-28
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query: 9  KGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68
          K  +KIEIK +E K+ R VTFSKRK G+  KA EL VL G +V ++++S     +TF  P
Sbjct: 2  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 61

Query: 69 NPDDVLDRFLTGAGAESSLAAT 90
            + ++ +       ++ L A 
Sbjct: 62 KFEPIVTQQEGRNLIQACLNAP 83

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (247), Expect = 5e-28
 Identities = 29/68 (42%), Positives = 43/68 (63%)

Query: 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN 69
          G +KI+I R+  +  RQVTF+KRK GL  KA EL VLC  E+A++I +   + F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 70 PDDVLDRF 77
           D VL ++
Sbjct: 61 MDKVLLKY 68

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (242), Expect = 4e-27
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 9  KGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68
          +G  KI+++ ++ K  R  TFSKRK G+  KA EL  L G +V +++ S     +TF   
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 69 NPDDVLDRF 77
              ++   
Sbjct: 62 KLQPMITSE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-38  Score=211.70  Aligned_cols=70  Identities=41%  Similarity=0.714  Sum_probs=68.7

Q ss_pred             CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792           10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT   79 (219)
Q Consensus        10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~   79 (219)
                      ||+||+|++|+|+..|+|||+|||.||||||+|||+||||+||+|||||+|++|+|++|++++|++||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999964

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=211.26  Aligned_cols=72  Identities=31%  Similarity=0.481  Sum_probs=70.1

Q ss_pred             CCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792            8 NKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT   79 (219)
Q Consensus         8 ~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~   79 (219)
                      ++||+||+|++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.|+++|..
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999999999999999954

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-36  Score=210.28  Aligned_cols=71  Identities=41%  Similarity=0.607  Sum_probs=69.7

Q ss_pred             CCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792            9 KGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT   79 (219)
Q Consensus         9 mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~   79 (219)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|++|++||..
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~   72 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   72 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999976