Citrus Sinensis ID: 044796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHccccHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccEEEEEEc
Coil and Loop (DISEMBL)
KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVAsvperaesasapeakegqsasekkevapapemAELRSIChsnrgicflklGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIlefdpsnnqAKRTILRKLKEMGNSilgrfgmstdnfkavkdpntgaysisfqk
Flexible Loop (DISEMBL)
kalneaneaklegnklfaegKYEEALLQYEVALRVASVPeraesasapeakegqsasekkevapAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKkilefdpsnnQAKRTILRKLKEMGNSILGrfgmstdnfkavkdpntgaysisfqk
Low Complexity Region (SEG)
KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRvasvperaesasapeaKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQK
Disordered region (IsUnstruct)
***************LFAEGKYEEALLQYEVALRVA***********************************RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF**********ILRKL****NSILGRFG***********************
Disordered Region (DISOPRED)
*ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA**ISFQK
Disordered Region (DISEMBL)
********AKLEGNKLFAEGKYEEALLQYEVALRVAS*****************************EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQK
Disordered Region (DISPRO)
*ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER*E***********************EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRxxxxxxxxxxxxxxxxxxxxxLEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q91Z38	292	Tetratricopeptide repeat	yes	no	0.790	0.503	0.357	1e-24
Q99614	292	Tetratricopeptide repeat	yes	no	0.817	0.520	0.363	2e-24
Q3ZBR5	292	Tetratricopeptide repeat	yes	no	0.817	0.520	0.353	6e-24
Q02790	459	Peptidyl-prolyl cis-trans	no	no	0.682	0.276	0.372	3e-15
Q9QVC8	458	Peptidyl-prolyl cis-trans	no	no	0.682	0.277	0.365	6e-15
P30416	458	Peptidyl-prolyl cis-trans	no	no	0.682	0.277	0.365	6e-15
Q9TRY0	459	Peptidyl-prolyl cis-trans	no	no	0.688	0.278	0.356	1e-14
A4K2V0	309	Mitochondrial import rece	no	no	0.677	0.407	0.344	1e-13
O94826	608	Mitochondrial import rece	no	no	0.677	0.207	0.335	1e-13
Q80ZX8	901	Sperm-associated antigen	no	no	0.704	0.145	0.347	2e-13

>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 46/193 (23%)

Query: 10  KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMA 69
           K EGN+ F  G Y EA   Y  AL                           ++ PA    
Sbjct: 120 KEEGNERFKRGDYMEAESSYSQAL---------------------------QMCPAC-FQ 151

Query: 70  ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAD 129
           + RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+ D
Sbjct: 152 KDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALED 211

Query: 130 MKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRFGMSTDNFKA 171
            K +LE DPS +QA+   +R                  KLK++GN +L  FG+ST+NF+ 
Sbjct: 212 YKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQI 271

Query: 172 VKDPNTGAYSISF 184
            +D +TG+YSI+F
Sbjct: 272 KQDSSTGSYSINF 284

Mus musculus (taxid: 10090)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 46/198 (23%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           E+   K EGN+ F +G Y EA   Y  AL                           E+ P
Sbjct: 115 ESTRLKEEGNEQFKKGDYIEAESSYSRAL---------------------------EMCP 147

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           +    E RSI  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +
Sbjct: 148 SCFQKE-RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLD 206

Query: 125 EAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRFGMST 166
           EA+ D K ILE DPS +QA+   +R                  KLK++GN +L  FG+ST
Sbjct: 207 EALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLST 266

Query: 167 DNFKAVKDPNTGAYSISF 184
           +NF+  +D +TG+YSI+F
Sbjct: 267 ENFQIKQDSSTGSYSINF 284

Homo sapiens (taxid: 9606)

>sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 46/198 (23%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           E++  K EGN+ F +G Y EA   Y  AL+                    S  +K     
Sbjct: 115 ESSRLKEEGNEQFKKGDYIEAESSYTRALQTCP-----------------SCFQKD---- 153

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
                  RS+  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +
Sbjct: 154 -------RSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLD 206

Query: 125 EAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRFGMST 166
           EA+ D K ILE DPS +QA+   +R                  KLK++GN +L  FG+ST
Sbjct: 207 EALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLST 266

Query: 167 DNFKAVKDPNTGAYSISF 184
           +NF+  +D +TG+YSI+F
Sbjct: 267 ENFQIKQDSSTGSYSINF 284

Bos taurus (taxid: 9913)

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 74/145 (51%), Gaps = 18/145 (12%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L ++   K  G   F EGKY++ALLQY+   ++ S  E   S S  EA++ Q+       
Sbjct: 267 LEQSTIVKERGTVYFKEGKYKQALLQYK---KIVSWLEYESSFSNEEAQKAQA------- 316

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                   LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 317 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 368

Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
           FE A AD +K+L+  P+N  AK  +
Sbjct: 369 FELARADFQKVLQLYPNNKAAKTQL 393

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 73/145 (50%), Gaps = 18/145 (12%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L ++N  K  G   F EGKY++ALLQY+   ++ S  E   S S  E ++  +       
Sbjct: 267 LEQSNIVKERGTVYFKEGKYKQALLQYK---KIVSWLEYESSFSGEEMQKVHA------- 316

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                   LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 317 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 368

Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
           F+ A AD +K+L+  PSN  AK  +
Sbjct: 369 FDLARADFQKVLQLYPSNKAAKTQL 393

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 73/145 (50%), Gaps = 18/145 (12%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L ++N  K  G   F EGKY++ALLQY+   ++ S  E   S S  E ++  +       
Sbjct: 267 LEQSNIVKERGTAYFKEGKYKQALLQYK---KIVSWLEYESSFSGEEMQKVHA------- 316

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                   LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 317 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 368

Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
           F+ A AD +K+L+  PSN  AK  +
Sbjct: 369 FDLARADFQKVLQLYPSNKAAKTQL 393

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 18/146 (12%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L ++   K  G   F EGKY++A+LQY+   ++ S  E   S S  +A++ Q+       
Sbjct: 267 LEQSTIVKERGTVYFKEGKYKQAVLQYK---KIVSWLEYESSFSDEDAEKAQA------- 316

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                   LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 317 --------LRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVND 368

Query: 123 FEEAIADMKKILEFDPSNNQAKRTIL 148
           F+ A AD +K+L+  PSN  AK  ++
Sbjct: 369 FDLARADFQKVLQLYPSNKAAKAQLV 394

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 25/151 (16%)

Query: 8   EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           E +  GN+ F  G+Y EA   Y  ALRV     +A+ +S PE +                
Sbjct: 11  ELRAAGNESFRNGQYAEASALYGRALRVL----QAQGSSDPEEE---------------- 50

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                S+ +SNR  C LK G   + IK+CT AL L P  +K L+RRA A+E LE +  A 
Sbjct: 51  -----SVLYSNRAACHLKDGNCRDCIKDCTSALALVPFSIKPLLRRASAYEALEKYPMAY 105

Query: 128 ADMKKILEFDPSNNQAKRTILRKLKEMGNSI 158
            D K +L+ D S   A   I R  + + +S+
Sbjct: 106 VDYKTVLQIDDSVTSALEGINRMTRALMDSL 136

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 29/155 (18%)

Query: 2   ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE 61
           +L+ A  AK +GNK F  GKYE+A+                           Q  +E   
Sbjct: 110 SLDRAQAAKNKGNKYFKAGKYEQAI---------------------------QCYTEAIS 142

Query: 62  VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
           + P  +  +L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL+
Sbjct: 143 LCPTEKNVDL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLD 201

Query: 122 HFEEAIADMKKILEFDPSNNQAKRTILRK-LKEMG 155
           + +E + D+  +   +   NQ    +  K LK +G
Sbjct: 202 NKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLG 236

Receptor that accelerates the import of all mitochondrial precursor proteins.

Homo sapiens (taxid: 9606)

>sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 30/161 (18%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           +A +  +  K  GN+LF  G++ EA  QY VA  +A + E   SA+A E           
Sbjct: 425 RAADNPSGLKRRGNELFRGGQFAEAAAQYSVA--IAQL-EPTGSANADEL---------- 471

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                       SI +SNR  C+LK G   + I++C +ALEL+P  +K L+RRA A+E L
Sbjct: 472 ------------SILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETL 519

Query: 121 EHFEEAIADMKKILEFDP----SNNQAKRTILRKLKEMGNS 157
           E +  A  D K +L+ D     +++ A R I R L E+  S
Sbjct: 520 EQYRNAYVDYKTVLQIDCGIQLASDSANR-IARILTELDGS 559

Plays a role in fertilization. Binds GTP and has GTPase activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
224142329	278	predicted protein [Populus trichocarpa]	0.865	0.579	0.627	2e-66
359806795	268	uncharacterized protein LOC100808386 [Gl	0.860	0.597	0.622	4e-65
255585483	253	heat shock protein 70 (HSP70)-interactin	0.854	0.628	0.630	2e-64
224091857	188	predicted protein [Populus trichocarpa]	0.865	0.856	0.607	6e-63
357505397	271	Tetratricopeptide repeat protein [Medica	0.860	0.590	0.596	2e-61
225445748	262	PREDICTED: tetratricopeptide repeat prot	0.860	0.610	0.602	1e-60
297802984	277	tetratricopeptide repeat-containing prot	0.854	0.574	0.605	5e-60
356527411	276	PREDICTED: tetratricopeptide repeat prot	0.860	0.579	0.585	6e-60
211853238	261	tetratricopeptide repeat protein [Solanu	0.860	0.613	0.583	1e-59
18087888	548	putative tetratricopeptide repeat protei	0.860	0.291	0.568	1e-59

>gi|224142329|ref|XP_002324511.1| predicted protein [Populus trichocarpa] gi|222865945|gb|EEF03076.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 148/204 (72%), Gaps = 43/204 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           + + EANEAKLEGN+LF  G+YEEALLQY+VAL+V          S P+           
Sbjct: 100 RGIEEANEAKLEGNRLFGNGQYEEALLQYDVALQV----------SPPDV---------- 139

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P   ELRSICHSNRG+CFLKLGKFE++IKEC+KALELNP+YMKAL+RR EAHEKL
Sbjct: 140 -----PSSIELRSICHSNRGVCFLKLGKFEDTIKECSKALELNPSYMKALVRRGEAHEKL 194

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRF 162
           EHFEEAIADMKKILE DPSN+QAKRTI R                  KLK+MGN++LGRF
Sbjct: 195 EHFEEAIADMKKILELDPSNDQAKRTIRRLEPLAAAKREKMNEEMIGKLKDMGNTLLGRF 254

Query: 163 GMSTDNFKAVKDPNTGAYSISFQK 186
           GMS DNFKAV+DPNTG+YSISFQ+
Sbjct: 255 GMSVDNFKAVQDPNTGSYSISFQR 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806795|ref|NP_001241306.1| uncharacterized protein LOC100808386 [Glycine max] gi|255639737|gb|ACU20162.1| unknown [Glycine max]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 148/204 (72%), Gaps = 44/204 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KALN+ANEAK+EGNKLF EGKYEEALLQYE+AL+           +AP+           
Sbjct: 91  KALNQANEAKVEGNKLFVEGKYEEALLQYELALQ-----------AAPDM---------- 129

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P   E+RSICHSNRG+CFLKLGK++ +IKECTKALELNP Y+KAL+RR EAHEKL
Sbjct: 130 -----PSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYIKALVRRGEAHEKL 184

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTI------------------LRKLKEMGNSILGRF 162
           EHFEEAIADMKKILE D SN+QA++TI                  + KLK+MGNS+LGRF
Sbjct: 185 EHFEEAIADMKKILEIDLSNDQARKTIRQLEPLAAEKREKMKEEMIAKLKDMGNSVLGRF 244

Query: 163 GMSTDNFKAVKDPNTGAYSISFQK 186
           GMS DNFKAVKDPNTG+YSISFQ+
Sbjct: 245 GMSVDNFKAVKDPNTGSYSISFQR 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585483|ref|XP_002533434.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223526722|gb|EEF28954.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 147/203 (72%), Gaps = 44/203 (21%)

Query: 2   ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE 61
           AL EANEAKLEGNK+F EGKYEEALL+YEVAL+VA           PE            
Sbjct: 77  ALEEANEAKLEGNKVFGEGKYEEALLKYEVALQVA-----------PEI----------- 114

Query: 62  VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
               P   ELRSICHSNRG+CFLKLGK+E++IKECTKALELN +Y+KAL+RR EAHEKLE
Sbjct: 115 ----PSSVELRSICHSNRGVCFLKLGKYEDTIKECTKALELNSSYIKALLRRGEAHEKLE 170

Query: 122 HFEEAIADMKKILEFDPSNNQAKRTI------------------LRKLKEMGNSILGRFG 163
           HFEEAIADMKKILE DPSN+QAK+ I                  + KLKE+GN++LGRFG
Sbjct: 171 HFEEAIADMKKILELDPSNDQAKKAIYLLEPLAAIKREKMKEEMIGKLKELGNNVLGRFG 230

Query: 164 MSTDNFKAVKDPNTGAYSISFQK 186
           MS DNFKAVKDPNTG+YS+SFQ+
Sbjct: 231 MSVDNFKAVKDPNTGSYSVSFQR 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091857|ref|XP_002309374.1| predicted protein [Populus trichocarpa] gi|222855350|gb|EEE92897.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 145/204 (71%), Gaps = 43/204 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           + + E NEAKLEGN+LF  G+YEEALLQYE+AL+VA           P+           
Sbjct: 10  RGVEEGNEAKLEGNRLFGNGQYEEALLQYELALQVA-----------PQ----------- 47

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P   ELRSICH NRG+CFLKLGK+E++IKEC++ALELNP+Y KAL+RR EAHEKL
Sbjct: 48  ---DVPSSVELRSICHFNRGVCFLKLGKYEDTIKECSRALELNPSYTKALVRRGEAHEKL 104

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRF 162
           EHFEEAIADMKK LEFDPSN+QAK+TI R                  KLKEMGNS+LGRF
Sbjct: 105 EHFEEAIADMKKTLEFDPSNDQAKKTIRRLEPLAAEKREKMKEEMIGKLKEMGNSLLGRF 164

Query: 163 GMSTDNFKAVKDPNTGAYSISFQK 186
           GMS DNFKAV+DPNTG+YSISFQ+
Sbjct: 165 GMSIDNFKAVQDPNTGSYSISFQR 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505397|ref|XP_003622987.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355498002|gb|AES79205.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 143/208 (68%), Gaps = 48/208 (23%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KAL+EANEAK+EGNKLF +GKYEEAL QYE AL+VA           P+           
Sbjct: 90  KALSEANEAKVEGNKLFVDGKYEEALSQYEHALQVA-----------PDM---------- 128

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P   E+RSICH+NR +CF+KLGK+E +IKECTKALELNP Y+KAL+RR EAHEKL
Sbjct: 129 -----PSSVEIRSICHANRAVCFMKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKL 183

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR----------------------KLKEMGNSI 158
           EHFEEAIADMKKILE DPSN QA ++I R                      KLKEMGNS+
Sbjct: 184 EHFEEAIADMKKILEIDPSNGQAGKSIRRLEPLAAVKREKMKEEMMGWCVEKLKEMGNSV 243

Query: 159 LGRFGMSTDNFKAVKDPNTGAYSISFQK 186
           LGRFGMS DNFKAVKDPNTG+YSIS ++
Sbjct: 244 LGRFGMSLDNFKAVKDPNTGSYSISMER 271

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445748|ref|XP_002272630.1| PREDICTED: tetratricopeptide repeat protein 1 [Vitis vinifera] gi|297743714|emb|CBI36597.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 141/204 (69%), Gaps = 44/204 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KAL +AN+AK+EGNKLF  G+Y+EAL QYE+AL+VA  PE                    
Sbjct: 85  KALAQANDAKMEGNKLFGAGQYQEALSQYELALQVA--PEM------------------- 123

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P   E+RSICH+N+ ICFLKL K E++IKECTKALELNPTYMKAL RRAEAHEKL
Sbjct: 124 -----PSSVEIRSICHANQAICFLKLEKIEDAIKECTKALELNPTYMKALTRRAEAHEKL 178

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRF 162
           EHFEEA+AD KKILE DPSN+QA+R I R                  KLK+MGNS+LGRF
Sbjct: 179 EHFEEALADTKKILELDPSNSQARRAIPRLEQLAKEKQEKLKEEMIGKLKDMGNSLLGRF 238

Query: 163 GMSTDNFKAVKDPNTGAYSISFQK 186
           GMS DNFKAVKDP TG YSISFQ+
Sbjct: 239 GMSVDNFKAVKDPETGQYSISFQR 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802984|ref|XP_002869376.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315212|gb|EFH45635.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 137/203 (67%), Gaps = 44/203 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KA+ EANEAK+EGNKLF  G YEEAL +Y  AL +                         
Sbjct: 100 KAMAEANEAKVEGNKLFVNGLYEEALSKYASALEL------------------------- 134

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
            V   PE  ELRSICH NRG+CFLKLGK EE+IKECTKALELNPTY KAL+RRAEAHEKL
Sbjct: 135 -VQDFPESIELRSICHLNRGVCFLKLGKCEETIKECTKALELNPTYTKALVRRAEAHEKL 193

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRF 162
           EHFE+A+ D+KKILE DP N+QAK+ I R                  KLKEMGNSILGRF
Sbjct: 194 EHFEDAVTDLKKILELDPLNDQAKKGIRRLEPLAAEKREKMKEEAITKLKEMGNSILGRF 253

Query: 163 GMSTDNFKAVKDPNTGAYSISFQ 185
           GMS DNFKAVKDPNTG+YS+SFQ
Sbjct: 254 GMSVDNFKAVKDPNTGSYSLSFQ 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527411|ref|XP_003532304.1| PREDICTED: tetratricopeptide repeat protein 1-like [Glycine max]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 141/200 (70%), Gaps = 40/200 (20%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KAL++ANEAK+EGNKLF EGKYEEALLQYE+AL+VAS                       
Sbjct: 103 KALDQANEAKVEGNKLFVEGKYEEALLQYELALQVAS----------------------- 139

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P   E+RSICHSNRG+CFLKL K++ +IKECTKALELNP Y+KAL+RR EAHEKL
Sbjct: 140 ---DMPSSVEIRSICHSNRGVCFLKLEKYDNTIKECTKALELNPVYVKALVRRGEAHEKL 196

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR--------------KLKEMGNSILGRFGMST 166
           EHF++AI DMKKILE DPSN+QA++TI R              ++K+MGNS L   G+  
Sbjct: 197 EHFDKAIDDMKKILEIDPSNDQARKTIRRLETLAAEKREKMIAQVKDMGNSFLRYLGLKE 256

Query: 167 DNFKAVKDPNTGAYSISFQK 186
           +NFKAVKDPNTG+YSISFQ+
Sbjct: 257 NNFKAVKDPNTGSYSISFQR 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211853238|emb|CAP16663.1| tetratricopeptide repeat protein [Solanum lycopersicum]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/204 (58%), Positives = 139/204 (68%), Gaps = 44/204 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KAL +AN+AK+EGN LF +G YEEAL +YE+AL+VA                        
Sbjct: 84  KALAQANDAKVEGNALFKDGLYEEALSKYELALQVA------------------------ 119

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
             A  P   E+RSICH+NR  CF KLGK EE+IKECTKALELNPTY+KAL+RRAEAHEKL
Sbjct: 120 --ADIPSSTEIRSICHANRAACFTKLGKHEETIKECTKALELNPTYIKALVRRAEAHEKL 177

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTI------------------LRKLKEMGNSILGRF 162
           EHFEEAI DM KILE +PS++QA+RT+                  + KLKEMGNSILGRF
Sbjct: 178 EHFEEAITDMTKILELEPSHDQARRTVILLKPLADEKREKMKEEMIGKLKEMGNSILGRF 237

Query: 163 GMSTDNFKAVKDPNTGAYSISFQK 186
           GMS DNFK VKDPNTG+YS+ FQK
Sbjct: 238 GMSVDNFKTVKDPNTGSYSVQFQK 261

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18087888|gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat protein [Oryza sativa Japonica Group]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 142/204 (69%), Gaps = 44/204 (21%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           KA ++AN+AK EGNK F  G+YE AL QYE AL++A+  E AE                 
Sbjct: 371 KARSQANDAKAEGNKFFGAGEYERALSQYETALQIAAELESAE----------------- 413

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                    ++RS CHSNR +CFLKLGK++E+IKECTKALELNP+Y+KAL+RR EAHEKL
Sbjct: 414 ---------DIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKL 464

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR------------------KLKEMGNSILGRF 162
           EH++EAIADMKKI+E DPSN QAKR++ R                  KLK++GNS+LGRF
Sbjct: 465 EHYDEAIADMKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLKDLGNSVLGRF 524

Query: 163 GMSTDNFKAVKDPNTGAYSISFQK 186
           GMS DNFKAVKDPNTG+YSISFQ+
Sbjct: 525 GMSVDNFKAVKDPNTGSYSISFQQ 548

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2118776	277	TPR1 "tetratricopeptide repeat	0.494	0.332	0.720	3.6e-42
UNIPROTKB|B6GVA2	261	int106 "Tetratricopeptide repe	0.462	0.329	0.732	3.3e-31
UNIPROTKB|G4MWP2	283	MGG_01886 "Uncharacterized pro	0.198	0.130	0.648	3.4e-19
RGD|1303049	610	Tomm70a "translocase of outer	0.543	0.165	0.378	3.6e-17
UNIPROTKB|O94826	608	TOMM70A "Mitochondrial import	0.543	0.166	0.378	4.6e-17
ASPGD|ASPL0000002635	275	AN9498 [Emericella nidulans (t	0.204	0.138	0.631	4.6e-17
UNIPROTKB|Q08E34	609	TOMM70A "Translocase of outer	0.543	0.165	0.378	4.6e-17
MGI|MGI:106295	611	Tomm70a "translocase of outer	0.543	0.165	0.368	9.8e-17
UNIPROTKB|Q15785	309	TOMM34 "Mitochondrial import r	0.548	0.330	0.310	1.4e-16
MGI|MGI:1914077	292	Ttc1 "tetratricopeptide repeat	0.548	0.349	0.403	2.9e-16

TAIR|locus:2118776 TPR1 "tetratricopeptide repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 67/93 (72%), Positives = 80/93 (86%)

Query:    62 VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
             V   PE  ELRSIC+ NRG+CFLKLGK EE+IKECTKALELNPTY KAL+RRAEAHEKLE
Sbjct:   135 VQELPESIELRSICYLNRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLE 194

Query:   122 HFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154
             HFE+A+ D+KKILE DPSN+QA++ I R+L+ +
Sbjct:   195 HFEDAVTDLKKILELDPSNDQARKGI-RRLEPL 226

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0051879 "Hsp90 protein binding" evidence=IPI

UNIPROTKB|B6GVA2 int106 "Tetratricopeptide repeat protein" [Solanum lycopersicum (taxid:4081)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 63/86 (73%), Positives = 74/86 (86%)

Query:    63 APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
             A  P   E+RSICH+NR  CF KLGK EE+IKECTKALELNPTY+KAL+RRAEAHEKLEH
Sbjct:   120 ADIPSSTEIRSICHANRAACFTKLGKHEETIKECTKALELNPTYIKALVRRAEAHEKLEH 179

Query:   123 FEEAIADMKKILEFDPSNNQAKRTIL 148
             FEEAI DM KILE +PS++QA+RT++
Sbjct:   180 FEEAITDMTKILELEPSHDQARRTVI 205

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G4MWP2 MGG_01886 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 130 (50.8 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query:   150 KLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQK 186
             KLKE+GN IL  FG+STDNFK  +DP TG YS++FQ+
Sbjct:   243 KLKELGNGILKPFGLSTDNFKMEQDPKTGGYSMNFQQ 279

GO:0005575 "cellular_component" evidence=ND

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
 Identities = 39/103 (37%), Positives = 62/103 (60%)

Query:    54 QSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRR 113
             Q  +E   + P  + A+L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RR
Sbjct:   137 QCYTEAISLCPTEKNADL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 195

Query:   114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK-LKEMG 155
             A+AHEKL++ +E + D+  +   +   N+    +  K LK +G
Sbjct:   196 AKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLG 238

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

UNIPROTKB|O94826 TOMM70A "Mitochondrial import receptor subunit TOM70" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
 Identities = 39/103 (37%), Positives = 61/103 (59%)

Query:    54 QSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRR 113
             Q  +E   + P  +  +L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RR
Sbjct:   135 QCYTEAISLCPTEKNVDL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 193

Query:   114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK-LKEMG 155
             A+AHEKL++ +E + D+  +   +   NQ    +  K LK +G
Sbjct:   194 AKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLG 236

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=TAS

GO:0008320 "protein transmembrane transporter activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000002635 AN9498 [Emericella nidulans (taxid:162425)]

 Score = 132 (51.5 bits), Expect = 4.6e-17, Sum P(3) = 4.6e-17
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query:   147 ILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF 184
             ++ KLKE+GN IL  FG+STDNFK V+DP TG YS++F
Sbjct:   236 MMGKLKELGNGILKPFGLSTDNFKFVQDPKTGGYSVNF 273

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q08E34 TOMM70A "Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
 Identities = 39/103 (37%), Positives = 61/103 (59%)

Query:    54 QSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRR 113
             Q  +E   + P  +  +L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RR
Sbjct:   136 QCYTEAISLCPTEKNVDL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 194

Query:   114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK-LKEMG 155
             A+AHEKL++ +E + D+  +   +   NQ    +  K LK +G
Sbjct:   195 AKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLG 237

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:106295 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (yeast)" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
 Identities = 38/103 (36%), Positives = 61/103 (59%)

Query:    54 QSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRR 113
             Q  +E   + P  +  +L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RR
Sbjct:   138 QCYTEAISLCPTEKNVDL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 196

Query:   114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK-LKEMG 155
             A+AHEKL++ +E + D+  +   +   N+    +  K LK +G
Sbjct:   197 AKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLG 239

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q15785 TOMM34 "Mitochondrial import receptor subunit TOM34" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 32/103 (31%), Positives = 67/103 (65%)

Query:    51 KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKAL 110
             K+G      ++ + +   + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA 
Sbjct:   205 KKGNHKKAIEKYSESLLCSNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAF 264

Query:   111 IRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
              RRA+AH+ L+ ++ + AD+  +L+ +P N  A++ + +++K+
Sbjct:   265 YRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQK-LRQEVKQ 306

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/104 (40%), Positives = 69/104 (66%)

Query:    52 EGQSA-SEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKAL 110
             E +S+ S+  ++ PA    + RS+  SNR    +K  K E +I +C+KA++LNPTY++A+
Sbjct:   134 EAESSYSQALQMCPACFQKD-RSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAI 192

Query:   111 IRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154
             +RRAE +EK +  +EA+ D K +LE DPS +QA+   +R  K++
Sbjct:   193 LRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQI 236

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-11
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	9e-08
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	8e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	1e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.003
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.0 bits (151), Expect = 4e-13
 Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 33/133 (24%)

Query: 7   NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAP 66
                 GN  +  G Y+EAL  YE AL +                              P
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELD-----------------------------P 31

Query: 67  EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126
           + A+     + N    + KLGK+EE++++  KALEL+P   KA      A+ KL  +EEA
Sbjct: 32  DNAD----AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87

Query: 127 IADMKKILEFDPS 139
           +   +K LE DP+
Sbjct: 88  LEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + KLG ++E+++   KALEL+P    A    A A+ KL  +EEA+ D +K LE D
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 138 PSNNQAKRTILRKLKEMGN 156
           P N +A   +     ++G 
Sbjct: 65  PDNAKAYYNLGLAYYKLGK 83

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIADM 130
            +    N G    KLG ++E+I+   KALEL+P   +A    A A+ KL + +EEA+ D+
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 131 KKILEFDP 138
           +K LE DP
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.8 bits (121), Expect = 9e-08
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
           +SNR  C   LG +E+ +++ T ALEL+P Y KAL RRA A++ L  + +A+ D+     
Sbjct: 163 YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCI 222

Query: 136 FDPSNN-QAKRTILRKLKEMGNS 157
            D   N Q+ + + R LK+   S
Sbjct: 223 IDGFRNEQSAQAVERLLKKFAES 245

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 89  FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           F  ++   T+A++L+P   +    RA+A+ KL +F EA+AD  K +E DPS  +A
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 34/102 (33%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           + A   K  GN LF  G Y+EA+  YE AL +   P+ AE                    
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELD--PDNAE-------------------- 38

Query: 64  PAPEMAELRSICHSNRGICFLKLGK-FEESIKECTKALELNP 104
                       + N  + +LKLGK +EE++++  KALEL+P
Sbjct: 39  -----------AYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.9 bits (97), Expect = 8e-06
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTY 106
             N G  +LKLGK++E+++   KALELNP  
Sbjct: 4   LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 40.1 bits (95), Expect = 1e-05
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 75  CHSNRGICFLKLGKFEESIKECTKALELNPTY 106
              N G  +LKLG ++E+++   KALEL+P  
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 60  KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
           + +   P  AEL    +++R    +KLG F E++ +  KA+EL+P+  KA +R+  A  K
Sbjct: 27  QAIDLDPNNAEL----YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82

Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTI 147
           LE ++ A A ++K     P +++  + I
Sbjct: 83  LEEYQTAKAALEKGASLAPGDSRFTKLI 110

Length = 356

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 31/111 (27%)

Query: 16  LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSIC 75
           L  +GKYE+A+ Q+E A+     P+ A S                               
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARS------------------------------- 137

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126
             N G+C LK G F+++ K  T+AL+++P   ++L+  AE +     +++A
Sbjct: 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 75  CHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAHEKLEHFEEAI 127
             +N  +   +LG ++E+++   KALEL       +P   +AL   A  +  L  ++EA+
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 128 ADMKKILEFDPS 139
             ++K L    +
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 43  ESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL 102
           ES +    +E   A EK       ++ E  +I  + RG      GK  E++ + +K++EL
Sbjct: 303 ESKADESYEEAARAFEKA--LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360

Query: 103 NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140
           +P   ++ I+RA  + +L   ++A  D  K L+ +  +
Sbjct: 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.0 bits (79), Expect = 0.002
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTY 106
             N G+ + KLG +EE+++   KALEL+P  
Sbjct: 4   LYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 33.6 bits (78), Expect = 0.003
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140
           +AL     A+ KL  +EEA+   +K LE DP+N
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 83  FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140
            L+ G ++E++     AL   P   +AL+   EA  +     EA A ++  L  DP +
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 18  AEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS----ASEKKEVAPAPEMAELR 72
           ++G   EA+   E A ++     RA+        + GQ     A+ KK     P+ A L 
Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL- 467

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              H+  G  +L  G   ++ +   KAL + P +  A    A    +  + ++AI   +K
Sbjct: 468 ---HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK 524

Query: 133 ILEFDPSNNQA 143
           +L  DP N +A
Sbjct: 525 VLTIDPKNLRA 535

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
KOG4234	271	consensus TPR repeat-containing protein [General f	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
KOG0553	304	consensus TPR repeat-containing protein [General f	99.88
PRK15359	144	type III secretion system chaperone protein SscB;	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.83
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.81
PRK15359	144	type III secretion system chaperone protein SscB;	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
KOG1125	579	consensus TPR repeat-containing protein [General f	99.79
KOG1126	638	consensus DNA-binding cell division cycle control	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.79
PRK12370	553	invasion protein regulator; Provisional	99.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.76
PRK12370	553	invasion protein regulator; Provisional	99.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.76
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.73
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.73
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.72
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.72
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.72
KOG1125	579	consensus TPR repeat-containing protein [General f	99.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.72
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.7
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.7
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.69
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.67
PLN02789	320	farnesyltranstransferase	99.67
PLN02789	320	farnesyltranstransferase	99.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.67
KOG1129	478	consensus TPR repeat-containing protein [General f	99.66
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.66
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.65
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.62
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.62
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.61
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.61
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.61
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.6
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.58
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.57
PRK14574	822	hmsH outer membrane protein; Provisional	99.56
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.55
KOG2076	895	consensus RNA polymerase III transcription factor	99.55
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.54
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.54
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.53
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.53
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.53
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.51
PRK15331	165	chaperone protein SicA; Provisional	99.51
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.51
KOG2003	840	consensus TPR repeat-containing protein [General f	99.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.49
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.49
PRK10803	263	tol-pal system protein YbgF; Provisional	99.48
KOG1129	478	consensus TPR repeat-containing protein [General f	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.47
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.46
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.44
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.43
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.42
KOG2003	840	consensus TPR repeat-containing protein [General f	99.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.41
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.4
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.4
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.4
PF12688	120	TPR_5: Tetratrico peptide repeat	99.39
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.38
PF13512	142	TPR_18: Tetratricopeptide repeat	99.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.38
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.38
PF13371	73	TPR_9: Tetratricopeptide repeat	99.38
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
PRK11906	458	transcriptional regulator; Provisional	99.35
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.34
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.34
KOG4555	175	consensus TPR repeat-containing protein [Function	99.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.33
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.31
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.31
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.29
PRK15331	165	chaperone protein SicA; Provisional	99.29
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.29
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.27
PRK10803	263	tol-pal system protein YbgF; Provisional	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.25
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.24
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.24
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.23
KOG2076	895	consensus RNA polymerase III transcription factor	99.22
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.22
PF12688	120	TPR_5: Tetratrico peptide repeat	99.22
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.21
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.2
PF13371	73	TPR_9: Tetratricopeptide repeat	99.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.18
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.15
PRK14574	822	hmsH outer membrane protein; Provisional	99.14
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.13
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.07
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.03
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.02
KOG4234	271	consensus TPR repeat-containing protein [General f	99.02
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.01
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.99
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.99
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.99
PRK11906	458	transcriptional regulator; Provisional	98.98
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.98
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.97
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.96
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.94
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.89
PF13428	44	TPR_14: Tetratricopeptide repeat	98.88
PF13512	142	TPR_18: Tetratricopeptide repeat	98.87
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.84
PF13428	44	TPR_14: Tetratricopeptide repeat	98.81
KOG4555	175	consensus TPR repeat-containing protein [Function	98.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.79
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.78
PF13431	34	TPR_17: Tetratricopeptide repeat	98.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.75
PLN03077	857	Protein ECB2; Provisional	98.74
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.69
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.68
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.65
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.65
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.65
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.58
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.57
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.56
PLN03218	1060	maturation of RBCL 1; Provisional	98.56
PLN03218	1060	maturation of RBCL 1; Provisional	98.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.52
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.51
PF13431	34	TPR_17: Tetratricopeptide repeat	98.47
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.45
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.43
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.42
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.41
KOG2471	696	consensus TPR repeat-containing protein [General f	98.38
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.36
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.35
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.33
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.3
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.3
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.29
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.27
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.26
PRK10941	269	hypothetical protein; Provisional	98.26
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.25
PRK04841	903	transcriptional regulator MalT; Provisional	98.25
PRK04841	903	transcriptional regulator MalT; Provisional	98.24
KOG1586	288	consensus Protein required for fusion of vesicles	98.24
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.23
PLN03077	857	Protein ECB2; Provisional	98.22
KOG1585	308	consensus Protein required for fusion of vesicles	98.21
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.2
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.18
KOG1586	288	consensus Protein required for fusion of vesicles	98.17
KOG1310	758	consensus WD40 repeat protein [General function pr	98.17
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.14
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.1
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.08
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.07
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.06
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.06
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.03
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	98.03
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.02
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	98.01
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.0
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.99
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.98
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.91
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.91
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.91
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.89
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.85
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.84
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.75
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.73
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.72
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.72
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.7
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.68
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.64
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.63
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.61
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.59
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.53
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.5
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.48
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.46
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.45
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.45
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.45
PRK10941	269	hypothetical protein; Provisional	97.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.44
KOG2471	696	consensus TPR repeat-containing protein [General f	97.42
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.41
COG2912	269	Uncharacterized conserved protein [Function unknow	97.4
KOG3364	149	consensus Membrane protein involved in organellar	97.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.32
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	97.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.28
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.28
KOG3364	149	consensus Membrane protein involved in organellar	97.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.25
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.17
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.16
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.15
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.15
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.13
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.12
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.08
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.06
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.04
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.0
KOG1310	758	consensus WD40 repeat protein [General function pr	96.91
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.91
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.91
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.9
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.8
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.79
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.78
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.76
KOG1585	308	consensus Protein required for fusion of vesicles	96.73
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.69
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.69
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.67
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.67
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.59
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.58
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.54
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.51
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	96.49
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.44
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.39
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.36
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.35
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.32
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.24
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.2
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.19
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.19
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.16
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.16
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.13
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.12
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.08
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.07
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.02
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.84
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.8
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.64
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.57
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.55
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.48
COG2912	269	Uncharacterized conserved protein [Function unknow	95.41
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.29
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.2
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.2
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.18
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.06
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.05
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.02
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.94
COG3947	361	Response regulator containing CheY-like receiver a	94.93
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.92
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	94.5
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.44
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.32
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.18
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.14
COG4455	273	ImpE Protein of avirulence locus involved in tempe	94.02
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.75
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.59
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.51
KOG1258	577	consensus mRNA processing protein [RNA processing	93.39
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.24
COG3947	361	Response regulator containing CheY-like receiver a	93.24
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	92.9
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.82
PF04212	69	MIT: MIT (microtubule interacting and transport) d	92.73
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.56
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.54
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.49
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.43
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.38
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.25
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.18
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.13
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.93
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.76
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	91.67
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.65
KOG1258	577	consensus mRNA processing protein [RNA processing	91.41
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.4
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	91.21
PHA02537	230	M terminase endonuclease subunit; Provisional	90.76
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.71
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	90.13
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.55
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.54
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	89.27
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	89.12
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	89.01
KOG3783	546	consensus Uncharacterized conserved protein [Funct	88.89
PF12753	404	Nro1: Nuclear pore complex subunit Nro1; InterPro:	88.89
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.87
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	88.46
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	88.22
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	88.14
KOG3783	546	consensus Uncharacterized conserved protein [Funct	88.05
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	87.73
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	87.27
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.18
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.13
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	87.02
PF12854	34	PPR_1: PPR repeat	86.84
cd02656	75	MIT MIT: domain contained within Microtubule Inter	86.67
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.57
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.57
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.54
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.51
KOG2581	493	consensus 26S proteasome regulatory complex, subun	85.34
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	84.96
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	84.88
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	84.86
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	84.62
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	84.35
KOG1463	411	consensus 26S proteasome regulatory complex, subun	84.29
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	84.15
KOG4014	248	consensus Uncharacterized conserved protein (conta	84.14
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.07
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.0
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	83.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.64
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.38
COG4259	121	Uncharacterized protein conserved in bacteria [Fun	83.31
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	83.06
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.6
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.36
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.15
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.45
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	81.24
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.56
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	80.54
PF15469	182	Sec5: Exocyst complex component Sec5	80.33
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.15

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-22  Score=150.54  Aligned_cols=165  Identities=18%  Similarity=0.267  Sum_probs=143.3

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   79 (186)
                      -.+++.++|+.+-..|+..+|..+|.+++.+.|.++++..++|.++ ..+..+.+.    +++...|.    .+.+..++
T Consensus       319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~----~aaa~nNL  394 (966)
T KOG4626|consen  319 FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE----FAAAHNNL  394 (966)
T ss_pred             chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh----hhhhhhhH
Confidence            3578889999999999999999999999999999999999999887 445554444    44555554    44889999


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  159 (186)
                      |.+|.++|++++|+.+|++++.+.|+..+++.++|.+|..+|+.+.|+.+|.+|+.++|...+++.+|+.++..     .
T Consensus       395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-----s  469 (966)
T KOG4626|consen  395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-----S  469 (966)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-----c
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999     9


Q ss_pred             ccccccchhhhhcccCCCC
Q 044796          160 GRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~  178 (186)
                      |...+||..|+.++..+|+
T Consensus       470 Gni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  470 GNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             CCcHHHHHHHHHHHccCCC
Confidence            9999999999999644443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-22  Score=149.85  Aligned_cols=163  Identities=19%  Similarity=0.122  Sum_probs=133.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-hcCchh----HHHhhCCCcchhHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-EGQSAS----EKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      -++++.++|+++-..+.|+.|+.+|.+|+.+.|.+..++-+++.++. ++..+.    +.+++...|...    .+++++
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~----~Ay~Nl  326 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP----DAYNNL  326 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch----HHHhHH
Confidence            35778888888888888888888888888888888888888888874 444433    445555555444    888889


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  159 (186)
                      |.++...|+..+|+.+|++++.+.|+++++.+++|.++..+|.+++|...|+++++..|+...++.+|+.++..     +
T Consensus       327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-----q  401 (966)
T KOG4626|consen  327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-----Q  401 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-----c
Confidence            98888889999999999999999898888888888888888888888888888888888888888888888888     8


Q ss_pred             ccccccchhhhhcccCC
Q 044796          160 GRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       160 ~~~~~A~~~~~~~~~~~  176 (186)
                      |++++|+.+|+.+++..
T Consensus       402 gnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  402 GNLDDAIMCYKEALRIK  418 (966)
T ss_pred             ccHHHHHHHHHHHHhcC
Confidence            88888888888885443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=5.2e-21  Score=123.95  Aligned_cols=156  Identities=56%  Similarity=0.852  Sum_probs=142.0

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      .+..++.+..-|+.++..|+|.+|...|..||.+.|.                          .+.  ..++-+|.++|.
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~--------------------------~~~--e~rsIly~Nraa  142 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS--------------------------TST--EERSILYSNRAA  142 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc--------------------------ccH--HHHHHHHhhhHH
Confidence            3567889999999999999999999999999999998                          333  335688999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH------------
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR------------  149 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~------------  149 (186)
                      +.++++.++.|+..+.++++++|.+..++.++|.+|.++..|++|+..|.+.++.+|...++.....+            
T Consensus       143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkm  222 (271)
T KOG4234|consen  143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKM  222 (271)
T ss_pred             HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998777665544            


Q ss_pred             ------HHHHHHHHhhccccccchhhhhcccCCCCccccccc
Q 044796          150 ------KLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQ  185 (186)
Q Consensus       150 ------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  185 (186)
                            -|..+|+.+++.|..+...|+...+|+.++|+++|+
T Consensus       223 Kee~m~kLKdlGN~iL~pFGlStdnFqmvqd~nTGsySi~fk  264 (271)
T KOG4234|consen  223 KEEMMEKLKDLGNFILSPFGLSTDNFQMVQDPNTGSYSINFK  264 (271)
T ss_pred             HHHHHHHHHHhhhhhcccccccccceeeeeCCCCCceeEEec
Confidence                  567788889999999999999999999999999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.5e-21  Score=152.02  Aligned_cols=166  Identities=16%  Similarity=0.191  Sum_probs=147.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.+++..|++++|+..|++++.++|.+...+..+|.+. ..++.+.+...+.......|.++.+++.+|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999877 445555555444333333344569999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++..     .|+++
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-----~g~~~  484 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD-----QNKFD  484 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----ccCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999     99999


Q ss_pred             ccchhhhhcccC
Q 044796          164 MSTDNFKAVKDP  175 (186)
Q Consensus       164 ~A~~~~~~~~~~  175 (186)
                      +|++.|++++..
T Consensus       485 ~A~~~~~~Al~l  496 (615)
T TIGR00990       485 EAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.6e-22  Score=149.16  Aligned_cols=164  Identities=19%  Similarity=0.176  Sum_probs=142.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-GQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..++.|..+|+|+..+++.+.|+++|++|+.++|...-++..+|..... ...+.+...+.......+.+..+|+.+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            4678999999999999999999999999999999999999999988733 334444444444444444455999999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      |.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++..     ++++
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~-----~~~~  573 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS-----LGRY  573 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh-----hcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888     7777


Q ss_pred             cccchhhhhc
Q 044796          163 GMSTDNFKAV  172 (186)
Q Consensus       163 ~~A~~~~~~~  172 (186)
                      ++|...++..
T Consensus       574 ~eal~~LEeL  583 (638)
T KOG1126|consen  574 VEALQELEEL  583 (638)
T ss_pred             HHHHHHHHHH
Confidence            7777777655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=4.4e-21  Score=131.30  Aligned_cols=119  Identities=34%  Similarity=0.525  Sum_probs=112.6

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      ....|+.++..|+.+.+.++|++|+..|.+||.++|.                                 ++..|+++|.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---------------------------------nAVyycNRAA  123 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---------------------------------NAVYYCNRAA  123 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---------------------------------cchHHHHHHH
Confidence            3567899999999999999999999999999999999                                 3389999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +|.++|.++.|++.++.++.+||.+..+|.++|.++..+|++++|++.|+++|+++|++...+.+|..+-..
T Consensus       124 Ay~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  124 AYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             HHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999866655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.85  E-value=1.7e-19  Score=115.41  Aligned_cols=116  Identities=10%  Similarity=0.110  Sum_probs=106.9

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..+..+|..+...|++++|+.+|++++..+|.                                 ++.++..+|.++..
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------------------------------~~~a~~~lg~~~~~   70 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW---------------------------------SWRAHIALAGTWMM   70 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------------cHHHHHHHHHHHHH
Confidence            445777899999999999999999999999999                                 34889999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      .|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|.+++.+.|+++..+..++.+...+
T Consensus        71 ~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         71 LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877663

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.83  E-value=1.1e-19  Score=120.15  Aligned_cols=161  Identities=21%  Similarity=0.172  Sum_probs=139.5

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc----hhHHHhhCCCcchhHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS----ASEKKEVAPAPEMAELRSICHS   77 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~   77 (186)
                      -+.+.+..++|..|+..|++..|..-++++|+.+|++..+|..++.++ ..+..    +.+.+++...|.+.    ++++
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----dVLN  107 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----DVLN  107 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc----chhh
Confidence            356788999999999999999999999999999999999999999988 44444    44445566666555    9999


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           78 NRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      +.|..+..+|++++|...|++|+..  .|..+..+-++|.|..+.|+++.|..+|+++++++|+.+.+...++..+..  
T Consensus       108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~--  185 (250)
T COG3063         108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK--  185 (250)
T ss_pred             hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh--
Confidence            9999999999999999999999973  334577899999999999999999999999999999999999999988888  


Q ss_pred             HHhhccccccchhhhhc
Q 044796          156 NSILGRFGMSTDNFKAV  172 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~  172 (186)
                         .|++..|.-.+++.
T Consensus       186 ---~~~y~~Ar~~~~~~  199 (250)
T COG3063         186 ---AGDYAPARLYLERY  199 (250)
T ss_pred             ---cccchHHHHHHHHH
Confidence               88888887777654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.1e-19  Score=130.66  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=142.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ++.+.-+|+-|.-.++.++|+.+|++|++++|....+|..+|..+ .......+....+......|.+..+|+.+|++|.
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            455566788888899999999999999999999999999999998 4455544444444444444444599999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      .++-..=|+-+|++|++..|+++..|..+|.||.++++.++|+.+|.+++.....+..++..+|+.+..     +++.++
T Consensus       410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~-----l~d~~e  484 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE-----LKDLNE  484 (559)
T ss_pred             HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH-----HHhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999     888889


Q ss_pred             cchhhhhcc
Q 044796          165 STDNFKAVK  173 (186)
Q Consensus       165 A~~~~~~~~  173 (186)
                      |..+|++.+
T Consensus       485 Aa~~yek~v  493 (559)
T KOG1155|consen  485 AAQYYEKYV  493 (559)
T ss_pred             HHHHHHHHH
Confidence            999888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.82  E-value=4.6e-19  Score=142.31  Aligned_cols=171  Identities=12%  Similarity=0.011  Sum_probs=142.1

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      .++..|..+...|++++|+.+|+++++.+|++......++... ..++.+.+...+.......|. +..+..+|.++.+.
T Consensus       544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l  622 (987)
T PRK09782        544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence            4667788889999999999999999999988876665544332 335555555444333333332 58899999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++..     .|++++|+
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-----lGd~~eA~  697 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-----LDDMAATQ  697 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998     99999999


Q ss_pred             hhhhhcccCCCCcccccc
Q 044796          167 DNFKAVKDPNTGAYSISF  184 (186)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~  184 (186)
                      ..|++++...|+...+.+
T Consensus       698 ~~l~~Al~l~P~~a~i~~  715 (987)
T PRK09782        698 HYARLVIDDIDNQALITP  715 (987)
T ss_pred             HHHHHHHhcCCCCchhhh
Confidence            999999766666655543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.8e-19  Score=130.49  Aligned_cols=169  Identities=18%  Similarity=0.198  Sum_probs=150.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .++++...|.-++-.|++-.|..-|+++|+++|.+...+..++..+ ...+.....+.+.......|.+++.|+.+|++.
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            4788999999999999999999999999999999999888888877 445555555554444444444559999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      +-++++++|+..|++++.++|.+..++..++.+.++++.++++...|+.+++..|+.++++...+.++..     +++|+
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-----qqqFd  479 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-----QQQFD  479 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-----HHhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999     99999


Q ss_pred             ccchhhhhcccCCCC
Q 044796          164 MSTDNFKAVKDPNTG  178 (186)
Q Consensus       164 ~A~~~~~~~~~~~~~  178 (186)
                      .|++.|..++...+.
T Consensus       480 ~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999755443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.81  E-value=3.2e-19  Score=114.16  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      +..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++.++|.++..  
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~--  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM--  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--
Confidence            556899999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHhhccccccchhhhhcccCCCC
Q 044796          156 NSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                         .|++++|+..|.+++...|+
T Consensus       105 ---~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359        105 ---MGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             ---cCCHHHHHHHHHHHHHhCCC
Confidence               99999999999999644443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=1.3e-18  Score=135.74  Aligned_cols=170  Identities=14%  Similarity=0.084  Sum_probs=137.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..++.+|.++...|++++|+.+|+++++.+|+++.++..+|.+. ..++.+.+...+.......|.....+..+|.++
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999887 556666665554444444444558899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--hhcc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS--ILGR  161 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~~  161 (186)
                      ..+|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|++++.++|.+...+..+...+...+..  ..++
T Consensus       444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~  523 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD  523 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999998655444332221111111  2578


Q ss_pred             ccccchhhhhccc
Q 044796          162 FGMSTDNFKAVKD  174 (186)
Q Consensus       162 ~~~A~~~~~~~~~  174 (186)
                      +++|+..+++++.
T Consensus       524 ~~eA~~~~~kAl~  536 (615)
T TIGR00990       524 FIEAENLCEKALI  536 (615)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888887753

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=2.9e-18  Score=117.86  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=139.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+..+..+|..++..|++++|+..++++++.+|.+..++..++... ..++.+.+...+.......+.....+..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999888876 44555554443332222223344788999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796           83 FLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG  160 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  160 (186)
                      +...|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++..+|.++.++..++.++..     .|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~  183 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-----RG  183 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-----cC
Confidence            999999999999999999853  45677889999999999999999999999999999999999999988888     89


Q ss_pred             cccccchhhhhccc
Q 044796          161 RFGMSTDNFKAVKD  174 (186)
Q Consensus       161 ~~~~A~~~~~~~~~  174 (186)
                      ++++|...+++++.
T Consensus       184 ~~~~A~~~~~~~~~  197 (234)
T TIGR02521       184 QYKDARAYLERYQQ  197 (234)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=4.9e-19  Score=130.25  Aligned_cols=167  Identities=16%  Similarity=0.153  Sum_probs=140.4

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc-------------------------
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS-------------------------   55 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~-------------------------   55 (186)
                      ..+++++|..+|.+....++-..|+..++++++++|++.+++-.++..+ .++-.                         
T Consensus       315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~  394 (579)
T KOG1125|consen  315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE  394 (579)
T ss_pred             ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence            3478899999999999999999999999999999999999988887443 11110                         


Q ss_pred             --------------------hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 044796           56 --------------------ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE  115 (186)
Q Consensus        56 --------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  115 (186)
                                          +....+....+.  ..++++...+|.+|...|+|++|+.+|+.||..+|++...|.++|-
T Consensus       395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~--~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA  472 (579)
T KOG1125|consen  395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPT--KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA  472 (579)
T ss_pred             cccccCCcCCCCHHHHHHHHHHHHHHHHhCCC--CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence                                001111111111  1456889999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          116 AHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       116 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ++..-.+.++|+..|++|+++.|....+++++|.++..     +|.|++|.++|-.+++.
T Consensus       473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-----lG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-----LGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-----hhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988888     99999999999887643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.3e-18  Score=129.76  Aligned_cols=166  Identities=19%  Similarity=0.199  Sum_probs=146.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +.++-.+|..+....+++.|..+|+.||..+|++-.+|+++|.++ +.++.+.++.-+.......|.+..+.+.+|..+.
T Consensus       455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~  534 (638)
T KOG1126|consen  455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH  534 (638)
T ss_pred             chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence            456777888999999999999999999999999999999999987 6666665554443333333344499999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      ++|+.++|+..+++|+.++|.++-..+.+|.+++.++++++|+..+++.-++-|+...++..+|+++..     .|..+.
T Consensus       535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~-----~~~~~~  609 (638)
T KOG1126|consen  535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR-----LGNTDL  609 (638)
T ss_pred             HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-----HccchH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999     899999


Q ss_pred             cchhhhhcccCC
Q 044796          165 STDNFKAVKDPN  176 (186)
Q Consensus       165 A~~~~~~~~~~~  176 (186)
                      |+..|--+.+.+
T Consensus       610 Al~~f~~A~~ld  621 (638)
T KOG1126|consen  610 ALLHFSWALDLD  621 (638)
T ss_pred             HHHhhHHHhcCC
Confidence            999998775433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=1e-17  Score=119.58  Aligned_cols=131  Identities=20%  Similarity=0.149  Sum_probs=111.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|..+...|++++|+..|+++++++|+                                 .+.+|..+|.++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------------------------~~~a~~~lg~~~  108 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------------------------MADAYNYLGIYL  108 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------------------------------CHHHHHHHHHHH
Confidence            34678999999999999999999999999999999                                 338899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.....+. ....     .++++
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~~~-----~~~~~  182 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY-LAES-----KLDPK  182 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHc-----cCCHH
Confidence            99999999999999999999999999999999999999999999999999999999874222111 1122     56788


Q ss_pred             ccchhhhhcc
Q 044796          164 MSTDNFKAVK  173 (186)
Q Consensus       164 ~A~~~~~~~~  173 (186)
                      +|+..|.+..
T Consensus       183 ~A~~~l~~~~  192 (296)
T PRK11189        183 QAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHHH
Confidence            8888886553

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=5.6e-18  Score=130.38  Aligned_cols=164  Identities=12%  Similarity=0.022  Sum_probs=136.2

Q ss_pred             HHHHHHHhHhHHHH---------cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHH
Q 044796            5 EANEAKLEGNKLFA---------EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSI   74 (186)
Q Consensus         5 ~a~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   74 (186)
                      .+..+..+|.++..         .+++++|+..++++++++|+++.++..+|.+. ..++.+.+...+.......|.++.
T Consensus       294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  373 (553)
T PRK12370        294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD  373 (553)
T ss_pred             cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            34566777776653         34589999999999999999999999998876 555555555554444444444558


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD-PSNNQAKRTILRKLKE  153 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  153 (186)
                      +++.+|.++...|++++|+..++++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.++..
T Consensus       374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~  453 (553)
T PRK12370        374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL  453 (553)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998887777888888999999999999999875 7889899999988888


Q ss_pred             HHHHhhccccccchhhhhcc
Q 044796          154 MGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~  173 (186)
                           .|++++|+..+.+..
T Consensus       454 -----~G~~~eA~~~~~~~~  468 (553)
T PRK12370        454 -----KGKHELARKLTKEIS  468 (553)
T ss_pred             -----CCCHHHHHHHHHHhh
Confidence                 999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.77  E-value=1.2e-17  Score=112.20  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH-EKLEH--FEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|...++++++.+|+++.++..+|
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA  151 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA  151 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            4489999999999999999999999999999999999999999985 67787  59999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ..+..     .|++++|+.+|+++++.
T Consensus       152 ~~~~~-----~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        152 SDAFM-----QADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHH-----cCCHHHHHHHHHHHHhh
Confidence            88888     99999999999998633

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.76  E-value=1.3e-17  Score=130.37  Aligned_cols=163  Identities=16%  Similarity=0.134  Sum_probs=128.8

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchh----HHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSAS----EKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..|..+...|++++|+..|++++..+|+++.++..+|..+ ..+...+    +...+.......|..+.++..+|.++..
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            4467778889999999999999999999998888888776 3333332    2333222222233345888999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS  165 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A  165 (186)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..++.++..     .|++++|
T Consensus       297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-----~G~~deA  371 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-----AGKTSEA  371 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----CCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999888777777777777     8889999


Q ss_pred             chhhhhcccCCCC
Q 044796          166 TDNFKAVKDPNTG  178 (186)
Q Consensus       166 ~~~~~~~~~~~~~  178 (186)
                      +..|++++...|.
T Consensus       372 ~~~l~~al~~~P~  384 (656)
T PRK15174        372 ESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHHhChh
Confidence            9999888544333

>PRK12370 invasion protein regulator; Provisional

Probab=99.76  E-value=2.6e-17  Score=126.67  Aligned_cols=157  Identities=13%  Similarity=-0.004  Sum_probs=128.6

Q ss_pred             HHHHhHhHHHH---cccHHHHHHHHHHHHhccCCChhhhhccchhhhh----------cCc----hhHHHhhCCCcchhH
Q 044796            8 EAKLEGNKLFA---EGKYEEALLQYEVALRVASVPERAESASAPEAKE----------GQS----ASEKKEVAPAPEMAE   70 (186)
Q Consensus         8 ~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~   70 (186)
                      .++..|...+.   .+.+++|+.+|+++++++|+++.++..++.++..          ++.    ..+.+++...|.   
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---  336 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---  336 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---
Confidence            35556654443   3568899999999999999999998888764311          112    233344555554   


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                       ++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+...++.+
T Consensus       337 -~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        337 -NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence             4489999999999999999999999999999999999999999999999999999999999999999998877666655


Q ss_pred             HHHHHHHhhccccccchhhhhcc
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +..     .|++++|+..+++++
T Consensus       416 ~~~-----~g~~eeA~~~~~~~l  433 (553)
T PRK12370        416 TYY-----HTGIDDAIRLGDELR  433 (553)
T ss_pred             HHh-----ccCHHHHHHHHHHHH
Confidence            555     789999999998875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.76  E-value=6.3e-17  Score=118.01  Aligned_cols=117  Identities=23%  Similarity=0.394  Sum_probs=109.4

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ..+...|..++..|+|++|+.+|.+++.++|+                                 ++.++..+|.++..+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---------------------------------~~~a~~~~a~~~~~~   49 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---------------------------------NAELYADRAQANIKL   49 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHHHHc
Confidence            45778899999999999999999999999999                                 337889999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      |++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+...+..
T Consensus        50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         50 GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999988777543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.75  E-value=2.1e-16  Score=100.04  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=96.0

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.-+.++..|..++..|++++|...|+-+...+|.                                 ++..|+++|.++
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---------------------------------~~~y~~gLG~~~   79 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---------------------------------SFDYWFRLGECC   79 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------------------------cHHHHHHHHHHH
Confidence            34567889999999999999999999999999999                                 348999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      ..+|+|++|+..|.+++.++|++|.++.+.|.|+...|+.+.|...|+.++......
T Consensus        80 Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         80 QAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999987433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.74  E-value=1.3e-16  Score=109.68  Aligned_cols=163  Identities=17%  Similarity=0.163  Sum_probs=135.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcc--hhHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPE--MAELRSICHSNRGI   81 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~   81 (186)
                      .+..+..+|..+...|++++|+..|+++++..|.+..++..++... ..++...+...+.....  ..+.....+..+|.
T Consensus        64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  143 (234)
T TIGR02521        64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL  143 (234)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            3567888999999999999999999999999999999888888776 44555444443322111  11223467888999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ++...|++++|+..+++++..+|+++.++..+|.++...|++++|...+++++...|.++..+..++.++..     .|+
T Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  218 (234)
T TIGR02521       144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA-----LGD  218 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----Hhh
Confidence            999999999999999999999999999999999999999999999999999999999888888888877777     778


Q ss_pred             ccccchhhhhc
Q 044796          162 FGMSTDNFKAV  172 (186)
Q Consensus       162 ~~~A~~~~~~~  172 (186)
                      .+.|....+..
T Consensus       219 ~~~a~~~~~~~  229 (234)
T TIGR02521       219 VAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHH
Confidence            88887776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=7.1e-17  Score=129.88  Aligned_cols=156  Identities=13%  Similarity=0.064  Sum_probs=135.5

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE   90 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (186)
                      ++......|++++|+..|+++++.+|+ +.++..+|.+. ..+..+.+...+.......|.++.++.++|.++...|+++
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA  660 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            344445569999999999999999997 88899888876 5566666666655555555556699999999999999999


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhh
Q 044796           91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFK  170 (186)
Q Consensus        91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~  170 (186)
                      +|+..++++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+....+.+...     ...++.|.+.++
T Consensus       661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~-----~~~~~~a~~~~~  735 (987)
T PRK09782        661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ-----RFNFRRLHEEVG  735 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH-----HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988888     777888888887


Q ss_pred             hcc
Q 044796          171 AVK  173 (186)
Q Consensus       171 ~~~  173 (186)
                      +..
T Consensus       736 r~~  738 (987)
T PRK09782        736 RRW  738 (987)
T ss_pred             HHh
Confidence            774

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.73  E-value=7.7e-17  Score=126.13  Aligned_cols=95  Identities=19%  Similarity=0.334  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhhhccHHH----HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEE----SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      .++..+|.++...|++++    |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~  326 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            445556666666666654    5666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhhccccccchhhhhcc
Q 044796          150 KLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       150 ~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ++..     .|++++|+..|++++
T Consensus       327 ~l~~-----~G~~~eA~~~l~~al  345 (656)
T PRK15174        327 ALRQ-----VGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHH-----CCCHHHHHHHHHHHH
Confidence            6666     666777777776664

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1e-16  Score=115.68  Aligned_cols=164  Identities=22%  Similarity=0.181  Sum_probs=136.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-hcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-EGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      -..+|-.+|..+...++...|+..|++|++++|.+-.+|+++|..+. .+...-+...+.......|.++.+|..+|.||
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY  442 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY  442 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999998873 34443333333333333334459999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE-------FDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      .+.++.++|+.+|.+++.....+..++..+|.++..+++..+|..+|.+.++       .+|+...+...|+.-...   
T Consensus       443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k---  519 (559)
T KOG1155|consen  443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK---  519 (559)
T ss_pred             HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh---
Confidence            9999999999999999999998999999999999999999999999999998       567777778888887777   


Q ss_pred             Hhhccccccchhhhhcc
Q 044796          157 SILGRFGMSTDNFKAVK  173 (186)
Q Consensus       157 ~~~~~~~~A~~~~~~~~  173 (186)
                        .+++++|..+...+.
T Consensus       520 --~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  520 --MKDFDEASYYATLVL  534 (559)
T ss_pred             --hcchHHHHHHHHHHh
Confidence              788888777655543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.73  E-value=8.1e-16  Score=97.67  Aligned_cols=111  Identities=20%  Similarity=0.247  Sum_probs=94.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+...+.+|..++..|++++|+..+++++..+|.                                 ++.++..+|.++.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------------------------~~~~~~~la~~~~   62 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---------------------------------NSRYWLGLAACCQ   62 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---------------------------------cHHHHHHHHHHHH
Confidence            4567788888888899999999999998888888                                 2378888899999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .+|++++|+..+++++..+|+++..++.+|.++...|++++|+..|+++++++|++........
T Consensus        63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  126 (135)
T TIGR02552        63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE  126 (135)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998877554433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.72  E-value=2.7e-16  Score=126.80  Aligned_cols=166  Identities=20%  Similarity=0.208  Sum_probs=115.0

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcC-------------------------------
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQ-------------------------------   54 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~-------------------------------   54 (186)
                      ..++..|..++..|++++|+..+++++..+|+++.+++.+|.+. ..++                               
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL  102 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555443 2222                               


Q ss_pred             ---chhHHHhhCCCc-chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 044796           55 ---SASEKKEVAPAP-EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM  130 (186)
Q Consensus        55 ---~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (186)
                         .+.+...+.... ...+..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+
T Consensus       103 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  182 (899)
T TIGR02917       103 QGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALI  182 (899)
T ss_pred             CCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHH
Confidence               222222222111 2334455778888888888899999999999999888888888888888888888888888888


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          131 KKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       131 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      +++++.+|.+..++..++.++..     .|++++|+..|++++..+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~a~~~~p  224 (899)
T TIGR02917       183 DEVLTADPGNVDALLLKGDLLLS-----LGNIELALAAYRKAIALRP  224 (899)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCC
Confidence            88888888888888888887777     7888888888887754333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2e-16  Score=112.79  Aligned_cols=135  Identities=35%  Similarity=0.588  Sum_probs=113.0

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +++.|......|+.+++.|+|..|...|++++..-+.....           +.++.....       ...-.++.+++.
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~~~~~-------~~k~~~~lNlA~  265 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQKKAE-------ALKLACHLNLAA  265 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHHHHHH-------HHHHHHhhHHHH
Confidence            56788899999999999999999999999999865541110           001111111       112378899999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      |+.++++|.+|+.+++++|+++|++..++++.|.++..+|+++.|...|+++++++|+|..+...+..+-...
T Consensus       266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998877663

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.72  E-value=1.8e-16  Score=123.37  Aligned_cols=133  Identities=14%  Similarity=0.034  Sum_probs=120.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.++.+|.+....|.+++|...++.++++.|++                                 ..+...++.++.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------------------------~~a~~~~a~~L~  131 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------------------------SEAFILMLRGVK  131 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------------------------HHHHHHHHHHHH
Confidence            47888999999999999999999999999999993                                 378888999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      +.+++++|+..+++++..+|+++.+++.+|.++..+|++++|...|++++..+|+++.++..+|.++..     .|+.++
T Consensus       132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-----~G~~~~  206 (694)
T PRK15179        132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-----RGALWR  206 (694)
T ss_pred             HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----cCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988     899999


Q ss_pred             cchhhhhcccC
Q 044796          165 STDNFKAVKDP  175 (186)
Q Consensus       165 A~~~~~~~~~~  175 (186)
                      |...|+++++.
T Consensus       207 A~~~~~~a~~~  217 (694)
T PRK15179        207 ARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHHh
Confidence            99999888643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=5.1e-17  Score=119.77  Aligned_cols=170  Identities=13%  Similarity=0.116  Sum_probs=139.6

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK   88 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   88 (186)
                      +..|..+++.|+..+|+-+|+.++..+|++.++|..+|... ..+++..+..++.......|.+-.++..+|..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56899999999999999999999999999999999999987 33444444444444444444445899999999988887


Q ss_pred             HHHHHHHHHHHHhc-----------------------------------------Cc--ccHHHHHHHHHHHHHhcCHHH
Q 044796           89 FEESIKECTKALEL-----------------------------------------NP--TYMKALIRRAEAHEKLEHFEE  125 (186)
Q Consensus        89 ~~~A~~~~~~al~~-----------------------------------------~p--~~~~~~~~lg~~~~~~g~~~~  125 (186)
                      -.+|+.++.+=+..                                         .|  .++++...||.+|...|+|+.
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            77777777765443                                         33  367888999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCcccccc
Q 044796          126 AIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF  184 (186)
Q Consensus       126 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  184 (186)
                      |+++|+.||..+|+|...|..||-.+..     -.+..+|+..|.+++...|+.....|
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN-----~~~s~EAIsAY~rALqLqP~yVR~Ry  502 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLAN-----GNRSEEAISAYNRALQLQPGYVRVRY  502 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcC-----CcccHHHHHHHHHHHhcCCCeeeeeh
Confidence            9999999999999999999999998888     88999999999999877666555444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.72  E-value=2.1e-16  Score=109.51  Aligned_cols=164  Identities=18%  Similarity=0.151  Sum_probs=131.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh---hhhhccchhh-hhcCchhHHHhh----CCCcchhHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE---RAESASAPEA-KEGQSASEKKEV----APAPEMAELRSIC   75 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~   75 (186)
                      ..++.++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++ ..++.+.+...+    ...|... ....+
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-DADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-chHHH
Confidence            3577899999999999999999999999999999876   4667777766 445555554443    3333222 12247


Q ss_pred             HHHHHHHHhhh--------ccHHHHHHHHHHHHhcCcccHHHH-----------------HHHHHHHHHhcCHHHHHHHH
Q 044796           76 HSNRGICFLKL--------GKFEESIKECTKALELNPTYMKAL-----------------IRRAEAHEKLEHFEEAIADM  130 (186)
Q Consensus        76 ~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~  130 (186)
                      ++.+|.++...        |++++|+..+++++..+|++..++                 ..+|.++...|++.+|+..+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            88889988876        889999999999999999876442                 36788899999999999999


Q ss_pred             HHHHhcCCCC---hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          131 KKILEFDPSN---NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       131 ~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ++++...|++   +.++..++.++..     .|++++|+.+++...
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~-----lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLK-----LGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence            9999997765   5789999988888     999999999887763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.71  E-value=2e-16  Score=127.51  Aligned_cols=166  Identities=17%  Similarity=0.163  Sum_probs=124.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+..|++++...|++ ..+..++... ..++...+...+.......|.+..++..+|.++
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  780 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY  780 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45667778888888888888888888888888877 4444455444 445555554443333333334457888888888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..|+++++.+|+++.++..+|.++...|+ .+|+..+++++.+.|+++..+..++.++..     .|+++
T Consensus       781 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~  854 (899)
T TIGR02917       781 LAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-----KGEAD  854 (899)
T ss_pred             HHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----cCCHH
Confidence            888888888888888888888888888888888888888 778888888888888888888888877777     78888


Q ss_pred             ccchhhhhcccCCC
Q 044796          164 MSTDNFKAVKDPNT  177 (186)
Q Consensus       164 ~A~~~~~~~~~~~~  177 (186)
                      +|+..|++++..++
T Consensus       855 ~A~~~~~~a~~~~~  868 (899)
T TIGR02917       855 RALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHHHhhCC
Confidence            88888888764433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.71  E-value=4.9e-16  Score=128.57  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=129.8

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchh---------HHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMA---------ELRSICH   76 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~   76 (186)
                      +..+..+|.++...|++++|+.+|+++++.+|++..++..++.++.....+.+...+...+...         ......+
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~  464 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL  464 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence            4567778888888888888888888888888888887777776664444444444433222211         1113456


Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      ..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++.+++.++..+..   
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~---  541 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG---  541 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---
Confidence            67899999999999999999999999999999999999999999999999999999999999999999998877777   


Q ss_pred             Hhhccccccchhhhhc
Q 044796          157 SILGRFGMSTDNFKAV  172 (186)
Q Consensus       157 ~~~~~~~~A~~~~~~~  172 (186)
                        .++.++|+..++.+
T Consensus       542 --~~~~~~Al~~l~~l  555 (1157)
T PRK11447        542 --SDRDRAALAHLNTL  555 (1157)
T ss_pred             --CCCHHHHHHHHHhC
Confidence              78888888887765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=2.1e-16  Score=112.27  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=94.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..+...|.++.+.|++++|+.+|+++++.+|+                                 ++.+...++.++..
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---------------------------------~~~~~~~l~~~li~  192 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPD---------------------------------DPDARNALAWLLID  192 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------------------------------HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------------CHHHHHHHHHHHHH
Confidence            455666677777777777777777777777776                                 44778888999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS  165 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A  165 (186)
                      .|+++++...++......|+++..+..+|.++..+|++++|+.+|++++..+|+|+.+...++.++..     .|++++|
T Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~-----~g~~~~A  267 (280)
T PF13429_consen  193 MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ-----AGRKDEA  267 (280)
T ss_dssp             TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred             CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc-----ccccccc
Confidence            99999999999998888899999999999999999999999999999999999999999999999999     9999999


Q ss_pred             chhhhhcc
Q 044796          166 TDNFKAVK  173 (186)
Q Consensus       166 ~~~~~~~~  173 (186)
                      ...+.++.
T Consensus       268 ~~~~~~~~  275 (280)
T PF13429_consen  268 LRLRRQAL  275 (280)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            99887764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.70  E-value=4.4e-16  Score=128.81  Aligned_cols=164  Identities=10%  Similarity=0.029  Sum_probs=123.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-hcCchhHHHhhCCCcc-----------------
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-EGQSASEKKEVAPAPE-----------------   67 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------   67 (186)
                      +..++.+|.++...|++++|+..|+++++.+|.++.+++.++.... .++...+...+...+.                 
T Consensus       495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~  574 (1157)
T PRK11447        495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD  574 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence            3455666777777777777777777777777776666655543321 1111111111111100                 


Q ss_pred             -----------------------hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH
Q 044796           68 -----------------------MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE  124 (186)
Q Consensus        68 -----------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  124 (186)
                                             ..|.++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus       575 ~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~  654 (1157)
T PRK11447        575 QVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA  654 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence                                   012234677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796          125 EAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       125 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      +|+..+++++...|+++.++..++.++..     .|++++|+..|++++.
T Consensus       655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~-----~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        655 AARAQLAKLPATANDSLNTQRRVALAWAA-----LGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHHHHhccCCCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHhh
Confidence            99999999999999999999999988888     8999999999998853

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=2.7e-16  Score=108.02  Aligned_cols=152  Identities=20%  Similarity=0.253  Sum_probs=115.9

Q ss_pred             cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 044796           21 KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKAL  100 (186)
Q Consensus        21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  100 (186)
                      -.+.|+.|++.++...++..+................ ...-...+......+.-+-.-|.-+++.++|++|+..|.+||
T Consensus        30 sleva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI  108 (304)
T KOG0553|consen   30 SLEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAER-HPVEILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAI  108 (304)
T ss_pred             HHHHhHHHHHHHhCcchhhccccccccHHHHHHHhcc-CcccccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4567888899888888876554433221110000000 000001111122345667788999999999999999999999


Q ss_pred             hcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          101 ELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       101 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      +++|+++..|.+++.+|.++|.++.|++..+.++.+||....+|..||.++..     +|++++|++.|+++++.+|.
T Consensus       109 ~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-----~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  109 ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-----LGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-----cCcHHHHHHHHHhhhccCCC
Confidence            99999999999999999999999999999999999999999999999988888     99999999999999644433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.70  E-value=3.2e-16  Score=99.55  Aligned_cols=99  Identities=15%  Similarity=0.152  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .....+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..+..+|.++..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhccccccchhhhhcccCCC
Q 044796          154 MGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                           .|+++.|+..|++++...+
T Consensus        98 -----~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        98 -----LGEPESALKALDLAIEICG  116 (135)
T ss_pred             -----cCCHHHHHHHHHHHHHhcc
Confidence                 9999999999998864433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=7.7e-16  Score=112.81  Aligned_cols=117  Identities=32%  Similarity=0.621  Sum_probs=111.0

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.++..+..|+.+++.|+|..|+.+|.++|..+|+                                 ++..|.++|.||
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~---------------------------------Da~lYsNRAac~  402 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE---------------------------------DARLYSNRAACY  402 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc---------------------------------hhHHHHHHHHHH
Confidence            34667788899999999999999999999999999                                 448999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .+++++..|+..++++++++|++..+|.+.|.++..+.+|+.|++.|.++++++|++.++...+.+|...
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.70  E-value=4.3e-16  Score=115.47  Aligned_cols=162  Identities=13%  Similarity=0.088  Sum_probs=111.9

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhh----CCCcchhH-HHHHHHHHHH
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEV----APAPEMAE-LRSICHSNRG   80 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~a   80 (186)
                      ..+..+|.++...|++++|+..|.++++.+|.+..++..++.+. ..++.+.+...+    ...+.... .....+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45677788888888888888888888888887777777776655 334443333322    22221111 1234556777


Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhh
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN-NQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~  159 (186)
                      .++...|++++|+..++++++.+|+...+++.+|.++...|++++|+..|++++..+|.+ ..++..++.++..     .
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-----~  262 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-----L  262 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-----c
Confidence            777788888888888888888888877788888888888888888888888888777765 3455666666666     6


Q ss_pred             ccccccchhhhhcc
Q 044796          160 GRFGMSTDNFKAVK  173 (186)
Q Consensus       160 ~~~~~A~~~~~~~~  173 (186)
                      |++++|+..+++++
T Consensus       263 g~~~~A~~~l~~~~  276 (389)
T PRK11788        263 GDEAEGLEFLRRAL  276 (389)
T ss_pred             CCHHHHHHHHHHHH
Confidence            67777777776654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.69  E-value=7.6e-16  Score=110.00  Aligned_cols=101  Identities=24%  Similarity=0.298  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhcccCCC
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      ..     .|++++|+..|++++..+|
T Consensus       143 ~~-----~g~~~eA~~~~~~al~~~P  163 (296)
T PRK11189        143 YY-----GGRYELAQDDLLAFYQDDP  163 (296)
T ss_pred             HH-----CCCHHHHHHHHHHHHHhCC
Confidence            88     9999999999999864433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.5e-16  Score=115.60  Aligned_cols=160  Identities=19%  Similarity=0.216  Sum_probs=123.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   79 (186)
                      .++.++.+|...+-.+++++|+.-|++++.++|.+.-++..++... .........    .+....|..    +.++...
T Consensus       393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~----~Evy~~f  468 (606)
T KOG0547|consen  393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC----PEVYNLF  468 (606)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----chHHHHH
Confidence            4567888888888888888888888888888888888888877665 333333332    333344433    3888888


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           80 GICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHE-KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      |.++..+++|++|+..|++++++.|.      ++..+.+.|.+.. =.+++..|+..+++|+++||.+..++..+|.+..
T Consensus       469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l  548 (606)
T KOG0547|consen  469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFEL  548 (606)
T ss_pred             HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            88998999999999999999998888      5556666555432 3478888999999999999999999999998888


Q ss_pred             HHHHHhhccccccchhhhhcc
Q 044796          153 EMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +     +|+.++|++.|+++.
T Consensus       549 Q-----~~~i~eAielFEksa  564 (606)
T KOG0547|consen  549 Q-----RGKIDEAIELFEKSA  564 (606)
T ss_pred             H-----HhhHHHHHHHHHHHH
Confidence            8     888999999998764

>PLN02789 farnesyltranstransferase

Probab=99.67  E-value=1.3e-15  Score=109.04  Aligned_cols=161  Identities=16%  Similarity=0.043  Sum_probs=128.1

Q ss_pred             HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC--chhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH--H
Q 044796           15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ--SASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF--E   90 (186)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~   90 (186)
                      ++...+.+++|+..+.++|.++|++..+|..++.+.....  ..++...+.......|.+..+|..++.+....|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            4556789999999999999999999999999988774432  23444443333333334458999999999888874  7


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc----cccc
Q 044796           91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF----GMST  166 (186)
Q Consensus        91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~----~~A~  166 (186)
                      +++.+++++++.+|.+..+|..+|.++..+|++++|+.++.++++.+|.+..+|...+.++..++.  .+.+    ++.+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~--l~~~~~~~e~el  203 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL--LGGLEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc--cccccccHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999988877533  2323    3556


Q ss_pred             hhhhhcc--cCCC
Q 044796          167 DNFKAVK--DPNT  177 (186)
Q Consensus       167 ~~~~~~~--~~~~  177 (186)
                      .+..+++  +|++
T Consensus       204 ~y~~~aI~~~P~N  216 (320)
T PLN02789        204 KYTIDAILANPRN  216 (320)
T ss_pred             HHHHHHHHhCCCC
Confidence            6666665  5543

>PLN02789 farnesyltranstransferase

Probab=99.67  E-value=1.7e-15  Score=108.49  Aligned_cols=167  Identities=15%  Similarity=0.046  Sum_probs=133.1

Q ss_pred             hHHHHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCc--hh----HHHhhCCCcchhHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEAKE-GQS--AS----EKKEVAPAPEMAELRSIC   75 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~--~~----~~~~~~~~~~~~~~~~~~   75 (186)
                      +...+|..+|.++...| ++++++..+.+++..+|++..+|..++.+... +..  ..    ..+++...+.+    ..+
T Consensus        69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN----y~A  144 (320)
T PLN02789         69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN----YHA  144 (320)
T ss_pred             hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc----HHH
Confidence            35678899999999988 68999999999999999999999988866532 221  22    22444455544    499


Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL---EHF----EEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      |..++.+....|++++|+.+++++++.+|.+..+|+.+|.++...   |.+    ++++.+..+++..+|+|..+|..++
T Consensus       145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~  224 (320)
T PLN02789        145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR  224 (320)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence            999999999999999999999999999999999999999998876   333    5788899999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .++...+.. ++...+|++.+..+++.
T Consensus       225 ~ll~~~~~~-l~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        225 GLFKDDKEA-LVSDPEVSSVCLEVLSK  250 (320)
T ss_pred             HHHhcCCcc-cccchhHHHHHHHhhcc
Confidence            888763322 24455577766665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.67  E-value=4.5e-15  Score=99.82  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=98.5

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH-hhhcc--HHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF-LKLGK--FEESIK   94 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~--~~~A~~   94 (186)
                      .++.++++..+++++..+|++.+.|..+|.++ ..++.+.+..++.......|.++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            55666677777777777777777777776655 445555555444444444444569999999975 67777  599999


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .++++++.+|+++.++..+|.++...|++++|+..|+++++++|.+..-..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            999999999999999999999999999999999999999999998765443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.67  E-value=1e-15  Score=96.91  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      -...+.+|..+...|++++|...|+.+..++|.++..|+++|.|+..+|++++|+..|.+++.++|+++.+..+.|.|+.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            37788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccchhhhhcccC
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .     .|+.+.|++.|+.+++.
T Consensus       115 ~-----lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 A-----CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             H-----cCCHHHHHHHHHHHHHH
Confidence            9     99999999999988643

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=4.1e-16  Score=108.54  Aligned_cols=171  Identities=13%  Similarity=0.071  Sum_probs=143.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..+...+.++...+++++|.++|+.+++.+|.+.++..-.+.-+ ..++.+-+........+..-.++..++++|.|++
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            455677888899999999999999999999999999888777665 4555566666555555555556799999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           85 KLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ..++++-++.+|++++..-.   .-.++|+++|.+....||+.-|.++|+-++..+|++.+++.+|+..-..     .|+
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r-----~G~  444 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR-----SGD  444 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh-----cCc
Confidence            99999999999999997633   3478999999999999999999999999999999999999999987777     899


Q ss_pred             ccccchhhhhcccCCCCccc
Q 044796          162 FGMSTDNFKAVKDPNTGAYS  181 (186)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~  181 (186)
                      .+.|...+..+.+..|.-+.
T Consensus       445 i~~Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  445 ILGARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             hHHHHHHHHHhhhhCccccc
Confidence            99999999988655544333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.66  E-value=6.8e-15  Score=109.12  Aligned_cols=163  Identities=12%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHh----hCCCcchhHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKE----VAPAPEMAELRSICHSNRG   80 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a   80 (186)
                      ....+..|..+...|++++|+..|.++++.+|++..++..++... ..++...+...    +............++..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            345566788888888899999999999998888888888877665 44444333332    2211111112335566777


Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-----HHHHHHHHHHHHH
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ-----AKRTILRKLKEMG  155 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~  155 (186)
                      .++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+.++++..|.+..     .+..++.++..  
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--  192 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA--  192 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh--
Confidence            77777777777777777777766666666666666666666666666666666665554322     22233333333  


Q ss_pred             HHhhccccccchhhhhcc
Q 044796          156 NSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~  173 (186)
                         .+++++|+..|++++
T Consensus       193 ---~~~~~~A~~~~~~al  207 (389)
T PRK11788        193 ---RGDLDAARALLKKAL  207 (389)
T ss_pred             ---CCCHHHHHHHHHHHH
Confidence               555555555555553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.65  E-value=7.1e-15  Score=107.78  Aligned_cols=165  Identities=18%  Similarity=0.088  Sum_probs=132.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-----hhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-----KEGQSASEKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      ..+.....|..++..|++++|...++++++.+|++..++.. +...     ..+........+.......+........+
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            45567778999999999999999999999999999876653 2111     22333444444433333444455777889


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHH
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ----AKRTILRKLKEMG  155 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~  155 (186)
                      |.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.    .+..++.++..  
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~--  198 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE--  198 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999875433    35567877777  


Q ss_pred             HHhhccccccchhhhhcccC
Q 044796          156 NSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~  175 (186)
                         .|++++|+..|++++.+
T Consensus       199 ---~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         199 ---RGDYEAALAIYDTHIAP  215 (355)
T ss_pred             ---CCCHHHHHHHHHHHhcc
Confidence               99999999999987644

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.6e-15  Score=108.36  Aligned_cols=161  Identities=22%  Similarity=0.268  Sum_probs=126.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..+-.+|..+...++++.|+.+|.+++...-. ++...      .....+...+.........|..+..-...|..+++
T Consensus       298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls------~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk  370 (539)
T KOG0548|consen  298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLS------KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK  370 (539)
T ss_pred             HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHH------HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence            344555888999999999999999998875444 11111      11111222222222222223334566677999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS  165 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A  165 (186)
                      .|+|..|+..|.+++..+|+++..|.++|.||..+|.+..|+...+.+++++|+...++..-|.++..     +.+|+.|
T Consensus       371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-----mk~ydkA  445 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-----MKEYDKA  445 (539)
T ss_pred             ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988888     9999999


Q ss_pred             chhhhhcccCCCC
Q 044796          166 TDNFKAVKDPNTG  178 (186)
Q Consensus       166 ~~~~~~~~~~~~~  178 (186)
                      .+.|..++..+|.
T Consensus       446 leay~eale~dp~  458 (539)
T KOG0548|consen  446 LEAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHhcCch
Confidence            9999998755443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.63  E-value=3.7e-14  Score=87.87  Aligned_cols=110  Identities=17%  Similarity=0.243  Sum_probs=98.5

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ++.++..|..+...|++++|+..|.+++..+|+++                          .    .+.+++.+|.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------~----~~~~~~~l~~~~~~   51 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--------------------------Y----APNAHYWLGEAYYA   51 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--------------------------c----cHHHHHHHHHHHHh
Confidence            46789999999999999999999999999998832                          1    12678899999999


Q ss_pred             hccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           86 LGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .|++++|+..+++++..+|++   +.+++.+|.++...|++++|+..+.+++...|++..+..
T Consensus        52 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        52 QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999998875   678999999999999999999999999999999876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=2.8e-16  Score=111.66  Aligned_cols=169  Identities=18%  Similarity=0.212  Sum_probs=88.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh---------------------------------hh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA---------------------------------KE   52 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---------------------------------~~   52 (186)
                      .+.|..+|......++++.|+..|++++..++..+..+..++.+.                                 ..
T Consensus        44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~  123 (280)
T PF13429_consen   44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL  123 (280)
T ss_dssp             --------------------------------------------------------------------------H-HHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence            445556677777777777777777777777666555544443221                                 11


Q ss_pred             cCchhHHHhhCCCcc--hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 044796           53 GQSASEKKEVAPAPE--MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM  130 (186)
Q Consensus        53 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (186)
                      ++.......+.....  ..+.++..|..+|.++.+.|+.++|+..++++++.+|+++.+...++.++...|+++++...+
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l  203 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL  203 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            112222222221111  113456788899999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796          131 KKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       131 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                      .......|+++..+..+|.++..     +|++++|..+|+++...+|++
T Consensus       204 ~~~~~~~~~~~~~~~~la~~~~~-----lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  204 KRLLKAAPDDPDLWDALAAAYLQ-----LGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHH-HTSCCHCHHHHHHHHH-----HT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHCcCHHHHHHHHHHHhcc-----ccccccccccccccccccccc
Confidence            88888888888899999988888     899999999999886433333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.62  E-value=4e-14  Score=95.73  Aligned_cols=129  Identities=17%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      +.+...|...+..|+|..|+..++++..+.|+                                 ++.+|..+|.+|.+.
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---------------------------------d~~~~~~lgaaldq~  147 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---------------------------------DWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---------------------------------ChhhhhHHHHHHHHc
Confidence            34445788888888888888888888888888                                 448999999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      |++++|...|.+++++.|.++.+..++|+.+.-.|+++.|...+..+...-+.+..+..+++.+...     .|++++|.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~-----~g~~~~A~  222 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL-----QGDFREAE  222 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-----cCChHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999977777     88888888


Q ss_pred             hhhhhcc
Q 044796          167 DNFKAVK  173 (186)
Q Consensus       167 ~~~~~~~  173 (186)
                      ..-.+.+
T Consensus       223 ~i~~~e~  229 (257)
T COG5010         223 DIAVQEL  229 (257)
T ss_pred             hhccccc
Confidence            7765543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.62  E-value=4.6e-15  Score=83.12  Aligned_cols=66  Identities=36%  Similarity=0.539  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIADMKKILEFDP  138 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p  138 (186)
                      +..|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4789999999999999999999999999999999999999999999999 79999999999999998

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.9e-15  Score=107.96  Aligned_cols=165  Identities=23%  Similarity=0.255  Sum_probs=125.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCc---------------------------
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-GQS---------------------------   55 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~---------------------------   55 (186)
                      ..+-.|+..|.-|+-.|++.+|.++|.++..++|....+|.+.|..+.. +.-                           
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme  389 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME  389 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            3456788889888888999999999999999999999999888865522 111                           


Q ss_pred             -------hhHH----HhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHH
Q 044796           56 -------ASEK----KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAH  117 (186)
Q Consensus        56 -------~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~  117 (186)
                             +.+.    .++...|    .++-....+|.+.+..+.|.+|+.+|+.++..       .+.....+.++|.++
T Consensus       390 y~~t~n~kLAe~Ff~~A~ai~P----~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  390 YMRTNNLKLAEKFFKQALAIAP----SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHhccHHHHHHHHHHHHhcCC----CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence                   1111    2233333    33466777888888888888888888887732       122445688899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc--cCCC
Q 044796          118 EKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK--DPNT  177 (186)
Q Consensus       118 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~  177 (186)
                      .+++.+++|+..|++++.+.|.++.++..+|.++..     +|.++.|+++|.+++  +|++
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-----lgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-----LGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-----hcChHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999977777     899999999998884  5543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.61  E-value=2.4e-14  Score=114.26  Aligned_cols=162  Identities=9%  Similarity=-0.100  Sum_probs=126.9

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCCh----hhhhccchhh-hhcCchhHHHhhCCCcchhH---------------H
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPE----RAESASAPEA-KEGQSASEKKEVAPAPEMAE---------------L   71 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~   71 (186)
                      +|..++..|++++|+.+|++++..+|.+.    .....++... ..+..+.+...+.......|               .
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            58889999999999999999998887762    2233333222 33444444433221111111               1


Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|++..++..++.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            23577889999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHhhccccccchhhhhcccCCCC
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      ..     .+++++|+..++.++...|+
T Consensus       438 l~-----~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        438 LD-----LQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             HH-----hCCHHHHHHHHHHHHHhCCC
Confidence            77     89999999999888643333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=2e-15  Score=111.26  Aligned_cols=139  Identities=13%  Similarity=0.050  Sum_probs=91.8

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK   88 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   88 (186)
                      +.+| +++..|+..+-...-.+.++..|+.+-.|+..|..+ -.+....+.+.+......++.-+.+|...|..+...|.
T Consensus       283 ~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~E  361 (611)
T KOG1173|consen  283 LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGE  361 (611)
T ss_pred             HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcch
Confidence            4456 888889888888888899999999999999999887 44677777777666555555555777777777776666


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      .++|+.+|..|-+.-|......+-+|.-|...++++-|...|.+|+.+.|.+|-+...+|.
T Consensus       362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgv  422 (611)
T KOG1173|consen  362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGV  422 (611)
T ss_pred             HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhh
Confidence            6666666666555555544444444555555555555555555555555544444444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.60  E-value=1.3e-13  Score=91.13  Aligned_cols=107  Identities=33%  Similarity=0.419  Sum_probs=91.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|..+...|++++|+.+|+++++..|+.                          +.    .+.++..+|.++
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~----~~~~~~~la~~~   82 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--------------------------ND----RSYILYNMGIIY   82 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------------------------ch----HHHHHHHHHHHH
Confidence            457788999999999999999999999999887762                          11    136888999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCCC
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH--------------FEEAIADMKKILEFDPSN  140 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~  140 (186)
                      ...|++++|+..+++++...|+++.++..+|.++...|+              +++|+..+++++..+|++
T Consensus        83 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         83 ASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999999999999999998887              577888888888888876

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.60  E-value=1.5e-14  Score=96.12  Aligned_cols=95  Identities=19%  Similarity=0.168  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTILRKL  151 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  151 (186)
                      .+|..+|.+|...|+.+.|.+.|++|+.++|++.+++.+.|..++.+|++++|...|++|+..  -|.-..++.++|.|-
T Consensus        70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca  149 (250)
T COG3063          70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA  149 (250)
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence            555555555555555555555555555555555555555555555555555555555555531  122234445555444


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .|+++.|..+|++++
T Consensus       150 l~-----~gq~~~A~~~l~raL  166 (250)
T COG3063         150 LK-----AGQFDQAEEYLKRAL  166 (250)
T ss_pred             hh-----cCCchhHHHHHHHHH
Confidence            44     555555555555553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.58  E-value=1.2e-13  Score=110.37  Aligned_cols=156  Identities=12%  Similarity=0.078  Sum_probs=121.1

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE   90 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (186)
                      ...+..-.|++++|+..|.++...+|....++..++... ..++...+...+.......|.++.++..+|.++...|+++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            334455667777777777777776677666666666555 3444444444333322233334578889999999999999


Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhh
Q 044796           91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFK  170 (186)
Q Consensus        91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~  170 (186)
                      +|+..+++++..+|+++. +..+|.++...|++++|+..++++++++|+++.++..++.++..     .+..+.|+..++
T Consensus       101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-----~~~~e~Al~~l~  174 (765)
T PRK10049        101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN-----NRLSAPALGAID  174 (765)
T ss_pred             HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCChHHHHHHHH
Confidence            999999999999999999 99999999999999999999999999999999999999988877     777777777776


Q ss_pred             hcc
Q 044796          171 AVK  173 (186)
Q Consensus       171 ~~~  173 (186)
                      ++.
T Consensus       175 ~~~  177 (765)
T PRK10049        175 DAN  177 (765)
T ss_pred             hCC
Confidence            553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.57  E-value=4.8e-13  Score=88.05  Aligned_cols=108  Identities=29%  Similarity=0.288  Sum_probs=78.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|.++...|++++|+..|++++.+.|+.                          .    ..+.++.++|.++
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--------------------------~----~~~~~~~~lg~~~   82 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--------------------------Y----DRSYILYNIGLIH   82 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------------------h----hhHHHHHHHHHHH
Confidence            456777888888888888888888888888776651                          1    0225778888888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-------HhcCHH-------HHHHHHHHHHhcCCCCh
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHE-------KLEHFE-------EAIADMKKILEFDPSNN  141 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  141 (186)
                      ...|++++|+..+++++.++|.....+..+|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus        83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            88888888888888888888888877777777777       666655       55556666666776543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.56  E-value=1e-13  Score=110.00  Aligned_cols=168  Identities=8%  Similarity=-0.028  Sum_probs=127.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+...+..+.+.++.|+++.|+..|+++++.+|.++.....+..+. ..+....+...++......+........+|.+
T Consensus        32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            35677889999999999999999999999999999853333333333 44666565555444332222334555566889


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +..+|++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++..     .++.
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-----~~~~  185 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-----TDRN  185 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-----cchH
Confidence            9999999999999999999999999999999999999999999999999999999985554 333333333     4555


Q ss_pred             cccchhhhhcccCCC
Q 044796          163 GMSTDNFKAVKDPNT  177 (186)
Q Consensus       163 ~~A~~~~~~~~~~~~  177 (186)
                      .+|++.++++++.+|
T Consensus       186 ~~AL~~~ekll~~~P  200 (822)
T PRK14574        186 YDALQASSEAVRLAP  200 (822)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            559999998864433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.56  E-value=1.9e-13  Score=80.76  Aligned_cols=99  Identities=37%  Similarity=0.504  Sum_probs=82.8

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .++.+|..++..|++++|+..++++++..|.+                                 ..++..+|.++...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~   48 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------------------------ADAYYNLAAAYYKLG   48 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------------------------HHHHHHHHHHHHHHH
Confidence            46778888888888888888888888888872                                 256778888888888


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      ++++|+..+++++...|.++.++..+|.++...|+++.|...+.++++.+|.
T Consensus        49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            8888888888888888888888888888888888888888888888887763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=1.8e-13  Score=92.56  Aligned_cols=152  Identities=17%  Similarity=0.134  Sum_probs=120.4

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT   97 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   97 (186)
                      ..+...+...+-+....+|.+..+ ..+.... ..++.+.....+.......+.+......+|......|+|.+|+..+.
T Consensus        46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~r  124 (257)
T COG5010          46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR  124 (257)
T ss_pred             HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            334455777777788889998888 6555544 33444444443333333333344566669999999999999999999


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc-ccCC
Q 044796           98 KALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV-KDPN  176 (186)
Q Consensus        98 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~  176 (186)
                      ++...+|++.++|..+|.+|.+.|++++|...|.+++++.|.++.+..+++..+.-     .|+++.|...+..+ .+|.
T Consensus       125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-----~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-----RGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-----cCCHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999966666     99999999998776 3443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.55  E-value=5.4e-14  Score=77.79  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=60.5

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      +.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999975

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.55  E-value=3.3e-13  Score=104.34  Aligned_cols=168  Identities=14%  Similarity=0.131  Sum_probs=129.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ...++..|+.++..|++++|...+.++|+.+|.++.++.-+|.++ ..|+.+......-......|.+...|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            677888999999999999999999999999999999999999988 4456655554433333333334489999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHHHHHHhh
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK-----RTILRKLKEMGNSIL  159 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~~~~~~~~  159 (186)
                      ++|++.+|+-+|.+|++.+|.+.+..+..+.++.++|+...|.+.|.+.+.+.|....-+     ...+..+..     .
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-----~  293 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-----H  293 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-----h
Confidence            999999999999999999999999999999999999999999999999999998322111     111222222     5


Q ss_pred             ccccccchhhhhcccCCCC
Q 044796          160 GRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~  178 (186)
                      ++-+.|++.++.+++...+
T Consensus       294 ~~~e~a~~~le~~~s~~~~  312 (895)
T KOG2076|consen  294 NERERAAKALEGALSKEKD  312 (895)
T ss_pred             hHHHHHHHHHHHHHhhccc
Confidence            5557888887777664333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.54  E-value=7.4e-14  Score=78.17  Aligned_cols=67  Identities=34%  Similarity=0.574  Sum_probs=63.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..|..+|.+++..|++++|+.+|+++++++|+                                 ++.+++++|.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---------------------------------~~~~~~~~g~~~~   48 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---------------------------------NAEAYYNLGLAYM   48 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------------CHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999                                 4589999999999


Q ss_pred             hhc-cHHHHHHHHHHHHhcCc
Q 044796           85 KLG-KFEESIKECTKALELNP  104 (186)
Q Consensus        85 ~~~-~~~~A~~~~~~al~~~p  104 (186)
                      .+| ++++|+..++++++++|
T Consensus        49 ~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   49 KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HTTTHHHHHHHHHHHHHHHST
T ss_pred             HhCccHHHHHHHHHHHHHcCc
Confidence            999 89999999999999988

...

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=3.9e-13  Score=90.61  Aligned_cols=149  Identities=21%  Similarity=0.145  Sum_probs=114.2

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhc-cchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESA-SAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      .....|..+-..|.+++|+++|+..++-+|.+..++-. ++.+...+....+.+.+.......+.+..+|..++.+|...
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            34456777888899999999999999999887766654 33344556665665555444444444558999999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      |+|++|.-|+++.+-+.|.++..+.++|.+++.+|   ++.-|..+|.++++++|.+..+++.+..+-..+..
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888998888777   45668889999999999888888887766665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.54  E-value=7.6e-14  Score=101.98  Aligned_cols=98  Identities=23%  Similarity=0.295  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      +...|...+..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..+|.++..  
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~--   82 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK--   82 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence            566789999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             HHhhccccccchhhhhcccCCCC
Q 044796          156 NSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                         +|++++|+..|++++..+++
T Consensus        83 ---lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         83 ---LEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             ---hCCHHHHHHHHHHHHHhCCC
Confidence               99999999999998644443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.53  E-value=2.8e-13  Score=103.26  Aligned_cols=130  Identities=22%  Similarity=0.204  Sum_probs=120.1

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ..|...|..+...+..++|..|+.++-.++|-                                 ....|+..|.++...
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---------------------------------~~~~~~~~G~~~~~~  697 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPL---------------------------------SASVYYLRGLLLEVK  697 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------------------------------hHHHHHHhhHHHHHH
Confidence            45667788888888899999999999888887                                 448999999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA--DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      |++.+|.+.|..++.++|+++....-+|.++...|+..-|..  .+..+++++|.++++|+.+|.++..     +|+.+.
T Consensus       698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-----~Gd~~~  772 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-----LGDSKQ  772 (799)
T ss_pred             HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----ccchHH
Confidence            999999999999999999999999999999999999988888  9999999999999999999999999     999999


Q ss_pred             cchhhhhccc
Q 044796          165 STDNFKAVKD  174 (186)
Q Consensus       165 A~~~~~~~~~  174 (186)
                      |.++|..++.
T Consensus       773 Aaecf~aa~q  782 (799)
T KOG4162|consen  773 AAECFQAALQ  782 (799)
T ss_pred             HHHHHHHHHh
Confidence            9999998853

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.53  E-value=4.4e-13  Score=97.77  Aligned_cols=136  Identities=21%  Similarity=0.216  Sum_probs=123.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ....++..+...+..|++++|...+...+...|+                                 ++..+...+.++.
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---------------------------------N~~~~~~~~~i~~  351 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD---------------------------------NPYYLELAGDILL  351 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999                                 3378888999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-------
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS-------  157 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------  157 (186)
                      ..++..+|++.+++++..+|+.+..+.++|.++...|++.+|+..+++.+..+|+++..|..|++++..+|+.       
T Consensus       352 ~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~  431 (484)
T COG4783         352 EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR  431 (484)
T ss_pred             HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988865       


Q ss_pred             -----hhccccccchhhhhcc
Q 044796          158 -----ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       158 -----~~~~~~~A~~~~~~~~  173 (186)
                           ..|+++.|+..+..+.
T Consensus       432 AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         432 AEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence                 4778888888887764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=5.6e-13  Score=89.86  Aligned_cols=165  Identities=15%  Similarity=0.042  Sum_probs=137.1

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      +........|+.+.|..|+++.-...|....+...-|..+ ..+..+++...+....+.+|.+..++-..-.+...+|+-
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~  136 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN  136 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence            3455667889999999999999999999888777777666 344555555555444444455556776666777788999


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796           90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF  169 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~  169 (186)
                      -+||+.+...++..+.++++|..++.+|...|+|++|.-++++++-+.|.++-.+..++.++..+|.  ...+..|.++|
T Consensus       137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg--~eN~~~arkyy  214 (289)
T KOG3060|consen  137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG--AENLELARKYY  214 (289)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999887  66778889999


Q ss_pred             hhcccCCC
Q 044796          170 KAVKDPNT  177 (186)
Q Consensus       170 ~~~~~~~~  177 (186)
                      .++++.++
T Consensus       215 ~~alkl~~  222 (289)
T KOG3060|consen  215 ERALKLNP  222 (289)
T ss_pred             HHHHHhCh
Confidence            99876554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.53  E-value=3.6e-14  Score=110.38  Aligned_cols=170  Identities=18%  Similarity=0.164  Sum_probs=101.8

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCchhH-------HHhhCCCc-----------
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-GQSASE-------KKEVAPAP-----------   66 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~-----------   66 (186)
                      ++....+|.|+++.|+.+.|+..|.++++++|.+..+..++|..... .+.+..       ..++...+           
T Consensus       199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn  278 (1018)
T KOG2002|consen  199 ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLAN  278 (1018)
T ss_pred             CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            34445668888899999999999999999999888888888855422 111111       11111111           


Q ss_pred             ----------------------chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCH
Q 044796           67 ----------------------EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHF  123 (186)
Q Consensus        67 ----------------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~  123 (186)
                                            ...+..+..++++|.++..+|+|++|..+|.++++.+|++ .-+++.+|..+...|++
T Consensus       279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl  358 (1018)
T KOG2002|consen  279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL  358 (1018)
T ss_pred             HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence                                  1112233445666666666666666666666666666665 55566666666666666


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCC
Q 044796          124 EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       124 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      +.|..+|+++++..|++.++...+|.++...+ ......+.|.....+++.+.
T Consensus       359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcc
Confidence            66666666666666666666666665555522 11234455555555554433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=6e-14  Score=100.31  Aligned_cols=144  Identities=28%  Similarity=0.502  Sum_probs=97.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccc------------hhh-hhcC----chhHHHhhCCCcc
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA------------PEA-KEGQ----SASEKKEVAPAPE   67 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~-~~~~----~~~~~~~~~~~~~   67 (186)
                      .+++++..|.+++..++.+.|+.+|++++.++|++..+-...-            ... ..+.    .+.+..++...|.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~  281 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS  281 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence            4677778888888888888888888888888887655432221            111 1111    1444556677777


Q ss_pred             hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      +...++.+|.++|.+....|+..+|+..++.++.++|....++...|.|+..++++++|++.|+++++...+ .+.+..+
T Consensus       282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l  360 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL  360 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence            666667777777777777777777777777777777777777777777777777777777777777776655 4444444


Q ss_pred             HH
Q 044796          148 LR  149 (186)
Q Consensus       148 ~~  149 (186)
                      ..
T Consensus       361 ~~  362 (486)
T KOG0550|consen  361 RE  362 (486)
T ss_pred             HH
Confidence            43

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.53  E-value=1.4e-13  Score=96.73  Aligned_cols=113  Identities=35%  Similarity=0.579  Sum_probs=104.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..+.+.|+.|+++|.|++|+.||.+++..+|.+                                 +..+.++|.+|
T Consensus        95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------------------------pV~~~NRA~AY  141 (536)
T KOG4648|consen   95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------------------------PVYHINRALAY  141 (536)
T ss_pred             HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------------------------ccchhhHHHHH
Confidence            455668899999999999999999999999999983                                 27788999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      ++.+.|..|...|+.|+.++..+..+|.++|.+...+|...+|...++.++.+.|++.+....++.
T Consensus       142 lk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  142 LKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR  207 (536)
T ss_pred             HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998887766654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.51  E-value=5.3e-13  Score=93.87  Aligned_cols=164  Identities=18%  Similarity=0.259  Sum_probs=105.0

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..++.++.+|..++..|++..|+..|..|++.+|++-.+.+..+..+ ..+....+...+....+..|+...+...+|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            45677899999999999999999999999999999988888877665 44444333333332223333334777888888


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccH---HH------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYM---KA------------LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ++++|++++|+..|+.++..+|.+.   ++            +......++..|++..|+.+....+++.|=+...+...
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R  195 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR  195 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence            8888888888888888888877431   11            11112223344555555555555555555555555555


Q ss_pred             HHHHHHHHHHhhccccccchhhhhc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +.|+..     .|+...||..++.+
T Consensus       196 akc~i~-----~~e~k~AI~Dlk~a  215 (504)
T KOG0624|consen  196 AKCYIA-----EGEPKKAIHDLKQA  215 (504)
T ss_pred             HHHHHh-----cCcHHHHHHHHHHH
Confidence            555555     44444444444443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.51  E-value=1.5e-12  Score=83.05  Aligned_cols=108  Identities=7%  Similarity=0.045  Sum_probs=97.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .-+..+..|..++..|++++|...|+-....+|.                                 +++.|..+|.|+.
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---------------------------------n~~Y~~GLaa~~Q   82 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---------------------------------NPDYTMGLAAVCQ   82 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---------------------------------cHHHHHHHHHHHH
Confidence            3467888999999999999999999999999998                                 3378999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT  146 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  146 (186)
                      .+++|++|+..|..+..+++++|.+.+..|.|+..+|+.+.|..+|..++. .|.+......
T Consensus        83 ~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~  143 (165)
T PRK15331         83 LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK  143 (165)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 5776655443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.51  E-value=1.7e-13  Score=79.71  Aligned_cols=84  Identities=33%  Similarity=0.504  Sum_probs=70.0

Q ss_pred             HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796           18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT   97 (186)
Q Consensus        18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   97 (186)
                      ..|+++.|+..|+++++..|.+                          +     +...++.+|.+++..|+|++|+..++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~--------------------------~-----~~~~~~~la~~~~~~~~y~~A~~~~~   49 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTN--------------------------P-----NSAYLYNLAQCYFQQGKYEEAIELLQ   49 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGT--------------------------H-----HHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCC--------------------------h-----hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3688999999999999998862                          1     22577779999999999999999999


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           98 KALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        98 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      + .+.+|.++..++.+|.|+..+|++++|+..|+++
T Consensus        50 ~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   50 K-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             C-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             H-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            9 8888888888888999999999999999998875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=6.6e-14  Score=101.79  Aligned_cols=171  Identities=15%  Similarity=0.066  Sum_probs=140.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +.++.+.|++.+..|++++|.+.|++++.-+....++++..|... ..+..+++...+-..-....-+..+++.++.+|.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            556778889999999999999999999999999999999999877 4555566655543322222334588899999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      .+.+..+|++++-++..+-|++|.++..+|.+|-+.|+..+|.+++-......|-+.++..+|+..+..     ..-.+.
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid-----tqf~ek  644 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID-----TQFSEK  644 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-----hHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888877     677788


Q ss_pred             cchhhhhc--ccCCCCccc
Q 044796          165 STDNFKAV--KDPNTGAYS  181 (186)
Q Consensus       165 A~~~~~~~--~~~~~~~~~  181 (186)
                      |+.+|+++  +.|+-..|+
T Consensus       645 ai~y~ekaaliqp~~~kwq  663 (840)
T KOG2003|consen  645 AINYFEKAALIQPNQSKWQ  663 (840)
T ss_pred             HHHHHHHHHhcCccHHHHH
Confidence            88899877  466544333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=6.2e-13  Score=95.25  Aligned_cols=109  Identities=22%  Similarity=0.309  Sum_probs=80.5

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh----ccchhh-hhcCchhH----HHhhCCCcchhHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES----ASAPEA-KEGQSASE----KKEVAPAPEMAELRS   73 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~   73 (186)
                      .+..+.+...|+..++.|++.+|.++|..+|.++|++.....    +++... ..+...++    ..++...+..    .
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy----i  321 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY----I  321 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH----H
Confidence            356678899999999999999999999999999999765433    333333 33333333    3444444444    4


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  116 (186)
                      .++..+|.|+..+++|++|++.++++++...+ ......+..+
T Consensus       322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A  363 (486)
T KOG0550|consen  322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA  363 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence            89999999999999999999999999998665 4444444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.50  E-value=2.8e-12  Score=82.34  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=112.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+...+......+..+++..+...+++.++.+|+.+                              ....+...+|.++
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------------------------ya~~A~l~lA~~~   58 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------------------------YAALAALQLAKAA   58 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------------------------HHHHHHHHHHHHH
Confidence            4566677777777889999999999999999988832                              1237788899999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796           84 LKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG  160 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  160 (186)
                      ...|++++|+..|+.++...|+.   +.+.+++|.++...|++++|+..+.. +.-.+-.+.++..+|.++..     .|
T Consensus        59 ~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-----~g  132 (145)
T PF09976_consen   59 YEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-----QG  132 (145)
T ss_pred             HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-----CC
Confidence            99999999999999999987654   56888999999999999999999966 34455567788888988888     99


Q ss_pred             cccccchhhhhcc
Q 044796          161 RFGMSTDNFKAVK  173 (186)
Q Consensus       161 ~~~~A~~~~~~~~  173 (186)
                      ++++|+..|++++
T Consensus       133 ~~~~A~~~y~~Al  145 (145)
T PF09976_consen  133 DYDEARAAYQKAL  145 (145)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.49  E-value=5.2e-13  Score=78.82  Aligned_cols=97  Identities=31%  Similarity=0.469  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      +++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+.+++...|.++.++..++.++.. 
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999988888 


Q ss_pred             HHHhhccccccchhhhhcccCC
Q 044796          155 GNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                          .++++.|...+..++...
T Consensus        81 ----~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          81 ----LGKYEEALEAYEKALELD   98 (100)
T ss_pred             ----HHhHHHHHHHHHHHHccC
Confidence                888889999998876543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.49  E-value=5.9e-13  Score=103.79  Aligned_cols=152  Identities=20%  Similarity=0.181  Sum_probs=127.7

Q ss_pred             HHHHHHhHhHHHH------------cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHH
Q 044796            6 ANEAKLEGNKLFA------------EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELR   72 (186)
Q Consensus         6 a~~~~~~g~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   72 (186)
                      +..+..+|+.++.            .+.+++|+.+|.++|+.+|.|..+-.++|.++ ..+....+...+....+.....
T Consensus       600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~  679 (1018)
T KOG2002|consen  600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF  679 (1018)
T ss_pred             hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC
Confidence            4566778887653            45689999999999999999999999999887 4455555555444333333334


Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      +.+|.++|.||..+|+|..|++.|+.+++..  .+++.++..||.+++..|.+.+|...+.+++.+.|.++.+.++++.+
T Consensus       680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV  759 (1018)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence            4899999999999999999999999999863  35688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 044796          151 LKEMGNS  157 (186)
Q Consensus       151 ~~~~~~~  157 (186)
                      +..++..
T Consensus       760 ~kkla~s  766 (1018)
T KOG2002|consen  760 LKKLAES  766 (1018)
T ss_pred             HHHHHHH
Confidence            9998876

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.48  E-value=5.1e-12  Score=88.25  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             HHHHHHhHhHH-HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKL-FAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ....+..|..+ +..|+|++|+..|++.++..|+.                          +    ..+.+++.+|.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--------------------------~----~a~~A~y~LG~~y~  191 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS--------------------------T----YQPNANYWLGQLNY  191 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------------------------c----chHHHHHHHHHHHH
Confidence            35677888876 56799999999999999999993                          2    12378999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           85 KLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      ..|++++|+..|++++...|+   .+.+++.+|.++..+|++++|...|+++++..|++..+..
T Consensus       192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            999999999999999988777   4789999999999999999999999999999999876543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=3e-13  Score=94.51  Aligned_cols=158  Identities=11%  Similarity=0.010  Sum_probs=119.4

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK   88 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   88 (186)
                      .++|.|++..|.+.+|.+.++.+++..|- ++.+..++..+ ..++...+...+....+..|.+.......|.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            36899999999999999999999998776 55566666665 33445555555544444444555888889999999999


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchh
Q 044796           89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDN  168 (186)
Q Consensus        89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~  168 (186)
                      +++|++.|+.+++.+|.+.++...+|.-|+.-++++-|+.+|++.+++.-.+++...++|.|...     .++++.+..+
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-----aqQ~D~~L~s  380 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-----AQQIDLVLPS  380 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-----hcchhhhHHH
Confidence            99999999999999998877777777777777777777777777777777777777777766555     6677777777


Q ss_pred             hhhcc
Q 044796          169 FKAVK  173 (186)
Q Consensus       169 ~~~~~  173 (186)
                      |++++
T Consensus       381 f~RAl  385 (478)
T KOG1129|consen  381 FQRAL  385 (478)
T ss_pred             HHHHH
Confidence            76664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.47  E-value=9.2e-13  Score=81.58  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---NQAKRTI  147 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  147 (186)
                      ..++.+|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            678999999999999999999999999999876   5789999999999999999999999999999885   6789999


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcccC
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +.++..     .+++++|+..+..++..
T Consensus        83 ~~~~~~-----~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        83 GMSLQE-----LGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHH-----hCChHHHHHHHHHHHHH
Confidence            999888     99999999999988643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.46  E-value=1e-12  Score=99.83  Aligned_cols=166  Identities=14%  Similarity=0.085  Sum_probs=127.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ++.+.|-....||...|+-.+|.....+-++ .|.++..|..+|.....  ..-..++.+.....   ++.+...+|...
T Consensus       422 Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d--~s~yEkawElsn~~---sarA~r~~~~~~  495 (777)
T KOG1128|consen  422 ERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD--PSLYEKAWELSNYI---SARAQRSLALLI  495 (777)
T ss_pred             HhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC--hHHHHHHHHHhhhh---hHHHHHhhcccc
Confidence            4566778888899999999999999888888 67777788888765532  22222332222111   235566677777


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...++|+++..+++..++++|-....|+.+|.+..++++++.|..+|.+++.++|++.++|++++.++..     .++-.
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-----~~~k~  570 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-----LKKKK  570 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-----HhhhH
Confidence            7788999999999999999999999999999999999999999999999999999999999999988888     77777


Q ss_pred             ccchhhhhcccCCCCcc
Q 044796          164 MSTDNFKAVKDPNTGAY  180 (186)
Q Consensus       164 ~A~~~~~~~~~~~~~~~  180 (186)
                      +|...++.++.-+...+
T Consensus       571 ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  571 RAFRKLKEALKCNYQHW  587 (777)
T ss_pred             HHHHHHHHHhhcCCCCC
Confidence            77777777764443333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=2.4e-12  Score=100.74  Aligned_cols=101  Identities=10%  Similarity=0.078  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      +.++..+|.+....|.+++|...++.+++..|++..++..++.++.+++++++|+..+++++..+|+++.++..+|.++.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccchhhhhcccCCCC
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      .     +|++++|++.|++++.++++
T Consensus       166 ~-----~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        166 E-----IGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             H-----hcchHHHHHHHHHHHhcCCC
Confidence            9     99999999999999866554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.45  E-value=1.9e-12  Score=97.30  Aligned_cols=160  Identities=14%  Similarity=0.162  Sum_probs=141.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      -..+|..+.-.+..++|...++..+.+++.+|++++.....|... ..+...++...+.....+++.+.-+|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            456888899999999999999999999999999999999999877 5566677776666555566666699999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      ..++|++|+.+|..|+.++|++..+|..++.+..++++++.......+.+++.|..-..|..++.+...     .|.+..
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-----~g~y~~  161 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-----LGEYKM  161 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999977777     666666


Q ss_pred             cchhhh
Q 044796          165 STDNFK  170 (186)
Q Consensus       165 A~~~~~  170 (186)
                      |....+
T Consensus       162 A~~il~  167 (700)
T KOG1156|consen  162 ALEILE  167 (700)
T ss_pred             HHHHHH
Confidence            666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.45  E-value=1.6e-12  Score=85.52  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ....+..+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..+++++.++|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            45788999999999999999999999999887653   458999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--hhcccc-------ccchhhhhcccCCC
Q 044796          149 RKLKEMGNS--ILGRFG-------MSTDNFKAVKDPNT  177 (186)
Q Consensus       149 ~~~~~~~~~--~~~~~~-------~A~~~~~~~~~~~~  177 (186)
                      .++..+|..  ..|+++       +|+..|++++..+|
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999966643  255544       66666666654444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.45  E-value=1.6e-12  Score=85.92  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ..+..++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            355789999999999999999999999999887653   56899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---------hhccccccchhhhhcccCCCCcc
Q 044796          148 LRKLKEMGNS---------ILGRFGMSTDNFKAVKDPNTGAY  180 (186)
Q Consensus       148 ~~~~~~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~  180 (186)
                      +.++..+|..         ....++.|.+.+++++..+|+.+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            9999886652         12335667777777665554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.44  E-value=1.5e-13  Score=79.97  Aligned_cols=81  Identities=32%  Similarity=0.457  Sum_probs=72.9

Q ss_pred             hccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           86 LGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      .|++++|+..++++++.+|.  +...++.+|.|++..|++++|+..+++ .+.+|.++..+..+|.++..     +|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-----l~~y~   75 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-----LGKYE   75 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-----TT-HH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-----hCCHH
Confidence            68999999999999999995  567788899999999999999999999 88999999999999999999     99999


Q ss_pred             ccchhhhhc
Q 044796          164 MSTDNFKAV  172 (186)
Q Consensus       164 ~A~~~~~~~  172 (186)
                      +|++.|+++
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999998764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=5.8e-12  Score=87.84  Aligned_cols=164  Identities=12%  Similarity=0.097  Sum_probs=112.6

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc-----hhHHHhhCCCcchhH-HHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQS-----ASEKKEVAPAPEMAE-LRSICHSN   78 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~   78 (186)
                      +.-++.++|..|...|-++.|...|....+...--+.+...+..++.....     +.+.+.....++... ..+..|+.
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE  185 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence            344566666666666666666666666555433334444444444422211     222223333332222 23578888


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN-NQAKRTILRKLKEMGNS  157 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~  157 (186)
                      +|..+....+++.|+..+.+|++.+|++..+-..+|.+....|+|+.|++.++.+++.||+. +++...|..+|..    
T Consensus       186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----  261 (389)
T COG2956         186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ----  261 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----
Confidence            99988888999999999999999999999999999999999999999999999999999885 6778888888888    


Q ss_pred             hhccccccchhhhhcc
Q 044796          158 ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~~  173 (186)
                       +|+.++....+..+.
T Consensus       262 -lg~~~~~~~fL~~~~  276 (389)
T COG2956         262 -LGKPAEGLNFLRRAM  276 (389)
T ss_pred             -hCCHHHHHHHHHHHH
Confidence             666666666665553

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.44  E-value=2.3e-12  Score=89.37  Aligned_cols=134  Identities=16%  Similarity=0.084  Sum_probs=101.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh---hhhccchhhhh---------cCchhHH----HhhCCCcchh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER---AESASAPEAKE---------GQSASEK----KEVAPAPEMA   69 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~   69 (186)
                      ..+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.+...         ++...+.    ..+...|...
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            357899999999999999999999999999998887   56666665532         2222222    2233333322


Q ss_pred             HHH-------------HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           70 ELR-------------SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        70 ~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      ...             ......+|..+...|++.+|+..+++++...|+.   +.+++.+|.++..+|++++|..+++..
T Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            110             0122467889999999999999999999997654   689999999999999999999998888


Q ss_pred             HhcCCC
Q 044796          134 LEFDPS  139 (186)
Q Consensus       134 l~~~p~  139 (186)
                      ....|+
T Consensus       230 ~~~~~~  235 (235)
T TIGR03302       230 GANYPD  235 (235)
T ss_pred             HhhCCC
Confidence            766653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.44  E-value=1.6e-12  Score=71.84  Aligned_cols=65  Identities=25%  Similarity=0.417  Sum_probs=59.3

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      +.+|..++..|++++|+.+|+++++.+|+                                 ++.++..+|.++..+|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---------------------------------~~~a~~~lg~~~~~~g~~   47 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD---------------------------------NPEAWYLLGRILYQQGRY   47 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---------------------------------HHHHHHHHHHHHHHTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------------------------CHHHHHHHHHHHHHcCCH
Confidence            46799999999999999999999999999                                 458999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccH
Q 044796           90 EESIKECTKALELNPTYM  107 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~~  107 (186)
                      ++|+..|+++++.+|++|
T Consensus        48 ~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   48 DEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHCcCCC
Confidence            999999999999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.43  E-value=6.1e-12  Score=95.72  Aligned_cols=137  Identities=15%  Similarity=0.063  Sum_probs=105.8

Q ss_pred             HHHHHHHhHhHHHHcc---cHHHHHHHHHHHHhccCCChhhhhccchhhhh----c-----CchhHHHhhCCCcc--hhH
Q 044796            5 EANEAKLEGNKLFAEG---KYEEALLQYEVALRVASVPERAESASAPEAKE----G-----QSASEKKEVAPAPE--MAE   70 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~--~~~   70 (186)
                      .+-.++..|..++..+   ....|+.+|+++++++|++..++..++.....    .     ....+.........  ..+
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            4566788888887654   48899999999999999999988887664411    1     01112222221111  122


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      ..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            3457788889999899999999999999999999 4789999999999999999999999999999999885

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.4e-12  Score=93.61  Aligned_cols=149  Identities=15%  Similarity=0.134  Sum_probs=126.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ....+-.+|.+++..|++.+|+..|+++..++|....+.-..|.+. ..++.+.........-.........|+.-|...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL  310 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence            3456778999999999999999999999999999998888877766 445544444333222222233457888899999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +..++++.|+.+.++++..+|.+..++...|.++..+|+.++|+-.|+.|..+.|..-+++..+-.+|..
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999888877

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=8.2e-12  Score=91.10  Aligned_cols=153  Identities=14%  Similarity=0.019  Sum_probs=127.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..++.+++++++|....+..+|++.|-++..+-|.+|.++..++.++ .+++...+....-..-...|-+....-++|..
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay  635 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY  635 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999888 55555544443222222222333777789999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      |....-+++|+.+|+++--+.|+...+....+.|+.+.|+|+.|++.|+......|.+.+++..|.++.-.+|.
T Consensus       636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998888776655553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.41  E-value=6.2e-12  Score=94.55  Aligned_cols=140  Identities=22%  Similarity=0.272  Sum_probs=114.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+..+|..+...+++.+|+..|++++++.-..                         ....++..+.++.++|..|
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-------------------------~G~~h~~va~~l~nLa~ly  293 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-------------------------FGEDHPAVAATLNNLAVLY  293 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-------------------------cCCCCHHHHHHHHHHHHHH
Confidence            344556679999999999999999999999875431                         2233344568999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD--------PSNNQAKRTI  147 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l  147 (186)
                      ...|+|++|..++++|+++.        |.-+..+..++.++...+++++|..++.+++++-        |.-+.++.++
T Consensus       294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl  373 (508)
T KOG1840|consen  294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL  373 (508)
T ss_pred             hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence            99999999999999999873        3345678889999999999999999999998863        2335667777


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      |.++..     +|+|++|.+.|+.++
T Consensus       374 ~~l~~~-----~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  374 AELYLK-----MGKYKEAEELYKKAI  394 (508)
T ss_pred             HHHHHH-----hcchhHHHHHHHHHH
Confidence            777777     999999999999885

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=5e-12  Score=88.17  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT  146 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  146 (186)
                      ...+...+..+|....+|++||...++..++.+..     ...+..++..+....+.+.|...+.++++.+|++..+-..
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            34677888889999999999999999999988765     5678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          147 ILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       147 l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      +|++...     .|+|+.|++.++.++..+++
T Consensus       220 lG~v~~~-----~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         220 LGRVELA-----KGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             hhHHHHh-----ccchHHHHHHHHHHHHhChH
Confidence            9999999     99999999999998765543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.1e-11  Score=85.94  Aligned_cols=99  Identities=20%  Similarity=0.216  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH---FEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ++.-|..+|.+|+..|++..|...|.+++++.|++++.+..+|.++....+   ..++...|++++.++|++..+...|+
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA  234 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA  234 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            338999999999999999999999999999999999999999999776553   56899999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ..+..     .|+|.+|+..|++.++.
T Consensus       235 ~~afe-----~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         235 FAAFE-----QGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHH-----cccHHHHHHHHHHHHhc
Confidence            87777     99999999999988643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.40  E-value=5.3e-12  Score=95.33  Aligned_cols=167  Identities=14%  Similarity=0.073  Sum_probs=137.7

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC-chhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ-SASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      |...+...+..|+...|...+.++++.+|...+.|.+-..+....+ .+.+...+..... ......+|+.-+.....++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-~sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-ISGTERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchhhHHHhHHHHHhh
Confidence            4445567788999999999999999999999999988776664433 3444443322211 1124488999999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccch
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTD  167 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~  167 (186)
                      +.++|+..++++++..|+.+..|..+|.++.++++.+.|...|...++..|+++..|..++.+-..     .|....|..
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-----~~~~~rAR~  740 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-----DGQLVRARS  740 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-----hcchhhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999987777     778888889


Q ss_pred             hhhhc--ccCCCCccc
Q 044796          168 NFKAV--KDPNTGAYS  181 (186)
Q Consensus       168 ~~~~~--~~~~~~~~~  181 (186)
                      .++++  .+|++..+.
T Consensus       741 ildrarlkNPk~~~lw  756 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLW  756 (913)
T ss_pred             HHHHHHhcCCCcchhH
Confidence            99877  477665543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.40  E-value=2.1e-12  Score=101.19  Aligned_cols=164  Identities=16%  Similarity=0.145  Sum_probs=134.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhh-CCCcchhH--HHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV-APAPEMAE--LRSICHSNRGI   81 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~a~   81 (186)
                      -+-.+-.+|..|..--+...|.+||.+|.+++|.+..++.+.+..+.+....+....+ ....+..+  .....|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            4566778899998888999999999999999999999999888777554443322221 11111111  13366777999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      .|...+++.+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.-..+..+.....     .|+
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-----~Gk  645 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-----NGK  645 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-----hhh
Confidence            999999999999999999999999999999999999999999999999999999999999999988877777     888


Q ss_pred             ccccchhhhhcc
Q 044796          162 FGMSTDNFKAVK  173 (186)
Q Consensus       162 ~~~A~~~~~~~~  173 (186)
                      |.+|...+..++
T Consensus       646 Ykeald~l~~ii  657 (1238)
T KOG1127|consen  646 YKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHHH
Confidence            888888776653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.39  E-value=2.5e-11  Score=74.57  Aligned_cols=99  Identities=21%  Similarity=0.110  Sum_probs=88.2

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      +.+++.|..+-..|+.++|+.+|++++....+.                          +    ....+++.+|.++...
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--------------------------~----~~~~a~i~lastlr~L   51 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG--------------------------A----DRRRALIQLASTLRNL   51 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--------------------------h----HHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999976652                          1    1337899999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           87 GKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      |++++|+..+++++...|+   +..+...++.++...|++++|+..+..++.
T Consensus        52 G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   52 GRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999888   778888899999999999999999988875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.38  E-value=3.3e-11  Score=85.00  Aligned_cols=179  Identities=13%  Similarity=0.176  Sum_probs=131.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh---hhhccchhh-------------hhcCchhHHHhhCCCcc
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER---AESASAPEA-------------KEGQSASEKKEVAPAPE   67 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~~   67 (186)
                      +-..+..++|.+++++|.+++|..-|+..|+.+|++..   +...++.+.             ..++...+...+.....
T Consensus       104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            34556778899999999999999999999999986543   333232211             12344445555555555


Q ss_pred             hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ..+.++..+..++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+...++-..
T Consensus       184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y  263 (504)
T KOG0624|consen  184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY  263 (504)
T ss_pred             cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence            55667789999999999999999999999999999999999999999999999999999999999999999977654333


Q ss_pred             HH---HHHHHHH---H-hhccccccchhhhhcccCCCCcccc
Q 044796          148 LR---KLKEMGN---S-ILGRFGMSTDNFKAVKDPNTGAYSI  182 (186)
Q Consensus       148 ~~---~~~~~~~---~-~~~~~~~A~~~~~~~~~~~~~~~~~  182 (186)
                      -.   +...+-.   . -.+++.++++..++.+..+|....+
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i  305 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI  305 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence            22   2211111   1 2667888888888876544443333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.38  E-value=5e-11  Score=74.51  Aligned_cols=109  Identities=22%  Similarity=0.285  Sum_probs=96.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..++..|...++.|+|.+|++.|+.+....|..+                          -    ...+...+|.+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~--------------------------y----a~qAqL~l~yayy   58 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE--------------------------Y----AEQAQLDLAYAYY   58 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc--------------------------c----cHHHHHHHHHHHH
Confidence            367899999999999999999999999999999822                          1    2388899999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhcC---------------HHHHHHHHHHHHhcCCCChHH
Q 044796           85 KLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEH---------------FEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~  143 (186)
                      +.+++++|+..+++-++++|+++   .+++..|.+++.+..               ..+|+..|++.++..|++.-+
T Consensus        59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            99999999999999999999885   589999999999887               889999999999999987654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.38  E-value=4.9e-11  Score=80.81  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=104.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.++..|...+..|+|.+|+..|++++...|.                          .+.    .+.+.+.+|.++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--------------------------s~~----a~~A~l~la~a~y   53 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--------------------------SPY----APQAQLMLAYAYY   53 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--------------------------STT----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------------ChH----HHHHHHHHHHHHH
Confidence            5788999999999999999999999999999998                          332    2388999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCCChHH---HHHH
Q 044796           85 KLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE-----------HFEEAIADMKKILEFDPSNNQA---KRTI  147 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~---~~~l  147 (186)
                      ..|++++|+..+++.++..|++   +.+++.+|.+++.+.           ...+|+..|+..+...|+++-+   ...+
T Consensus        54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l  133 (203)
T PF13525_consen   54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL  133 (203)
T ss_dssp             HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence            9999999999999999999876   568999999977654           3458999999999999998533   3333


Q ss_pred             HHHHHHHH-------HH--hhccccccchhhhhcc
Q 044796          148 LRKLKEMG-------NS--ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       148 ~~~~~~~~-------~~--~~~~~~~A~~~~~~~~  173 (186)
                      ..+-..++       ..  ..|.+..|+..++.++
T Consensus       134 ~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~  168 (203)
T PF13525_consen  134 AELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI  168 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            33333322       22  2667777887777765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.38  E-value=3.1e-12  Score=71.33  Aligned_cols=66  Identities=29%  Similarity=0.422  Sum_probs=61.2

Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      +..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            568999999999999999999999999999999999999999999999999999999888777664

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.38  E-value=5.7e-12  Score=71.27  Aligned_cols=69  Identities=28%  Similarity=0.479  Sum_probs=64.6

Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ..++...++|++|+.++++++..+|+++.++..+|.++..+|++++|+..|+++++..|+++.+....+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999988766544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.38  E-value=5.6e-11  Score=81.56  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=99.7

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      +..++.|..++..|+|..|...|..-++..|..                          +    ..+.+++++|.+++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--------------------------~----~~~nA~yWLGe~~y~q  191 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--------------------------T----YTPNAYYWLGESLYAQ  191 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------------------------c----ccchhHHHHHHHHHhc
Confidence            448899999999999999999999999999992                          2    2348999999999999


Q ss_pred             ccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796           87 GKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT  146 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  146 (186)
                      |+|+.|...|..+++-.|++   |++++.+|.+...+|+.++|...|+++++.-|+...+...
T Consensus       192 g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         192 GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            99999999999999987765   7899999999999999999999999999999998877554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2e-11  Score=87.92  Aligned_cols=166  Identities=17%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..|+--|...+..+++..|+.+-+++|+.+|.+..++..-|... ..+..+.+.-++.......|.+-++|..+-.+|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL  379 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL  379 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            344555555566666666666666666666666666666555444 2233333333332222222223333333333333


Q ss_pred             hhcc------------------------------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHH
Q 044796           85 KLGK------------------------------------FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA  128 (186)
Q Consensus        85 ~~~~------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  128 (186)
                      ..|+                                    -++|...++++++++|....+...++.++...|.+++++.
T Consensus       380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence            3222                                    2567777778888888888888889999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .+++++...|++. .+..+|+++..     ...+.+|.++|..++..+|
T Consensus       460 LLe~~L~~~~D~~-LH~~Lgd~~~A-----~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  460 LLEKHLIIFPDVN-LHNHLGDIMRA-----QNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHHHhhccccH-HHHHHHHHHHH-----hhhHHHHHHHHHHHHhcCc
Confidence            9999998888755 67788888888     8888999999988864433

>PRK11906 transcriptional regulator; Provisional

Probab=99.35  E-value=2.3e-11  Score=89.20  Aligned_cols=155  Identities=13%  Similarity=-0.005  Sum_probs=100.0

Q ss_pred             HHHHhHhHHHHcc---cHHHHHHHHHHHH---hccCCChhhhhccchhhhhc------C-c-------hhHHHhhCCCcc
Q 044796            8 EAKLEGNKLFAEG---KYEEALLQYEVAL---RVASVPERAESASAPEAKEG------Q-S-------ASEKKEVAPAPE   67 (186)
Q Consensus         8 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~------~-~-------~~~~~~~~~~~~   67 (186)
                      .++..|...+..+   ..+.|+.+|.+++   .++|....++..++.+....      + .       ..+..+++..+.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4466776665544   4678899999999   99999888887777554221      0 1       222233444443


Q ss_pred             hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                          ++.+...+|.+....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|...++++++++|.-..+-...
T Consensus       337 ----Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~  412 (458)
T PRK11906        337 ----DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK  412 (458)
T ss_pred             ----CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence                3477777777777777777777777777777777777777777777777777777777777777777644332211


Q ss_pred             HHHHHHHH-HHhhccccccchhhhh
Q 044796          148 LRKLKEMG-NSILGRFGMSTDNFKA  171 (186)
Q Consensus       148 ~~~~~~~~-~~~~~~~~~A~~~~~~  171 (186)
                      -     +- .......+.|+..|-+
T Consensus       413 ~-----~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        413 E-----CVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             H-----HHHHHcCCchhhhHHHHhh
Confidence            1     11 1124556666666543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.34  E-value=1.6e-10  Score=80.25  Aligned_cols=139  Identities=14%  Similarity=0.165  Sum_probs=108.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.++..|...+..|+|++|+..|++++...|..+                              ....+...+|.++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------------------------~a~~a~l~la~ayy   80 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------------------------YSQQVQLDLIYAYY   80 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------------------------HHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999832                              12367789999999


Q ss_pred             hhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhc---------------C---HHHHHHHHHHHHhcCCCCh--
Q 044796           85 KLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE---------------H---FEEAIADMKKILEFDPSNN--  141 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~--  141 (186)
                      +.+++++|+..+++.++.+|++   +.+++.+|.+...++               |   ..+|+..|++.++..|++.  
T Consensus        81 ~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya  160 (243)
T PRK10866         81 KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT  160 (243)
T ss_pred             hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999999999999998877   568999999875554               1   2578899999999999874  


Q ss_pred             -HHHHHHHHHHHHHHH-------H--hhccccccchhhhhcc
Q 044796          142 -QAKRTILRKLKEMGN-------S--ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       142 -~~~~~l~~~~~~~~~-------~--~~~~~~~A~~~~~~~~  173 (186)
                       ++...+..+...++.       .  ..|.+..|+.-++.++
T Consensus       161 ~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~  202 (243)
T PRK10866        161 TDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML  202 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence             344444333333322       1  2667777777777665

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.34  E-value=4.4e-12  Score=96.49  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=113.2

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      .+....|...+..++|+++.++++.+++++|-                                 ....|+.+|.+..+.
T Consensus       486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~npl---------------------------------q~~~wf~~G~~ALql  532 (777)
T KOG1128|consen  486 RAQRSLALLILSNKDFSEADKHLERSLEINPL---------------------------------QLGTWFGLGCAALQL  532 (777)
T ss_pred             HHHHhhccccccchhHHHHHHHHHHHhhcCcc---------------------------------chhHHHhccHHHHHH
Confidence            34444555556667777777777777777777                                 348999999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      ++++.|..+|.+++..+|++..+|.+++.++...|+..+|...+.++++.+-.++.+|.+.-.+...     .|.+++|+
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-----vge~eda~  607 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-----VGEFEDAI  607 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-----cccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988888     89999999


Q ss_pred             hhhhhcc
Q 044796          167 DNFKAVK  173 (186)
Q Consensus       167 ~~~~~~~  173 (186)
                      +.+.+.+
T Consensus       608 ~A~~rll  614 (777)
T KOG1128|consen  608 KAYHRLL  614 (777)
T ss_pred             HHHHHHH
Confidence            9998774

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.34  E-value=2e-10  Score=70.20  Aligned_cols=122  Identities=23%  Similarity=0.258  Sum_probs=100.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..+-..|..+...|+.+.|++.|.++|.+.|.                                 ++.+|.++++.+
T Consensus        41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------------------------------raSayNNRAQa~   87 (175)
T KOG4555|consen   41 KASRELELKAIALAEAGDLDGALELFGQALCLAPE---------------------------------RASAYNNRAQAL   87 (175)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---------------------------------chHhhccHHHHH
Confidence            45566777888899999999999999999999999                                 448999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 044796           84 LKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI  158 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  158 (186)
                      .-+|+.++|+..+++++++..+.    ..++...|.+|..+|+-+.|...|+.+-++......-..-.-.-|..+++.+
T Consensus        88 RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~M  166 (175)
T KOG4555|consen   88 RLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQM  166 (175)
T ss_pred             HHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHH
Confidence            99999999999999999985433    4678999999999999999999999999887654433333333445556554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.33  E-value=2.4e-11  Score=93.01  Aligned_cols=105  Identities=26%  Similarity=0.218  Sum_probs=96.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..++..|.++...|.+.+|...|..++.++|+++                                 .....+|.++.
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------------------------------~s~~Ala~~ll  729 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------------------------------PSMTALAELLL  729 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------------------------------HHHHHHHHHHH
Confidence            456789999999999999999999999999999933                                 67778899999


Q ss_pred             hhccHHHHHH--HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           85 KLGKFEESIK--ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        85 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      ..|+-.-|..  ....+++++|.++++|+.+|.++..+|+.++|.++|..++++++.+|-
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9998777766  999999999999999999999999999999999999999999998874

>TIGR00540 hemY_coli hemY protein

Probab=99.33  E-value=3.3e-11  Score=90.04  Aligned_cols=132  Identities=12%  Similarity=-0.114  Sum_probs=105.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..+...|..+...|++++|...++++++..|++...                               ...........
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------------------------------~~~~l~~~~~l  310 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------------------------------SLPLCLPIPRL  310 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------------------------------hhHHHHHhhhc
Confidence            45677778888888888888888888888888883211                               00122333334


Q ss_pred             hhccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHhcCHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796           85 KLGKFEESIKECTKALELNPTYM--KALIRRAEAHEKLEHFEEAIADMK--KILEFDPSNNQAKRTILRKLKEMGNSILG  160 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~  160 (186)
                      ..++.+.++..++++++.+|+++  ..+..+|.++++.|++++|.++|+  .+++.+|+... ...++.++..     .|
T Consensus       311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-----~g  384 (409)
T TIGR00540       311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-----AG  384 (409)
T ss_pred             CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-----cC
Confidence            45778889999999999999999  888899999999999999999999  67888887655 5589999999     89


Q ss_pred             cccccchhhhhcc
Q 044796          161 RFGMSTDNFKAVK  173 (186)
Q Consensus       161 ~~~~A~~~~~~~~  173 (186)
                      +.++|.++|++++
T Consensus       385 ~~~~A~~~~~~~l  397 (409)
T TIGR00540       385 DKAEAAAMRQDSL  397 (409)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.32  E-value=7.6e-11  Score=87.81  Aligned_cols=156  Identities=10%  Similarity=-0.009  Sum_probs=90.6

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc----------------------------------
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS----------------------------------   55 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~----------------------------------   55 (186)
                      ..+..+...|++++|...+++..+.+|+++.+...++..+ ..++.                                  
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3477888888888888888888888888887766655333 11111                                  


Q ss_pred             --------hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-------------------------
Q 044796           56 --------ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL-------------------------  102 (186)
Q Consensus        56 --------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------------------  102 (186)
                              +.....+...|...+.++.+...+|..+...|+.++|...++++++.                         
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~  317 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVL  317 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHH
Confidence                    11111222333334445566667777777777777777777776663                         


Q ss_pred             ------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          103 ------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       103 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                            +|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++..     .|+.++|..+|++.
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-----~g~~~~A~~~~~~~  387 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-----LHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence                  3444444555555555555555555555555555555332 3345555555     55555555555544

>TIGR00540 hemY_coli hemY protein

Probab=99.31  E-value=1.3e-10  Score=86.91  Aligned_cols=141  Identities=18%  Similarity=0.151  Sum_probs=93.7

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHH-HHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELR-SICHSNR   79 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (186)
                      +.+++......|...+..|+|+.|.+.+.++.+..|+....+...+... ..++.+.+...+.......|.. ..+....
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~  159 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR  159 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence            3456778888999999999999999999999999888555544444443 3344444444333221111111 1233344


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      +.++...|++++|...+++.++..|+++.++..++.++...|++++|...+.+..+..+.++.
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            677777777777777777777777777777777777777777777777777777766544443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.31  E-value=1.3e-10  Score=85.37  Aligned_cols=115  Identities=21%  Similarity=0.181  Sum_probs=102.8

Q ss_pred             HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 044796           17 FAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKEC   96 (186)
Q Consensus        17 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   96 (186)
                      ...++++.|+..+++..+.+|+                                    ....++.++...++..+|++.+
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe------------------------------------v~~~LA~v~l~~~~E~~AI~ll  223 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE------------------------------------VAVLLARVYLLMNEEVEAIRLL  223 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc------------------------------------HHHHHHHHHHhcCcHHHHHHHH
Confidence            3467899999999998888877                                    3345788888889999999999


Q ss_pred             HHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796           97 TKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus        97 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ++++..+|.+...+...+..+...++++.|+...++++.+.|++...|..|+.+|..     .|+++.|+-.+..+
T Consensus       224 ~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-----~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  224 NEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-----LGDFENALLALNSC  294 (395)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-----cCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999     99999988777655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.31  E-value=2.1e-10  Score=87.12  Aligned_cols=166  Identities=15%  Similarity=0.124  Sum_probs=129.1

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh----hhc-------------------------
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA----KEG-------------------------   53 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----~~~-------------------------   53 (186)
                      ++....+-.+|.++...|++++|...|...|+.+|++...+..+..+.    ...                         
T Consensus        35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~  114 (517)
T PF12569_consen   35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR  114 (517)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence            455667778999999999999999999999999999986655443222    000                         


Q ss_pred             ---------------------------Cc-----------------------hhHHHhhCCC----------cchhHHHH
Q 044796           54 ---------------------------QS-----------------------ASEKKEVAPA----------PEMAELRS   73 (186)
Q Consensus        54 ---------------------------~~-----------------------~~~~~~~~~~----------~~~~~~~~   73 (186)
                                                 ..                       ......+...          ........
T Consensus       115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l  194 (517)
T PF12569_consen  115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL  194 (517)
T ss_pred             HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence                                       00                       0001111110          01111124


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ++++.+|+.|...|++++|+.++++++...|+.++.+...|.++.+.|++.+|...++.+..+|+.|--+....+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             HHHHhhccccccchhhhhcc
Q 044796          154 MGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~  173 (186)
                           .|++++|.+.+..-.
T Consensus       275 -----a~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  275 -----AGRIEEAEKTASLFT  289 (517)
T ss_pred             -----CCCHHHHHHHHHhhc
Confidence                 888888888876553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.29  E-value=5.1e-11  Score=94.64  Aligned_cols=133  Identities=17%  Similarity=0.028  Sum_probs=78.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc-hhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQS-ASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ...+++..+...+...+++++|+...+.+++.+|+....++.+|.+....+. .++                ....++..
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~----------------~lv~~l~~   92 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDS----------------NLLNLIDS   92 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhh----------------hhhhhhhh
Confidence            3467888999999999999999999999999999999999999987633222 111                11123333


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .....++ .++.++-..+...+.+..+++.+|.||.++|+.++|...|+++++++|+++.+..++|..+..
T Consensus        93 ~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         93 FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            3333333 333333333333444444444445555455555555555555555555444444444444444

>PRK15331 chaperone protein SicA; Provisional

Probab=99.29  E-value=3.2e-11  Score=77.01  Aligned_cols=97  Identities=8%  Similarity=-0.043  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      -...+..|.-++..|++++|...|.-....+|.++..|..+|.|+..+++|++|+..|..+..+++++|...+..|.|+.
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccchhhhhccc
Q 044796          153 EMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      .     +|+...|+.+|+.+++
T Consensus       117 ~-----l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        117 L-----MRKAAKARQCFELVNE  133 (165)
T ss_pred             H-----hCCHHHHHHHHHHHHh
Confidence            9     8899999999988764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.7e-10  Score=79.20  Aligned_cols=108  Identities=24%  Similarity=0.260  Sum_probs=91.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..++-|..+|.+++..|++..|...|.+++++.|+++                                 ..+..+|.++
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---------------------------------~~~~g~aeaL  200 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---------------------------------EILLGLAEAL  200 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---------------------------------HHHHHHHHHH
Confidence            4567899999999999999999999999999999944                                 5555555555


Q ss_pred             hhhc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796           84 LKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        84 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      ....   ...++...+++++..+|+++.+.+.+|..++..|+|.+|...|+..++..|.+..-.
T Consensus       201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            4332   457999999999999999999999999999999999999999999999999876543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.27  E-value=2.3e-10  Score=73.49  Aligned_cols=98  Identities=22%  Similarity=0.253  Sum_probs=84.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..+.+.+|..++..|++++|+..|+.++...|+.                              ...+.+...+|.++..
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------------------------~l~~~a~l~LA~~~~~   97 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------------------------ELKPLARLRLARILLQ   97 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------------------------HHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999987661                              1234678889999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (186)
                      .|++++|+..++. +...+..+.++..+|.++...|++++|...|++++
T Consensus        98 ~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   98 QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999976 44455667889999999999999999999999875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.27  E-value=6.2e-11  Score=82.90  Aligned_cols=97  Identities=10%  Similarity=0.080  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHH-hhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHH
Q 044796           73 SICHSNRGICF-LKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS---NNQAKR  145 (186)
Q Consensus        73 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~  145 (186)
                      ...++..|..+ +..|+|++|+..|+..++..|+.   +.+++++|.+++..|++++|+..|.+++...|+   .++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            36777787776 56799999999999999999988   689999999999999999999999999998887   467788


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhccc
Q 044796          146 TILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      .+|.++..     +|+++.|+..|+.++.
T Consensus       222 klg~~~~~-----~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        222 KVGVIMQD-----KGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHH-----cCCHHHHHHHHHHHHH
Confidence            88888887     8999999999998863

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.25  E-value=2.4e-10  Score=86.19  Aligned_cols=140  Identities=20%  Similarity=0.165  Sum_probs=111.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+.++|..|...|+|++|..++++|+++....                         ....++..+..+.+++.++
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-------------------------~~~~~~~v~~~l~~~~~~~  335 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-------------------------LGASHPEVAAQLSELAAIL  335 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-------------------------hccChHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999886551                         1122333457888999999


Q ss_pred             hhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHH
Q 044796           84 LKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD--------PSNNQAKRTI  147 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l  147 (186)
                      ..++++++|+.++++++++        +|.-+..+.++|.+++.+|++++|.+.|++++++.        +........+
T Consensus       336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l  415 (508)
T KOG1840|consen  336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL  415 (508)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence            9999999999999999986        23446789999999999999999999999999875        2334456666


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +..+.+     .+.+.+|...|..++
T Consensus       416 a~~~~~-----~k~~~~a~~l~~~~~  436 (508)
T KOG1840|consen  416 AEAYEE-----LKKYEEAEQLFEEAK  436 (508)
T ss_pred             HHHHHH-----hcccchHHHHHHHHH
Confidence            666666     778888888887663

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.24  E-value=7.4e-10  Score=82.55  Aligned_cols=133  Identities=15%  Similarity=0.083  Sum_probs=82.2

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +.+++...+..|...+..|+|++|.+...++-+..+. +.                                -.+...+.
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~--------------------------------l~~llaA~  126 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PV--------------------------------VNYLLAAE  126 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hH--------------------------------HHHHHHHH
Confidence            3457788889999999999999999777765554222 22                                22222344


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKA-LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG  160 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  160 (186)
                      .....|+++.|..++.++.+.+|++..+ ....+.++...|++++|+..+++..+.+|+++.+...++.++..     .|
T Consensus       127 aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----~g  201 (398)
T PRK10747        127 AAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----TG  201 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HH
Confidence            4466666666666666666666655322 22335666666666666666666666666666666666666665     55


Q ss_pred             cccccchhhhhc
Q 044796          161 RFGMSTDNFKAV  172 (186)
Q Consensus       161 ~~~~A~~~~~~~  172 (186)
                      ++++|++.+...
T Consensus       202 dw~~a~~~l~~l  213 (398)
T PRK10747        202 AWSSLLDILPSM  213 (398)
T ss_pred             hHHHHHHHHHHH
Confidence            555555544433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.24  E-value=1.2e-10  Score=85.52  Aligned_cols=166  Identities=16%  Similarity=0.107  Sum_probs=118.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhh---hhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERA---ESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      +.+..+..+|..+...|+++.+...+.++....|.+.+.   ....+... ..++.+.+...+.......|.+..++.. 
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-   82 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-   82 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence            456788999999999999999999999999988876543   33333333 3344444443332222222223344443 


Q ss_pred             HHHHhhhc----cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           80 GICFLKLG----KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        80 a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      +..+...|    ....+...+......+|....++..+|.++...|++++|+..++++++++|+++.++..++.++..  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~--  160 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM--  160 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH--
Confidence            44444444    344444444444456777778888899999999999999999999999999999999999999999  


Q ss_pred             HHhhccccccchhhhhcccC
Q 044796          156 NSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~  175 (186)
                         .|++++|+..+++++..
T Consensus       161 ---~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         161 ---QGRFKEGIAFMESWRDT  177 (355)
T ss_pred             ---cCCHHHHHHHHHhhhhc
Confidence               99999999999988643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.23  E-value=6.9e-11  Score=65.80  Aligned_cols=68  Identities=24%  Similarity=0.324  Sum_probs=60.5

Q ss_pred             HHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHH
Q 044796           16 LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKE   95 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   95 (186)
                      ++..|++++|+..|++++..+|++                                 ..++..+|.++...|++++|...
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---------------------------------~~~~~~la~~~~~~g~~~~A~~~   47 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---------------------------------PEARLLLAQCYLKQGQYDEAEEL   47 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---------------------------------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence            367899999999999999999993                                 38889999999999999999999


Q ss_pred             HHHHHhcCcccHHHHHHHHHH
Q 044796           96 CTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        96 ~~~al~~~p~~~~~~~~lg~~  116 (186)
                      +++++..+|+++.++..++.+
T Consensus        48 l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen   48 LERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHCCHGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHhcC
Confidence            999999999998888777653

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.22  E-value=7.2e-11  Score=91.78  Aligned_cols=107  Identities=12%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ......|+..+..|++++|...+.++++.+|.++.+|+.+|.+|..+|+.++++..+-.|-.++|.+.+.|..++.....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            45556677777788888888888888888888888888888888888888888888888888888888888888887777


Q ss_pred             HHHHhhccccccchhhhhcccCCCCccccccc
Q 044796          154 MGNSILGRFGMSTDNFKAVKDPNTGAYSISFQ  185 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  185 (186)
                           +|.+++|+-+|.+++..+|..+.+.++
T Consensus       220 -----~~~i~qA~~cy~rAI~~~p~n~~~~~e  246 (895)
T KOG2076|consen  220 -----LGNINQARYCYSRAIQANPSNWELIYE  246 (895)
T ss_pred             -----cccHHHHHHHHHHHHhcCCcchHHHHH
Confidence                 788888888888887777666665543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=9.6e-11  Score=78.61  Aligned_cols=100  Identities=27%  Similarity=0.465  Sum_probs=93.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+...|+.++...+|..|+.+|.++|.++|.                                 .+..|.+.+.|+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~---------------------------------~~~Y~tnralch   54 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT---------------------------------VASYYTNRALCH   54 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCC---------------------------------cchhhhhHHHHH
Confidence            35678889999999999999999999999999999                                 237889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      +++++|+.+...+.++++++|+...+++.+|.++.....|++|+..+.++..+
T Consensus        55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.22  E-value=9e-11  Score=72.14  Aligned_cols=95  Identities=24%  Similarity=0.214  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS---NNQAKRTI  147 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  147 (186)
                      .+.+.+|.++...|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999975443   678999999999999999999999999999898   77888888


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +.++..     .|+.++|+..+-.++
T Consensus        82 Al~L~~-----~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYN-----LGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHH-----CCCHHHHHHHHHHHH
Confidence            877777     899999998876554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.7e-10  Score=79.91  Aligned_cols=110  Identities=32%  Similarity=0.512  Sum_probs=98.5

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      -+.|+.+..-|+.+++.++|..|+.+|.++|+..-.+++                             .++.+|.++|.+
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------------------------lnavLY~NRAAa  128 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------------------------LNAVLYTNRAAA  128 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------------------------HHHHHHhhHHHH
Confidence            357899999999999999999999999999998766432                             255889999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ....|+|..|+..+.+++.++|++..++++-|.|++.+.++.+|+.+.+..+.++.+..
T Consensus       129 ~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  129 QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999888887765443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.6e-10  Score=74.52  Aligned_cols=119  Identities=31%  Similarity=0.448  Sum_probs=99.6

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc--------cCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRV--------ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRS   73 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (186)
                      +++....+.+.|+.++..|+|.+|...|..|+..        .|..++..                       .......
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~-----------------------eLdk~~t  230 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWL-----------------------ELDKMIT  230 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHH-----------------------HHHHhhh
Confidence            4566778999999999999999999999998754        23322211                       1111223


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      ..+.+.++|+...|+|-+++..+...+..+|++..+++..|.+....=+..+|...|.++++++|.-..+
T Consensus       231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            6788999999999999999999999999999999999999999999999999999999999999986554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.20  E-value=1.8e-10  Score=65.88  Aligned_cols=73  Identities=29%  Similarity=0.409  Sum_probs=61.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+..+|.++...|++++|+.+|++++++...                          .+...+..+.++.++|.++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------------~~~~~~~~a~~~~~lg~~~   56 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQ--------------------------LGDDHPDTANTLNNLGECY   56 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------------------------TTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999987433                          2333444568999999999


Q ss_pred             hhhccHHHHHHHHHHHHhc
Q 044796           84 LKLGKFEESIKECTKALEL  102 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~  102 (186)
                      ..+|++++|+.++++++++
T Consensus        57 ~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   57 YRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhh
Confidence            9999999999999999976

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.19  E-value=2.5e-10  Score=64.48  Aligned_cols=70  Identities=31%  Similarity=0.445  Sum_probs=63.1

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES   92 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   92 (186)
                      ...++..++|++|+.++++++.++|+                                 ++..+..+|.++..+|++++|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---------------------------------~~~~~~~~a~~~~~~g~~~~A   48 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD---------------------------------DPELWLQRARCLFQLGRYEEA   48 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc---------------------------------cchhhHHHHHHHHHhccHHHH
Confidence            56789999999999999999999999                                 338899999999999999999


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHH
Q 044796           93 IKECTKALELNPTYMKALIRRAE  115 (186)
Q Consensus        93 ~~~~~~al~~~p~~~~~~~~lg~  115 (186)
                      +..++++++..|+++.+...++.
T Consensus        49 ~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   49 LEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHh
Confidence            99999999999999887665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.18  E-value=1.9e-10  Score=65.81  Aligned_cols=67  Identities=24%  Similarity=0.378  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----C---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           70 ELRSICHSNRGICFLKLGKFEESIKECTKALEL----N---PTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      |..+.++.++|.++..+|++++|+.+|++++.+    .   |....++.++|.++..+|++++|+.++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345689999999999999999999999999976    1   223668999999999999999999999999875

...

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.18  E-value=7.8e-10  Score=83.98  Aligned_cols=175  Identities=14%  Similarity=-0.021  Sum_probs=141.3

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..|..-+......++.++|+..++++++.+|+....|..+|.+. ..++.+.+..++..-....|.....|..++.+-.+
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            34555556667789999999999999999999999999999988 55666777777665555666666999999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH----------------
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR----------------  149 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~----------------  149 (186)
                      .|+.-.|...++++.-.||++...|...-..-.+.|..+.|.....+|++-.|+++..|..-..                
T Consensus       732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk  811 (913)
T KOG0495|consen  732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK  811 (913)
T ss_pred             hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887665543221                


Q ss_pred             -------HHHHHHHH--hhccccccchhhhhcc--cCCCCccc
Q 044796          150 -------KLKEMGNS--ILGRFGMSTDNFKAVK--DPNTGAYS  181 (186)
Q Consensus       150 -------~~~~~~~~--~~~~~~~A~~~~~~~~--~~~~~~~~  181 (186)
                             ++...+..  ...+++.|.+.|.+++  +|+.+...
T Consensus       812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w  854 (913)
T KOG0495|consen  812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW  854 (913)
T ss_pred             hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence                   33333333  2788999999999885  66665544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.16  E-value=2e-10  Score=84.26  Aligned_cols=70  Identities=21%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---LIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      ..|..+..++++|.++..+|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            345567999999999999999999999999999999999865   9999999999999999999999999973

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.16  E-value=9.1e-11  Score=85.89  Aligned_cols=116  Identities=31%  Similarity=0.492  Sum_probs=106.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..++.+...|...+..+.|+.|+..|.++|+++|+.                                 +..+.+++.++
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------------------------------a~~~anRa~a~   48 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------------------------------AIYFANRALAH   48 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------------------------------eeeechhhhhh
Confidence            357778889999999999999999999999999992                                 26777888999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      .+.++|..|+..+.++++.+|....+|++.|.+...++.+.+|+..|+....+.|+++.+...+..|-.
T Consensus        49 lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   49 LKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             eeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999887775443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=3.9e-10  Score=74.93  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=100.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ++|..++++|..|=..|-+.-|.--|.+++.+.|+                          .       +.++..+|..+
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~--------------------------m-------~~vfNyLG~Yl  109 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD--------------------------M-------PEVFNYLGIYL  109 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC--------------------------c-------HHHHHHHHHHH
Confidence            56888999999999999999999999999999999                          3       38889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      ...|+|+.|...|+..++++|.+..++.++|..++.-|++.-|.+.+.+-.+-+|++|--
T Consensus       110 ~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         110 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             HhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            999999999999999999999999999999999999999999999999999999998854

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.14  E-value=2.1e-09  Score=86.05  Aligned_cols=143  Identities=13%  Similarity=0.024  Sum_probs=105.9

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhcc--chhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESAS--APEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .+..++...|+.++|+.++++++  +|.+......+  +..+ ..++...+...+.......|.++.++..++..+...+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~  150 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG  150 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence            55566667788888888888888  44444444433  4455 3355555554444444444444578888899999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      +.++|+..+++++..+|.+... ..++.++...++..+|+..++++++.+|++.++...+..++...|.
T Consensus       151 q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        151 RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999986554 5567777677888789999999999999999999999988888443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=4.6e-10  Score=80.77  Aligned_cols=102  Identities=25%  Similarity=0.368  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc----c-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNP----T-----------YMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +...-..|..+++.|+|..|...|++++..=+    .           -..++.+++.|+.++++|.+|+....++|+++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            35567789999999999999999999887522    1           13478999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796          138 PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       138 p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                      |+|..+++..|+++..     +++|+.|+..|++++...|.+
T Consensus       288 ~~N~KALyRrG~A~l~-----~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLA-----LGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             CCchhHHHHHHHHHHh-----hccHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999     999999999999996444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.12  E-value=1.9e-09  Score=69.70  Aligned_cols=104  Identities=20%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh---hhccHHHHHHHHH
Q 044796           21 KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL---KLGKFEESIKECT   97 (186)
Q Consensus        21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~   97 (186)
                      -|+.|.+.++.....+|.+.+.+..-|                          .++..++....   ...-+++|+.-|+
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG--------------------------~ALLELAqfk~g~es~~miedAisK~e   59 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWG--------------------------GALLELAQFKQGPESKKMIEDAISKFE   59 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHH--------------------------HHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHH--------------------------HHHHHHHhccCcchHHHHHHHHHHHHH
Confidence            378899999999999999766554443                          33333433321   2235789999999


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           98 KALELNPTYMKALIRRAEAHEKLEH-----------FEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        98 ~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      +|+.++|+...+++.+|.++..++.           |++|..+|++|...+|++...+..|..+
T Consensus        60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999999999999999988874           7889999999999999998777766643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.09  E-value=6.5e-09  Score=79.18  Aligned_cols=164  Identities=18%  Similarity=0.140  Sum_probs=119.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHh----hCCCcchhHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKE----VAPAPEMAELRSICHSN   78 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   78 (186)
                      ++++.+.-...++...|++++|+.++.+....-++...+.-..|.++ ..+..+++...    +..+|.+.    ..+..
T Consensus         2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----~Yy~~   77 (517)
T PF12569_consen    2 EHSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----DYYRG   77 (517)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHH
Confidence            56788888999999999999999999999988888888888888776 55555555444    45566554    44444


Q ss_pred             HHHHHhh-----hccHHHHHHHHHHHHhcCcc------------------------------------------------
Q 044796           79 RGICFLK-----LGKFEESIKECTKALELNPT------------------------------------------------  105 (186)
Q Consensus        79 ~a~~~~~-----~~~~~~A~~~~~~al~~~p~------------------------------------------------  105 (186)
                      +..+...     ..+.+.-...|+......|.                                                
T Consensus        78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~  157 (517)
T PF12569_consen   78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPE  157 (517)
T ss_pred             HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChh
Confidence            4433311     11222333333332222211                                                


Q ss_pred             ---------------------------------c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796          106 ---------------------------------Y--MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus       106 ---------------------------------~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                                                       .  ..+++.+|..+...|++++|+.+++++|+..|+.++.+...|++
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari  237 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI  237 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                                             0  13567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcccCC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      +..     .|++.+|.+..+.+...+
T Consensus       238 lKh-----~G~~~~Aa~~~~~Ar~LD  258 (517)
T PF12569_consen  238 LKH-----AGDLKEAAEAMDEARELD  258 (517)
T ss_pred             HHH-----CCCHHHHHHHHHHHHhCC
Confidence            999     999999999998875443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=1e-08  Score=75.46  Aligned_cols=114  Identities=22%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      -.+-..+.+++..++..+|.+.+++++.++|.                                 .+..+.++|.++++.
T Consensus       341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---------------------------------~~~l~~~~a~all~~  387 (484)
T COG4783         341 YYLELAGDILLEANKAKEAIERLKKALALDPN---------------------------------SPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------------------------------ccHHHHHHHHHHHhc
Confidence            34556788999999999999999999999999                                 238899999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      |++.+|+..++..+..+|+++..|..+|.+|..+|+..+|...+.....+...-..+...+..+...
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998888766666655544443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.03  E-value=5.5e-10  Score=82.02  Aligned_cols=69  Identities=10%  Similarity=0.044  Sum_probs=64.6

Q ss_pred             cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          102 LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA---KRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       102 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .+|+++.+++++|.+++.+|+|++|+..|+++++++|++.++   |++++.++..     +|++++|+.++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-----LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-----REEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh
Confidence            588999999999999999999999999999999999999865   9999999998     99999999999998764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.02  E-value=5.5e-09  Score=79.15  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=64.5

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHH----hhCCCcchhHHHHHHHHHHHHHH
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKK----EVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      |--+|..+...++|++|++||+.|+...|+|.+.+.-++.+. +.++.+....    .+...|...    ..|...|..+
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r----a~w~~~Avs~  153 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR----ASWIGFAVAQ  153 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH----HHHHHHHHHH
Confidence            455777788888888889999888888888888888887765 4455544333    334444333    7788888888


Q ss_pred             hhhccHHHHHHHHHHHHhc
Q 044796           84 LKLGKFEESIKECTKALEL  102 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~  102 (186)
                      .-.|++..|....+...+.
T Consensus       154 ~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen  154 HLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888888887776665544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.02  E-value=8.2e-10  Score=71.35  Aligned_cols=96  Identities=25%  Similarity=0.332  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF----------EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      -|+.|.+.++.....+|.+++.+++-|.++..+.++          ++|+.-|++|+.++|+...++..+|.++..+|-.
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999999998887654          5688889999999999999999999999998864


Q ss_pred             ------hhccccccchhhhhcc--cCCCCccccc
Q 044796          158 ------ILGRFGMSTDNFKAVK--DPNTGAYSIS  183 (186)
Q Consensus       158 ------~~~~~~~A~~~~~~~~--~~~~~~~~~~  183 (186)
                            ...-|+.|..+|+++.  +|++..|...
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                  2345889999999884  7777666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=2.3e-09  Score=70.48  Aligned_cols=99  Identities=23%  Similarity=0.361  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .-+-.-|.-++..|+|++|...|..||.+-|..+     ..+.+.|.++.+++..+.|+....++++++|.+..+....+
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            5566778999999999999999999999988653     47888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .++..     +.+|++|++.|++++..+|
T Consensus       176 eayek-----~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  176 EAYEK-----MEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHh-----hhhHHHHHHHHHHHHHhCc
Confidence            99988     8999999999999864443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.3e-08  Score=76.47  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=120.6

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +.++.--+.+...|+|++|.+...+.+...|++.++.+--.... ..+..+++.+.+...+...... ...+..|.|+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence            45666667788899999999999999999999998877655444 5566677776666555322111 223789999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------------------------
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN-------------------------  140 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------  140 (186)
                      ++..++|+..++   ..++.+.......|.+++++|+|++|++.|+..++.+.++                         
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            999999999998   5677778889999999999999999999999997654332                         


Q ss_pred             ------hHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          141 ------NQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       141 ------~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                            .+..++.+.++..     .|+|.+|++.++.+
T Consensus       169 ~v~e~syel~yN~Ac~~i~-----~gky~qA~elL~kA  201 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIE-----NGKYNQAIELLEKA  201 (652)
T ss_pred             CCCcchHHHHHHHHHHHHh-----cccHHHHHHHHHHH
Confidence                  2334455545555     88899999998877

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.01  E-value=3.8e-09  Score=75.21  Aligned_cols=136  Identities=21%  Similarity=0.178  Sum_probs=96.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.+...|+.+...|+|++|..+|.++....-...                           .....+..+...+.++.
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~---------------------------~~~~Aa~~~~~Aa~~~k   86 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG---------------------------DKFEAAKAYEEAANCYK   86 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHH
Confidence            356666777888889999999999999877654311                           11113467777777776


Q ss_pred             hhccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSNN------QAKRTILRKL  151 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~  151 (186)
                      +. ++++|+.++++++.+.-      .-...+..+|.++... |++++|+..|++|+++.....      .+...++.++
T Consensus        87 ~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen   87 KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            55 99999999999998732      2256888999999999 999999999999998744332      2334444444


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .++|++|++.|+++.
T Consensus       166 ~~-----l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  166 AR-----LGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HH-----TT-HHHHHHHHHHHH
T ss_pred             HH-----hCCHHHHHHHHHHHH
Confidence            44     899999999998774

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.99  E-value=1.5e-08  Score=72.09  Aligned_cols=153  Identities=21%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc-
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG-   87 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-   87 (186)
                      ...|.++...|++++|++.+.+.     .+.+.......++ ..+..+.+.+.+........+..-.....+++.+..| 
T Consensus       106 ~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  106 LLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc
Confidence            44455666666666666666543     2233332222222 3333333333332222222222222333333444444 


Q ss_pred             -cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc-cc
Q 044796           88 -KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG-MS  165 (186)
Q Consensus        88 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~-~A  165 (186)
                       ++.+|...|+......|..+..+..++.|+..+|++++|...+.+++..+|+++.+..++..+...     .|+.. .+
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-----~gk~~~~~  255 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-----LGKPTEAA  255 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-----TT-TCHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----hCCChhHH
Confidence             578888888887777677788888888888888888888888888888888888888888766666     55553 23


Q ss_pred             chhhhhc
Q 044796          166 TDNFKAV  172 (186)
Q Consensus       166 ~~~~~~~  172 (186)
                      .+++.+.
T Consensus       256 ~~~l~qL  262 (290)
T PF04733_consen  256 ERYLSQL  262 (290)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            3344444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=3.2e-08  Score=70.62  Aligned_cols=145  Identities=21%  Similarity=0.168  Sum_probs=111.8

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchh-------------------
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMA-------------------   69 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------   69 (186)
                      .=+|.|+++.|+|++|...|.-+...+.-+.+.+..++.+. ..+...++.......+...                   
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            34699999999999999999999987777778888888665 3344333332222222111                   


Q ss_pred             -------HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           70 -------ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        70 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                             .+...-...+|.++...-.|++||..|++.+.-+|........++.||+++.-|+-+.+.+.-.++..|+++.
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti  220 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI  220 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence                   1112334556777777779999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 044796          143 AKRTILRKLKEM  154 (186)
Q Consensus       143 ~~~~l~~~~~~~  154 (186)
                      +....+..+.++
T Consensus       221 A~NLkacn~fRl  232 (557)
T KOG3785|consen  221 AKNLKACNLFRL  232 (557)
T ss_pred             HHHHHHHHHhhh
Confidence            988877655543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.99  E-value=5.2e-10  Score=79.17  Aligned_cols=98  Identities=23%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      .-..|..|+++|.|++||.||.+++..+|.++..+.+++.+|+++..|..|...+..++.++.....++...+.+-..  
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~--  177 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES--  177 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH--
Confidence            467899999999999999999999999999999999999999999999999999999999999988898888877777  


Q ss_pred             HHhhccccccchhhhhcccCCCC
Q 044796          156 NSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                         +|...+|.+.++.++..+|.
T Consensus       178 ---Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  178 ---LGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             ---HhhHHHHHHhHHHHHhhCcc
Confidence               88888999999988644443

>PRK11906 transcriptional regulator; Provisional

Probab=98.98  E-value=3.5e-08  Score=72.85  Aligned_cols=82  Identities=2%  Similarity=-0.221  Sum_probs=49.3

Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      ....+|....++|++++|.++.++..+|.++...|+++.|...|++|+.++|+.+.+++..|.++..     .|+.++|+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-----~G~~~~a~  392 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-----NEKIEEAR  392 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-----cCCHHHHH
Confidence            3445556666666666666666666666666666666666666666666666666666666644444     56666666


Q ss_pred             hhhhhcc
Q 044796          167 DNFKAVK  173 (186)
Q Consensus       167 ~~~~~~~  173 (186)
                      +.+++++
T Consensus       393 ~~i~~al  399 (458)
T PRK11906        393 ICIDKSL  399 (458)
T ss_pred             HHHHHHh
Confidence            6665554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.98  E-value=3e-08  Score=70.64  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=91.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..+...|.++.+. ++++|+.+|++++.+.-...                           ....-+.++..+|.++.
T Consensus        74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G---------------------------~~~~aA~~~~~lA~~ye  125 (282)
T PF14938_consen   74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG---------------------------RFSQAAKCLKELAEIYE  125 (282)
T ss_dssp             HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT----------------------------HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC---------------------------cHHHHHHHHHHHHHHHH
Confidence            345555555555444 77788888888777643311                           11123478899999999


Q ss_pred             hh-ccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--HHH
Q 044796           85 KL-GKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK--EMG  155 (186)
Q Consensus        85 ~~-~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~  155 (186)
                      .. |++++|+.+|++|+.....      ....+..+|.++..+|+|++|+..|+++....-+++.........+.  -++
T Consensus       126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~  205 (282)
T PF14938_consen  126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC  205 (282)
T ss_dssp             CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            99 9999999999999987322      24577889999999999999999999998865443322222221111  122


Q ss_pred             HHhhccccccchhhhhcc
Q 044796          156 NSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~  173 (186)
                      ....|+...|.+.++...
T Consensus       206 ~L~~~D~v~A~~~~~~~~  223 (282)
T PF14938_consen  206 HLAMGDYVAARKALERYC  223 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHG
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            223677777777777664

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.97  E-value=7e-09  Score=71.40  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---NQAKRTILR  149 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~  149 (186)
                      .+..|.-+...|+|..|...|..-++..|+.   +.++++||.+++.+|++++|...|..+.+-.|++   +++...+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999976   6899999999999999999999999999988876   577888998


Q ss_pred             HHHHHHHHhhccccccchhhhhccc
Q 044796          150 KLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       150 ~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      ++..     +++.++|...|..++.
T Consensus       224 ~~~~-----l~~~d~A~atl~qv~k  243 (262)
T COG1729         224 SLGR-----LGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHH-----hcCHHHHHHHHHHHHH
Confidence            8888     8999999999988763

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.97  E-value=9.8e-08  Score=66.39  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..+.+.+|.++++.+++++|+..+++.++.+|+++                          ...    .+++.+|.++..
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~--------------------------~~~----~a~Y~~g~~~~~  118 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP--------------------------NID----YVLYMRGLTNMA  118 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC--------------------------chH----HHHHHHHHhhhh
Confidence            34578899999999999999999999999999943                          332    777777776533


Q ss_pred             hc------------------cHHHHHHHHHHHHhcCcccHH-----------------HHHHHHHHHHHhcCHHHHHHHH
Q 044796           86 LG------------------KFEESIKECTKALELNPTYMK-----------------ALIRRAEAHEKLEHFEEAIADM  130 (186)
Q Consensus        86 ~~------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~  130 (186)
                      .+                  ...+|+..+++.++..|+...                 --+..|..|.+.|.+..|+.-+
T Consensus       119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~  198 (243)
T PRK10866        119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV  198 (243)
T ss_pred             cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            32                  245788999999999997631                 1234577799999999999999


Q ss_pred             HHHHhcCCCCh---HHHHHHHHHHHHHHHHhhccccccchhhhh
Q 044796          131 KKILEFDPSNN---QAKRTILRKLKEMGNSILGRFGMSTDNFKA  171 (186)
Q Consensus       131 ~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~  171 (186)
                      +.+++.-|+.+   ++...+..++..     +|..++|......
T Consensus       199 ~~v~~~Yp~t~~~~eal~~l~~ay~~-----lg~~~~a~~~~~~  237 (243)
T PRK10866        199 EQMLRDYPDTQATRDALPLMENAYRQ-----LQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHH-----cCChHHHHHHHHH
Confidence            99999988764   566677777777     7777777665543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.97  E-value=1.3e-08  Score=74.86  Aligned_cols=98  Identities=21%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ++....++.+++..++-.+|+..+.+++...|.+                                 +..+...+..+..
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------------------------~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD---------------------------------SELLNLQAEFLLS  246 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHh
Confidence            4556678889999999999999999999999982                                 3788889999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      .++++.|+...+++++..|++...|+.++.+|..+|+++.|+..++.+=..
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            999999999999999999999999999999999999999999888755433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.96  E-value=8.7e-08  Score=64.99  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=91.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ..++.+.+|.+++..|++++|+..|++.++..|+++                          ...    .+++.+|.++.
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~--------------------------~~~----~A~Y~~g~~~~   90 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP--------------------------KAD----YALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--------------------------THH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--------------------------chh----hHHHHHHHHHH
Confidence            457789999999999999999999999999999943                          222    66777777655


Q ss_pred             hh-----------ccHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           85 KL-----------GKFEESIKECTKALELNPTYM-----------------KALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        85 ~~-----------~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      .+           +...+|+..|+..+...|+.+                 .--+..|..|.+.|.+..|+..++.+++.
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            43           345699999999999999863                 12345688899999999999999999999


Q ss_pred             CCCChH---HHHHHHHHHHHHH
Q 044796          137 DPSNNQ---AKRTILRKLKEMG  155 (186)
Q Consensus       137 ~p~~~~---~~~~l~~~~~~~~  155 (186)
                      -|+.+.   ++..+..++..+|
T Consensus       171 yp~t~~~~~al~~l~~~y~~l~  192 (203)
T PF13525_consen  171 YPDTPAAEEALARLAEAYYKLG  192 (203)
T ss_dssp             STTSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCchHHHHHHHHHHHHHHhC
Confidence            999864   4566666666633

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.94  E-value=6.1e-09  Score=82.40  Aligned_cols=149  Identities=15%  Similarity=0.177  Sum_probs=125.2

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhhhhc-Cc----hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEG-QS----ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI   93 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   93 (186)
                      .++...|...|-++++++|....++..+|.++..- +-    ....+++...+.    ...++-..+.++....+++.|.
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat----daeaaaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT----DAEAAAASADTYAEESTWEEAF  546 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhccccHHHHH
Confidence            44588999999999999999999999999887432 22    334445555554    4488889999999999999999


Q ss_pred             HHHHHHHhcCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhh
Q 044796           94 KECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKA  171 (186)
Q Consensus        94 ~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~  171 (186)
                      ..+-.+-+..|-.  ...|..+|..+...+++.+|+..|+.+++.+|.+...|..+|.+|..     .|++..|++.|.+
T Consensus       547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-----sGry~~AlKvF~k  621 (1238)
T KOG1127|consen  547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-----SGRYSHALKVFTK  621 (1238)
T ss_pred             HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-----cCceehHHHhhhh
Confidence            9988877777744  45677799999999999999999999999999999999999999999     9999999999988


Q ss_pred             cc--cCC
Q 044796          172 VK--DPN  176 (186)
Q Consensus       172 ~~--~~~  176 (186)
                      +.  +|.
T Consensus       622 As~LrP~  628 (1238)
T KOG1127|consen  622 ASLLRPL  628 (1238)
T ss_pred             hHhcCcH
Confidence            84  553

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.9e-09  Score=71.66  Aligned_cols=95  Identities=20%  Similarity=0.269  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .-.-..|..++....|..|+.+|.+++.++|..+..+.+.+.|++++.+++.+....+++++++|+...+++.+|.++..
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            34456788888889999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhhccccccchhhhhcc
Q 044796          154 MGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~  173 (186)
                           ...|++||..+.++.
T Consensus        91 -----s~~~~eaI~~Lqra~  105 (284)
T KOG4642|consen   91 -----SKGYDEAIKVLQRAY  105 (284)
T ss_pred             -----hccccHHHHHHHHHH
Confidence                 999999999998883

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=6e-08  Score=77.69  Aligned_cols=160  Identities=18%  Similarity=0.173  Sum_probs=120.6

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHH-HHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRG-ICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~   85 (186)
                      .+++.+|.||-+.|++++|...|+++++.+|+++.+...+|-.+...+.+.+               ..++..+ ..+..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA---------------~~m~~KAV~~~i~  181 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKA---------------ITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHH---------------HHHHHHHHHHHHh
Confidence            5889999999999999999999999999999999999888876643322221               2222222 44667


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHH--------HHH------------HHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALI--------RRA------------EAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~--------~lg------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .++|.++...+.+.+..+|++.+.+.        .+|            .+|...+++++++..++.+++++|+|..+..
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~  261 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE  261 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence            78999999999999999998765422        224            6788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---------------hhccccccchhhhhcccCCCCccc
Q 044796          146 TILRKLKEMGNS---------------ILGRFGMSTDNFKAVKDPNTGAYS  181 (186)
Q Consensus       146 ~l~~~~~~~~~~---------------~~~~~~~A~~~~~~~~~~~~~~~~  181 (186)
                      .++.++...-..               .-..+..|+..|++-+..++++|-
T Consensus       262 ~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv  312 (906)
T PRK14720        262 ELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFV  312 (906)
T ss_pred             HHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEE
Confidence            999988632110               012346677777776655555553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.89  E-value=1.2e-07  Score=61.85  Aligned_cols=125  Identities=17%  Similarity=0.216  Sum_probs=102.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhc-cCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRV-ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ....+.+|+.+...|++.+|..+|++++.- ..+                                 ++.++..+++..+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---------------------------------d~a~lLglA~Aqf  135 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---------------------------------DAAMLLGLAQAQF  135 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---------------------------------CHHHHHHHHHHHH
Confidence            345678899999999999999999998863 333                                 2377888999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           85 KLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      ..+++..|...+++..+.+|.  .|..+..+|.++..+|.+.+|...|+.++...|+ +.+....+..+..     +|+.
T Consensus       136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~-----qgr~  209 (251)
T COG4700         136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK-----QGRL  209 (251)
T ss_pred             hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH-----hcch
Confidence            999999999999999998875  4778888999999999999999999999999887 6677778888888     5555


Q ss_pred             cccchhh
Q 044796          163 GMSTDNF  169 (186)
Q Consensus       163 ~~A~~~~  169 (186)
                      +++...+
T Consensus       210 ~ea~aq~  216 (251)
T COG4700         210 REANAQY  216 (251)
T ss_pred             hHHHHHH
Confidence            5554443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.88  E-value=6.3e-09  Score=52.49  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      .++..+|.++..+|++++|++.|+++++.+|+++.+|..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666666777777777777777777777776666666553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.87  E-value=4.6e-08  Score=61.36  Aligned_cols=101  Identities=20%  Similarity=0.123  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH---HHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ---AKRT  146 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  146 (186)
                      +..++..|...++.|+|++|+..|+.+....|..   ..+.+.+|.+++..|++++|+..+++.++++|.++.   +++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4788999999999999999999999999988764   678999999999999999999999999999999864   4666


Q ss_pred             HHHHHHHHHHH----------hhccccccchhhhhcc
Q 044796          147 ILRKLKEMGNS----------ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       147 l~~~~~~~~~~----------~~~~~~~A~~~~~~~~  173 (186)
                      .|.+.......          -.+....|...|+..+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv  126 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLV  126 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence            66555543320          0222456666676665

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1.7e-08  Score=70.41  Aligned_cols=158  Identities=11%  Similarity=-0.001  Sum_probs=88.9

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchh-hhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPE-AKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..+..+|.||+...+|..|.+||++.-.+.|.........+.. +...-..++...+............+....+.+...
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs  124 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS  124 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence            3467789999999999999999999999999876544433322 233333344433333333333333444444444445


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS  165 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A  165 (186)
                      .+++..+....++.-.  .+......+.|.+.++.|+++.|++-|+.+++...-++..-++++.+...     .+++..|
T Consensus       125 e~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-----~~qyasA  197 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-----SRQYASA  197 (459)
T ss_pred             cccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-----hhhHHHH
Confidence            5555544333332211  13344555566666666666666666666666666555555555544444     5555555


Q ss_pred             chhhhh
Q 044796          166 TDNFKA  171 (186)
Q Consensus       166 ~~~~~~  171 (186)
                      .++-..
T Consensus       198 Lk~iSE  203 (459)
T KOG4340|consen  198 LKHISE  203 (459)
T ss_pred             HHHHHH
Confidence            555433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.81  E-value=1.2e-08  Score=51.41  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE  115 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  115 (186)
                      .++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            678999999999999999999999999999999999999885

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.79  E-value=5.7e-08  Score=59.65  Aligned_cols=96  Identities=24%  Similarity=0.228  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----HHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN----QAKRTILR  149 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~  149 (186)
                      ..+-..|......|+.+.|++.|.+++.+-|..+.+|.+.+.++..+|+.++|++.+++++++...-.    .++...|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            45566788888999999999999999999999999999999999999999999999999999976543    23455555


Q ss_pred             HHHHHHHHhhccccccchhhhhccc
Q 044796          150 KLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       150 ~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      ++..     +|+-+.|...|+.+-.
T Consensus       124 lyRl-----~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  124 LYRL-----LGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHH-----hCchHHHHHhHHHHHH
Confidence            5555     8888888888877643

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.79  E-value=8e-08  Score=73.61  Aligned_cols=109  Identities=8%  Similarity=0.075  Sum_probs=85.6

Q ss_pred             HHhhCCCcchhHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHH
Q 044796           59 KKEVAPAPEMAELRSICHSNRGICFLKL--------GKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIA  128 (186)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~  128 (186)
                      .+++...|...    .++..++.++...        .+...+.....+++..  +|.++.++.-+|......|++++|..
T Consensus       366 e~Ai~ldP~~a----~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~  441 (517)
T PRK10153        366 EEILKSEPDFT----YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQ  441 (517)
T ss_pred             HHHHHhCCCcH----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence            45555566554    6666666665443        2345667777776664  77788899999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .+++++.++| +..++..+|.++..     .|++++|++.|+++...+|
T Consensus       442 ~l~rAl~L~p-s~~a~~~lG~~~~~-----~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        442 AINKAIDLEM-SWLNYVLLGKVYEL-----KGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCC
Confidence            9999999999 47899999998888     9999999999999954433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.78  E-value=4.6e-09  Score=74.13  Aligned_cols=104  Identities=27%  Similarity=0.452  Sum_probs=95.1

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+.+......+...+..|++++|+++|..+|.++|.                                 .+.++..++.+
T Consensus       111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~---------------------------------~a~l~~kr~sv  157 (377)
T KOG1308|consen  111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP---------------------------------LAILYAKRASV  157 (377)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc---------------------------------hhhhcccccce
Confidence            456667777888899999999999999999999999                                 44788899999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      +.++++...|+..|..+++++|+....+-..|.+...+|++++|...+..+.+++-+
T Consensus       158 ~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  158 FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999988643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.78  E-value=9.7e-07  Score=60.56  Aligned_cols=107  Identities=20%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      -+..|++.|...++.|+|++|++.|+.+....|-.                          +-    ...+...++.++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--------------------------~~----~~qa~l~l~yA~Y   82 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--------------------------PY----SEQAQLDLAYAYY   82 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------------------cc----cHHHHHHHHHHHH
Confidence            46789999999999999999999999999999983                          22    2388899999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCCCCh
Q 044796           85 KLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLE--------HFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~  141 (186)
                      +.+++++|+...++-+...|+++   .+++..|.+++..=        -..+|+..|+..+..-|++.
T Consensus        83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105          83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            99999999999999999988775   47888888865433        23578999999999999863

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.75  E-value=9.8e-09  Score=48.55  Aligned_cols=33  Identities=36%  Similarity=0.364  Sum_probs=28.1

Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHH
Q 044796           95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAI  127 (186)
Q Consensus        95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  127 (186)
                      +|+++++++|+++.+|+++|.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            367888888888888888888888888888875

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.75  E-value=8e-07  Score=64.16  Aligned_cols=159  Identities=14%  Similarity=0.083  Sum_probs=113.4

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh------------------------------------
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK------------------------------------   51 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------------------------   51 (186)
                      ....++......|+++.|.....++++..|.++.+......++.                                    
T Consensus       155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g  234 (400)
T COG3071         155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG  234 (400)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            35566778888899999999999999999998876543321110                                    


Q ss_pred             -------hcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----------------------
Q 044796           52 -------EGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL----------------------  102 (186)
Q Consensus        52 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------------  102 (186)
                             .++.+.....++..|....-++......+.-+...|+.++|......+++.                      
T Consensus       235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~  314 (400)
T COG3071         235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLI  314 (400)
T ss_pred             HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHH
Confidence                   001112122333334333334566677777788888888887777776654                      


Q ss_pred             ---------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          103 ---------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       103 ---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                               .|++|..+..+|..+.+.+.+.+|..+|+.+++..|+ ...+..++.++..     +|+...|...++.+
T Consensus       315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~-----~g~~~~A~~~r~e~  387 (400)
T COG3071         315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQ-----LGEPEEAEQVRREA  387 (400)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH-----cCChHHHHHHHHHH
Confidence                     4667888999999999999999999999999998887 4568888988888     77777777777655

>PLN03077 Protein ECB2; Provisional

Probab=98.74  E-value=2e-07  Score=76.14  Aligned_cols=168  Identities=14%  Similarity=0.034  Sum_probs=123.8

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHh--ccCCChhhhhccchhhhhcCchhHHHhhCCCcchh--HHHHHHHHHHHHH
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALR--VASVPERAESASAPEAKEGQSASEKKEVAPAPEMA--ELRSICHSNRGIC   82 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~   82 (186)
                      ..|..+...+...|+.++|+..|++..+  ..|+.......+..+...+..++....+.......  ..+...|..+...
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~  634 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL  634 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            3477778888999999999999998876  45665554444444445555555444433222111  1133688889999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +.+.|++++|...+++. ...|+ +..|..+-.++...|+.+.+....++.++++|++...+..++.++..     .|++
T Consensus       635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-----~g~~  707 (857)
T PLN03077        635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-----AGKW  707 (857)
T ss_pred             HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-----CCCh
Confidence            99999999999999875 45665 55666665567788999999999999999999999999999999988     9999


Q ss_pred             cccchhhhhc----ccCCCCccc
Q 044796          163 GMSTDNFKAV----KDPNTGAYS  181 (186)
Q Consensus       163 ~~A~~~~~~~----~~~~~~~~~  181 (186)
                      ++|.+..+..    +.++++.-+
T Consensus       708 ~~a~~vr~~M~~~g~~k~~g~s~  730 (857)
T PLN03077        708 DEVARVRKTMRENGLTVDPGCSW  730 (857)
T ss_pred             HHHHHHHHHHHHcCCCCCCCccE
Confidence            9999988655    345555433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=7.2e-07  Score=67.41  Aligned_cols=160  Identities=14%  Similarity=0.121  Sum_probs=98.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..++...-.++++.++|++|+...+.-......+...+.-.-+.+..+..+.+...+.....   ....+.-..|+++++
T Consensus        46 ~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYr  122 (652)
T KOG2376|consen   46 EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYR  122 (652)
T ss_pred             HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc---cchHHHHHHHHHHHH
Confidence            34555555666666777776633332221111111111111122344555555555442211   123577888999999


Q ss_pred             hccHHHHHHHHHHHHhcCcc-------------------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPT-------------------------------YMKALIRRAEAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (186)
                      +|+|++|+..|+..++.+.+                               ..+.+++.+.++...|+|.+|++.+++++
T Consensus       123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~  202 (652)
T KOG2376|consen  123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL  202 (652)
T ss_pred             HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            99999999999998654322                               34578899999999999999999999994


Q ss_pred             hc--------CCCChH-------HHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          135 EF--------DPSNNQ-------AKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       135 ~~--------~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .+        +.+..+       +...++.++..     +|+..+|...|...+
T Consensus       203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-----~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-----QGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHH
Confidence            43        122122       33444444444     999999999887765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.70  E-value=1.4e-07  Score=75.38  Aligned_cols=159  Identities=13%  Similarity=0.044  Sum_probs=114.8

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhc--cCCChhhhhccchhhhhcCchhHHHhhCCCcchhH--HHHHHHHHHHHHH
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRV--ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAE--LRSICHSNRGICF   83 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~   83 (186)
                      .|..+...+.+.|+.++|+..|++..+.  .|+.......+..+...+..+.+...+.......+  .+...|..+...+
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            4566777788888888888888887663  44433333333333344544444443322211111  1235678888999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      .+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.+++.|++...+..+..++..     .|+++
T Consensus       473 ~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-----~G~~~  545 (697)
T PLN03081        473 GREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-----SGRQA  545 (697)
T ss_pred             HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-----CCCHH
Confidence            9999999999988764 3345 355688888888999999999999999999999999999999998888     99999


Q ss_pred             ccchhhhhcc
Q 044796          164 MSTDNFKAVK  173 (186)
Q Consensus       164 ~A~~~~~~~~  173 (186)
                      +|.+.++...
T Consensus       546 ~A~~v~~~m~  555 (697)
T PLN03081        546 EAAKVVETLK  555 (697)
T ss_pred             HHHHHHHHHH
Confidence            9999997663

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.69  E-value=5.1e-08  Score=46.21  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=6.8e-08  Score=64.50  Aligned_cols=97  Identities=22%  Similarity=0.268  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      .++..++.+|..|-..|-+.-|...|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|.+.-++.+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999998888865


Q ss_pred             HHHHHHHhhccccccchhhhhc
Q 044796          151 LKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +.-     -|++..|.+.+.+-
T Consensus       143 ~YY-----~gR~~LAq~d~~~f  159 (297)
T COG4785         143 LYY-----GGRYKLAQDDLLAF  159 (297)
T ss_pred             eee-----cCchHhhHHHHHHH
Confidence            555     78888887776544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=4.4e-07  Score=62.44  Aligned_cols=135  Identities=15%  Similarity=0.154  Sum_probs=107.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhcc-CCChhhhhccchhh-hhcCchhHHHhhCCC----cc--hhHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVA-SVPERAESASAPEA-KEGQSASEKKEVAPA----PE--MAELRSICHS   77 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~--~~~~~~~~~~   77 (186)
                      ....+.+..++...|.|.-++..+.+.++.+ |..+.....+|.+. +.++.+.+.......    ..  ..........
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            3445667788889999999999999999998 55777777788765 556665554433211    10  1111235667


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      +.+.++...+++..|...+.+.+..+|.++.+..+.|.|+..+|+..+|++..+.+++..|..
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            788899999999999999999999999999999999999999999999999999999999974

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.65  E-value=1.1e-07  Score=45.00  Aligned_cols=33  Identities=39%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      .+++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.65  E-value=7.6e-08  Score=45.59  Aligned_cols=33  Identities=33%  Similarity=0.592  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY  106 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  106 (186)
                      .+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.65  E-value=1.2e-07  Score=67.62  Aligned_cols=161  Identities=12%  Similarity=0.067  Sum_probs=110.5

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCC--Chhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASV--PERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ...++..+...++-+.++..++..+.....  ++......|.+. ..++.+++.+.+....     +..+......++..
T Consensus        69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~lE~~al~Vqi~L~  143 (290)
T PF04733_consen   69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----SLELLALAVQILLK  143 (290)
T ss_dssp             HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----cccHHHHHHHHHHH
Confidence            344444444445667777777665543322  222222333333 4455566666555442     33666677889999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE--HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      +++++.|.+.++..-+++++..-.....|++....|  .+.+|.-.|+...+..|.++.....++.+...     +|+++
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-----~~~~~  218 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-----LGHYE  218 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-----CT-HH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-----hCCHH
Confidence            999999999999999998888777777777777767  58999999999988888899999999988877     99999


Q ss_pred             ccchhhhhcccCCCCc
Q 044796          164 MSTDNFKAVKDPNTGA  179 (186)
Q Consensus       164 ~A~~~~~~~~~~~~~~  179 (186)
                      +|.+.++.+++.++..
T Consensus       219 eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  219 EAEELLEEALEKDPND  234 (290)
T ss_dssp             HHHHHHHHHCCC-CCH
T ss_pred             HHHHHHHHHHHhccCC
Confidence            9999999887555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.63  E-value=1.2e-06  Score=70.11  Aligned_cols=161  Identities=15%  Similarity=0.094  Sum_probs=95.2

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-hh-----------------------------------hccchhh-
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-AE-----------------------------------SASAPEA-   50 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~-----------------------------------~~~~~~~-   50 (186)
                      .|..+...+.+.|++++|+..|++.++..+.... .+                                   ..+...+ 
T Consensus       191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~  270 (697)
T PLN03081        191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS  270 (697)
T ss_pred             eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence            3666777888899999999999998765432211 11                                   0011111 


Q ss_pred             hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHH
Q 044796           51 KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIA  128 (186)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~  128 (186)
                      +.+..+.+...+...+.   .+...|..+...|.+.|++++|+..|++..+.  .| +...+..+..++...|++++|.+
T Consensus       271 k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~  346 (697)
T PLN03081        271 KCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQ  346 (697)
T ss_pred             HCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHH
Confidence            22333444444433322   13467777778888888888888888776653  33 33455566666666666666666


Q ss_pred             HHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          129 DMKKILEFD-PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       129 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .+..+++.. +.+..++..+...+.+     .|++++|.+.|+....++.
T Consensus       347 i~~~m~~~g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~~m~~~d~  391 (697)
T PLN03081        347 AHAGLIRTGFPLDIVANTALVDLYSK-----WGRMEDARNVFDRMPRKNL  391 (697)
T ss_pred             HHHHHHHhCCCCCeeehHHHHHHHHH-----CCCHHHHHHHHHhCCCCCe
Confidence            666666654 3344455555555555     5666666666665554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.58  E-value=1.1e-06  Score=63.50  Aligned_cols=128  Identities=20%  Similarity=0.140  Sum_probs=98.9

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ++.....+..+...|+.++|.+...++++..-+..  ...+......++.....+..+......|.++..+..+|..+++
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k  340 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK  340 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            56667788889999999999999999999766644  3333333344444444444333333333445999999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      .+.|.+|-.+++.++...|. ...+..+|.++..+|+...|.+.++.++.+
T Consensus       341 ~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         341 NKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999998874 567888999999999999999999999854

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.58  E-value=2.2e-07  Score=43.94  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP   39 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   39 (186)
                      |+.++.+|.+++..|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999984

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.57  E-value=3.8e-06  Score=55.07  Aligned_cols=97  Identities=16%  Similarity=0.322  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRK  150 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~  150 (186)
                      .-.+.+|......|++.+|...|++++. +..+++..+..++.+.+..+++..|...+++..+.+|.  .+.....++++
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~  169 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART  169 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence            4557789999999999999999999995 67788999999999999999999999999999999986  56778888888


Q ss_pred             HHHHHHHhhccccccchhhhhcccC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +..     .|++.+|...|+.+++-
T Consensus       170 laa-----~g~~a~Aesafe~a~~~  189 (251)
T COG4700         170 LAA-----QGKYADAESAFEVAISY  189 (251)
T ss_pred             HHh-----cCCchhHHHHHHHHHHh
Confidence            888     99999999999888643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.56  E-value=1.4e-05  Score=51.27  Aligned_cols=119  Identities=19%  Similarity=0.110  Sum_probs=82.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhcc-chhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESAS-APEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .-+.+...|......++...++..+.+++.+...+.-.-... .....         .   ..........+...++..+
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~---------~---r~~l~~~~~~~~~~l~~~~   72 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEP---------E---RERLRELYLDALERLAEAL   72 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHH---------H---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHH---------H---HHHHHHHHHHHHHHHHHHH
Confidence            345566667777888999999999999999875532111110 00000         0   0001111236677788888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ...|++++|+..+++++..+|.+..++..+-.++...|+..+|+..|+++..
T Consensus        73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998854

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.56  E-value=1.6e-06  Score=71.80  Aligned_cols=92  Identities=10%  Similarity=0.059  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTILRKL  151 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  151 (186)
                      .|..+...+.+.|++++|...++...+.. +.+...+..+..+|.+.|++++|...|++..+.  .| +..+|..+...+
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy  729 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITAL  729 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            33344444444444444444444444332 112334444444555555555555555544332  22 233444444444


Q ss_pred             HHHHHHhhccccccchhhhhc
Q 044796          152 KEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ..     .|++++|.+.|+..
T Consensus       730 ~k-----~G~~eeAlelf~eM  745 (1060)
T PLN03218        730 CE-----GNQLPKALEVLSEM  745 (1060)
T ss_pred             HH-----CCCHHHHHHHHHHH
Confidence            44     55555555555433

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.53  E-value=3.2e-06  Score=69.98  Aligned_cols=93  Identities=8%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTIL  148 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~  148 (186)
                      ...|..+...|.+.|++++|+..|++....  .| +...|..+...|.+.|++++|++.|.+....  .|+ ..++..+.
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL  761 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILL  761 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence            345666666666667777777776665442  33 3445666666666677777777777666543  233 33444444


Q ss_pred             HHHHHHHHHhhccccccchhhhhc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ..+..     .|+++.|...+..+
T Consensus       762 ~a~~k-----~G~le~A~~l~~~M  780 (1060)
T PLN03218        762 VASER-----KDDADVGLDLLSQA  780 (1060)
T ss_pred             HHHHH-----CCCHHHHHHHHHHH
Confidence            44444     66666666666555

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.52  E-value=2.3e-07  Score=67.63  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..++-++|+.|+-.|+|++|+..-+.-+.+.....+-                           .....++.++|.++
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---------------------------AaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---------------------------AAERRAHSNLGNCH  245 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---------------------------HHHHHhhcccchhh
Confidence            344566678888889999999998877777664432110                           00126677777777


Q ss_pred             hhhccHHHHHHHHHHHHhcC----c--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELN----P--TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS------NNQAKRTILRKL  151 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~  151 (186)
                      .-+|+|+.|+++|++.+.+.    .  .....-|.+|..|.-+.+++.|+.++.+=+.+..+      ...+.+.||.++
T Consensus       246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF  325 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            77777777777777766432    1  22445667777777777777777777776655322      223344445444


Q ss_pred             HHHHHHhhccccccchhhh
Q 044796          152 KEMGNSILGRFGMSTDNFK  170 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~  170 (186)
                      ..     +|..+.|..+.+
T Consensus       326 ~a-----lg~h~kAl~fae  339 (639)
T KOG1130|consen  326 NA-----LGEHRKALYFAE  339 (639)
T ss_pred             Hh-----hhhHHHHHHHHH
Confidence            44     444445544443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=8.9e-06  Score=56.11  Aligned_cols=139  Identities=16%  Similarity=0.176  Sum_probs=95.7

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh-
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK-   85 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-   85 (186)
                      .+..-|.++.+.|++++|++.......+.     +...-..+. +....+.+.+.++...+.+  ....+..+|..+.+ 
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~l  182 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLGENLE-----AAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKL  182 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHH
Confidence            34455688899999999999987743332     222222222 3333334444433222222  11233334444433 


Q ss_pred             ---hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           86 ---LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        86 ---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                         .+++.+|.-+|+..-+..|..+......+.|+..+|++++|...++.++..++++++++.++..+-..
T Consensus       183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~  253 (299)
T KOG3081|consen  183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH  253 (299)
T ss_pred             hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence               34688999999999987777888999999999999999999999999999999999999998876666

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.47  E-value=1.6e-07  Score=44.38  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccch
Q 044796          129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTD  167 (186)
Q Consensus       129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~  167 (186)
                      +|+++++++|+++.+|+++|.++..     .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-----~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-----QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-----CcCHHhhcC
Confidence            4789999999999999999999999     888888763

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.45  E-value=1.7e-06  Score=62.12  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh------ccchhh-hhcCchhHH----------HhhCCCcchhH
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES------ASAPEA-KEGQSASEK----------KEVAPAPEMAE   70 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~~~~~~-~~~~~~~~~----------~~~~~~~~~~~   70 (186)
                      ....+|+.+...+.|+++++.|+.|++....+.++..      .+|..+ ...+.+.+.          ..+........
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            4556788888899999999999999988766555443      333333 222221111          11222223334


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +...+++.++..+..+|+.-.|.++++++.++      .|.......-+|.+|...|+.+.|..-|++|...-
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            45566777778888888888888888777765      23345566667788888888888887777777543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.43  E-value=2e-05  Score=53.44  Aligned_cols=92  Identities=33%  Similarity=0.446  Sum_probs=44.3

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      +...+..+...++++.|+..+.+++...+. ....+..++.++...+++..|...+..++...|.....+..++..+.. 
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-  248 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-
Confidence            333333344445555555555555555555 355555555555555555555555555555555533333333333322 


Q ss_pred             HHHhhccccccchhhhhc
Q 044796          155 GNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~  172 (186)
                          .+.++.+...+.++
T Consensus       249 ----~~~~~~~~~~~~~~  262 (291)
T COG0457         249 ----LGRYEEALEALEKA  262 (291)
T ss_pred             ----cCCHHHHHHHHHHH
Confidence                33444444444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.6e-06  Score=61.20  Aligned_cols=87  Identities=17%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796           15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIK   94 (186)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   94 (186)
                      .++...+|..|+..++-.+..+...                                ....-.++|.|++.+|+|++|+.
T Consensus        31 dfls~rDytGAislLefk~~~~~EE--------------------------------E~~~~lWia~C~fhLgdY~~Al~   78 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREE--------------------------------EDSLQLWIAHCYFHLGDYEEALN   78 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhh--------------------------------hHHHHHHHHHHHHhhccHHHHHH
Confidence            4456677888887777665443331                                12566778999999999999999


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      .|+.+.+.+.-+.+.+.+++.|.+.+|.|.+|...-.++
T Consensus        79 ~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   79 VYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            999999877777889999999999999999998866655

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.41  E-value=1e-05  Score=57.62  Aligned_cols=115  Identities=10%  Similarity=-0.034  Sum_probs=89.3

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh-h
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK-L   86 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~   86 (186)
                      .|........+.+..+.|...|.+|++..+-                                 ...+|...|.+.+. .
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~---------------------------------~~~vy~~~A~~E~~~~   49 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC---------------------------------TYHVYVAYALMEYYCN   49 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----------------------------------THHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC---------------------------------CHHHHHHHHHHHHHhC
Confidence            4666677777888899999999999854333                                 12678888888666 4


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN---QAKRTILRKLKEMG  155 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~  155 (186)
                      ++.+.|...|+.+++..|.+...|......+...|+.+.|...|++++..-|...   .+|......-...|
T Consensus        50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            5556699999999999999999999999999999999999999999998877755   56666666666644

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=2.1e-06  Score=63.90  Aligned_cols=123  Identities=17%  Similarity=0.094  Sum_probs=91.0

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHH-HhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVA-LRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..++..+...+..|++.+|.+.+... +...|...                       .-|+.  ..-..|.++|.+++
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~-----------------------~T~q~--~~cif~NNlGcIh~  294 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT-----------------------ITPQL--SSCIFNNNLGCIHY  294 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc-----------------------ccchh--hhheeecCcceEee
Confidence            455666677777777777777765432 11111100                       00000  01256789999999


Q ss_pred             hhccHHHHHHHHHHHHhc---------Cc---------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796           85 KLGKFEESIKECTKALEL---------NP---------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT  146 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  146 (186)
                      ++|.|.-+..+|.+|++.         .|         ...+++|+.|..+...|++-.|.++|.++......+|..|..
T Consensus       295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLR  374 (696)
T KOG2471|consen  295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLR  374 (696)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence            999999999999999961         11         135789999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 044796          147 ILRKLKE  153 (186)
Q Consensus       147 l~~~~~~  153 (186)
                      ++.+.+.
T Consensus       375 lAEcCim  381 (696)
T KOG2471|consen  375 LAECCIM  381 (696)
T ss_pred             HHHHHHH
Confidence            9998765

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.36  E-value=2.5e-07  Score=68.32  Aligned_cols=98  Identities=31%  Similarity=0.340  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ...-..+.-.+..++|+.|+..|.++++++|+++..+-+++.++...+++..|+..+.++++++|....+++..|.+...
T Consensus         5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen    5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence            34455677888899999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             HHHHhhccccccchhhhhcc--cCC
Q 044796          154 MGNSILGRFGMSTDNFKAVK--DPN  176 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~--~~~  176 (186)
                           .+++.+|...|+...  .|+
T Consensus        85 -----l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   85 -----LGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             -----HHHHHHHHHHHHHhhhcCcC
Confidence                 888888888887663  454

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5.9e-06  Score=56.43  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CcccH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYM----------KALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      .++...|+-+++.|+|.+|...|..|+..        .|..+          ..+.+++.|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            67788999999999999999999998854        44443          4678999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          136 FDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       136 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .+|.+..+++..+.+...     .=...+|...|..++..+|
T Consensus       259 ~~~~nvKA~frRakAhaa-----~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAA-----VWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             cCCchHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHhcCh
Confidence            999999999999987776     5566678888887764443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.33  E-value=1.7e-05  Score=58.24  Aligned_cols=121  Identities=16%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      .++.++|++++-.|+|+.|+++|++.+.+.-.                           .......+...+.+|.+|.-.
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAie---------------------------lg~r~vEAQscYSLgNtytll  288 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE---------------------------LGNRTVEAQSCYSLGNTYTLL  288 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHH---------------------------hcchhHHHHHHHHhhhHHHHH
Confidence            46778999999999999999999998776433                           011122347888999999999


Q ss_pred             ccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCC--ChHHHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILEF----DPS--NNQAKRTILRKLKEM  154 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~  154 (186)
                      .++++||.++.+-+.+..      ....+.+.+|.++-.+|..++|+.+.+..+++    +..  ...+..++......+
T Consensus       289 ~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l  368 (639)
T KOG1130|consen  289 KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL  368 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence            999999999999887633      24678899999999999999999888877664    222  234556666655553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.5e-05  Score=53.55  Aligned_cols=147  Identities=20%  Similarity=0.229  Sum_probs=110.3

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHH-HHHHHHHhh
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICH-SNRGICFLK   85 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~   85 (186)
                      .-+..+......|++.+|...|..++...|.+.++...++.++ ..++.+.+...+...|.........- ...-..+.+
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            3455677888999999999999999999999999999999887 66777777777777666553332221 111122223


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKLKEMG  155 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~  155 (186)
                      .....+ +..+++.+..+|++..+-+.+|..+...|+.++|++.+-..++.+..  +..+...+-.++..+|
T Consensus       216 aa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         216 AAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            322222 23456677789999999999999999999999999999999988654  5778888888777755

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.30  E-value=4.5e-05  Score=51.71  Aligned_cols=133  Identities=29%  Similarity=0.402  Sum_probs=97.6

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH-HH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI-CF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~   83 (186)
                      ....+...|......+++..++..+..++...+...                                 ......+. ++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~  140 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPD---------------------------------LAEALLALGAL  140 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---------------------------------hHHHHHHHHHH
Confidence            345677778888888888888888888888777731                                 22333333 77


Q ss_pred             hhhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhh
Q 044796           84 LKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~  159 (186)
                      ...|+++.|+..+.+++..+|   .........+..+...++++.|+..+.+++...|. ....+..++..+..     .
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  215 (291)
T COG0457         141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-----L  215 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-----c
Confidence            888888888888888888766   35566666666677888888888888888888888 67778888877777     6


Q ss_pred             ccccccchhhhhcccC
Q 044796          160 GRFGMSTDNFKAVKDP  175 (186)
Q Consensus       160 ~~~~~A~~~~~~~~~~  175 (186)
                      +.++.|+..+..++..
T Consensus       216 ~~~~~a~~~~~~~~~~  231 (291)
T COG0457         216 GKYEEALEYYEKALEL  231 (291)
T ss_pred             ccHHHHHHHHHHHHhh
Confidence            6677777777666433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=1.5e-05  Score=59.41  Aligned_cols=143  Identities=13%  Similarity=-0.016  Sum_probs=86.2

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchh----HHHhhCCCcchhHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSAS----EKKEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   78 (186)
                      ..-+..|...|.-.+++.+...|.+.+..||...|.+--.....-........+.    +.+.+...|.+.    .+|..
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c----~~W~k  476 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC----YAWSK  476 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh----HHHHH
Confidence            3455666666666677777777777777777777765433222222223333322    333344444443    77777


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA--HEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      .|..-..+|+.+.|...|+-|+.....+..-+...+.+  -...|.++.|...|++.++..+... +|...+..
T Consensus       477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f  549 (677)
T KOG1915|consen  477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF  549 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence            77777777777777777777777655444433333333  4466777777777777777777655 66666543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=8.4e-06  Score=57.93  Aligned_cols=94  Identities=19%  Similarity=0.254  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      .+.-+-.-|+-|++.++|..|+.+|.++|.....+    ...|.++|-|...+|+|..|+....+++.++|.+..+++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            45667788999999999999999999999876544    45788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhhh
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFK  170 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~  170 (186)
                      +.|+..     ++++.+|..+.+
T Consensus       160 Akc~~e-----Le~~~~a~nw~e  177 (390)
T KOG0551|consen  160 AKCLLE-----LERFAEAVNWCE  177 (390)
T ss_pred             hHHHHH-----HHHHHHHHHHHh
Confidence            999988     666555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=2.2e-05  Score=56.15  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=98.9

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc----hhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS----ASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      .+-..+..|++-+|...+++.++-.|.+.-++-..-... ..+..    ....+.+.......|-.+-..-.++-.+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            445567788999999999999999998765544332222 22222    2222222221112222223344456667778


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHHhhccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN----QAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      |-|++|....++++++||.+.-+.+.++-++.-.|++.++.+...+--.......    .-|...+.++..     -+.|
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE-----~aey  263 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE-----GAEY  263 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc-----ccch
Confidence            8889999999999999998888888888888888999888887766543322110    012223333334     6788


Q ss_pred             cccchhhhhc
Q 044796          163 GMSTDNFKAV  172 (186)
Q Consensus       163 ~~A~~~~~~~  172 (186)
                      +.|.+.|.+-
T Consensus       264 e~aleIyD~e  273 (491)
T KOG2610|consen  264 EKALEIYDRE  273 (491)
T ss_pred             hHHHHHHHHH
Confidence            8888888765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.26  E-value=2.3e-06  Score=40.30  Aligned_cols=31  Identities=32%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEFDP  138 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  138 (186)
                      .+|+.+|.++..+|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455666666666666666666666666665

...

>PRK10941 hypothetical protein; Provisional

Probab=98.26  E-value=2.9e-05  Score=54.73  Aligned_cols=77  Identities=12%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ......++-.++...++++.|+.+.+..+.+.|+++.-+..+|.++.++|.+..|...++..++..|+++.+..-..
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            45777888899999999999999999999999999999999999999999999999999999999999998755443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.25  E-value=7.7e-05  Score=49.31  Aligned_cols=69  Identities=20%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      ..+-+-..+|.+..++|.+++|+..++..... .-.+..-...|.++...|+.++|...|.+++..+++.
T Consensus       124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         124 LKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            34466677888888888888888777664432 1123345567888888888888888888888877443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.25  E-value=3.9e-05  Score=63.37  Aligned_cols=163  Identities=17%  Similarity=0.068  Sum_probs=109.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-----hhhccchhh-hhcCchhHHHhh----CCCcc--hhHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-----AESASAPEA-KEGQSASEKKEV----APAPE--MAELR   72 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~-~~~~~~~~~~~~----~~~~~--~~~~~   72 (186)
                      .+.....+|..+...|++++|...+++++...|....     +...++... ..++...+...+    .....  .....
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            4555666899999999999999999999986655332     223344333 334444333222    11111  11112


Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPT--------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN----  140 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----  140 (186)
                      ...+..+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++......    
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            356778899999999999999999999876221        22345678899999999999999999998864321    


Q ss_pred             -hHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          141 -NQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       141 -~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                       ..++..++.+...     .|+++.|...+..+
T Consensus       611 ~~~~~~~la~~~~~-----~G~~~~A~~~l~~a  638 (903)
T PRK04841        611 QLQCLAMLAKISLA-----RGDLDNARRYLNRL  638 (903)
T ss_pred             HHHHHHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence             2233344544444     78888888877766

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.24  E-value=6.9e-05  Score=61.92  Aligned_cols=96  Identities=11%  Similarity=0.079  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-------  139 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------  139 (186)
                      ..+...+|.++...|++++|...+.+++.....      ...++..+|.++...|++++|...+++++.+...       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            356678899999999999999999999975332      1346678899999999999999999999886322       


Q ss_pred             -ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          140 -NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       140 -~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                       ....+..++.++..     .|++++|...+..++
T Consensus       571 ~~~~~~~~la~~~~~-----~G~~~~A~~~~~~al  600 (903)
T PRK04841        571 MHEFLLRIRAQLLWE-----WARLDEAEQCARKGL  600 (903)
T ss_pred             HHHHHHHHHHHHHHH-----hcCHHHHHHHHHHhH
Confidence             12233445555555     889999988887764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=5.3e-05  Score=51.49  Aligned_cols=138  Identities=19%  Similarity=0.162  Sum_probs=88.4

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      +.+..-|+.+...++|..|-..|-++-+..-.                          .. ...+.+..|...+.||.+ 
T Consensus        35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k--------------------------~~-skhDaat~YveA~~cykk-   86 (288)
T KOG1586|consen   35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLK--------------------------AG-SKHDAATTYVEAANCYKK-   86 (288)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------------------------cC-CchhHHHHHHHHHHHhhc-
Confidence            33444445555666666666666666554332                          11 111123666666777655 


Q ss_pred             ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--
Q 044796           87 GKFEESIKECTKALELNPTY------MKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS--  157 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--  157 (186)
                      .+.++|+.++++++++..+-      ...+..+|.+|..- .++++|+.+|+++-+.-.... ....--.|+...+..  
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee-s~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE-SVSSANKCLLKVAQYAA  165 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh-hhhhHHHHHHHHHHHHH
Confidence            59999999999999986543      33455788888765 899999999999987654321 111112333334433  


Q ss_pred             hhccccccchhhhhcc
Q 044796          158 ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~~  173 (186)
                      .+++|..|++.|+++.
T Consensus       166 ~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4899999999998763

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.23  E-value=0.00018  Score=43.69  Aligned_cols=108  Identities=24%  Similarity=0.356  Sum_probs=77.0

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ......|...+..|-|++|...+.++++....-|.-                     ..-+....++-++..++..+..+
T Consensus        10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~e---------------------EaFDh~GFDA~chA~Ls~A~~~L   68 (144)
T PF12968_consen   10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAE---------------------EAFDHDGFDAFCHAGLSGALAGL   68 (144)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TT---------------------S---HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChH---------------------hhcccccHHHHHHHHHHHHHHhh
Confidence            334445567778899999999999999876552210                     01223344567788899999999


Q ss_pred             ccHHHHHHHHHHHHhc-------Cccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           87 GKFEESIKECTKALEL-------NPTY----MKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~-------~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      |+|++++...+++|..       +.+.    ..+.+..|.++..+|+.++|+..|+.+-+
T Consensus        69 gry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   69 GRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            9999999888888854       3333    45667889999999999999999998865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PLN03077 Protein ECB2; Provisional

Probab=98.22  E-value=3.4e-05  Score=63.40  Aligned_cols=101  Identities=12%  Similarity=0.134  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTI  147 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l  147 (186)
                      +...|..+...|...|+.++|+..|++..+  ..|+.. .+..+-.++.+.|..++|...|+...+..+-  +...+..+
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            346788888888889999999999998776  356544 3444445677888899999998888744322  24567777


Q ss_pred             HHHHHHHHHHhhccccccchhhhhc-ccCCCC
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAV-KDPNTG  178 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~  178 (186)
                      ...+.+     .|++++|.+.++.. +.|+..
T Consensus       632 v~~l~r-----~G~~~eA~~~~~~m~~~pd~~  658 (857)
T PLN03077        632 VDLLGR-----AGKLTEAYNFINKMPITPDPA  658 (857)
T ss_pred             HHHHHh-----CCCHHHHHHHHHHCCCCCCHH
Confidence            777777     88888888888765 455543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=9.4e-05  Score=50.68  Aligned_cols=107  Identities=16%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..+..-+.++...++|++|..++.++.+-...+...+.+                           +..+-..|.....
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA---------------------------AKayEqaamLake   83 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA---------------------------AKAYEQAAMLAKE   83 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH---------------------------HHHHHHHHHHHHH
Confidence            4556667788888999999999999999776665443332                           1444455556666


Q ss_pred             hccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           86 LGKFEESIKECTKALELN-----PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      +..+.++...++++....     |+-...-...+-=....-++++|+..|.+++.+-..
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            677777777777777652     332222233333344556777777777777665433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.20  E-value=4.3e-06  Score=39.35  Aligned_cols=33  Identities=33%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASV   38 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   38 (186)
                      ++.++.+|.++...|++++|+.+|+++++++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            468999999999999999999999999999995

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.18  E-value=0.00038  Score=48.16  Aligned_cols=131  Identities=14%  Similarity=0.130  Sum_probs=92.9

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      -.+...++..+++.+++++|+...++-+.+.|.+++                          ..    -+++.+|.+++.
T Consensus        71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--------------------------~d----Y~~YlkgLs~~~  120 (254)
T COG4105          71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--------------------------AD----YAYYLKGLSYFF  120 (254)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--------------------------hh----HHHHHHHHHHhc
Confidence            356788999999999999999999999999999544                          22    555556655543


Q ss_pred             --------hccHHHHHHHHHHHHhcCcccH---------------HH--HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           86 --------LGKFEESIKECTKALELNPTYM---------------KA--LIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        86 --------~~~~~~A~~~~~~al~~~p~~~---------------~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                              ..-..+|+..|+..+...|+..               .+  -...|..|.+.|.+-.|..-++.+++.-|+.
T Consensus       121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t  200 (254)
T COG4105         121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT  200 (254)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence                    2334678888888888888752               11  2234677888889999999999999887776


Q ss_pred             hHH---HHHHHHHHHHHHHHhhccccccchhhhh
Q 044796          141 NQA---KRTILRKLKEMGNSILGRFGMSTDNFKA  171 (186)
Q Consensus       141 ~~~---~~~l~~~~~~~~~~~~~~~~~A~~~~~~  171 (186)
                      ..+   +..+..++..     +|-.++|...-+.
T Consensus       201 ~~~~eaL~~l~eaY~~-----lgl~~~a~~~~~v  229 (254)
T COG4105         201 SAVREALARLEEAYYA-----LGLTDEAKKTAKV  229 (254)
T ss_pred             cchHHHHHHHHHHHHH-----hCChHHHHHHHHH
Confidence            544   4455555555     5555555554443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.00017  Score=49.19  Aligned_cols=115  Identities=21%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..+...++++ +..++.+|+.++++++++..+-...                           ..-+..+..+|.+|.
T Consensus        73 aat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf---------------------------~~aAk~~~~iaEiyE  124 (288)
T KOG1586|consen   73 AATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRF---------------------------TMAAKHHIEIAEIYE  124 (288)
T ss_pred             HHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHH---------------------------HHHHhhhhhHHHHHh
Confidence            445555555555 4558888888888888887762111                           112256678888887


Q ss_pred             hh-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           85 KL-GKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        85 ~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      .. .++++||.+|+.+-+.....      ...+...+..-..+++|.+|++.|++.....-+++...+..
T Consensus       125 sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~  194 (288)
T KOG1586|consen  125 SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA  194 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence            65 89999999999998764332      34667777778899999999999999998877776554443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=2.1e-05  Score=59.33  Aligned_cols=106  Identities=25%  Similarity=0.306  Sum_probs=89.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +..+..+..|+..+..+.+..|+..|.+++...|+.                                 ...+.+++.++
T Consensus       372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------------------------~~~l~nraa~l  418 (758)
T KOG1310|consen  372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------------------------IYLLENRAAAL  418 (758)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------------------------hHHHHhHHHHH
Confidence            456677888888888899999999999999998882                                 25666677776


Q ss_pred             hhh---ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           84 LKL---GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        84 ~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      ++.   |+.-.|+..+..+++++|....+|+.++.++..++++.+|+.+...+....|.+..
T Consensus       419 mkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  419 MKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            663   46678999999999999999999999999999999999999999999888886553

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=0.0001  Score=55.16  Aligned_cols=141  Identities=13%  Similarity=-0.009  Sum_probs=95.5

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchh----HHHhhCCCcchhHHHHHHHHHHHH
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSAS----EKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      ..|...|.--..+++++.|...|++||..+..+...|...+..- .......    ...++...|..+    ..|+..-.
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----qlWyKY~y  149 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----QLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----HHHHHHHH
Confidence            34566666667889999999999999999999888888776543 3222222    333444455444    77777777


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +--.+|+...|.+.|++=+...|+ ..+|...-..-.+....+.|...|++.+-.+|+ ...|...+..-..
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k  219 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEK  219 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHh
Confidence            777788888888888888888774 445555555555666677777777777777765 3345555544333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.11  E-value=7.8e-05  Score=56.99  Aligned_cols=116  Identities=21%  Similarity=0.136  Sum_probs=88.4

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTK   98 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   98 (186)
                      ....+.|.+.+....+..|+                                 .+-..+..|.++...|+.++|+..+++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~---------------------------------s~lfl~~~gR~~~~~g~~~~Ai~~~~~  292 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPN---------------------------------SALFLFFEGRLERLKGNLEEAIESFER  292 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---------------------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44667777888888888787                                 336777899999999999999999999


Q ss_pred             HHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHhhccc-------cccc
Q 044796           99 ALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA-KRTILRKLKEMGNSILGRF-------GMST  166 (186)
Q Consensus        99 al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~-------~~A~  166 (186)
                      ++......    .-.++.+|.++..++++++|..+|.+..+.+.-+... .+..|.++..     .++.       ++|.
T Consensus       293 a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~-----l~~~~~~~~~~~~a~  367 (468)
T PF10300_consen  293 AIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM-----LGREEEAKEHKKEAE  367 (468)
T ss_pred             hccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-----hccchhhhhhHHHHH
Confidence            88643332    3468899999999999999999999999976654443 3444556666     4444       7777


Q ss_pred             hhhhhc
Q 044796          167 DNFKAV  172 (186)
Q Consensus       167 ~~~~~~  172 (186)
                      +.|.++
T Consensus       368 ~l~~~v  373 (468)
T PF10300_consen  368 ELFRKV  373 (468)
T ss_pred             HHHHHH
Confidence            777766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.10  E-value=0.00011  Score=47.17  Aligned_cols=93  Identities=28%  Similarity=0.362  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCcc----------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELNPT----------------------YMKALIRRAEAHEKLEHFEEAIADMKK  132 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (186)
                      .....|......++.+.++..+.+++.+...                      ...+...++..+...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3344455666677888899999998877321                      134566778889999999999999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          133 ILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       133 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ++..+|.+-.++..+..++..     .|+...|++.|.+.
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~-----~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAA-----QGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHH-----TT-HHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHH-----CcCHHHHHHHHHHH
Confidence            999999999999999999999     78888888888655

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00027  Score=49.02  Aligned_cols=135  Identities=14%  Similarity=0.134  Sum_probs=93.5

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHh---hCCCcchhHHHHHHHHHHHHHHhhh
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE---VAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      -.--.++.+..+++-|....++..+.+.+..-...+-+.+...........+   +.....-.+..+.....++.|++.+
T Consensus       141 Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~  220 (299)
T KOG3081|consen  141 ALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh
Confidence            3345678888999999999999888876643222222222211111112211   1111111223458889999999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHH-HHHHHHHHHhcCCCChHHH
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE-AIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~  144 (186)
                      |+|++|...++.++..++++|+.+.++-.+-..+|...+ -.+.+.+....+|+.+.+.
T Consensus       221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            999999999999999999999999999999888887655 4567777778888887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.07  E-value=4.2e-05  Score=54.56  Aligned_cols=97  Identities=12%  Similarity=-0.021  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK-LEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      -+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            4677777888888889999999999997767778899999999666 567777999999999999999999999999998


Q ss_pred             HHHHHhhccccccchhhhhcccC
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .     .++.+.|...|++++..
T Consensus        82 ~-----~~d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   82 K-----LNDINNARALFERAISS   99 (280)
T ss_dssp             H-----TT-HHHHHHHHHHHCCT
T ss_pred             H-----hCcHHHHHHHHHHHHHh
Confidence            8     78888889999988643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.06  E-value=1.4e-05  Score=60.95  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=88.3

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES   92 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   92 (186)
                      |.-+...|+...|+.|+..|+...|...                                .....++|++..+-|-.-.|
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~--------------------------------~v~~v~la~~~~~~~~~~da  661 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQ--------------------------------DVPLVNLANLLIHYGLHLDA  661 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhh--------------------------------cccHHHHHHHHHHhhhhccH
Confidence            4444567788888888888888777621                                14567788888888888899


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           93 IKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        93 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      -..+.+++.++...|-.++-+|.++..+.+.+.|++.|++|++++|+++.+...+-.+
T Consensus       662 ~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  662 TKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999988899999999999999999999999999999999999887766543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=2.9e-05  Score=54.75  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=88.4

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCCh-h-hhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPE-R-AESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      +--+..+++.+.+.+|+......... |.-. . .....+..+..++.......++..|...  .+....+.|-+.++.|
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--EADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--ccchhccchheeeccc
Confidence            33456667777777777776554432 2111 1 1112223335566666666665555322  3477889999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      +++.|++-|+.+++...-+|..-++++.++++.|++..|+++....++.
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            9999999999999999889999999999999999999999987777654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.03  E-value=0.00017  Score=54.25  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=92.2

Q ss_pred             hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh---cCc-------hhHHHhhCCCc---c-----------hh
Q 044796           14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE---GQS-------ASEKKEVAPAP---E-----------MA   69 (186)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~---~-----------~~   69 (186)
                      ....+..+++.-++.-.+||+++|+.++++..++.....   ...       +.....+....   .           ..
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt  255 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT  255 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence            444788899999999999999999999999998864311   111       11111111110   0           00


Q ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHH
Q 044796           70 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEF-DPSNNQAKRT  146 (186)
Q Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~  146 (186)
                      .....+...+|.|..+.|+.++|++.++..++.+|.  +..++.++-.++..++.|.++...+.+.=++ -|+.....+.
T Consensus       256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence            011345567888999999999999999999887764  4668888999999999999998888887433 2455555444


Q ss_pred             HH
Q 044796          147 IL  148 (186)
Q Consensus       147 l~  148 (186)
                      -+
T Consensus       336 aA  337 (539)
T PF04184_consen  336 AA  337 (539)
T ss_pred             HH
Confidence            43

The molecular function of this protein is uncertain.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=98.03  E-value=1.5e-05  Score=37.12  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      +++.+|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.02  E-value=0.00026  Score=56.56  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEE   91 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (186)
                      --......++|.+|.....+.++..|+-+                                 .+....|..+.++|+.++
T Consensus        15 pi~d~ld~~qfkkal~~~~kllkk~Pn~~---------------------------------~a~vLkaLsl~r~gk~~e   61 (932)
T KOG2053|consen   15 PIYDLLDSSQFKKALAKLGKLLKKHPNAL---------------------------------YAKVLKALSLFRLGKGDE   61 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHCCCcH---------------------------------HHHHHHHHHHHHhcCchh
Confidence            34456788999999999999999999944                                 344445555555555555


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      |..+++..-...+++...+--+-.||..+|+.++|...|++++..+|+
T Consensus        62 a~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   62 ALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            555555444445555555555555555555555555555555555555

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=98.01  E-value=0.0001  Score=43.07  Aligned_cols=65  Identities=23%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHH
Q 044796           92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN--NQAKRTILRKLKEMGN  156 (186)
Q Consensus        92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~  156 (186)
                      .+..+++.+..+|+++.+.+.+|..+...|++++|++.+..+++.+|+.  ..+...+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4667889999999999999999999999999999999999999998875  7788888888888665

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.00  E-value=8.4e-05  Score=38.65  Aligned_cols=40  Identities=33%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .++.+|..++++|+|+.|..+.+.+++++|+|.++.....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4566777777777777777777777777777776655444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.99  E-value=0.00012  Score=53.02  Aligned_cols=164  Identities=18%  Similarity=0.153  Sum_probs=117.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh----cCchhHHH------hhCCCcchhHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE----GQSASEKK------EVAPAPEMAELRS   73 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~   73 (186)
                      +++......|..+++..++++|+..+.+.+..-.+...-+..+|.....    +..+.+..      ......+.....-
T Consensus         4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~   83 (518)
T KOG1941|consen    4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL   83 (518)
T ss_pred             chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999998766655555555543311    11111111      1111122222234


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH------
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ------  142 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------  142 (186)
                      .++.+++..+....+|.+++.+.+..+......+     .++..+|.++..++.++++++.|+.|+.+..++.+      
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            7888999999999999999999999998754433     57777999999999999999999999998665543      


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          143 AKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +...++..+..     +.+++.|.-+..++
T Consensus       164 vcv~Lgslf~~-----l~D~~Kal~f~~kA  188 (518)
T KOG1941|consen  164 VCVSLGSLFAQ-----LKDYEKALFFPCKA  188 (518)
T ss_pred             hhhhHHHHHHH-----HHhhhHHhhhhHhH
Confidence            45556666555     88888888777665

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.98  E-value=1.2e-06  Score=62.27  Aligned_cols=90  Identities=23%  Similarity=0.292  Sum_probs=77.2

Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      ..+.-.+..|.+++|+..|..+++++|.....+..++.++..++....|++.+..+++++|+...-+-..+.+...    
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl----  194 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL----  194 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH----
Confidence            3455566789999999999999999999999999999999999999999999999999999998888777755555    


Q ss_pred             hhccccccchhhhhc
Q 044796          158 ILGRFGMSTDNFKAV  172 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~  172 (186)
                       +|.+++|...+..+
T Consensus       195 -lg~~e~aa~dl~~a  208 (377)
T KOG1308|consen  195 -LGNWEEAAHDLALA  208 (377)
T ss_pred             -hhchHHHHHHHHHH
Confidence             66666666666555

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.93  E-value=0.00019  Score=54.88  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      --++..|..+...|+.++|+..|++++....+.+                             ....-+++.+|.++..+
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----------------------------Ql~~l~~~El~w~~~~~  318 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----------------------------QLHHLCYFELAWCHMFQ  318 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----------------------------hHHHHHHHHHHHHHHHH
Confidence            3467789999999999999999999985444411                             12236789999999999


Q ss_pred             ccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhcC
Q 044796           87 GKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHF-------EEAIADMKKILEFD  137 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~  137 (186)
                      .+|++|..++.+.++.+.-. .-..|..|.|+...|+.       ++|...|.++-.+-
T Consensus       319 ~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  319 HDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             chHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999976543 33455668999999999       88888888886543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.91  E-value=0.00027  Score=59.07  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ..|..+|..++...+-+.|...+.+|++.-|.  +.+.....|.+-++.|+.+.+...|+-.+.-.|.-.+.|.-+...-
T Consensus      1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence            77888888888888888888888888888776  6777777788888888888888888888888888888887777655


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .++.+.....|++++
T Consensus      1645 ik-----~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1645 IK-----HGDIKYVRDLFERVI 1661 (1710)
T ss_pred             Hc-----cCCHHHHHHHHHHHH
Confidence            55     556666666666664

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.91  E-value=3.2e-05  Score=35.92  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASV   38 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   38 (186)
                      ++++.+|.++...|++++|+..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            46899999999999999999999999999997

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.91  E-value=6.9e-05  Score=53.08  Aligned_cols=76  Identities=28%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      ..-...|.-..+.|+.++|...|+.|+.+.|++++++..+|.......+.-+|-.+|-+|+.++|.+.+++.+.++
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3334455556678999999999999999999999999999999999999999999999999999999999887765

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.89  E-value=0.0001  Score=38.37  Aligned_cols=43  Identities=26%  Similarity=0.384  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  116 (186)
                      +.++.+|..+.+.|+|++|..+++.+++++|++..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            5678899999999999999999999999999999887665544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.85  E-value=0.0012  Score=51.37  Aligned_cols=170  Identities=17%  Similarity=0.083  Sum_probs=91.7

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC----hhhhhccchhh-hhcCchhHHHhhC---CCcchhH--------
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVP----ERAESASAPEA-KEGQSASEKKEVA---PAPEMAE--------   70 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~--------   70 (186)
                      ..|...|..|...|+.+.|...|+++....-..    ..+|...|..- ...+.+.+.+.+.   ..|....        
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            446667777777777777777777777654332    23444444221 2222222222211   1121100        


Q ss_pred             -------HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCh
Q 044796           71 -------LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD--PSNN  141 (186)
Q Consensus        71 -------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~  141 (186)
                             .+..+|...+......|-++.....|++.+.+.--.|.+..+.|..+.....++++.+.|++.+.+.  |.-.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~  547 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY  547 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence                   1234556666666666666666666666666665566666667776666666777777777766654  3334


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          142 QAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      ++|...-.....  ...-.+.+.|...|+++++..|+
T Consensus       548 diW~tYLtkfi~--rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  548 DIWNTYLTKFIK--RYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHhcCCH
Confidence            444433322211  11123556666677777665543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.84  E-value=0.0012  Score=45.15  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhhhccH-------HHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796           72 RSICHSNRGICFLKLGKF-------EESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP  138 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  138 (186)
                      .+..+..+|.+|..+|+.       ..|+..|.++++...      +...+.+.+|.+..++|++++|.++|.+++....
T Consensus       117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            457788888999888874       456666666665432      2357889999999999999999999999998654


Q ss_pred             CCh-HHHHHHH
Q 044796          139 SNN-QAKRTIL  148 (186)
Q Consensus       139 ~~~-~~~~~l~  148 (186)
                      .+. .....++
T Consensus       197 ~s~~~~l~~~A  207 (214)
T PF09986_consen  197 ASKEPKLKDMA  207 (214)
T ss_pred             CCCcHHHHHHH
Confidence            433 2344444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.75  E-value=0.0021  Score=47.25  Aligned_cols=145  Identities=15%  Similarity=0.085  Sum_probs=107.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..+...+....+.|.++.|...+.++...++.....                             .+.+....+...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------------------------~~~v~~e~akll  194 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------------------------LPRVFLEYAKLL  194 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------------------------CcchHHHHHHHH
Confidence            456788999999999999999999999999877541110                             226677788888


Q ss_pred             hhhccHHHHHHHHHHHHhc---Cc-------------------------------ccHHHHHHHHHHHHHh------cCH
Q 044796           84 LKLGKFEESIKECTKALEL---NP-------------------------------TYMKALIRRAEAHEKL------EHF  123 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~---~p-------------------------------~~~~~~~~lg~~~~~~------g~~  123 (186)
                      ...|+..+|+..++..+..   .+                               ....++..+|......      +..
T Consensus       195 w~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~  274 (352)
T PF02259_consen  195 WAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESS  274 (352)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccH
Confidence            8889989998888887771   00                               1135677778777777      889


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh------------ccccccchhhhhcccCCC
Q 044796          124 EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL------------GRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       124 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~------------~~~~~A~~~~~~~~~~~~  177 (186)
                      ++++..|..+++++|+...+|..+|.....+-....            .-...|+..|-+++..++
T Consensus       275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~  340 (352)
T PF02259_consen  275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS  340 (352)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999987766544321            112356777766654433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.74  E-value=8.7e-05  Score=35.37  Aligned_cols=29  Identities=34%  Similarity=0.429  Sum_probs=24.5

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      ++..+|.++...|+|++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47889999999999999999999966544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.74  E-value=7e-05  Score=35.72  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH
Q 044796          110 LIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      +..+|.++..+|++++|+.+|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555555555555555555553

>smart00028 TPR Tetratricopeptide repeats

Probab=97.73  E-value=8e-05  Score=33.88  Aligned_cols=31  Identities=39%  Similarity=0.532  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      ++..+|.++...|++++|...|.++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555566666666666666666666655553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.72  E-value=0.0019  Score=38.88  Aligned_cols=95  Identities=23%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh-----
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL-----   86 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----   86 (186)
                      ++..++..|+.-+|++..+..+...+.+...|                              ......|.++..+     
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~------------------------------~lh~~QG~if~~lA~~te   51 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW------------------------------LLHRLQGTIFYKLAKKTE   51 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH------------------------------HHHHHHhHHHHHHHHhcc
Confidence            46788999999999999999999998855433                              2222233333221     


Q ss_pred             ------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           87 ------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        87 ------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                            --.-.+++++.++..+.|..+..++.+|.-+-....|++++.-.++++.+
T Consensus        52 n~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   52 NPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             CchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                  12346788888999998888888888887777777788888877777765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.0011  Score=50.04  Aligned_cols=76  Identities=18%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      ..|........+.+.+.+--..|.+++..+|+++..|...|.-.+..+. .+.|...|.++++.+|+++..|...-+
T Consensus       106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            7777777777777779999999999999999999999999988887776 999999999999999999998876654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.70  E-value=0.00025  Score=50.41  Aligned_cols=80  Identities=26%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.|..-...|......|+.++|...|+-|+.+.|.++                                 .++...|...
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p---------------------------------~~L~e~G~f~  160 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP---------------------------------QILIEMGQFR  160 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH---------------------------------HHHHHHhHHH
Confidence            4555666777788899999999999999999999944                                 6777777777


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  116 (186)
                      ...++.-+|-++|-+|+.++|.+.+++.+.+..
T Consensus       161 E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  161 EMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            777788888999999999999988888776543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.004  Score=41.44  Aligned_cols=96  Identities=10%  Similarity=0.042  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      ..-..+|..+...+++++|+..++.++....+.   +.+-.++|.+...+|.+++|+..+.....-.= .+..-...|.+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi  168 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence            445567888899999999999999999643322   44677899999999999999998876543110 12334556777


Q ss_pred             HHHHHHHhhccccccchhhhhcccC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +..     .|+-++|+..|++++..
T Consensus       169 ll~-----kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         169 LLA-----KGDKQEARAAYEKALES  188 (207)
T ss_pred             HHH-----cCchHHHHHHHHHHHHc
Confidence            777     89999999999998644

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.64  E-value=0.0059  Score=39.45  Aligned_cols=108  Identities=12%  Similarity=0.030  Sum_probs=84.3

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ....+..........++.+++...+...-.+.|.                          .+       ..-..-|..+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~--------------------------~~-------e~~~~~~~l~i   55 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE--------------------------FP-------ELDLFDGWLHI   55 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--------------------------ch-------HHHHHHHHHHH
Confidence            4566778888888899999999999998889999                          22       66677889999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCChHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK-ILEFDPSNNQAKRTIL  148 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~  148 (186)
                      ..|+|.+|+..++.+....|..+.+--.++.|++.+|+.+  .+.+-. +++.. .++.+.....
T Consensus        56 ~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~-~d~~a~~Lv~  117 (160)
T PF09613_consen   56 VRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS--WRRYADEVLESG-ADPDARALVR  117 (160)
T ss_pred             HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcC-CChHHHHHHH
Confidence            9999999999999999999999988899999999999875  333333 44433 3555544333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.63  E-value=0.0024  Score=41.19  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..+.....+-...++.+++...+...--+.|..+.+-..-|.++...|++.+|+..|+.+....|..+-+.-.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            56667777778888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q 044796          154 MGNS  157 (186)
Q Consensus       154 ~~~~  157 (186)
                      +++.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            6554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.61  E-value=0.00039  Score=55.55  Aligned_cols=89  Identities=12%  Similarity=0.240  Sum_probs=80.8

Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      ..++|.+|+..+.+.++..|+.+.+....|.++.++|+.++|..+++..-...+++......+..++..     ++++++
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-----~~~~d~   95 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-----LGKLDE   95 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-----HhhhhH
Confidence            457899999999999999999999999999999999999999988888888888899999999999999     999999


Q ss_pred             cchhhhhcccCCCC
Q 044796          165 STDNFKAVKDPNTG  178 (186)
Q Consensus       165 A~~~~~~~~~~~~~  178 (186)
                      |...|+++....|+
T Consensus        96 ~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   96 AVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHHhhCCc
Confidence            99999999644443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.59  E-value=0.00013  Score=33.15  Aligned_cols=32  Identities=41%  Similarity=0.667  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPT  105 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  105 (186)
                      .++..+|.++..++++++|+.+++++++.+|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            57889999999999999999999999998885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.00049  Score=47.90  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----Cc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALEL----NP--TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      ..+.....+|.+.++.|+.+.|..+|+++-+.    +.  ....++.+.+.++...+++.+|...|.+.+..||.++.+.
T Consensus       210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~  289 (366)
T KOG2796|consen  210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN  289 (366)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence            34577888999999999999999999955433    21  2345677788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          145 RTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ++.+.|+.-     .|+...|++..+.++
T Consensus       290 NnKALcllY-----lg~l~DAiK~~e~~~  313 (366)
T KOG2796|consen  290 NNKALCLLY-----LGKLKDALKQLEAMV  313 (366)
T ss_pred             chHHHHHHH-----HHHHHHHHHHHHHHh
Confidence            999977777     888888888888775

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.50  E-value=0.00029  Score=47.94  Aligned_cols=61  Identities=30%  Similarity=0.468  Sum_probs=56.2

Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ......++.+.|.+.+.+++...|.+...|+++|....+.|+++.|...|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3455678999999999999999999999999999999999999999999999999999874

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.0042  Score=48.48  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=85.6

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .+++.|-.+++.++|..+++.|...+..-|.+..                          .. .-+.....++.||..+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------------------~~-~FaK~qR~l~~CYL~L~  408 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--------------------------SD-RFAKIQRALQVCYLKLE  408 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--------------------------hh-HHHHHHHHHHHHHhhHH
Confidence            4667788889999999999999999998887332                          11 12477888999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      +.+.|++.+++|-+.+|.++-.-...-.+....|..++|+.+.......
T Consensus       409 QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  409 QLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999999999888888888888889999999988877654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.46  E-value=0.0049  Score=48.17  Aligned_cols=165  Identities=15%  Similarity=0.049  Sum_probs=102.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-h------------------hhccchhh-hhcCchhHHHhhC
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-A------------------ESASAPEA-KEGQSASEKKEVA   63 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~------------------~~~~~~~~-~~~~~~~~~~~~~   63 (186)
                      +.+..|..-|..-....+++.|.++.++|... |..+. .                  |..++.+. ..+..+.......
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34678888888888999999999999999875 33322 1                  11111111 1122222222222


Q ss_pred             CCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc--ccHHHHHH---HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796           64 PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP--TYMKALIR---RAEAHEKLEHFEEAIADMKKILEFDP  138 (186)
Q Consensus        64 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p  138 (186)
                      ......-..|.+-.+.|..+..-.-|+++.+.|++.+.+.+  .-.+.|..   ....-+.--..+.|...|++|++..|
T Consensus       502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            22222223457788888888888889999999999998854  33444443   33444455578999999999999888


Q ss_pred             CChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          139 SNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       139 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      .  ..-..+-..+..+-.. -|--..|+..|+++
T Consensus       582 p--~~aKtiyLlYA~lEEe-~GLar~amsiyera  612 (835)
T KOG2047|consen  582 P--EHAKTIYLLYAKLEEE-HGLARHAMSIYERA  612 (835)
T ss_pred             H--HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence            3  3222222233333333 36667788888876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.45  E-value=0.0022  Score=53.94  Aligned_cols=162  Identities=17%  Similarity=-0.032  Sum_probs=116.8

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHh-ccCCCh----hhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALR-VASVPE----RAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      +-.|.+.---++..++.++|.+..++||. +++...    ..|.++-.+. .-+..+...+.++...++.. ....+..+
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L 1536 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKL 1536 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHH
Confidence            34455555566788999999999999986 444433    3444443333 22334444444443333221 12567778


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHH
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~  157 (186)
                      ..+|...+++++|.+.++.-++...+....|..+|..+++..+-+.|...+.+|++.-|.  ..+.....++....    
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk---- 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK---- 1612 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----
Confidence            889999999999999999999988888999999999999999999999999999999998  44555555555555    


Q ss_pred             hhccccccchhhhhcc
Q 044796          158 ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~~  173 (186)
                       .|+-+.+...|+-.+
T Consensus      1613 -~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1613 -YGDAERGRTLFEGLL 1627 (1710)
T ss_pred             -cCCchhhHHHHHHHH
Confidence             777777777887554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00029  Score=50.70  Aligned_cols=137  Identities=28%  Similarity=0.338  Sum_probs=103.4

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ++..+...+.|+..++.+++..|..-|.+++..-...+.       ........       ..+...........+++.+
T Consensus       219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~-------~~~~e~~~-------~~~~~~~~r~~~~~n~~~~  284 (372)
T KOG0546|consen  219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSR-------DREKEQEN-------RIPPLRELRFSIRRNLAAV  284 (372)
T ss_pred             hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccccc-------cccccccc-------ccccccccccccccchHHh
Confidence            455667778899999999999999999998875332000       00000000       0122222234566778899


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      -++.+.+..|+.....++..++....+++.++..+..+.++++|++.+..+....|++..+...+..+-..
T Consensus       285 ~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  285 GLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             cccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999887776654433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0036  Score=44.33  Aligned_cols=92  Identities=21%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHH-------------------------
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM-------------------------  130 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------------  130 (186)
                      -...+.-....|++.+|...+..++...|.+..+...++.|+...|+.+.|...+                         
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            3445556666777777777777777777777777777777777777776555433                         


Q ss_pred             ---------HHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          131 ---------KKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       131 ---------~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                               .+.+..+|++.++.+.++..+..     .|+.+.|.+.+-..
T Consensus       217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~-----~g~~e~Ale~Ll~~  262 (304)
T COG3118         217 AATPEIQDLQRRLAADPDDVEAALALADQLHL-----VGRNEAALEHLLAL  262 (304)
T ss_pred             hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence                     33334579999999999988888     88888888877544

>PRK10941 hypothetical protein; Provisional

Probab=97.44  E-value=0.003  Score=44.72  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .+.++=.++.+.++++.|+.+.+..+.+.|++                                 +.-+..+|.+|.++|
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---------------------------------p~e~RDRGll~~qL~  229 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPED---------------------------------PYEIRDRGLIYAQLD  229 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHHcC
Confidence            44556678899999999999999999999993                                 367788999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~  116 (186)
                      .+..|...++..++..|+++.+-.....+
T Consensus       230 c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        230 CEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             CcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            99999999999999999998876554443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.44  E-value=0.0038  Score=46.36  Aligned_cols=110  Identities=20%  Similarity=0.355  Sum_probs=81.1

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      ..-|...+++++|..|..-|..+|++..+-...-    .-.           .....+.....+.+--.+..||+.+++.
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~----k~~-----------~~~~~di~~vaSfIetklv~CYL~~rkp  244 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALS----KPF-----------KASAEDISSVASFIETKLVTCYLRMRKP  244 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcc----CCC-----------CCChhhHHHHHHHHHHHHHHhhhhcCCC
Confidence            3445677888999999999999988765521100    000           0001112222345566789999999999


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796           90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (186)
                      +.|+....+.+..+|.++.-+.+.|.|+..+.+|.+|-+.+--+.
T Consensus       245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988766554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.00023  Score=53.52  Aligned_cols=97  Identities=18%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHh-ccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALR-VASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      -.+.++|-++++.|.|.-+..+|.+|++ ...+     ...|  ...    .-...+...     .+-.+.++.|..+..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q-----L~~g--~~~----~~~~tls~n-----ks~eilYNcG~~~Lh  347 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ-----LRNG--LKP----AKTFTLSQN-----KSMEILYNCGLLYLH  347 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHH-----Hhcc--CCC----Ccceehhcc-----cchhhHHhhhHHHHh
Confidence            3467899999999999999999999997 2111     0001  000    000000001     133788999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEK  119 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  119 (186)
                      .|+.-.|.++|.+++...-.+|..|.+++.|+..
T Consensus       348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999998764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.41  E-value=0.0087  Score=39.75  Aligned_cols=103  Identities=18%  Similarity=0.042  Sum_probs=66.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .-..+..+|.-+.+.|+.+.|+++|.++........                              ...+++..+-.+..
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~------------------------------~~id~~l~~irv~i   84 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG------------------------------HKIDMCLNVIRVAI   84 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH------------------------------HHHHHHHHHHHHHH
Confidence            345677788888888888888888888666543311                              12366666777777


Q ss_pred             hhccHHHHHHHHHHHHhcCc--ccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           85 KLGKFEESIKECTKALELNP--TYM----KALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      ..+++..+..+..++-..-.  .+.    ......|..+...++|..|...|-.+..-.
T Consensus        85 ~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   85 FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            77788777777777665422  122    123334666777788888887777765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0038  Score=43.76  Aligned_cols=77  Identities=19%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ......++=..+...++++.|..+.++.+..+|.++.-+...|.+|.++|.+..|+..+...++..|+++.+-....
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            34566667778888999999999999999999999999999999999999999999999999999999987755444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.33  E-value=0.0066  Score=37.95  Aligned_cols=80  Identities=19%  Similarity=0.224  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhhh---ccHHHHHHHHHHHHh-cCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           74 ICHSNRGICFLKL---GKFEESIKECTKALE-LNPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        74 ~~~~~~a~~~~~~---~~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ...+++|.+....   .+..+.+.+++..++ ..|.. -+..+.++..++++++|+.++.+.+..++..|+|.++....-
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4555666666543   345677888888886 44432 456777888888888888888888888888888888766555


Q ss_pred             HHHHH
Q 044796          149 RKLKE  153 (186)
Q Consensus       149 ~~~~~  153 (186)
                      .+...
T Consensus       113 ~ied~  117 (149)
T KOG3364|consen  113 TIEDK  117 (149)
T ss_pred             HHHHH
Confidence            44433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.32  E-value=0.009  Score=45.38  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .-..+|.|..+.|+.++|++.++..++.+|...                               ...+..++..++..++
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-------------------------------~l~IrenLie~LLelq  309 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-------------------------------NLNIRENLIEALLELQ  309 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-------------------------------hhhHHHHHHHHHHhcC
Confidence            446789999999999999999999999888611                               2267888899999999


Q ss_pred             cHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHHhcCCCChHHH
Q 044796           88 KFEESIKECTKALEL-NPTYMKALIRRAEAHEK-LEH---------------FEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        88 ~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      .|.++...+.+-=.+ -|....+.|..+.+..+ .++               -..|++.+.+|++.+|..+...
T Consensus       310 ~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  310 AYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             CHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            999998877775332 24556666665554322 222               1347889999999999877543

The molecular function of this protein is uncertain.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=97.32  E-value=0.006  Score=34.28  Aligned_cols=69  Identities=22%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+....+.|.-++...+.++|+..+.++++..++.++                              ...++-.+..+|
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~------------------------------rf~~lG~l~qA~   53 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED------------------------------RFRVLGYLIQAH   53 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH------------------------------HHHHHHHHHHHH
Confidence            45777889999999999999999999999998888332                              335666677889


Q ss_pred             hhhccHHHHHHHHHHHHhc
Q 044796           84 LKLGKFEESIKECTKALEL  102 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~  102 (186)
                      ...|+|.+.+.+.-.=+.+
T Consensus        54 ~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   54 MEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999998877665543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.28  E-value=0.02  Score=42.48  Aligned_cols=133  Identities=17%  Similarity=0.062  Sum_probs=71.8

Q ss_pred             HHHHHHHhHhHHHH---cccHHHHHHHHHH-HHhccCCChhhhhccchhhhhc-------Cc-------hhHHHhhCCCc
Q 044796            5 EANEAKLEGNKLFA---EGKYEEALLQYEV-ALRVASVPERAESASAPEAKEG-------QS-------ASEKKEVAPAP   66 (186)
Q Consensus         5 ~a~~~~~~g~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~   66 (186)
                      .....+..|..+.+   .|+.++|+..+.. .....+.+++.+..+|.+++..       +.       ..+.+.+...+
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            34556678888888   9999999999999 4556667777777777665321       11       22223333333


Q ss_pred             chhHHHHHHHHHHHHHHhhhcc-HHHHHHH------HHHHH-hc----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796           67 EMAELRSICHSNRGICFLKLGK-FEESIKE------CTKAL-EL----NPTYMKALIRRAEAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        67 ~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~------~~~al-~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (186)
                      ..     ..-.+.+.+....|. ++...+.      +...+ +.    .-.+-..+-.++.+....|++++|...+++++
T Consensus       258 ~~-----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  258 DY-----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             cc-----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            21     122333444444443 1111111      11111 11    11122233345566667788888888888888


Q ss_pred             hcCCCChH
Q 044796          135 EFDPSNNQ  142 (186)
Q Consensus       135 ~~~p~~~~  142 (186)
                      .+.|....
T Consensus       333 ~l~~~~W~  340 (374)
T PF13281_consen  333 KLKPPAWE  340 (374)
T ss_pred             hcCCcchh
Confidence            77766443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.007  Score=43.85  Aligned_cols=117  Identities=9%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             hHHHHcccHHHHHHHHHHHHhc-cCCChhhhhccch---hh-----hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796           14 NKLFAEGKYEEALLQYEVALRV-ASVPERAESASAP---EA-----KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ..++..|+...-...+++++-. +|+.|-.-+.-|.   ..     ....++.+.+++..++...    ++....+.++.
T Consensus       145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~----Wa~Ha~aHVle  220 (491)
T KOG2610|consen  145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC----WASHAKAHVLE  220 (491)
T ss_pred             hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch----HHHHHHHHHHH
Confidence            3455666666677777776665 5554322222221   11     1122344445555554333    56666677777


Q ss_pred             hhccHHHHHHHHHHHHhcCcc-c---HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPT-Y---MKALIRRAEAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (186)
                      ..|++.++.++..+.-..-.. .   .--|..-+.++..-+.|+.|+..|.+-+
T Consensus       221 m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  221 MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            778888887777664432111 1   1224456777887888888888887655

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.28  E-value=0.0073  Score=47.46  Aligned_cols=138  Identities=17%  Similarity=0.044  Sum_probs=73.2

Q ss_pred             HHHHHHHhHhHHHHc-----ccHHHHHHHHHHHHhc-----cCCChhhhhccchhhhhcC------chhHHHhhCCCcch
Q 044796            5 EANEAKLEGNKLFAE-----GKYEEALLQYEVALRV-----ASVPERAESASAPEAKEGQ------SASEKKEVAPAPEM   68 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~   68 (186)
                      .+.+...+|.+++..     ++.+.|+.+|+.+...     .-.++.+.+.+|.++..+.      ...+...+......
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            455667778777754     5899999999988771     0113344555555443221      11111111111110


Q ss_pred             hHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCCCh
Q 044796           69 AELRSICHSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEKL----EHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        69 ~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~  141 (186)
                        ..+.+.+.+|.++..-.   +...|..+|..|...  .++.+.+++|.|+..-    .+...|..++.++.+.+  ++
T Consensus       323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~  396 (552)
T KOG1550|consen  323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NP  396 (552)
T ss_pred             --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Ch
Confidence              12355666666665543   455666666666653  3555666666665432    25566666666666655  34


Q ss_pred             HHHHHHH
Q 044796          142 QAKRTIL  148 (186)
Q Consensus       142 ~~~~~l~  148 (186)
                      .+...++
T Consensus       397 ~A~~~~~  403 (552)
T KOG1550|consen  397 SAAYLLG  403 (552)
T ss_pred             hhHHHHH
Confidence            4444444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.25  E-value=0.01  Score=37.16  Aligned_cols=43  Identities=21%  Similarity=0.327  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA  114 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  114 (186)
                      +-.+.+.+|..+.+.++|++++.+++..++..|++.++.-..-
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4578888999999999999999999999999999988765443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.25  E-value=0.02  Score=41.02  Aligned_cols=112  Identities=21%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             HHHcccHHHHHHHHHHHHhcc-CCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc-cHHHHH
Q 044796           16 LFAEGKYEEALLQYEVALRVA-SVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG-KFEESI   93 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~   93 (186)
                      ....|+++.|..++.++-... ..                          .|......+..+++.|......+ +++.|+
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~--------------------------~~~~~~~La~~~yn~G~~l~~~~~~~~~a~   56 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSL--------------------------DPDMAEELARVCYNIGKSLLSKKDKYEEAV   56 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcC--------------------------CcHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            467899999999999987766 33                          33344445688889999998988 999999


Q ss_pred             HHHHHHHhc----Ccc----------cHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           94 KECTKALEL----NPT----------YMKALIRRAEAHEKLEHFE---EAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        94 ~~~~~al~~----~p~----------~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .+++++.++    .+.          ...++..++.++...+.++   +|....+.+-.-.|+.+......-.++..
T Consensus        57 ~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~  133 (278)
T PF08631_consen   57 KWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK  133 (278)
T ss_pred             HHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc
Confidence            999998887    211          1346677788888877665   35555555656667766666444444433

It is also involved in sporulation [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.17  E-value=0.019  Score=42.28  Aligned_cols=131  Identities=23%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC-Chh----hhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASV-PER----AESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      .+...+..+..+...|+..+|+..++..+..... ...    .....+...    ..................+.++..+
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~l~~  258 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE----SLEVISSTNLDKESKELKAKAFLLL  258 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----ccccccccchhhhhHHHHHHHHHHH
Confidence            3566777888999999999999999999883222 111    000000000    0000000000112223345788888


Q ss_pred             HHHHhhh------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH-----------------HHHHHHHHHHHhc
Q 044796           80 GICFLKL------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-----------------EEAIADMKKILEF  136 (186)
Q Consensus        80 a~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~~~al~~  136 (186)
                      |......      +..++++..|..+++.+|....+|+..|..+...-+.                 ..|+..|-+++..
T Consensus       259 a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~  338 (352)
T PF02259_consen  259 AKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSL  338 (352)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            8888888      8899999999999999999999999999876654322                 2377778888877


Q ss_pred             CCC
Q 044796          137 DPS  139 (186)
Q Consensus       137 ~p~  139 (186)
                      .+.
T Consensus       339 ~~~  341 (352)
T PF02259_consen  339 GSK  341 (352)
T ss_pred             CCC
Confidence            776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.0099  Score=48.03  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=90.9

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE   90 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (186)
                      .|......|..++|...|.+.-..+--        ...+ ..+...++...-+.....+  ....|++.|..+...++.+
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR~DLl--------NKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKRYDLL--------NKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHH
Confidence            345566778888888888776543211        1111 1111111111111111111  2267788888888888888


Q ss_pred             HHHHHHHHH----------HhcCcc----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------
Q 044796           91 ESIKECTKA----------LELNPT----------YMKALIRRAEAHEKLEHFEEAIADMKKILEF--------------  136 (186)
Q Consensus        91 ~A~~~~~~a----------l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------  136 (186)
                      .|+++|+++          +..+|.          ++..|.+-|.-+...|+.+.|+.+|..|-..              
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~  955 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD  955 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence            888888874          222343          3556777788888999999999988887543              


Q ss_pred             -------CCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          137 -------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       137 -------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                             ...+..+.+.+++-|..     .|++.+|+..|.++
T Consensus       956 kAa~iA~esgd~AAcYhlaR~YEn-----~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  956 KAARIAEESGDKAACYHLARMYEN-----DGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHHHhhh-----hHHHHHHHHHHHHH
Confidence                   23456677888888888     77788888887655

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.16  E-value=0.013  Score=38.98  Aligned_cols=101  Identities=12%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTIL  148 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  148 (186)
                      ...+..+|..|.+.|+.++|+++|.++.......   ...++.+-.+....|++.....+..++-.+-.. ..+...+.-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3788999999999999999999999988754322   456677777888899999999999999776433 222333334


Q ss_pred             HHHHHHHHHhhccccccchhhhhcc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .++..+.....++|..|...|-.+.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            4565566666889998888886653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.15  E-value=0.015  Score=37.02  Aligned_cols=86  Identities=8%  Similarity=-0.111  Sum_probs=67.0

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ...+..........++++++...+...-.+.|+.                          +       ..-..-|.++..
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~--------------------------~-------e~d~~dg~l~i~   56 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNL--------------------------K-------ELDMFDGWLLIA   56 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--------------------------c-------ccchhHHHHHHH
Confidence            3445556666667888888888888877788882                          2       455667788888


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE  124 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  124 (186)
                      .|+|.+|+..++...+-.+..+.+--.++.|+.-+||.+
T Consensus        57 rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        57 RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            899999999999988877777888888899999888874

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.15  E-value=0.018  Score=35.25  Aligned_cols=98  Identities=18%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             HHHHHHH--HHHhhhccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----
Q 044796           74 ICHSNRG--ICFLKLGKFEESIKECTKALELNPT------------YMKALIRRAEAHEKLEHFEEAIADMKKIL-----  134 (186)
Q Consensus        74 ~~~~~~a--~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----  134 (186)
                      .+|..++  .-.+..|-|++|...+.++.....+            +.-++..++-++..+|+|++++..-.+++     
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            4454444  4455678899999999999986432            24467778889999999998776555555     


Q ss_pred             --hcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          135 --EFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       135 --~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                        +++.+....|.... +-..++-.-.|+.++|+..|+++
T Consensus        88 RGEL~qdeGklWIaaV-fsra~Al~~~Gr~~eA~~~fr~a  126 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAV-FSRAVALEGLGRKEEALKEFRMA  126 (144)
T ss_dssp             H--TTSTHHHHHHHHH-HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             ccccccccchhHHHHH-HHHHHHHHhcCChHHHHHHHHHH
Confidence              56666665554221 11122223389999999999876

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.13  E-value=0.0087  Score=44.26  Aligned_cols=109  Identities=10%  Similarity=0.021  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCChHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEK---LEHFEEAIADMKK-ILEFDPSNNQA  143 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~  143 (186)
                      .+....++=..|....+|+.-+...+..-..    -++.+.+-..+|.++.+   .|+.++|+..+.. .....+.++++
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4466677778899999999888888877666    44567788889999999   9999999999999 55667778999


Q ss_pred             HHHHHHHHHHHHHHh----hccccccchhhhhcccCCCCcc
Q 044796          144 KRTILRKLKEMGNSI----LGRFGMSTDNFKAVKDPNTGAY  180 (186)
Q Consensus       144 ~~~l~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~  180 (186)
                      +-.+|+++..+-...    ....+.|+..|.++-..+++.|
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            999999988765431    3457889999988844434433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.12  E-value=0.035  Score=41.92  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=87.5

Q ss_pred             HHHHHHHhHhHHHHccc-HHHHHHHHHHHHhccCCChhhhhccchh--------h------hhcCchhHHHhhCCCcchh
Q 044796            5 EANEAKLEGNKLFAEGK-YEEALLQYEVALRVASVPERAESASAPE--------A------KEGQSASEKKEVAPAPEMA   69 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~   69 (186)
                      -+.-+..-|..++..|. -++|+..++.++...|.+.......-..        .      ..-..+.....+...|-..
T Consensus       378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i  457 (549)
T PF07079_consen  378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI  457 (549)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc
Confidence            34556677778888887 8899999999999988876432211100        0      1111233333333322211


Q ss_pred             HHHHHHHHHH--HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           70 ELRSICHSNR--GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        70 ~~~~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      . ....-..+  |...+..|+|.++..+..-..++.| .+.++..+|.|+....+|++|..++...
T Consensus       458 ~-e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  458 S-EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             c-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            1 22333334  4566789999999999999999999 8999999999999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.12  E-value=0.011  Score=37.64  Aligned_cols=84  Identities=11%  Similarity=-0.011  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .............++.+++...+...--+.|+.+.+-..-|.++...|++.+|++.|+...+-.+..+-..-.++.|+..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34445555555688999999999888889999999999999999999999999999999999988888888888988888


Q ss_pred             HHHH
Q 044796          154 MGNS  157 (186)
Q Consensus       154 ~~~~  157 (186)
                      +|+.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            6553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.08  E-value=0.015  Score=33.98  Aligned_cols=53  Identities=17%  Similarity=0.145  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhcCHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFE  124 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~  124 (186)
                      +..+.+.+|..+...|++++|+..+-.+++.++++  ..+.-.+-.++..+|.-+
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            33788999999999999999999999999998876  445455555555555543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.007  Score=47.30  Aligned_cols=94  Identities=15%  Similarity=0.081  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ..+.+.|.-+++..+|..+++.|...+..-|.+      ......++.||..+.+.+.|++++..|-+.+|.++.....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            455667888889999999999999999876654      56788899999999999999999999999999999887777


Q ss_pred             HHHHHHHHHHhhccccccchhhhhc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ..+...     .+.-++|..+..+.
T Consensus       435 ~~~~~~-----E~~Se~AL~~~~~~  454 (872)
T KOG4814|consen  435 LQSFLA-----EDKSEEALTCLQKI  454 (872)
T ss_pred             HHHHHH-----hcchHHHHHHHHHH
Confidence            665555     55555555554433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.04  E-value=0.0081  Score=36.22  Aligned_cols=90  Identities=8%  Similarity=0.083  Sum_probs=64.1

Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEH-----------FEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      +|.-++..|++-+|+...+..+...+++.   ..+..-|.++..+..           .-.++++|.++..+.|..+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778899999999999999999887765   455566888776653           2458999999999999986666


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          145 RTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +.+|.-+-.     ...|+++..--++++
T Consensus        82 ~~la~~l~s-----~~~Ykk~v~kak~~L  105 (111)
T PF04781_consen   82 FELASQLGS-----VKYYKKAVKKAKRGL  105 (111)
T ss_pred             HHHHHHhhh-----HHHHHHHHHHHHHHh
Confidence            666643222     334444444444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.00  E-value=0.028  Score=41.12  Aligned_cols=104  Identities=16%  Similarity=0.034  Sum_probs=75.7

Q ss_pred             HHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc
Q 044796           27 LQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY  106 (186)
Q Consensus        27 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  106 (186)
                      .-|++.++.+|.+.+.|..+.........         ...      ..      .-....-.+.-+..+++|++.+|++
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~---------~~~------~~------~~~~~a~~E~klsilerAL~~np~~   64 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFR---------LQS------SS------KAERRALAERKLSILERALKHNPDS   64 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhcc---------ccc------cc------hhhHHHHHHHHHHHHHHHHHhCCCC
Confidence            45788889999988888776543311000         000      00      1111223567789999999999999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796          107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ...+..+=.+.....+.++..+-+++++..+|+++..|..+-...
T Consensus        65 ~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~  109 (321)
T PF08424_consen   65 ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR  109 (321)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            998888888888888999999999999999999999988776544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.91  E-value=0.0054  Score=46.91  Aligned_cols=90  Identities=24%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL---EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      -|.--+..+.+..|+..|.+++...|+....+.+++.++.+.   |+.-.|+.....+++++|....+|+.|++++..  
T Consensus       380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e--  457 (758)
T KOG1310|consen  380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE--  457 (758)
T ss_pred             hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH--
Confidence            333334455678999999999999999999999999888775   477789999999999999999999999999999  


Q ss_pred             HHhhccccccchhhhhcc
Q 044796          156 NSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~  173 (186)
                         ++++.+|+.+...++
T Consensus       458 ---l~r~~eal~~~~alq  472 (758)
T KOG1310|consen  458 ---LTRYLEALSCHWALQ  472 (758)
T ss_pred             ---HhhHHHhhhhHHHHh
Confidence               777777777765543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.082  Score=40.37  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=83.8

Q ss_pred             HHHHHHHhHhHHHHcc--cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEG--KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      -+..+..+|..+...|  +...+++|++..+...|...                              ..+.....+|.+
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~------------------------------veart~LqLg~l   55 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL------------------------------VEARTHLQLGAL   55 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH------------------------------HHHHHHHHHHHH
Confidence            3577888899999999  89999999999988877721                              122444445533


Q ss_pred             -HhhhccHHHHHHHHHHHHhcC---ccc----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           83 -FLKLGKFEESIKECTKALELN---PTY----MKALIRRAEAHEKLE-HFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        83 -~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                       +...++++.|..+++++..+-   |+.    .++...++.++.... .+..|...+++++++....|- |.  .+.+..
T Consensus        56 L~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~-ws--ckllfQ  132 (629)
T KOG2300|consen   56 LLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY-WS--CKLLFQ  132 (629)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch-hh--HHHHHH
Confidence             344667777777777777552   222    335556677777666 667777777777777766652 21  122222


Q ss_pred             HHHH--hhccccccchhh
Q 044796          154 MGNS--ILGRFGMSTDNF  169 (186)
Q Consensus       154 ~~~~--~~~~~~~A~~~~  169 (186)
                      +.+.  +.+++..|++.+
T Consensus       133 Laql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  133 LAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHHHHhhhccchhHHHHH
Confidence            3332  366666666664

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.91  E-value=0.0022  Score=45.79  Aligned_cols=78  Identities=15%  Similarity=0.080  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR-RAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      ++..|...+..-.+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.++++.+|.+|..|...-+
T Consensus       106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            34788888887788889999999999999999999999887 4556888999999999999999999999999876554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.90  E-value=0.087  Score=37.73  Aligned_cols=116  Identities=17%  Similarity=0.121  Sum_probs=82.3

Q ss_pred             hHHHHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..++.+++.|...+..+ +++.|+..++++.++-+....                   .....+........++..++.+
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-------------------~~~~~~~~~elr~~iL~~La~~   93 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-------------------MDKLSPDGSELRLSILRLLANA   93 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-------------------ccccCCcHHHHHHHHHHHHHHH
Confidence            45788999999999999 999999999999988422100                   0011344444566788888999


Q ss_pred             HhhhccHH---HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796           83 FLKLGKFE---ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP  138 (186)
Q Consensus        83 ~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  138 (186)
                      +...+.++   +|....+.+-...|+.+..+...=.++.+.++.+.+.+.+.+++..-+
T Consensus        94 ~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   94 YLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            98877654   555556566666787777775555555558888888888888887544

It is also involved in sporulation [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.90  E-value=0.028  Score=38.56  Aligned_cols=92  Identities=13%  Similarity=-0.031  Sum_probs=59.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..|..+..+|..+...|+.+.....+++|+......-.                    ....|........+.+.+|.+.
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~--------------------~e~~~~~~~~~~~l~YLigeL~  175 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE--------------------NEDFPIEGMDEATLLYLIGELN  175 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH--------------------hCcCCCCCchHHHHHHHHHHHH
Confidence            56788888999999888866666666665554332000                    0001111122347888999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccH-HHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYM-KALIRRAE  115 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~  115 (186)
                      .+.|++++|+.+|.+++....... ..+..+|.
T Consensus       176 rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  176 RRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            999999999999999997533222 34444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.85  E-value=0.0038  Score=30.38  Aligned_cols=29  Identities=31%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      .++.++|.++..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            35667777777777777777777777654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.84  E-value=0.0031  Score=43.10  Aligned_cols=61  Identities=26%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796           14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI   93 (186)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   93 (186)
                      ......++.+.|.+.|.+++.+-|+                                 ....|+.+|....+.|+++.|.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~---------------------------------w~~gwfR~g~~~ekag~~daAa   49 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPE---------------------------------WAAGWFRLGEYTEKAGEFDAAA   49 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCch---------------------------------hhhhhhhcchhhhhcccHHHHH
Confidence            3456788999999999999999999                                 3378899999999999999999


Q ss_pred             HHHHHHHhcCcccH
Q 044796           94 KECTKALELNPTYM  107 (186)
Q Consensus        94 ~~~~~al~~~p~~~  107 (186)
                      ..|++.++++|.+.
T Consensus        50 ~a~~~~L~ldp~D~   63 (287)
T COG4976          50 AAYEEVLELDPEDH   63 (287)
T ss_pred             HHHHHHHcCCcccc
Confidence            99999999999764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.80  E-value=0.0043  Score=30.15  Aligned_cols=33  Identities=36%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASV   38 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   38 (186)
                      +..+.++|..+...|++++|..++++++.+.-.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            567889999999999999999999999986543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.067  Score=37.57  Aligned_cols=80  Identities=18%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE-EAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        74 ~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+|..+=.+...++ +..+-+.++...++.+|.+-.+|+.+-.+...+|++. .-+...+.++..+..+--+|....-++
T Consensus        78 TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~  157 (318)
T KOG0530|consen   78 TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVL  157 (318)
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHH
Confidence            44444444444333 3556667777777777777777777777777777766 667777777777777766666666655


Q ss_pred             HH
Q 044796          152 KE  153 (186)
Q Consensus       152 ~~  153 (186)
                      ..
T Consensus       158 r~  159 (318)
T KOG0530|consen  158 RF  159 (318)
T ss_pred             HH
Confidence            55

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.78  E-value=0.035  Score=46.11  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh-----
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL-----   86 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----   86 (186)
                      ....+...+.|++|+..|++.-...|.-.+.+                              .+.+..|.+...+     
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~  530 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGY------------------------------EAQFRLGITLLEKASEQG  530 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccch------------------------------HHHHHhhHHHHHHHHhcC
Confidence            34567788899999999999999999843322                              3444444444321     


Q ss_pred             --ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           87 --GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        87 --~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                        ..+++|+..|++... .|..|--|...|.+|..+|++++-++++.-|++.-|..|.+-.
T Consensus       531 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        531 DPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             ChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence              357777777777544 5666777888888888888888888888888888877766543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.012  Score=41.09  Aligned_cols=128  Identities=17%  Similarity=0.080  Sum_probs=69.5

Q ss_pred             HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh--cCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH-HHH
Q 044796           17 FAEGKYEEALLQYEVALRVASVPERAESASAPEAKE--GQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE-ESI   93 (186)
Q Consensus        17 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~   93 (186)
                      .+...-..|+..-..+|.++|.+-.+|..+-.+...  .+.......+.......|.+...|..+-.+....|+.. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            345567778888888888888877776655443311  11111111111111122222366666655555566655 556


Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796           94 KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        94 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      ...+..+..+..+--+|..+-.+...-+.++.-+.+..+.++.+-.|..+|
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            666666666666666666666666666666655555555555444333333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.045  Score=38.04  Aligned_cols=78  Identities=12%  Similarity=0.067  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCChHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD----PSNNQA  143 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~  143 (186)
                      ..+-..+.++.+...|.+|-..+.+-...      .|+....+...-.++....||..|..+++..-++.    |++..+
T Consensus       151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~  230 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS  230 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence            55666778888888998887777764433      23334445555566777789999999999987653    444555


Q ss_pred             HHHHHHHH
Q 044796          144 KRTILRKL  151 (186)
Q Consensus       144 ~~~l~~~~  151 (186)
                      ..+|-..+
T Consensus       231 lenLL~ay  238 (308)
T KOG1585|consen  231 LENLLTAY  238 (308)
T ss_pred             HHHHHHHh
Confidence            55554433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.69  E-value=0.18  Score=38.31  Aligned_cols=153  Identities=10%  Similarity=-0.036  Sum_probs=99.4

Q ss_pred             hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-----hhcCc------hhHHHh---hCCCcchhHHHHHHHHHH
Q 044796           14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-----KEGQS------ASEKKE---VAPAPEMAELRSICHSNR   79 (186)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~   79 (186)
                      ....+.++...|..++.-...++|...-..-.+....     ..++.      ......   .....-...-....+..-
T Consensus       306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~  385 (549)
T PF07079_consen  306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG  385 (549)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            3446788899999999998899998663222222111     00111      111111   111111111123455556


Q ss_pred             HHHHhhhcc-HHHHHHHHHHHHhcCcccH----------------------------------------------HHHHH
Q 044796           80 GICFLKLGK-FEESIKECTKALELNPTYM----------------------------------------------KALIR  112 (186)
Q Consensus        80 a~~~~~~~~-~~~A~~~~~~al~~~p~~~----------------------------------------------~~~~~  112 (186)
                      |.-++..|. -++|+..++.+++..|.+.                                              +.-..
T Consensus       386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~  465 (549)
T PF07079_consen  386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF  465 (549)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence            666777776 7888888888887765432                                              11112


Q ss_pred             H--HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          113 R--AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       113 l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +  |.-++..|+|.++.-+-.=..++.| ++.++..+|.++..     .++|++|-+++...
T Consensus       466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-----~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-----NKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-----HhhHHHHHHHHHhC
Confidence            3  3347788999999999888999999 79999999988888     99999999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.69  E-value=0.12  Score=37.23  Aligned_cols=73  Identities=19%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhhc-------cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHH
Q 044796           76 HSNRGICFLKLG-------KFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        76 ~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      ...+|.++..-.       +...|+..+.++-...  ++.+.+.+|.+|..    ..++.+|..+|.++.+...  ..+.
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~  226 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC  226 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence            555666665431       3347888888888765  77888888987754    2388999999999998877  7777


Q ss_pred             HHHHHHHHH
Q 044796          145 RTILRKLKE  153 (186)
Q Consensus       145 ~~l~~~~~~  153 (186)
                      +.++ ++..
T Consensus       227 ~~~~-~~~~  234 (292)
T COG0790         227 YNLG-LMYL  234 (292)
T ss_pred             HHHH-HHHh
Confidence            7777 4444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.67  E-value=0.01  Score=28.11  Aligned_cols=32  Identities=19%  Similarity=0.096  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHH--HHHHHhcCCC
Q 044796          108 KALIRRAEAHEKLEHFEEAIAD--MKKILEFDPS  139 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~  139 (186)
                      +.++.+|..+...|++++|+..  |+-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455666666667777777766  4355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.67  E-value=0.0034  Score=48.60  Aligned_cols=97  Identities=15%  Similarity=0.141  Sum_probs=82.0

Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      .-|..+...|+...|+.++..|+...|... ....++|.++.+-|-.-+|-..+.+++.++...|-.++.+|+.+..   
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~---  688 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA---  688 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH---
Confidence            345666778999999999999999988654 3577899999999999999999999999998888888888887777   


Q ss_pred             HhhccccccchhhhhcccCCCCc
Q 044796          157 SILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                        +.+.+.|++.|+.+++.++..
T Consensus       689 --l~~i~~a~~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  689 --LKNISGALEAFRQALKLTTKC  709 (886)
T ss_pred             --HhhhHHHHHHHHHHHhcCCCC
Confidence              889999999999996554443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.15  Score=39.10  Aligned_cols=103  Identities=21%  Similarity=0.127  Sum_probs=83.0

Q ss_pred             HHHHHHHhHhHH-HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKL-FAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ++....++|..+ ....+++.|..+++++..+...                          .|+.......+...++.+|
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~--------------------------ip~fydvKf~a~SlLa~lh   98 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS--------------------------IPSFYDVKFQAASLLAHLH   98 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc--------------------------cccHHhhhhHHHHHHHHHH
Confidence            456677888655 4688999999999999988777                          5666556678888999999


Q ss_pred             hhhc-cHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           84 LKLG-KFEESIKECTKALELNPTYM----KALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        84 ~~~~-~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      .... .+..|...+.+++++....|    ...+.++.++.-..|+..|++.+.-.
T Consensus        99 ~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg  153 (629)
T KOG2300|consen   99 HQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG  153 (629)
T ss_pred             HHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence            8887 78999999999999876665    45667899999999999999885443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.58  E-value=0.1  Score=38.83  Aligned_cols=120  Identities=13%  Similarity=-0.015  Sum_probs=77.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh-----cc--chhhhhcCchhHHHhhCCCcchhHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES-----AS--APEAKEGQSASEKKEVAPAPEMAELRSICHS   77 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (186)
                      +.+.+.+++.++..+|+.+.|.+..++||=..........     ..  |.+.-.         . ..+.+. .-..+.+
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~---------~-~~~eNR-~fflal~  107 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD---------Y-RRPENR-QFFLALF  107 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC---------C-ccccch-HHHHHHH
Confidence            5688999999999999999999999999754432111111     11  111100         0 011111 1124556


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCcc-cHHH-HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPT-YMKA-LIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      .......+.|-+..|+++++-.+.++|. ||-. .+.+-....+.++++-=++.++....
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            6677888899999999999999999998 7654 44444445566777766666665544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.036  Score=44.32  Aligned_cols=117  Identities=34%  Similarity=0.595  Sum_probs=93.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .++......|+..++.+++..+.--|..++.+-|.+.                             ........+.+.++
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------------------------~~~a~~~~~~~s~~  101 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------------------------HVVATLRSNQASCY  101 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------------------------hhhhhHHHHHHHHH
Confidence            4566677788899999999998888888888888521                             11234555666666


Q ss_pred             hh--hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           84 LK--LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        84 ~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      +.  .++|.+++..++-++...|....++...+.+|.-++.++-|++...-....+|.+..+...+.+
T Consensus       102 m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e  169 (748)
T KOG4151|consen  102 MQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE  169 (748)
T ss_pred             hhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence            54  6799999999999999999999999999999999999999999988888999998766554444

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.51  E-value=0.033  Score=32.81  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796           15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIK   94 (186)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   94 (186)
                      ..++.|+|..|++.+.+..+.......                        +........+...+|.++...|++++|+.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~------------------------~~~~~~~~~all~lA~~~~~~G~~~~A~~   62 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNN------------------------SSSNSGLAYALLNLAELHRRFGHYEEALQ   62 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhccc------------------------chhhHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            456889999999999988877555211                        00001122556778888888888888888


Q ss_pred             HHHHHHhcC
Q 044796           95 ECTKALELN  103 (186)
Q Consensus        95 ~~~~al~~~  103 (186)
                      .+++++.+-
T Consensus        63 ~l~eAi~~A   71 (94)
T PF12862_consen   63 ALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHH
Confidence            888888763

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=96.49  E-value=0.021  Score=40.66  Aligned_cols=62  Identities=13%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      |..+|.+|+.+.|+....++.+|.+....|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997766668888888887776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.44  E-value=0.17  Score=40.02  Aligned_cols=127  Identities=16%  Similarity=0.052  Sum_probs=83.4

Q ss_pred             HHHhHhHHHHcc-----cHHHHHHHHHHHHhccCCChhhhhccchhhhhcC-ch---hHHHhhCCCcchhHHHHHHHHHH
Q 044796            9 AKLEGNKLFAEG-----KYEEALLQYEVALRVASVPERAESASAPEAKEGQ-SA---SEKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         9 ~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      ...+|.+|.+..     +...|+.+|.++-+...  +++.+.+|.+...+. ..   .+...+......  ....+.+.+
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l  366 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL  366 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence            556788887743     77889999999888754  456666666664433 22   222222211111  134778888


Q ss_pred             HHHHhh----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCh
Q 044796           80 GICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        80 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~  141 (186)
                      |.|+..    ..+...|..+++++.+.+  .+.+.+.++..+... +++..+...+....++.-..+
T Consensus       367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~  431 (552)
T KOG1550|consen  367 ALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA  431 (552)
T ss_pred             HHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH
Confidence            888864    357899999999999987  566677777665433 888887777777666554433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.39  E-value=0.011  Score=45.02  Aligned_cols=127  Identities=16%  Similarity=0.142  Sum_probs=94.1

Q ss_pred             HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796           15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI   93 (186)
Q Consensus        15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   93 (186)
                      ..+..|+.-.|-.-...++...|.+|......+.+. ..+..+.....+............+...+-.....+|++++|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            456789999999999999999999888777666665 4455555554443322222122245555566777899999999


Q ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           94 KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        94 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ......+...-.++++..-.+..-..+|-+++++..+++.+.++|...
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            999998887777788777777778888999999999999999988643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.36  E-value=0.16  Score=37.83  Aligned_cols=27  Identities=7%  Similarity=-0.017  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKAL  100 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al  100 (186)
                      +++...-......|+|+.|++..+...
T Consensus       189 WA~~AtLe~r~~~gdWd~AlkLvd~~~  215 (531)
T COG3898         189 WAARATLEARCAAGDWDGALKLVDAQR  215 (531)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            444444444555666666666665544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.35  E-value=0.019  Score=42.85  Aligned_cols=88  Identities=13%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcC--------ccc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           80 GICFLKLGKFEESIKECTKALELN--------PTY----------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~--------p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      |..++++++|..|..-|..++++-        |..          .-+--.+..||..+++.+-|+....+.+-++|..+
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            556667778888877777777652        211          12344678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          142 QAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      .-+..-+.+...     +.+|.+|.+.+..+
T Consensus       263 rnHLrqAavfR~-----LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRR-----LERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            999998988888     88888887776544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.32  E-value=0.23  Score=35.66  Aligned_cols=154  Identities=17%  Similarity=0.079  Sum_probs=96.0

Q ss_pred             hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhc-----CchhHHHhhCCCcchhHHHHHHHHHHHHHHhh---
Q 044796           14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEG-----QSASEKKEVAPAPEMAELRSICHSNRGICFLK---   85 (186)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---   85 (186)
                      ......+++..|...+.++-...  ++.....++..+..+     +...+...+.  .......+...+.+|.++..   
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g  124 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRG  124 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC
Confidence            33446677777777777766622  223444444433221     1122222222  11111234677888888877   


Q ss_pred             -hccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           86 -LGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLE-------HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        86 -~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                       ..+..+|..+|+++.+..-.. ..+.+.+|.++..-+       +...|...|.++-...  ++.+...++.++.. |.
T Consensus       125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-G~  201 (292)
T COG0790         125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK-GL  201 (292)
T ss_pred             cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc-CC
Confidence             558999999999999874333 344888888877642       3347999999998766  67788888855543 33


Q ss_pred             Hhhccccccchhhhhccc
Q 044796          157 SILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~  174 (186)
                      ....++.+|..+|.++-.
T Consensus       202 Gv~~d~~~A~~wy~~Aa~  219 (292)
T COG0790         202 GVPRDLKKAFRWYKKAAE  219 (292)
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            346678899999987743

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.24  E-value=0.083  Score=35.63  Aligned_cols=70  Identities=11%  Similarity=0.098  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHhhccccc
Q 044796           90 EESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS----NNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        90 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      ++|...|-++-... -+++...+.+|..|. ..+.++|+..+.+++++.+.    |+++...|+.++..     +++++.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-----~~~~e~  196 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-----LKNYEQ  196 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-----hcchhh
Confidence            45555554433221 134555555554443 56667777777777766443    36666666666666     555544


Q ss_pred             c
Q 044796          165 S  165 (186)
Q Consensus       165 A  165 (186)
                      |
T Consensus       197 A  197 (203)
T PF11207_consen  197 A  197 (203)
T ss_pred             h
Confidence            4

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.20  E-value=0.064  Score=31.58  Aligned_cols=59  Identities=22%  Similarity=0.438  Sum_probs=46.0

Q ss_pred             HHhhhccHHHHHHHHHHHHhcCc---------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           82 CFLKLGKFEESIKECTKALELNP---------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      .....|+|.+|++.+.+......         ....++.++|.+....|++++|+..+++++.+....
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            34567899999877777765421         124678889999999999999999999999886543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.19  E-value=0.087  Score=37.55  Aligned_cols=64  Identities=17%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      ..++..++..+...|+++.++..+++.+..+|.+-.+|..+=.++...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999998774

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.19  E-value=0.094  Score=29.58  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHH---HHHHHhcCHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA---EAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al  134 (186)
                      .-....|.-++...+.++|+..++++++..++.+.-+..+|   .++...|+|++.+.+-.+=+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777888888888888888777666555554   45777788877766544433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.16  E-value=0.0091  Score=25.96  Aligned_cols=23  Identities=22%  Similarity=0.023  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHH
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMK  131 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~  131 (186)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.13  Score=40.14  Aligned_cols=93  Identities=20%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK-ILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      +.......++...+......++..+|.+..++.++|.++...|....+...+.. +....|.+.+....+..++. +|+.
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~  151 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY  151 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH
Confidence            566666777777788888888888888888888888887777776666665555 77788888777777755555 4443


Q ss_pred             --hhccccccchhhhhc
Q 044796          158 --ILGRFGMSTDNFKAV  172 (186)
Q Consensus       158 --~~~~~~~A~~~~~~~  172 (186)
                        .+++..++.....++
T Consensus       152 ~~~l~~~~~~~~~l~~~  168 (620)
T COG3914         152 LKLLGRTAEAELALERA  168 (620)
T ss_pred             HHHhccHHHHHHHHHHH
Confidence              245555554444444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.13  E-value=0.38  Score=36.01  Aligned_cols=129  Identities=18%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +...-...|.+....|+-..|.+.-.++-++-..+.++                               -+...-++...
T Consensus        83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqep-------------------------------LIhlLeAQaal  131 (531)
T COG3898          83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEP-------------------------------LIHLLEAQAAL  131 (531)
T ss_pred             hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchH-------------------------------HHHHHHHHHHH
Confidence            33444455556666666666666666655443332222                               23333445555


Q ss_pred             hhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           85 KLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ..|+++.|.+-|+.-+. +|.- .-.+..+=.--..+|+.+.|..+-+++-...|.-++++...-.....     .|+++
T Consensus       132 ~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-----~gdWd  205 (531)
T COG3898         132 LEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-----AGDWD  205 (531)
T ss_pred             hcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-----cCChH
Confidence            55666666666555443 2321 11111111223355666666666666666666655555544433333     55555


Q ss_pred             ccchhhh
Q 044796          164 MSTDNFK  170 (186)
Q Consensus       164 ~A~~~~~  170 (186)
                      .|++...
T Consensus       206 ~AlkLvd  212 (531)
T COG3898         206 GALKLVD  212 (531)
T ss_pred             HHHHHHH
Confidence            5555543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.12  E-value=0.19  Score=37.42  Aligned_cols=110  Identities=17%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796           18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT   97 (186)
Q Consensus        18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   97 (186)
                      ....|+++...|..++...  +++....+                   ....|+..+.+..++.++..+|+.+.|-..++
T Consensus         6 hs~~Y~~~q~~F~~~v~~~--Dp~~l~~l-------------------l~~~PyHidtLlqls~v~~~~gd~~~A~~lle   64 (360)
T PF04910_consen    6 HSKAYQEAQEQFYAAVQSH--DPNALINL-------------------LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLE   64 (360)
T ss_pred             CCHHHHHHHHHHHHHHHcc--CHHHHHHH-------------------HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456777777777777654  22222111                   12334556899999999999999999999999


Q ss_pred             HHHhc--------------Ccc------------c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHH
Q 044796           98 KALEL--------------NPT------------Y---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTI  147 (186)
Q Consensus        98 ~al~~--------------~p~------------~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  147 (186)
                      +|+-.              ++.            |   -.++++....+.+.|-+..|++..+-.+.++|. ||-.-...
T Consensus        65 RALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~  144 (360)
T PF04910_consen   65 RALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF  144 (360)
T ss_pred             HHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence            88733              111            1   235667788899999999999999999999999 76544333


Q ss_pred             H
Q 044796          148 L  148 (186)
Q Consensus       148 ~  148 (186)
                      .
T Consensus       145 I  145 (360)
T PF04910_consen  145 I  145 (360)
T ss_pred             H
Confidence            3

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.2  Score=45.13  Aligned_cols=117  Identities=10%  Similarity=-0.024  Sum_probs=91.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..++.|.+.|.+....|.++.|..+.-.|.+..+.                                   .++...|...
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-----------------------------------~i~~E~AK~l 1712 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLP-----------------------------------EIVLERAKLL 1712 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-----------------------------------hHHHHHHHHH
Confidence            45788999999999999999999999888887766                                   8999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCChHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTY-----------------MKALIRRAEAHEKLEHF--EEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~  144 (186)
                      +..|+-..|+..+++.++.+-.+                 ..+.+..+.-....|++  .+-++.|..+..+.|.....+
T Consensus      1713 W~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~h 1792 (2382)
T KOG0890|consen 1713 WQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKH 1792 (2382)
T ss_pred             HhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCce
Confidence            99999999999999999663221                 12344444445555554  356789999999999888888


Q ss_pred             HHHHHHHHHHH
Q 044796          145 RTILRKLKEMG  155 (186)
Q Consensus       145 ~~l~~~~~~~~  155 (186)
                      +.+|..+.++-
T Consensus      1793 y~l~~yy~kll 1803 (2382)
T KOG0890|consen 1793 YHLGKYYDKLL 1803 (2382)
T ss_pred             eeHHHHHHHHh
Confidence            88886555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.07  E-value=0.047  Score=41.70  Aligned_cols=84  Identities=12%  Similarity=-0.024  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc-ccccchhh
Q 044796           91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR-FGMSTDNF  169 (186)
Q Consensus        91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~A~~~~  169 (186)
                      .-+..|+.|+...+.++..|.....-..+.+.+.+--..|.+++..+|+++..|..-+.-...     .+. ++.|...|
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe-----~n~ni~saRalf  163 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE-----INLNIESARALF  163 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh-----hccchHHHHHHH
Confidence            456788899999999999999998878888889999999999999999999999988766655     333 77888888


Q ss_pred             hhcccCCCCc
Q 044796          170 KAVKDPNTGA  179 (186)
Q Consensus       170 ~~~~~~~~~~  179 (186)
                      .+.+..+|++
T Consensus       164 lrgLR~npds  173 (568)
T KOG2396|consen  164 LRGLRFNPDS  173 (568)
T ss_pred             HHHhhcCCCC
Confidence            8887555443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.06  E-value=0.015  Score=27.90  Aligned_cols=29  Identities=34%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      +++..+|.+....++|++|+..|.+++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35667788888888888888888887765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.06  E-value=0.097  Score=42.72  Aligned_cols=62  Identities=13%  Similarity=0.052  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc---------------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL---------------------NPTYMKALIRRAEAHEKLEHFEEAIADMKK  132 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (186)
                      ..|.+.|......|+.+.|+.+|..|-..                     ...+..+-|.+|.-|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            77888888888888888888888876543                     234566889999999999999999998877


Q ss_pred             HHh
Q 044796          133 ILE  135 (186)
Q Consensus       133 al~  135 (186)
                      |-.
T Consensus       993 Aqa  995 (1416)
T KOG3617|consen  993 AQA  995 (1416)
T ss_pred             HHH
Confidence            643

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.02  E-value=0.037  Score=26.21  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             HHHHHhHhHHHHcccHHHHHHH--HHHHHhccCC
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQ--YEVALRVASV   38 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~   38 (186)
                      +.++.+|..+...|++++|++.  |.-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            5678899999999999999999  5588777775

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.84  E-value=0.48  Score=34.77  Aligned_cols=119  Identities=14%  Similarity=-0.048  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           22 YEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        22 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      .+.-+..|++||+.+|++.                                 ..+..+-.+..+..+.++....+++++.
T Consensus        47 ~E~klsilerAL~~np~~~---------------------------------~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSE---------------------------------RLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCH---------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4566788999999988832                                 4444444455566677888899999999


Q ss_pred             cCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHHHHH--hhcccccc
Q 044796          102 LNPTYMKALIRRAEAHEK---LEHFEEAIADMKKILEFDP-----------SNNQAKRTILRKLKEMGNS--ILGRFGMS  165 (186)
Q Consensus       102 ~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~~~~~~~--~~~~~~~A  165 (186)
                      .+|+++..|..+-.....   .-.+......|.+++..-.           .-+.....+..++..++..  -.|-.+.|
T Consensus        94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A  173 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA  173 (321)
T ss_pred             HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence            999998887765443332   2246777777777775421           1223344444444444443  27888888


Q ss_pred             chhhhhcc
Q 044796          166 TDNFKAVK  173 (186)
Q Consensus       166 ~~~~~~~~  173 (186)
                      +..++..+
T Consensus       174 va~~Qa~l  181 (321)
T PF08424_consen  174 VALWQALL  181 (321)
T ss_pred             HHHHHHHH
Confidence            88888764

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.36  Score=36.17  Aligned_cols=83  Identities=20%  Similarity=0.150  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhhc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCCCChHHHH
Q 044796           72 RSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLE----HFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      ...+|..+..+..+.+  ++..-++.++++++.+|.+-.+|..+-.+.....    ...+-+++..+++.-++.|-.+|.
T Consensus       108 sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWh  187 (421)
T KOG0529|consen  108 SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWH  187 (421)
T ss_pred             hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHH
Confidence            4488888888887765  4688999999999999998877776655544333    257788899999999999999999


Q ss_pred             HHHHHHHHH
Q 044796          146 TILRKLKEM  154 (186)
Q Consensus       146 ~l~~~~~~~  154 (186)
                      ....++..+
T Consensus       188 yRs~lL~~l  196 (421)
T KOG0529|consen  188 YRSLLLSTL  196 (421)
T ss_pred             HHHHHHHHh
Confidence            998877754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.64  E-value=0.026  Score=27.12  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=28.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccC
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVAS   37 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   37 (186)
                      |+.+..+|.+.+..++|++|+.-|.+++++..
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999998743

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.57  E-value=0.6  Score=36.42  Aligned_cols=93  Identities=15%  Similarity=-0.050  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +|+.+-..-.+..-...|...|.++-+....-..++..-|.+ |+..+|..-|.+.|+-.++..++.+.........+..
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~  447 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH  447 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            444444444455556677777777776544333455555544 6677888888888888888888888877777777777


Q ss_pred             HHHHhhccccccchhhhhc
Q 044796          154 MGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~  172 (186)
                           +++=+.+...|+++
T Consensus       448 -----lNdd~N~R~LFEr~  461 (656)
T KOG1914|consen  448 -----LNDDNNARALFERV  461 (656)
T ss_pred             -----hCcchhHHHHHHHH
Confidence                 44444455555554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.55  E-value=0.069  Score=45.19  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++..++.|......|.|.+|.+ ..+++.+..+-                         .....+..+..+..++.++.
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------------------------~~~~h~~~~~~~~~La~l~~  984 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------------------------MGVLHPEVASKYRSLAKLSN  984 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------------------------hhhcchhHHHHHHHHHHHHh
Confidence            45667778888888888888888 66666654431                         11222334588999999999


Q ss_pred             hhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHH
Q 044796           85 KLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--------DPSNNQAKRTIL  148 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~  148 (186)
                      .++++++|+....++.-+        .|+....+.+++...+..+....|+..+.++..+        .|.......+++
T Consensus       985 ~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle 1064 (1236)
T KOG1839|consen  985 RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLE 1064 (1236)
T ss_pred             hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHH
Confidence            999999999999888765        3455677888888888888999999999888765        455555566777


Q ss_pred             HHHHHHHHHhhccccccchhhhhcc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .++..     .++++.|+++.+.+.
T Consensus      1065 ~l~~~-----v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1065 LLLLG-----VEEADTALRYLESAL 1084 (1236)
T ss_pred             HHHhh-----HHHHHHHHHHHHHHH
Confidence            66666     677777777777663

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=0.42  Score=31.65  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccC
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVAS   37 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   37 (186)
                      -.-|..+..+-..+..++|+..|...-+..-
T Consensus        59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~   89 (221)
T COG4649          59 GDAFLAALKLAQENKTDDALAAFTDLEKTGY   89 (221)
T ss_pred             hHHHHHHHHHHHcCCchHHHHHHHHHHhcCC
Confidence            3445566666777788888888877665543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.41  E-value=0.23  Score=35.16  Aligned_cols=71  Identities=23%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEE   91 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (186)
                      +=..+...++++.|..+-++.+.++|.++                                 .-+...|.+|.++|.+.-
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp---------------------------------~eirDrGliY~ql~c~~v  233 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDP---------------------------------YEIRDRGLIYAQLGCYHV  233 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCCh---------------------------------hhccCcHHHHHhcCCchh
Confidence            33566788999999999999999999932                                 557779999999999999


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHH
Q 044796           92 SIKECTKALELNPTYMKALIRRAE  115 (186)
Q Consensus        92 A~~~~~~al~~~p~~~~~~~~lg~  115 (186)
                      |+..++..++.-|+++.+-...+.
T Consensus       234 Al~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         234 ALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             hHHHHHHHHHhCCCchHHHHHHHH
Confidence            999999999999998877554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.29  E-value=0.024  Score=24.55  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECT   97 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~   97 (186)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            567889999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.20  E-value=0.92  Score=36.49  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCCh-hhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPE-RAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      ++--|......+..++|.+++.++++.-.+.. ..-....        ...................+...++.+....+
T Consensus       304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~--------~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~  375 (608)
T PF10345_consen  304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS--------ESLSEASERIQWLRYLQCYLLFYQIWCNFIRG  375 (608)
T ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC--------cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence            44456777778888899999999887543321 0000000        00000000011111122356677888888999


Q ss_pred             cHHHHHHHHHHHHhcC---c------ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 044796           88 KFEESIKECTKALELN---P------TYMKALIRRAEAHEKLEHFEEAIADMK  131 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~---p------~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (186)
                      ++.+|....+......   |      ..+..++..|..+...|+.+.|+..|.
T Consensus       376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            9999988888777542   2      247789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=0.84  Score=35.92  Aligned_cols=127  Identities=13%  Similarity=0.074  Sum_probs=84.0

Q ss_pred             ccHHHHHHHHHHHHhccCCChhhhhcc--chhhhh-cCc----hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796           20 GKYEEALLQYEVALRVASVPERAESAS--APEAKE-GQS----ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES   92 (186)
Q Consensus        20 ~~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   92 (186)
                      +...-++..+...+.++|.++......  +..... ...    ......+...+...    .+..++|......|....+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC----PAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc----hHHHHHHHHHHHhhhHHHH
Confidence            334447777777888888888775444  222221 111    11222334444443    7778888777766665555


Q ss_pred             HHHH-HHHHhcCcccHHHHHHH------HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           93 IKEC-TKALELNPTYMKALIRR------AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        93 ~~~~-~~al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      +..+ .-+....|++......+      |..+..+|+..++.....++..+.|.++.+...+...
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            5444 44888899887766666      8888899999999999999999999987765555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.18  E-value=0.24  Score=35.41  Aligned_cols=77  Identities=25%  Similarity=0.390  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchh
Q 044796           89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDN  168 (186)
Q Consensus        89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~  168 (186)
                      |..=+....++++.  ....++..++..+...|+++.+...+++.+..+|.+-.+|..+-..+..     .|+...|+..
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-----~g~~~~ai~~  209 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-----NGRQSAAIRA  209 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-----cCCchHHHHH
Confidence            44445555555542  4567888999999999999999999999999999999999999988888     8888888888


Q ss_pred             hhhc
Q 044796          169 FKAV  172 (186)
Q Consensus       169 ~~~~  172 (186)
                      |++.
T Consensus       210 y~~l  213 (280)
T COG3629         210 YRQL  213 (280)
T ss_pred             HHHH
Confidence            8665

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.06  E-value=1.5  Score=35.39  Aligned_cols=140  Identities=13%  Similarity=0.084  Sum_probs=86.8

Q ss_pred             hHHHHHHHhHhHHH-HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLF-AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+...+.+|.+++ ...+++.|..++++++.+...+                           ........+.+.++.+
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---------------------------~~~d~k~~~~~ll~~i  109 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH---------------------------RLTDLKFRCQFLLARI  109 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---------------------------chHHHHHHHHHHHHHH
Confidence            45777888888887 6778999999999888776541                           1222234566677888


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcc----cHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPT----YMKALIRRA--EAHEKLEHFEEAIADMKKILEFD--PSNNQAKRTILRKLKEM  154 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~  154 (186)
                      +.+.+... |...+++.++...+    .....+++-  ......+++..|++.++......  +.++.+... ..+...+
T Consensus       110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~-~~l~~~~  187 (608)
T PF10345_consen  110 YFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL-ASLSEAL  187 (608)
T ss_pred             HHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH-HHHHHHH
Confidence            88887777 99999999986444    122222222  22223379999999999998876  455544332 2222222


Q ss_pred             HHHhhccccccchhhhhc
Q 044796          155 GNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~  172 (186)
                      -....+..+++++....+
T Consensus       188 l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  188 LHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             HHhcCCCchhHHHHHHHH
Confidence            222244455555555444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.05  E-value=0.11  Score=35.00  Aligned_cols=61  Identities=13%  Similarity=0.110  Sum_probs=47.1

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ++.++..+.+|..|. ..+.++++..+.+++++.+.+.                             ..++..+..++.+
T Consensus       138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-----------------------------~~n~eil~sLas~  187 (203)
T PF11207_consen  138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-----------------------------NFNPEILKSLASI  187 (203)
T ss_pred             CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-----------------------------CCCHHHHHHHHHH
Confidence            466777888886554 7789999999999999877621                             2245888899999


Q ss_pred             HhhhccHHHHH
Q 044796           83 FLKLGKFEESI   93 (186)
Q Consensus        83 ~~~~~~~~~A~   93 (186)
                      +.++|+++.|-
T Consensus       188 ~~~~~~~e~AY  198 (203)
T PF11207_consen  188 YQKLKNYEQAY  198 (203)
T ss_pred             HHHhcchhhhh
Confidence            99999998874

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.02  E-value=0.16  Score=36.09  Aligned_cols=62  Identities=15%  Similarity=0.050  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Q 044796           25 ALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP  104 (186)
Q Consensus        25 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  104 (186)
                      |..+|.+|+.+.|...                                 ..|..+|.++...|+.=.|+-+|-+++-...
T Consensus         1 A~~~Y~~A~~l~P~~G---------------------------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~   47 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG---------------------------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRI   47 (278)
T ss_dssp             HHHHHHHHHHH-TTBS---------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB
T ss_pred             CHHHHHHHHHhCCCCC---------------------------------CcccchhhhhccccchHHHHHHHHHHHhcCC
Confidence            6889999999999933                                 7888889888888998899999999987655


Q ss_pred             ccHHHHHHHHHHHHH
Q 044796          105 TYMKALIRRAEAHEK  119 (186)
Q Consensus       105 ~~~~~~~~lg~~~~~  119 (186)
                      ..+.+..++...+.+
T Consensus        48 Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen   48 PFPSARENLQKLFEK   62 (278)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH
Confidence            567788888877776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=1.1  Score=33.78  Aligned_cols=66  Identities=24%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEH--FEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      -+++-+.....+++.+|+.-.+|+.+..++.+.+.  +..-+...+++++.+|.|..+|...-.+...
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~  157 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ  157 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence            56778889999999999999999999999997775  5789999999999999999998776654443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.93  E-value=0.27  Score=35.26  Aligned_cols=46  Identities=24%  Similarity=0.278  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      .+...+..+...|.+.+|++..++++.++|-+.+.+..+-.++..+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~  326 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATL  326 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Confidence            3334455566666666666666666666666666666666666663

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.92  E-value=0.12  Score=23.20  Aligned_cols=29  Identities=17%  Similarity=0.036  Sum_probs=17.0

Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796          121 EHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus       121 g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      |+.+.+...|++++...|.++..|.....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            34555666666666666666666655443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=94.50  E-value=0.43  Score=30.46  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796          107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      .......+...+..|++.-|......++..+|++..++...+.++..+|..
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            345566677777788888888888888888888888888888888887664

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.44  E-value=0.9  Score=31.99  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      .+...+|..|+..|++++|+..++.+......      ...++..+..|...+|+.+..+...-+.
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            55567788888888888888888887654221      2445666777777888877776665444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.32  E-value=0.32  Score=37.84  Aligned_cols=139  Identities=11%  Similarity=-0.037  Sum_probs=82.3

Q ss_pred             HHHHhccCCChhhhhccchhhhhcCchh----HHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc
Q 044796           30 EVALRVASVPERAESASAPEAKEGQSAS----EKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPT  105 (186)
Q Consensus        30 ~~al~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  105 (186)
                      ++-++.+|.+.++|..+.........+.    +...+...|.    .+.+|.......+..++|+.....|.++|...=+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn   85 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSRCLVKVLN   85 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            5667778888877777766554443333    3333444443    3488888888888899999999999999875332


Q ss_pred             cHHHH-HHHHHHHHHhcCHHHHHHHHHH----H---HhcCCCChHHHHHHHHHHHHHHHH----hhccccccchhhhhcc
Q 044796          106 YMKAL-IRRAEAHEKLEHFEEAIADMKK----I---LEFDPSNNQAKRTILRKLKEMGNS----ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       106 ~~~~~-~~lg~~~~~~g~~~~A~~~~~~----a---l~~~p~~~~~~~~l~~~~~~~~~~----~~~~~~~A~~~~~~~~  173 (186)
                       .+.| ..+..+....|+...+....-+    +   +-.++....+|......+...-..    -..+.+.-.+.|++++
T Consensus        86 -lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral  164 (656)
T KOG1914|consen   86 -LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL  164 (656)
T ss_pred             -HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence             3333 3345555555554443332222    2   235677777888777665432211    1235555556666664

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.18  E-value=0.18  Score=22.50  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  116 (186)
                      |+++.|...|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467899999999999999999999877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.14  E-value=1.3  Score=37.60  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhC------CCcchhHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVA------PAPEMAELRSI   74 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~   74 (186)
                      +.+.+..|.++|....+.|...+|++.|-++     +++..+....... ..+..++..+.+.      ..|.......-
T Consensus      1100 ~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~ 1174 (1666)
T KOG0985|consen 1100 RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF 1174 (1666)
T ss_pred             hhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH
Confidence            3456788999999999999999999998763     3333333332222 2233333322211      11111110001


Q ss_pred             HH---------------------HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           75 CH---------------------SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        75 ~~---------------------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      ++                     ...|.-++..|.|+.|.-+|.        +..-|..++..+..+|+|+.|.+.-++|
T Consensus      1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            11                     112222333344444433332        2345677899999999999999988887


Q ss_pred             H
Q 044796          134 L  134 (186)
Q Consensus       134 l  134 (186)
                      -
T Consensus      1247 n 1247 (1666)
T KOG0985|consen 1247 N 1247 (1666)
T ss_pred             c
Confidence            4

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=94.02  E-value=1.3  Score=30.62  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      .-+.+.+...+|+...+.-++.+|.+......+=.++.-.|++++|+..++-+-++.|++.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3455677889999999999999999988888888888899999999999999999998864

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.75  E-value=1.3  Score=29.45  Aligned_cols=142  Identities=11%  Similarity=0.115  Sum_probs=85.1

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCCh--hhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPE--RAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE   90 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (186)
                      |..+++.+.-.++-..|..+|++-..+.  +++..+..+..              .....+..-+....|.+..+.|+..
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lek--------------tg~g~YpvLA~mr~at~~a~kgdta  111 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEK--------------TGYGSYPVLARMRAATLLAQKGDTA  111 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHh--------------cCCCcchHHHHHHHHHHHhhcccHH
Confidence            4456677777777788888887654421  22211111110              0111122345566777888888889


Q ss_pred             HHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796           91 ESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKIL-EFDPSNNQAKRTILRKLKEMGNSILGRFGMS  165 (186)
Q Consensus        91 ~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A  165 (186)
                      .|+..|..+-.-.|--    ..+...-+.++...|.|++-..-.+..- .-+|--..+...|+..-.+     .|++..|
T Consensus       112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-----agd~a~A  186 (221)
T COG4649         112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-----AGDFAKA  186 (221)
T ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-----ccchHHH
Confidence            9999988876644321    2245566777888888887655544432 2344445666677755555     8888888


Q ss_pred             chhhhhcc
Q 044796          166 TDNFKAVK  173 (186)
Q Consensus       166 ~~~~~~~~  173 (186)
                      ...|.++.
T Consensus       187 ~~~F~qia  194 (221)
T COG4649         187 KSWFVQIA  194 (221)
T ss_pred             HHHHHHHH
Confidence            88887764

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.59  E-value=1  Score=33.96  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=77.5

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ..+..+|.-|...|+++.|+++|.++-....+-                          .    -...++.+.-.+-.-+
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--------------------------k----hvInm~ln~i~VSI~~  200 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--------------------------K----HVINMCLNLILVSIYM  200 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--------------------------H----HHHHHHHHHHHHHHhh
Confidence            456778889999999999999999965554441                          1    1236777777777778


Q ss_pred             ccHHHHHHHHHHHHhcC---c-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------cCCCChHHHHHH
Q 044796           87 GKFEESIKECTKALELN---P-----TYMKALIRRAEAHEKLEHFEEAIADMKKILE--------FDPSNNQAKRTI  147 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~---p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l  147 (186)
                      |+|.....+-.+|...-   .     -.+.+....|.+...++.|..|..+|-.+..        +.|.+..++..+
T Consensus       201 ~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL  277 (466)
T KOG0686|consen  201 GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL  277 (466)
T ss_pred             cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh
Confidence            88888777777776641   0     0133556678888888899999999887753        235555555444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.51  E-value=0.2  Score=36.29  Aligned_cols=76  Identities=12%  Similarity=0.035  Sum_probs=56.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..|...+.-..+.|.+.+--..|.++++.+|.+.+.|...                                -+.-+..
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~--------------------------------c~~e~~~  154 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYC--------------------------------CAFELFE  154 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeee--------------------------------ccchhhh
Confidence            44566666666677788888888888999988866555321                                2233445


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRR  113 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~l  113 (186)
                      -++++.+...|.+++..+|+.|..|+..
T Consensus       155 ~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         155 IANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             hccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            6788999999999999999999887653

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.39  E-value=3.2  Score=32.83  Aligned_cols=165  Identities=13%  Similarity=0.097  Sum_probs=103.8

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcch-hHHHHHHHHHHHHHHhh
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEM-AELRSICHSNRGICFLK   85 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~   85 (186)
                      .|.....--...|+++...-.|++++-........|...+.-. ..++...+..++...... .+..+.....-+...-.
T Consensus       299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~  378 (577)
T KOG1258|consen  299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES  378 (577)
T ss_pred             HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence            3444455556889999999999999988888888888777554 224443333333222211 12234666667777778


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHH---HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA---DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      .|++..|...+++..+.-|+...+-........++|..+.+..   .+..... ...+......+..-+..+...+.++.
T Consensus       379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~  457 (577)
T KOG1258|consen  379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDA  457 (577)
T ss_pred             hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCH
Confidence            8999999999999998889888887777778888888887773   2222222 22233333333333333334445555


Q ss_pred             cccchhhhhcc
Q 044796          163 GMSTDNFKAVK  173 (186)
Q Consensus       163 ~~A~~~~~~~~  173 (186)
                      +.|...+..+.
T Consensus       458 ~~a~~~l~~~~  468 (577)
T KOG1258|consen  458 DLARIILLEAN  468 (577)
T ss_pred             HHHHHHHHHhh
Confidence            56666555553

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.24  E-value=0.55  Score=29.97  Aligned_cols=51  Identities=18%  Similarity=0.085  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE  124 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  124 (186)
                      ......+...+..|++.-|....+.++..+|++..+...++.++..+|.-.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            556677888889999999999999999999999999999999998887654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.24  E-value=0.46  Score=34.12  Aligned_cols=62  Identities=21%  Similarity=0.177  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ......+..|...|.+.+|++..+++++.+|-+...+..+-.++..+||--.+...|++.-+
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            34445678888999999999999999999999999999999999999999999988887643

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.16  E-value=0.32  Score=24.19  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796          111 IRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus       111 ~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5688999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=92.90  E-value=1.2  Score=36.04  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ...++.++|..+..+..|++|.++|...-..        -+...|++.+.+|++    ++.....-|++....-.++..+
T Consensus       795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf  862 (1189)
T KOG2041|consen  795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMF  862 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence            3478899999999999999999888775432        123445555555443    2333333455555555555555


Q ss_pred             HHHHHHhhccccccchhh
Q 044796          152 KEMGNSILGRFGMSTDNF  169 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~  169 (186)
                      ..     .|.-++|.+.|
T Consensus       863 ~s-----vGMC~qAV~a~  875 (1189)
T KOG2041|consen  863 TS-----VGMCDQAVEAY  875 (1189)
T ss_pred             Hh-----hchHHHHHHHH
Confidence            54     44444444444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.82  E-value=1.1  Score=38.41  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=76.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..+..++..+...|+.++|+..-.++.-+....                         .....+.....+.+++...
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~-------------------------~g~ds~~t~~~y~nlal~~ 1025 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV-------------------------LGKDSPNTKLAYGNLALYE 1025 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh-------------------------ccCCCHHHHHHhhHHHHHH
Confidence            345666777777788888888877766665443320                         1222233446777888888


Q ss_pred             hhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           84 LKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +..++...|+..+.++..+        .|.-.....+++.++...++++.|+++.+.|+..+
T Consensus      1026 f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1026 FAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888765        34444556788888888899999999999998754

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=92.73  E-value=0.45  Score=26.12  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      ++.+-.+...|...=..|++++|+.+|.+++..
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            356778888999999999999999999999875

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.63  E-value=0.43  Score=26.76  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      +.|..+...|..+-+.|++++|+.+|+++++.
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            35667788888899999999999999998875

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.56  E-value=0.19  Score=38.65  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ..|+...|-+-...++...|.+|......+.++..+|+|+.++..+..+-.
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~  351 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK  351 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence            456666666666666666666666666666666666666666665554433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.54  E-value=4.9  Score=33.52  Aligned_cols=163  Identities=11%  Similarity=-0.035  Sum_probs=93.8

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-hhhccchhh-hhcCchhHHHhhCCCcchhHH-HHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-AESASAPEA-KEGQSASEKKEVAPAPEMAEL-RSICHSNRGIC   82 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~   82 (186)
                      .+.+..-+..+...|...+|+.+.-.|  -+|.... .....+... ...........+...|...-. .+......+..
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~  424 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWL  424 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHH
Confidence            445566666777788888888775432  1222111 111111111 112222222223333322211 24566667777


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPT---------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .....++.+|.....++...-|.         ...+--..|.+....|+++.|.+..+.++..-|.+.....  ..++..
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r--~~~~sv  502 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR--IVALSV  502 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh--hhhhhh
Confidence            77888898888888777654332         1345556788899999999999999999998887643322  223333


Q ss_pred             HHH--Hhhccccccchhhhhc
Q 044796          154 MGN--SILGRFGMSTDNFKAV  172 (186)
Q Consensus       154 ~~~--~~~~~~~~A~~~~~~~  172 (186)
                      +|.  ...|++++|..+...+
T Consensus       503 ~~~a~~~~G~~~~Al~~~~~a  523 (894)
T COG2909         503 LGEAAHIRGELTQALALMQQA  523 (894)
T ss_pred             hhHHHHHhchHHHHHHHHHHH
Confidence            333  2578888777766544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.49  E-value=3.7  Score=31.21  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      ..+..++.-.|+|..|++.++- ++++..  ..+                      ....+-....++..|-+|+-+++|
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~-idl~~~--~l~----------------------~~V~~~~is~~YyvGFaylMlrRY  180 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLEN-IDLNKK--GLY----------------------TKVPACHISTYYYVGFAYLMLRRY  180 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhc-cCcccc--hhh----------------------ccCcchheehHHHHHHHHHHHHHH
Confidence            3445667778999998888753 222222  111                      111112337889999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 044796           90 EESIKECTKALEL  102 (186)
Q Consensus        90 ~~A~~~~~~al~~  102 (186)
                      .+|+..|...+-.
T Consensus       181 ~DAir~f~~iL~y  193 (404)
T PF10255_consen  181 ADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998853

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.43  E-value=5.7  Score=33.16  Aligned_cols=125  Identities=18%  Similarity=0.071  Sum_probs=83.8

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ......+.......++.+|..+..++...-|...                        .+......+......|.+....
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~------------------------~~~~~~l~ae~~aL~a~val~~  471 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM------------------------HSRQGDLLAEFQALRAQVALNR  471 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc------------------------ccchhhHHHHHHHHHHHHHHhc
Confidence            3444556666677777777777777655443310                        1112222345566678888999


Q ss_pred             ccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCChHH--HHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIADMKKILEFD----PSNNQA--KRTILRKLKEMG  155 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~--~~~l~~~~~~~~  155 (186)
                      |++++|+...+.++..-|.+     ..++...|.+..-.|++++|+.+...+.+..    ...-.+  ....+.++...|
T Consensus       472 ~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         472 GDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             CCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999886654     4567788999999999999999999988773    222222  333355556644

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.38  E-value=4  Score=31.25  Aligned_cols=122  Identities=24%  Similarity=0.325  Sum_probs=59.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .........|..++..|+|.+|+..|+.+|-.-|-..-        .......+..+.+....         -|.+|...
T Consensus       202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv--------~~~~E~~e~~eli~icr---------EYilgl~i  264 (422)
T PF06957_consen  202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVV--------ESREEEDEAKELIEICR---------EYILGLSI  264 (422)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--B--------SSCHHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeee--------cCHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence            34445677899999999999999999999876443100        00000011111111100         11122111


Q ss_pred             -hhh-----ccHHHHHHHHHHHH-----hcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           84 -LKL-----GKFEESIKECTKAL-----ELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        84 -~~~-----~~~~~A~~~~~~al-----~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                       ...     ...++....++-+.     ++.|.+...-++.|+. .++.++|..|...-++.|++.|....
T Consensus       265 El~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  265 ELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence             111     11222223333322     2334443333344433 56889999999999999999987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.25  E-value=2  Score=30.31  Aligned_cols=68  Identities=19%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      .....++|..++..|+|++|+.+|+.+........                           -......+...+..|+..
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------------------------W~~l~~~~l~~l~~Ca~~  230 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG---------------------------WWSLLTEVLWRLLECAKR  230 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------------------------cHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999966544311                           111234677788899999


Q ss_pred             hccHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKAL  100 (186)
Q Consensus        86 ~~~~~~A~~~~~~al  100 (186)
                      .|+.+..+...-+.+
T Consensus       231 ~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  231 LGDVEDYLTTSLELL  245 (247)
T ss_pred             hCCHHHHHHHHHHHh
Confidence            999988877765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.18  E-value=0.47  Score=35.83  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ....+..++.-+|+|..|++.++- +.++         +-+...++..|.+|.-+++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666888889999999988755 2222         22456789999999999999999999998874

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.13  E-value=2  Score=27.14  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             HHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhC-CCcchhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796           16 LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA-PAPEMAELRSICHSNRGICFLKLGKFEESIK   94 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   94 (186)
                      +...+.+...+.+++..+..++.++..+..+..++...+.......+. ......      .-..+..+.+.+-+++++.
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd------~~~~~~~c~~~~l~~~~~~   90 (140)
T smart00299       17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYD------IEKVGKLCEKAKLYEEAVE   90 (140)
T ss_pred             HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccCC------HHHHHHHHHHcCcHHHHHH
Confidence            345678999999999999988776666666665554333333333333 111111      1112333344445555555


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+.+.    ..+..+.   -.+....++++.|++++.+     +.+++.|..++..+
T Consensus        91 l~~k~----~~~~~Al---~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~  135 (140)
T smart00299       91 LYKKD----GNFKDAI---VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL  135 (140)
T ss_pred             HHHhh----cCHHHHH---HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence            55442    1112221   1122233677777777765     34666777666544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.93  E-value=4.6  Score=31.26  Aligned_cols=46  Identities=11%  Similarity=0.091  Sum_probs=31.8

Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      +.|+.+.|.+..+     ..+++..|..+|......|+++-|..+|.++-.
T Consensus       330 ~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  330 QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            4566666644332     234677888899999999999999888888743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.82  E-value=0.56  Score=23.30  Aligned_cols=26  Identities=12%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhc
Q 044796           77 SNRGICFLKLGKFEESIKECTKALEL  102 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~  102 (186)
                      ..+|.+|..+|+.+.|...++.++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            56899999999999999999999964

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.76  E-value=2.7  Score=32.51  Aligned_cols=44  Identities=16%  Similarity=-0.026  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE  125 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  125 (186)
                      ..|..+|...+..|+++-|..+|.++-..        ..+..++...|+.+.
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~lLy~~~g~~~~  391 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLLLYSSTGDREK  391 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHHHHHHhCCHHH
Confidence            68899999999999999998888875432        234445555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=91.67  E-value=1.4  Score=29.74  Aligned_cols=52  Identities=23%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      +..+..++..++.+...| ++..+..++.++...|+.++|.+...++..+.|.
T Consensus       125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            345566777888888888 6889999999999999999999999999999994

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.65  E-value=4.8  Score=30.59  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh--c--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE--L--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      ...+.+-..|..-+.|+.|.....++.-  .  +......++.+|.+..-+++|..|.++|-+|+...|..
T Consensus       210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            4555666777778888888777666551  1  11345567778888888889999999999998888874

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.41  E-value=3.3  Score=32.78  Aligned_cols=95  Identities=13%  Similarity=0.005  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD-PSNNQAKRTILRKLK  152 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  152 (186)
                      ..|..........|+++.....|++++---....+.|...+......|+.+-|-..+.++.++. |..+.++..-+..-.
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            4455555555667777777777777776666677777777777777777777777666666653 445555555554444


Q ss_pred             HHHHHhhccccccchhhhhcc
Q 044796          153 EMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .     .|++..|+..++.+.
T Consensus       378 ~-----~~n~~~A~~~lq~i~  393 (577)
T KOG1258|consen  378 S-----NGNFDDAKVILQRIE  393 (577)
T ss_pred             h-----hccHHHHHHHHHHHH
Confidence            4     566666666666654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.40  E-value=1.6  Score=24.56  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      ..+...|.-+-+.|++++|+.+|+++++
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4555666666667777766666666554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=91.21  E-value=4.8  Score=29.83  Aligned_cols=38  Identities=18%  Similarity=-0.006  Sum_probs=30.0

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchh
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPE   49 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~   49 (186)
                      +-...++..+..+-++.-..+++++|....++..++..
T Consensus       190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE  227 (556)
T KOG3807|consen  190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE  227 (556)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh
Confidence            33455677788888999999999999988888877743

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.76  E-value=4.2  Score=28.36  Aligned_cols=104  Identities=15%  Similarity=0.063  Sum_probs=58.1

Q ss_pred             HHHcccHHHHHHHHHHHHhccCCChhhhhc-cchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH-HHH-
Q 044796           16 LFAEGKYEEALLQYEVALRVASVPERAESA-SAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF-EES-   92 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A-   92 (186)
                      .+..|+|+.|+....-+|+.+-.-|+-+.. .+...                      .+-....+......|+. +-. 
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v----------------------aeev~~~A~~~~~ag~~~e~~~  150 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV----------------------AEEVANAALKAASAGESVEPYF  150 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH----------------------HHHHHHHHHHHHHcCCCCChHH
Confidence            367899999999999999987654433321 11111                      12222233333333331 111 


Q ss_pred             HHHHHHHHh-c-Cccc--HHHHHHHHHHHH---------HhcCHHHHHHHHHHHHhcCCCCh
Q 044796           93 IKECTKALE-L-NPTY--MKALIRRAEAHE---------KLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        93 ~~~~~~al~-~-~p~~--~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ...+..... . -|+.  ...+-..|..+.         ..++...|+.++++|+.++|+.+
T Consensus       151 ~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G  212 (230)
T PHA02537        151 LRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG  212 (230)
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence            111222211 1 1222  345666677773         45688899999999999999854

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.71  E-value=9.4  Score=35.59  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      .......+|...|.+.+..|+++.|-...-.|.+..  -+.++...|..+...|+...|+..+++.++.+
T Consensus      1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            334456999999999999999999999988888765  67899999999999999999999999999764

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.13  E-value=1.1  Score=25.16  Aligned_cols=34  Identities=35%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      ++.+..+...|...-..|++++|+.+|.++++..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   36 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF   36 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5678888999999999999999999999998753

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.55  E-value=1.3  Score=24.99  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=27.6

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      .|-.+...|...=..|++++|+.+|..+++..
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l   36 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL   36 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            46677788888889999999999999999864

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.54  E-value=8.3  Score=29.92  Aligned_cols=148  Identities=12%  Similarity=-0.079  Sum_probs=87.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc--------hhHHHh---------------h
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQS--------ASEKKE---------------V   62 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~---------------~   62 (186)
                      ++.|+.-..-+...++-+.|+....+++...|..   ...++........        +....+               .
T Consensus       302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL---~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~  378 (660)
T COG5107         302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL---TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV  378 (660)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch---heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc
Confidence            5667766667778889999999999998888871   1222211111000        000000               0


Q ss_pred             CCCcchhH--------HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHH
Q 044796           63 APAPEMAE--------LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKI  133 (186)
Q Consensus        63 ~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a  133 (186)
                      ...+...+        ...-+|+..-..-.+..-.+.|...|.++-+..-..+.++..-|.+ ++..|++.-|...|+-.
T Consensus       379 D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelG  458 (660)
T COG5107         379 DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELG  458 (660)
T ss_pred             cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHH
Confidence            00010000        0112333333344444456778888888776543445555555554 77889999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHH
Q 044796          134 LEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus       134 l~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      +...|+++-..+..-..+..+++
T Consensus       459 l~~f~d~~~y~~kyl~fLi~ind  481 (660)
T COG5107         459 LLKFPDSTLYKEKYLLFLIRIND  481 (660)
T ss_pred             HHhCCCchHHHHHHHHHHHHhCc
Confidence            99999988777766666777444

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=89.27  E-value=3.4  Score=25.01  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASV   38 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   38 (186)
                      +.+++......|...+..|+++.|.+...++-+..+.
T Consensus        55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~   91 (108)
T PF07219_consen   55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN   91 (108)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3467888889999999999999999999999776444

These are membrane protein involved in a late step of protoheme IX synthesis [].

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.12  E-value=1.4  Score=24.72  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=30.2

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      .++.+..+...|...=..|++++|+.+|..+++..
T Consensus         2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~   36 (75)
T cd02684           2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF   36 (75)
T ss_pred             cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45678888899988889999999999999998764

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.01  E-value=7.7  Score=28.85  Aligned_cols=28  Identities=14%  Similarity=0.227  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      ...+.+|.-|+...+++.|...|+++.+
T Consensus       126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~  153 (449)
T COG3014         126 LINYYKALNYMLLNDSAKARVEFNRANE  153 (449)
T ss_pred             HHHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence            3445567777777777777666666554

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.89  E-value=10  Score=29.95  Aligned_cols=65  Identities=23%  Similarity=0.097  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcC---cc----cHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCC
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELN---PT----YMKALIRRAEAHEKLEH-FEEAIADMKKILEFDPS  139 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~  139 (186)
                      -+..+|.++..+|+...|..+|+..++..   ..    .|-++|.+|..+..+|. ..++..++.+|-....+
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            34556777777787777777777777321   11    25677788888777777 77777777777766533

>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []

Probab=88.89  E-value=0.6  Score=34.94  Aligned_cols=56  Identities=14%  Similarity=0.280  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh-------hccccccchhhhhcccCCCCcc
Q 044796          123 FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI-------LGRFGMSTDNFKAVKDPNTGAY  180 (186)
Q Consensus       123 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~  180 (186)
                      ...|+.++++|..  .++|+.|..+|.+++.+|+..       ..-|.+|...+++|-+...+-|
T Consensus       334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy  396 (404)
T PF12753_consen  334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKY  396 (404)
T ss_dssp             HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccch
Confidence            4567788888875  677899999999999999973       3346777887777755555544

In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.87  E-value=1.4  Score=24.92  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      ..+-.+...|...=..|++++|+.+|.++|+..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l   36 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLL   36 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            346677888888889999999999999998754

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=88.46  E-value=1.6  Score=24.40  Aligned_cols=34  Identities=35%  Similarity=0.378  Sum_probs=28.4

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      ++.|..+...|...-..|++++|+.+|..+++..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l   38 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYL   38 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3567778888888889999999999999998753

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.22  E-value=1.6  Score=24.55  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=29.4

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      +..+-.++..|...-..|++++|..+|..+++..
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~   36 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL   36 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4567788888988889999999999999998864

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.14  E-value=1.5  Score=24.65  Aligned_cols=35  Identities=23%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccC
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVAS   37 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   37 (186)
                      ++.+..+...|...=..|++++|+.+|..+++..-
T Consensus         3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~   37 (75)
T cd02680           3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCI   37 (75)
T ss_pred             HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Confidence            45677788888888889999999999999998643

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.05  E-value=4.4  Score=31.80  Aligned_cols=62  Identities=13%  Similarity=-0.004  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHHHHHHhhcc-ccccchhhhhcccC
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMKKILEF---DPS----NNQAKRTILRKLKEMGNSILGR-FGMSTDNFKAVKDP  175 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~~~~~~~~-~~~A~~~~~~~~~~  175 (186)
                      -++.+|.++..+|+...|..+|..+++.   ..+    -|.+++.+|..+..     ++. +.++..++.+|.+-
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-----~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-----LGGGLKEARALLLKAREY  520 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-----cccChHHHHHHHHHHHhh
Confidence            4567899999999999999999998843   222    36789999998888     555 88888999888654

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.73  E-value=1.6  Score=24.77  Aligned_cols=33  Identities=27%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      +.|....+.|..+-..|+.++|+.+|++++..-
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l   38 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLREL   38 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence            567788889999989999999999999998753

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.27  E-value=12  Score=31.60  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=65.5

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +.....-.+.|..+...|+|.+|+++|+.+|-.-|-..-      .  .......+.+.+..         -.-+-.|..
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vv------d--~~~e~aea~~li~i---------~~eYi~gL~ 1050 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVV------D--SKEEEAEADELIKI---------CREYIVGLS 1050 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEe------c--chhhHHHHHHHHHH---------HHHHHhhhe
Confidence            344566678899999999999999999998866553100      0  00000000000000         000111111


Q ss_pred             H------hhhccHHHH--HHHHHHHHhcCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           83 F------LKLGKFEES--IKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        83 ~------~~~~~~~~A--~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .      +..+..+.+  +..|=.-..+.|-+. .++...-.++++++++..|...-++.+++.|..+.+..
T Consensus      1051 ~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1051 VELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred             eeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence            0      011223333  111112223344332 23333345688899999999999999999988765543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.18  E-value=4.1  Score=30.90  Aligned_cols=100  Identities=10%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CChHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP---SNNQAKRT  146 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~  146 (186)
                      ..++-.+|.-|...|+++.|+.+|.++-..-.   .-...+.++-.+-...|++..-..+..++.+.-.   +-......
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            46788899999999999999999999554322   2345677777778888999888888888876420   11111111


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhc
Q 044796          147 ILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       147 l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ...|+..+.+..+++|..|..+|-.+
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            23455556666678888888877554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.13  E-value=2.9  Score=35.42  Aligned_cols=90  Identities=11%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHh----c---CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKL----E---HFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ...++..-+.|++|+..|++.-...|.-   -++.++.|.++...    |   .+++|+..|++... .|.-|--+...+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence            3456677788999999999999988865   46788888886643    2   46777777776543 455565566666


Q ss_pred             HHHHHHHHHhhccccccchhhhhccc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      .+|..     ++++++=+++|..++.
T Consensus       560 ~~~~~-----~~~~~~~~~~~~~~~~  580 (932)
T PRK13184        560 LVYQR-----LGEYNEEIKSLLLALK  580 (932)
T ss_pred             HHHHH-----hhhHHHHHHHHHHHHH
Confidence            67777     8888888888887753

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=87.02  E-value=5.9  Score=25.21  Aligned_cols=120  Identities=16%  Similarity=0.056  Sum_probs=63.0

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccch------------------hhh---hcCchhHHHhhCCCcchhH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAP------------------EAK---EGQSASEKKEVAPAPEMAE   70 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~   70 (186)
                      -|...+-.|..++..+...+.....+-...-|.-.-.                  ++.   -+.............    
T Consensus         8 eAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n----   83 (161)
T PF09205_consen    8 EAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN----   83 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----
T ss_pred             HHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc----
Confidence            3555677888899999998888776655444442211                  110   011111111110000    


Q ss_pred             HHHHHHHHHHHHH-hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           71 LRSICHSNRGICF-LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        71 ~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                       ...-+..+|.-. ..+|+-++-...++...+.+..+|..+..+|.+|.++|+..+|-+.+++|.+.
T Consensus        84 -~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   84 -KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             ----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             -chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence             012334444333 33455555555555555555567889999999999999999999999998764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF12854 PPR_1: PPR repeat

Probab=86.84  E-value=2  Score=19.72  Aligned_cols=23  Identities=13%  Similarity=0.036  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHH
Q 044796          109 ALIRRAEAHEKLEHFEEAIADMK  131 (186)
Q Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~  131 (186)
                      .|..+-..+.+.|+.++|.+.|+
T Consensus         9 ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    9 TYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
Confidence            44444455555555555555554

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.67  E-value=2.8  Score=23.37  Aligned_cols=34  Identities=38%  Similarity=0.410  Sum_probs=28.2

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA   36 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   36 (186)
                      ++.+..+...|...=..|++++|+.+|..+++..
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l   36 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYL   36 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4567777888888888999999999999998753

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.57  E-value=3.2  Score=22.67  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      .+...|.-.-..|++++|+.+|..+++
T Consensus         7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    7 ELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344455555555666666555555554

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.57  E-value=13  Score=27.71  Aligned_cols=75  Identities=15%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      -+-.+++.......-.+.++...+.....  =..+...+--.|..+.++|+.++|...|.+++.+.++..+..+...
T Consensus       330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~  406 (415)
T COG4941         330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            44456666665555566666666655543  1234446667899999999999999999999999998777655444

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.54  E-value=17  Score=29.12  Aligned_cols=114  Identities=17%  Similarity=0.111  Sum_probs=75.8

Q ss_pred             HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796           18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT   97 (186)
Q Consensus        18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   97 (186)
                      +...|++|...|.-+....+.+.-..                     .....|+....+..++.+...+|+.+-|.....
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~---------------------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLie  308 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLI---------------------LLISSPYHVDSLLQVADIFRFQGDREMAADLIE  308 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceee---------------------eeccCCcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence            45678899988888877654432111                     111225566888888999999998887777777


Q ss_pred             HHHhc-----Cc----------------ccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Q 044796           98 KALEL-----NP----------------TYM---KALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTILRKLK  152 (186)
Q Consensus        98 ~al~~-----~p----------------~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  152 (186)
                      ++|-.     .|                .+-   .+++..=..+.+.|-+..|+++.+-.++++|. +|-+...+...+.
T Consensus       309 R~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A  388 (665)
T KOG2422|consen  309 RGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA  388 (665)
T ss_pred             HHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence            76632     12                121   23344445567888999999999999999998 7766555555443

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.51  E-value=6.8  Score=24.46  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .+-.+|...++.+++-.++-+|++|+.+..+-....           ..+       ..+.........-++|..+..+|
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~-----------~~e-------l~dll~i~VisCHNLA~FWR~~g   64 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESN-----------EIE-------LEDLLTISVISCHNLADFWRSQG   64 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccc-----------ccc-------HHHHHHHHHHHHhhHHHHHHHcC
Confidence            356788999999999999999999998755410000           000       00000112245568899999999


Q ss_pred             cHHHHHHHHHHHHh
Q 044796           88 KFEESIKECTKALE  101 (186)
Q Consensus        88 ~~~~A~~~~~~al~  101 (186)
                      +.+=.+.+++-|-+
T Consensus        65 d~~yELkYLqlASE   78 (140)
T PF10952_consen   65 DSDYELKYLQLASE   78 (140)
T ss_pred             ChHHHHHHHHHHHH
Confidence            98888888876654

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=85.34  E-value=15  Score=28.16  Aligned_cols=103  Identities=10%  Similarity=-0.014  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-----c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELN-----P-TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .+..|+.+..++...|+...-...+...+...     . ........+=..|...+.|+.|-....+..-  |+... ..
T Consensus       168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~s-nn  244 (493)
T KOG2581|consen  168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAAS-NN  244 (493)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccc-cH
Confidence            45788889999999998776666665555431     1 2233455566778888999999888777752  32211 11


Q ss_pred             HHHHHHHHHHHH--hhccccccchhhhhcccCCC
Q 044796          146 TILRKLKEMGNS--ILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       146 ~l~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~  177 (186)
                      ..++.+.-+|..  ++.+|..|.++|-+++...|
T Consensus       245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            223333335543  59999999999988864434

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.96  E-value=2  Score=24.12  Aligned_cols=15  Identities=13%  Similarity=0.208  Sum_probs=7.2

Q ss_pred             cCHHHHHHHHHHHHh
Q 044796          121 EHFEEAIADMKKILE  135 (186)
Q Consensus       121 g~~~~A~~~~~~al~  135 (186)
                      |+|++|+..|..+++
T Consensus        20 ~~y~eA~~~Y~~~i~   34 (75)
T cd02677          20 GDYEAAFEFYRAGVD   34 (75)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            445554444444443

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=84.88  E-value=2.2  Score=18.47  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=12.5

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHH
Q 044796           77 SNRGICFLKLGKFEESIKECTKAL  100 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al  100 (186)
                      ..+-..+.+.|++++|...+++-.
T Consensus         4 ~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    4 NSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHh
Confidence            334445555555555555555543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=84.86  E-value=6.2  Score=31.53  Aligned_cols=58  Identities=12%  Similarity=0.029  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK  131 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (186)
                      .+......|..+..-+..++|-.+|++.+..+|+  ++++..+.-+.+.|-...|...+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   98 (578)
T PRK15490         41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK   98 (578)
T ss_pred             hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence            4455666777777788888888888888888877  667777777888888777777776

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.62  E-value=26  Score=30.48  Aligned_cols=60  Identities=10%  Similarity=0.081  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +..|..+|.+..+.|...+|+..|-+     .++|..+...-.+..+.|.|++=+.++.-+.+.-
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence            48899999999999999999998865     3677788888888999999999999888887643

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=84.35  E-value=12  Score=26.30  Aligned_cols=33  Identities=6%  Similarity=0.033  Sum_probs=27.8

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVP   39 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   39 (186)
                      +.+..+|....+.|+|++.+.++++++..+|..
T Consensus         2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL   34 (236)
T PF00244_consen    2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPEL   34 (236)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence            356778999999999999999999999998764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=84.29  E-value=15  Score=27.41  Aligned_cols=108  Identities=26%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchh-HHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMA-ELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~   84 (186)
                      +..-.+-|..+....+|..|..+|-+|++-+..-                          .... ...+--|..+..+-.
T Consensus       209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--------------------------~~~v~A~~sLKYMlLcKIMl  262 (411)
T KOG1463|consen  209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--------------------------DDDVKALTSLKYMLLCKIML  262 (411)
T ss_pred             HHHHHhccceeecccccchHHHHHHHHHcccccc--------------------------CCcHHHHHHHHHHHHHHHHh
Confidence            3444555666677788999999988888765541                          1110 001122333444443


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHhcCCC
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHE--KLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~  139 (186)
                      ..-+--.++-.-+.+++.+..+..+....+.++.  .+.+|+.|+..|..-+.-||-
T Consensus       263 n~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  263 NLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             cCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            3334445566666777777777788887777765  455888888888888876654

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=84.15  E-value=16  Score=27.50  Aligned_cols=48  Identities=13%  Similarity=0.036  Sum_probs=42.4

Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      .+..-+|+..++.++..+|.+......+..+|..+|-...|...|...
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            345678999999999999999999999999999999999999988543

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=84.14  E-value=11  Score=25.58  Aligned_cols=158  Identities=13%  Similarity=0.073  Sum_probs=90.8

Q ss_pred             HHHHHHHhHhHHH-HcccHHHHHHHHHHHHhccCCChhhhhccchhhhh---cC---chhHHHhhC--CCcchhHHHHHH
Q 044796            5 EANEAKLEGNKLF-AEGKYEEALLQYEVALRVASVPERAESASAPEAKE---GQ---SASEKKEVA--PAPEMAELRSIC   75 (186)
Q Consensus         5 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~---~~~~~~~~~--~~~~~~~~~~~~   75 (186)
                      .++....+|.-+. -.++|++|...|..--..+. ++..-+-+|.....   +.   ...+...+.  ....    .+.+
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n----~~~a  107 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN----IPQA  107 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----CHHH
Confidence            4566666775554 35689999999988766543 34444444443311   11   122222211  1111    2366


Q ss_pred             HHHHHHHHhhh-----c--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------------hcCHH
Q 044796           76 HSNRGICFLKL-----G--KFEESIKECTKALELNPTYMKALIRRAEAHEK------------------------LEHFE  124 (186)
Q Consensus        76 ~~~~a~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------------~g~~~  124 (186)
                      ...+|.++..-     +  +.++|..++.++...+.  ..+-+.++-.+..                        ..+.+
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~--~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd  185 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED--GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD  185 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC--chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence            66777776542     2  36788999998887643  3333444433333                        24667


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          125 EAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       125 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      .|+++--+|.+++  ++.+.-++++.+ .+|+-+.++-++|..+-+++
T Consensus       186 ka~qfa~kACel~--~~~aCAN~SrMy-klGDGv~Kde~~Aekyk~rA  230 (248)
T KOG4014|consen  186 KALQFAIKACELD--IPQACANVSRMY-KLGDGVPKDEDQAEKYKDRA  230 (248)
T ss_pred             HHHHHHHHHHhcC--ChHHHhhHHHHH-HccCCCCccHHHHHHHHHHH
Confidence            7887777777664  456666666544 45776666777777766555

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.07  E-value=13  Score=30.98  Aligned_cols=27  Identities=11%  Similarity=0.137  Sum_probs=18.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVA   32 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~a   32 (186)
                      .+.+-..|..+-+..++++|++||++.
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkg  687 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKG  687 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcc
Confidence            344445566777777888888888763

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.00  E-value=1.1  Score=33.00  Aligned_cols=52  Identities=17%  Similarity=0.318  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF  123 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  123 (186)
                      ...+++.++..+....++++|++....+....|.+..+...+..+-....++
T Consensus       308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            3478899999999999999999999999999999988776666555444443

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=83.65  E-value=2.8  Score=26.00  Aligned_cols=31  Identities=39%  Similarity=0.583  Sum_probs=27.2

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVP   39 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   39 (186)
                      ...+|..+...|++++|..+|-.|+...|+.
T Consensus        66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP   96 (121)
T PF02064_consen   66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQP   96 (121)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence            4568999999999999999999999999983

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.64  E-value=11  Score=31.03  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=18.2

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHH
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVA   32 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a   32 (186)
                      .++.++|..+.....|++|.++|...
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667777777777777777777654

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.38  E-value=8.7  Score=24.00  Aligned_cols=67  Identities=15%  Similarity=0.040  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHH----Hhc
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPT---------------YMKALIRRAEAHEKLEHFEEAIADMKKI----LEF  136 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~  136 (186)
                      +..+|...++.+++-.++-+|++|+.+..+               ....-.++|..+...|+.+=.+++++-|    +.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            356788888888888899999988865321               1234678999999999999999988655    556


Q ss_pred             CCCChH
Q 044796          137 DPSNNQ  142 (186)
Q Consensus       137 ~p~~~~  142 (186)
                      -|..+.
T Consensus        84 iPQCp~   89 (140)
T PF10952_consen   84 IPQCPN   89 (140)
T ss_pred             ccCCCC
Confidence            676553

>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.31  E-value=4.1  Score=24.32  Aligned_cols=38  Identities=8%  Similarity=-0.092  Sum_probs=33.4

Q ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796          106 YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      -|..+..+|.+|...|+.+.|.+.|+.--.+.|++...
T Consensus        71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f  108 (121)
T COG4259          71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF  108 (121)
T ss_pred             CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence            36688899999999999999999999999999987643

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=83.06  E-value=8  Score=23.35  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=12.7

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhc
Q 044796           77 SNRGICFLKLGKFEESIKECTKALEL  102 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~  102 (186)
                      ...|......|++..|.+...++-+.
T Consensus        63 l~~Gl~al~~G~~~~A~k~~~~a~~~   88 (108)
T PF07219_consen   63 LSRGLIALAEGDWQRAEKLLAKAAKL   88 (108)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            33444444455555555555555443

These are membrane protein involved in a late step of protoheme IX synthesis [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.60  E-value=4.3  Score=22.89  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL  102 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~  102 (186)
                      ..+...|.-.-..|+|++|+.+|..+++.
T Consensus         7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           7 VQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34455566666667777777766666653

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.36  E-value=19  Score=27.28  Aligned_cols=67  Identities=18%  Similarity=0.083  Sum_probs=44.8

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ......+..++..++|..|...+......-|....                             .........|..++..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-----------------------------~~~~~~l~~~y~~WD~  182 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE-----------------------------YQRYKDLCEGYDAWDR  182 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-----------------------------HHHHHHHHHHHHHHHc
Confidence            34556777889999999999999998885333111                             0112223345555667


Q ss_pred             ccHHHHHHHHHHHHhc
Q 044796           87 GKFEESIKECTKALEL  102 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~  102 (186)
                      -++.+|...++..+..
T Consensus       183 fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  183 FDHKEALEYLEKLLKR  198 (379)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            7788888888887764

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.15  E-value=10  Score=28.25  Aligned_cols=89  Identities=20%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------------
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP------------------  138 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------  138 (186)
                      +.+-+...+..+..+-++....++++||....++..++.-  ..--..+|...|+++++...                  
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            3444555566777888899999999999999888877643  22234556666666665321                  


Q ss_pred             -----CCh--HHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          139 -----SNN--QAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       139 -----~~~--~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                           .+.  -+...++.|-++     +|+..+|++.|...
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARk-----lGrlrEA~K~~RDL  301 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARK-----LGRLREAVKIMRDL  301 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHH-----hhhHHHHHHHHHHH
Confidence                 111  123344544444     78888888877644

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.45  E-value=16  Score=25.59  Aligned_cols=62  Identities=11%  Similarity=0.080  Sum_probs=49.0

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES   92 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   92 (186)
                      ...+++.+..++|+...+.-++..|.+.                                 .....+=..+...|+|++|
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda---------------------------------~~RhflfqLlcvaGdw~kA   54 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDA---------------------------------GGRHFLFQLLCVAGDWEKA   54 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccc---------------------------------cchhHHHHHHhhcchHHHH
Confidence            3467788999999999999999999843                                 3333344566778999999


Q ss_pred             HHHHHHHHhcCcccH
Q 044796           93 IKECTKALELNPTYM  107 (186)
Q Consensus        93 ~~~~~~al~~~p~~~  107 (186)
                      ...++-+-++.|++.
T Consensus        55 l~Ql~l~a~l~p~~t   69 (273)
T COG4455          55 LAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHhhcCcccc
Confidence            999999999988764

>smart00671 SEL1 Sel1-like repeats

Probab=81.24  E-value=3.9  Score=18.50  Aligned_cols=29  Identities=21%  Similarity=0.101  Sum_probs=22.7

Q ss_pred             HHHHHhHhHHHHc----ccHHHHHHHHHHHHhc
Q 044796            7 NEAKLEGNKLFAE----GKYEEALLQYEVALRV   35 (186)
Q Consensus         7 ~~~~~~g~~~~~~----~~~~~A~~~~~~al~~   35 (186)
                      .+.+.+|..+...    .+..+|+.+|+++.+.
T Consensus         2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~   34 (36)
T smart00671        2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL   34 (36)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence            4677888887653    4899999999998764

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.56  E-value=19  Score=30.12  Aligned_cols=136  Identities=17%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCC--CcchhHHHHHHHHHHHHHHhhhccH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP--APEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      -|..+...|+++.|+.+|-++-.+-..-   -.+++.       .+..+++..  ..+........|-..+.-|...|+|
T Consensus       712 wg~hl~~~~q~daainhfiea~~~~kai---eaai~a-------kew~kai~ildniqdqk~~s~yy~~iadhyan~~df  781 (1636)
T KOG3616|consen  712 WGDHLEQIGQLDAAINHFIEANCLIKAI---EAAIGA-------KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDF  781 (1636)
T ss_pred             HhHHHHHHHhHHHHHHHHHHhhhHHHHH---HHHhhh-------hhhhhhHhHHHHhhhhccccccchHHHHHhccchhH
Confidence            4667778888999988886653321110   000000       001111100  0111111235666788889999999


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhhccccccchh
Q 044796           90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ-AKRTILRKLKEMGNSILGRFGMSTDN  168 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~A~~~  168 (186)
                      +-|...|.++=..+    .    .-..|-+.|++++|.+.-.++..  |+... .+...+.-+..     .|+|.+|...
T Consensus       782 e~ae~lf~e~~~~~----d----ai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedlde-----hgkf~eaeql  846 (1636)
T KOG3616|consen  782 EIAEELFTEADLFK----D----AIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDE-----HGKFAEAEQL  846 (1636)
T ss_pred             HHHHHHHHhcchhH----H----HHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHh-----hcchhhhhhe
Confidence            99988887754321    1    23445677888888777766643  44332 22333333333     6777777766


Q ss_pred             hhhc
Q 044796          169 FKAV  172 (186)
Q Consensus       169 ~~~~  172 (186)
                      |-.+
T Consensus       847 yiti  850 (1636)
T KOG3616|consen  847 YITI  850 (1636)
T ss_pred             eEEc
Confidence            6444

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=80.54  E-value=4  Score=18.17  Aligned_cols=26  Identities=38%  Similarity=0.243  Sum_probs=14.4

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796          127 IADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus       127 ~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      +.....++..+|.+..+|...-.++.
T Consensus         3 l~~~~~~l~~~pknys~W~yR~~ll~   28 (31)
T PF01239_consen    3 LEFTKKALEKDPKNYSAWNYRRWLLK   28 (31)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcccccHHHHHHHHHH
Confidence            44455556666666666655554443

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PF15469 Sec5: Exocyst complex component Sec5

Probab=80.33  E-value=15  Score=24.54  Aligned_cols=27  Identities=19%  Similarity=0.227  Sum_probs=16.8

Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796          121 EHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus       121 g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ...++........++++|+...+|..+
T Consensus       153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l  179 (182)
T PF15469_consen  153 SSQEEFLKLIRKLLELNVEEDPIWYWL  179 (182)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            345566666666677777666666554

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.15  E-value=20  Score=25.99  Aligned_cols=138  Identities=16%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHH-HHHhhhccH
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRG-ICFLKLGKF   89 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~   89 (186)
                      .-+..+.-..||..|+...+++++.-.++...--..+..                   .... -.++..| +++..+++|
T Consensus        40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~-------------------~evK-~sLcvvGIQALAEmnrW   99 (309)
T PF07163_consen   40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSS-------------------LEVK-CSLCVVGIQALAEMNRW   99 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccch-------------------hhhh-hhhhhhhHHHHHHHhhH
Confidence            345666778899999999999988653321111000000                   0000 2333333 566778999


Q ss_pred             HHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHhhccccccc
Q 044796           90 EESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA--KRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      .+++.+.-+-.+.-.+- ++++-..-..|.+.|++...++.-..-+. +|+|...  +..++..+..---.-+|.+++|.
T Consensus       100 reVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAe  178 (309)
T PF07163_consen  100 REVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAE  178 (309)
T ss_pred             HHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHH
Confidence            99998888877654333 34444444557788888877766655554 5665322  44444443322222377777777


Q ss_pred             hhh
Q 044796          167 DNF  169 (186)
Q Consensus       167 ~~~  169 (186)
                      +..
T Consensus       179 elv  181 (309)
T PF07163_consen  179 ELV  181 (309)
T ss_pred             HHH
Confidence            655

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-13
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-13
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-10
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-09
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-07
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		4e-08
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		4e-08
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		6e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		6e-08
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		6e-08
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		9e-08
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-07
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		6e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-06
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		1e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-05
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-05
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-05
1wao_1	477	Pp5 Structure Length = 477		3e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-04
3as8_A	186	Mama Msr-1 P41212 Length = 186		1e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-04
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		4e-04
3asd_A	200	Mama R50e Mutant Length = 200		4e-04
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		4e-04
3as4_A	186	Mama Amb-1 C2221 Length = 186		5e-04
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		5e-04
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		5e-04
3asg_A	186	Mama D159k Mutant 2 Length = 186		8e-04

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEV 62
           L ++   K  G   F EGKY++ALLQY+  +                  E   ++E+ + 
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-------------ESSFSNEEAQK 190
Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
           A A     LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 191 AQA-----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 245
Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
           FE A AD +K+L+  P+N  AK  +
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQL 270

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEV 62
           L ++   K  G   F EGKY++ALLQY+  +                  E   ++E+ + 
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-------------ESSFSNEEAQK 190
Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
           A A     LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 191 AQA-----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245
Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
           FE A AD +K+L+  P+N  AK  +
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQL 270

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 13  GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELR 72
           GN  F    +E A+ +Y   LR                 EG  A+   E A   ++  + 
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYV---------------EGSRAA--AEDADGAKLQPVA 272
Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
             C  N G C LK+  ++ ++  C +ALE++P+  KAL RRA+  + L+ +++A+AD+KK
Sbjct: 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
Query: 133 ILEFDPSNNQAKRTILR 149
             E  P +   +  +L+
Sbjct: 333 AQEIAPEDKAIQAELLK 349

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + K G ++++I+   KALEL+P   KA  RR  A+ K   +++AI D +K LE D
Sbjct: 48  NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Query: 138 PSNNQAKRTI 147
           P+N +AK+ +
Sbjct: 108 PNNAKAKQNL 117

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEV 62
           +  A+  K++GN LF E K EEA+ QYE+A+                    Q   + +++
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLYGKYQDM 224
Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKAL---ELNPTYMKALIRRAEAHEK 119
           A A     +++ CH N   C +KL +++E+I  C   L   E NP   KAL RR +A  +
Sbjct: 225 ALA-----VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---KALFRRGKAKAE 276
Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
           L   + A  D +K  ++ P +++A R  LR L E
Sbjct: 277 LGQMDSARDDFRKAQKYAP-DDKAIRRELRALAE 309

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 30/129 (23%)
Query: 12  EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
           EGN+LF  G Y  AL  Y  AL                   G  A+ + +          
Sbjct: 34  EGNELFKCGDYGGALAAYTQAL-------------------GLDATPQDQ---------- 64
Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
            ++ H NR  C LKL  ++++  E +KA+E +   +KAL RR++A EKL   ++A+ D++
Sbjct: 65  -AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQ 123
Query: 132 KILEFDPSN 140
           + +  +P N
Sbjct: 124 RCVSLEPKN 132

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 13  GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL                                P  AE  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELD-----------------------------PNNAE-- 44
Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K
Sbjct: 45  --AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Query: 133 ILEFDPSNNQAKRTILRKLKEMG 155
            LE DP+N +AK+ +    ++ G
Sbjct: 103 ALELDPNNAEAKQNLGNAKQKQG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE D
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 138 PSNNQAKRTILRKLKEMGN 156
           P+N +A   +     + G+
Sbjct: 74  PNNAEAWYNLGNAYYKQGD 92

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  FE A  D +K+LE +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 138 PSNNQAKRTIL 148
           P N  A+  I 
Sbjct: 382 PQNKAARLQIF 392

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  FE A  D +K+LE +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 138 PSNNQAKRTI 147
           P N  A+  I
Sbjct: 382 PQNKAARLQI 391

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE D
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 138 PSNNQAKRTILRKLKEMG 155
           P+N +AK+ +    ++ G
Sbjct: 74  PNNAEAKQNLGNAKQKQG 91

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 74  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
           + +SN   C++  G  E+ I+  TKALE+ P + KAL+RRA A+E L +F +A+ D+
Sbjct: 56  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 112

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 74  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
           + +SN   C++  G  E+ I+  TKALE+ P + KAL+RRA A+E L +F +A+ D+
Sbjct: 60  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 33/132 (25%)
Query: 12  EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
           +GN+ F +G Y +A+  Y  A++                               P+ A+L
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRN-----------------------------PKDAKL 52
Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
               +SNR  C+ KL +F+ ++K+C + ++L PT++K   R+A A E ++ + +A+   +
Sbjct: 53  ----YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108
Query: 132 KILEFDPSNNQA 143
           K L+ D S  +A
Sbjct: 109 KALDLDSSCKEA 120

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 74  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
           + +SN   C++ +G  ++ ++  TKALEL P Y K L+RRA A+E L  F +A+ D+
Sbjct: 40  VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           A E+    ++   NR   + KLG +  ++++C +A+ ++P Y KA  R   A   L    
Sbjct: 38  AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV 97
Query: 125 EAIADMKKILEFDPSNNQAKRTI 147
           EA+A  KK LE DP N   K  +
Sbjct: 98  EAVAYYKKALELDPDNETYKSNL 120

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 6   ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
           A E K +GN+ F +G Y  A+  Y  A++                               
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----------------------------- 43
Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           PE A    I +SNR  C  KL +F+ ++ +C   + L+  ++K  IR+A     +  + +
Sbjct: 44  PENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSK 99
Query: 126 AIADMKKILEFDPSNNQAK---RTILR 149
           A    +  L+ DPSN +A+   R  LR
Sbjct: 100 AQRAYEDALQVDPSNEEAREGVRNCLR 126

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 13  GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXX-XXXXXKEGQSASEKKEVAPAPEMAEL 71
           GN  + +G Y+EA+  Y+ AL                  K+G      +    A E+   
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
            +    N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 132 KILEFDP 138
           K LE DP
Sbjct: 128 KALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE D
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 138 PSNNQAKRTILRKLKEMGN 156
           P + +A   +     + G+
Sbjct: 66  PRSAEAWYNLGNAYYKQGD 84

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 33/135 (24%)
Query: 13  GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL                                P  AE  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELY-----------------------------PNNAE-- 44
Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N G  + K G ++E+I+   KALEL P   +A      A+ K   ++EAI   +K
Sbjct: 45  --AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Query: 133 ILEFDPSNNQAKRTI 147
            LE  P+N +AK+ +
Sbjct: 103 ALELYPNNAEAKQNL 117

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + K G ++E+I+   KALEL P   +A      A+ K   ++EAI   +K LE  
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 138 PSNNQAKRTILRKLKEMGN 156
           P+N +A   +     + G+
Sbjct: 74  PNNAEAWYNLGNAYYKQGD 92

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 33/127 (25%)
Query: 6   ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
           A E K +GN+LF   KY EA   Y                       G++ +    VA  
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACY-----------------------GRAITRNPLVA-- 43
Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
                   + ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++E
Sbjct: 44  --------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 95
Query: 126 AIADMKK 132
           AIA++++
Sbjct: 96  AIANLQR 102

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 33/127 (25%)
Query: 6   ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
           A E K +GN+LF   KY EA   Y                       G++ +    VA  
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACY-----------------------GRAITRNPLVA-- 38
Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
                   + ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++E
Sbjct: 39  --------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90
Query: 126 AIADMKK 132
           AIA++++
Sbjct: 91  AIANLQR 97

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE D
Sbjct: 8   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 138 P 138
           P
Sbjct: 68  P 68

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
           +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ +  A+
Sbjct: 41  YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           A E+    +I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L  F 
Sbjct: 39  AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 98
Query: 125 EAIADMKKILEFDPSNNQAK 144
            A+ D + +++  P +  AK
Sbjct: 99  AALRDYETVVKVKPHDKDAK 118

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           APE A      +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ + 
Sbjct: 169 APEDAR----GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224
Query: 125 EAIA--DMKKILEFDPSNNQAKRTI 147
            A+   D  +  + + +N  + R I
Sbjct: 225 SALETLDAARTKDAEVNNGSSAREI 249

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           A E+    +I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L  F 
Sbjct: 32  AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91
Query: 125 EAIADMKKILEFDPSNNQAK 144
            A+ D + +++  P +  AK
Sbjct: 92  AALRDYETVVKVKPHDKDAK 111

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 66  PEMAE--LRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
           P +AE  +RS   ICH     CF K  K  E+I+ C++ L++ P  + AL  RAEA+   
Sbjct: 288 PSIAEYTVRSKERICH-----CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342
Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
           E ++EAI D +   E + ++ Q +
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIR 366

>pdb|3AS8|A Chain A, Mama Msr-1 P41212 Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 59  KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
           ++ +A AP+  ++ ++     G+ ++++ K++ ++    K  E NP       R   A +
Sbjct: 66  ERSIADAPDNIKVATVL----GLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALD 121
Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
            L  F+EAI   K  L   P+  +  R I    ++MG+
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 66  PEMAE--LRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
           P +AE  +RS   ICH     CF K  K  E+I+ C++ L+  P  + AL  RAEA+   
Sbjct: 288 PSIAEYTVRSKERICH-----CFSKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIE 342
Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
           E ++EAI D +   E + ++ Q +
Sbjct: 343 EXYDEAIQDYETAQEHNENDQQIR 366

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 12  EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
           EGN+L+ EG  +EA  +Y  A+                        + KE   +PE  +L
Sbjct: 20  EGNRLYREGHVKEAAAKYYDAIACLKNL------------------QMKEQPGSPEWIQL 61
Query: 72  RSICHS---NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
                    N   C L + ++ E +  C+  L      +KA  +R +AH  + + +EA A
Sbjct: 62  DQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQA 121
Query: 129 DMKKILEFDPS 139
           D  K+LE DP+
Sbjct: 122 DFAKVLELDPA 132

>pdb|3ASD|A Chain A, Mama R50e Mutant Length = 200

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 59  KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
           ++ +A AP+  ++ ++     G+ ++++ K++ ++    K  E NP       R   A +
Sbjct: 66  ERSLADAPDNVKVATVL----GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155
            L  F+EAI   K  L   P+  +  R I    ++MG
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 74  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133
           + +SNR   + K G ++++ ++  K ++L P + K   R+A A E L  FEEA    ++ 
Sbjct: 39  VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98
Query: 134 LEFDPSNNQAKRTI 147
           L+ + +N Q K  +
Sbjct: 99  LKHEANNPQLKEGL 112

>pdb|3AS4|A Chain A, Mama Amb-1 C2221 Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 60  KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
           + +A AP+  ++ ++     G+ ++++ K++ ++    K  E NP       R   A + 
Sbjct: 67  RSLADAPDNVKVATVL----GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155
           L  F+EAI   K  L   P+  +  R I    ++MG
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 12  EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
           EGN+L+ EG  +EA  +Y  A+                        + KE   +PE  +L
Sbjct: 14  EGNRLYREGHVKEAAAKYYDAIACLKNL------------------QMKEQPGSPEWIQL 55
Query: 72  RSICHS---NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
                    N   C L + ++ E +  C+  L      +KA  +R +AH  + + +EA A
Sbjct: 56  DQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQA 115
Query: 129 DMKKILEFDPS 139
           D  K+LE DP+
Sbjct: 116 DFAKVLELDPA 126

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 66  PEMAE--LRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
           P +AE  +RS   ICH     CF K  K  E+I+ C++ L+  P  + AL  RAEA+   
Sbjct: 265 PSVAEYTVRSKERICH-----CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIE 319
Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
           E ++EAI D +   E + ++ Q +
Sbjct: 320 EXYDEAIQDYEAAQEHNENDQQIR 343

>pdb|3ASG|A Chain A, Mama D159k Mutant 2 Length = 186

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 60  KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
           + +A AP+  ++ ++     G+ ++++ K++ ++    K  E NP       R   A + 
Sbjct: 67  RSLADAPDNVKVATVL----GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKN 122
Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155
           L  F+EAI   K  L   P+  +  R I    ++MG
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-35
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-34
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-30
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-30
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-30
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-30
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	9e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-24
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-22
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-10
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	8e-04

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  121 bits (305), Expect = 1e-35
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L      + +GN+LF +  Y+EA+  Y  AL         E    PE  E          
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE---------- 57

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                +       ++N   C+L +G   E+ +  ++ L+   T  KAL RRA+A      
Sbjct: 58  -----LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
            +EA  D+K +L   P+        ++ + E
Sbjct: 113 LDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  117 bits (296), Expect = 2e-34
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 30/149 (20%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
              +   + + EGN+LF  G Y  AL  Y  AL + + P+                    
Sbjct: 23  PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------------------- 62

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                      +++ H NR  C LKL  ++++  E +KA+E +   +KAL RR++A EKL
Sbjct: 63  ----------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILR 149
              ++A+ D+++ +  +P N   +  +  
Sbjct: 113 GRLDQAVLDLQRCVSLEPKNKVFQEALRN 141

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 36  ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKE 95
            S      + S P   E + A+            +LR       G    K G +  ++  
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSV-----EQLR-----KEGNELFKCGDYGGALAA 50

Query: 96  CTKALELNPTYMKALIR---RAEAHEKLEHFEEAIADMKKILEFDPSN 140
            T+AL L+ T     +    RA  H KLE +++A  +  K +E D  +
Sbjct: 51  YTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  109 bits (274), Expect = 3e-31
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 33/153 (21%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           + A   K +GN+ F +G Y +A+  Y  A++    P+ A                     
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDA--------------------- 50

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                       +SNR  C+ KL +F+ ++K+C + ++L PT++K   R+A A E ++ +
Sbjct: 51  ----------KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100

Query: 124 EEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
            +A+   +K L+ D S  +A     R +    N
Sbjct: 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  107 bits (270), Expect = 1e-30
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 33/149 (22%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
             A E K +GN+ F +G Y  A+  Y  A++    PE A                     
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENA--------------------- 47

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                     I +SNR  C  KL +F+ ++ +C   + L+  ++K  IR+A     +  +
Sbjct: 48  ----------ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW 97

Query: 124 EEAIADMKKILEFDPSNNQAKRTILRKLK 152
            +A    +  L+ DPSN +A+  +   L+
Sbjct: 98  SKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 57  SEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 116
           S  +     PE+A+       N+G  + K G +  +++   +A++ +P        RA  
Sbjct: 1   SNARLAYINPELAQE----EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAAC 56

Query: 117 HEKLEHFEEAIADMKKILEFDPSN 140
             KL  F+ A+ D    +  D   
Sbjct: 57  LTKLMEFQRALDDCDTCIRLDSKF 80

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  109 bits (274), Expect = 1e-30
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           +  A + K EGN+ F + +  EA+++Y+ AL                        E  + 
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-----------------HTEEWDDQ 77

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
               +   +   C+ N   C+ K   + ++I   +K L+++   +KAL +   A+     
Sbjct: 78  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILR 149
            EEA  ++ K    +P+N   + +   
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYEL 164

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  106 bits (267), Expect = 2e-30
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 33/140 (23%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           +A EA+LEG + F +  +  A+  Y   ++ A  PE A                      
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDA---------------------- 38

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
                      +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ + 
Sbjct: 39  ---------RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 89

Query: 125 EAIADMKKILEFDPSNNQAK 144
            A+  +      D   N   
Sbjct: 90  SALETLDAARTKDAEVNNGS 109

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  106 bits (266), Expect = 3e-30
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 34/151 (22%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           + + NE K +GNK  + G  ++AL  Y  A+++                           
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLD-------------------------- 34

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
              P       + +SNR   + K G ++++ ++  K ++L P + K   R+A A E L  
Sbjct: 35  ---PHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
           FEEA    ++ L+ + +N Q K   L+ ++ 
Sbjct: 88  FEEAKRTYEEGLKHEANNPQLKEG-LQNMEA 117

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  109 bits (275), Expect = 2e-29
 Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L ++   K  G   F EGKY++ALLQY+  +          +  A +A+           
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA---------- 193

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                   LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 194 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
           FE A AD +K+L+  P+N  AK   L   ++
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQ-LAVCQQ 275

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  102 bits (257), Expect = 9e-29
 Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 36/153 (23%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
            EA   K EGN+      +E A+  Y  A+ +                            
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------------------- 42

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
             P  A        NR   + KLG +  ++++C +A+ ++P Y KA  R   A   L   
Sbjct: 43  --PANAVY----FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH 96

Query: 124 EEAIADMKKILEFDPSNNQAK---RTILRKLKE 153
            EA+A  KK LE DP N   K   +    KL+E
Sbjct: 97  VEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  101 bits (254), Expect = 3e-28
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 34/150 (22%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
            A E K +GN+LF   KY EA   Y  A+                               
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---------------------------- 39

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
            P +A    + ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++
Sbjct: 40  -PLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 94

Query: 125 EAIADMKKILEFDPSNNQA-KRTILRKLKE 153
           EAIA++++               I   L+ 
Sbjct: 95  EAIANLQRAYSLAKEQRLNFGDDIPSALRI 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%)

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
            P M    +     +G       K+ E+     +A+  NP        RA  + K++  E
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 125 EAIADMKKILEFDPSN 140
           +A+AD ++ LE D  +
Sbjct: 61  QALADCRRALELDGQS 76

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  103 bits (258), Expect = 9e-27
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 29/157 (18%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           K + + N+      +L  +G+Y +A  +YE  ++                          
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE------------------------ 264

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P +AE           CF K  K  E+I+ C++ L++ P  + AL  RAEA+   
Sbjct: 265 -----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157
           E ++EAI D +   E + ++ Q +  + +  + +  S
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 86.6 bits (215), Expect = 9e-21
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 33/140 (23%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           +  +    G KL A G+  +AL Q+  A+                               
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGD---------------------------- 33

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
            P+        +  R   FL +GK + ++ + TK + L   +  A ++R     K    +
Sbjct: 34  -PDNYI----AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88

Query: 125 EAIADMKKILEFDPSNNQAK 144
           EA  D KK+L+ +PS  + K
Sbjct: 89  EAEDDFKKVLKSNPSEQEEK 108

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G+ L  +GK +EA   ++  L+     +  + A +   K  +    + +   A + A+  
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 73  ----------------SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 116
                           +     R  CF+K G+  ++I +   A +L     +A  + +  
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197

Query: 117 HEKLEHFEEAIADMKKILEFDPSNNQAKR-----TILRKLKEMGNS 157
           + +L   E +++++++ L+ D  + +          L KL E    
Sbjct: 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 48/159 (30%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
                A GK + AL      + +       +  +A                         
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKM-----DFTAA------------------------- 73

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---------------LIRRAEAH 117
                 RG   LK GK +E+  +  K L+ NP+  +                L  +A   
Sbjct: 74  ---RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130

Query: 118 EKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
                +  AI  + KILE    + + +        + G 
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 98.6 bits (246), Expect = 1e-26
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 36/154 (23%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
            A E K + N  F    YE A+  Y  A+                               
Sbjct: 12  RAEELKTQANDYFKAKDYENAIKFYSQAI------------------------------- 40

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
             E+    +I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L  F 
Sbjct: 41  --ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 98

Query: 125 EAIADMKKILEFDPSNNQAK---RTILRKLKEMG 155
            A+ D + +++  P +  AK   +   + +K+  
Sbjct: 99  AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 60  KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
           ++  PA    + R+     +   + K   +E +IK  ++A+ELNP+       R+ A+ +
Sbjct: 1   RDEPPADGALK-RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 59

Query: 120 LEHFEEAIADMKKILEFDPSNNQA 143
            E +  A+ D  + +E D    + 
Sbjct: 60  TECYGYALGDATRAIELDKKYIKG 83

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  101 bits (253), Expect = 2e-26
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           + +  A+  K++GN LF E K EEA+ QYE+A+         +     +           
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM--------- 224

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                     +++ CH N   C +KL +++E+I  C   L       KAL RR +A  +L
Sbjct: 225 -------ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL 277

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
              + A  D +K  ++ P +   +R  LR L E
Sbjct: 278 GQMDSARDDFRKAQKYAPDDKAIRRE-LRALAE 309

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 99.8 bits (249), Expect = 4e-25
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 29/157 (18%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           K + + N+      +L  +G+Y +A  +YE  ++                          
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE------------------------ 287

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P +AE           CF K  K  E+I+ C++ L++ P  + AL  RAEA+   
Sbjct: 288 -----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157
           E ++EAI D +   E + ++ Q +  + +  + +  S
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 33/144 (22%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           +++ +  +    G KL A G+  +AL Q+  A+                           
Sbjct: 21  QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------------ 56

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                P+        +  R   FL +GK + ++ + TK ++L   +  A ++R     K 
Sbjct: 57  -----PDNYI----AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107

Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
              +EA  D KK+L+ +PS N+ K
Sbjct: 108 GKLDEAEDDFKKVLKSNPSENEEK 131

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 33/145 (22%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
              +E    + +    F  G Y  A+   +  L V                         
Sbjct: 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------------------------ 173

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
                   AELR      R  CF+K G+  ++I +   A +L     +A  + +  + +L
Sbjct: 174 -----VWDAELRE----LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224

Query: 121 EHFEEAIADMKKILEFDPSNNQAKR 145
              E +++++++ L+ D  + +   
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFA 249

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 23/91 (25%)

Query: 76  HSNRGICFLKLGKFEESIKE-----------------------CTKALELNPTYMKALIR 112
           H + G+       + +S+ +                          A++ +P    A  R
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65

Query: 113 RAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           RA     +   + A+ D+ K+++       A
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 99.0 bits (246), Expect = 8e-25
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 28/184 (15%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
            +A   K +G   F  GKY +A++QY   +               E + G S  E K   
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL------------EMEYGLSEKESKA-- 311

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                         N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  F
Sbjct: 312 ----SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF 367

Query: 124 EEAIADMKKILEFDPSNNQAKRTI----------LRKLKEMGNSILGRFGMSTDNFKAVK 173
           E A  D +K+LE +P N  A+  I            + + +  ++  +F       +A K
Sbjct: 368 ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANK 427

Query: 174 DPNT 177
               
Sbjct: 428 AMGK 431

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 92.1 bits (229), Expect = 3e-24
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 38/155 (24%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           E+++ K EGN   A  +Y +A+  Y  AL +A                            
Sbjct: 10  ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---------------------------- 41

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
            P          SNR   +   G+ E++ ++   A  ++P Y KA  R   A   +  ++
Sbjct: 42  -PANPIY----LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK 96

Query: 125 EAIADMKKILEFDPSNNQAK-----RTILRKLKEM 154
            A    +K +E + +           T  RK++E 
Sbjct: 97  GAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 96.3 bits (240), Expect = 4e-24
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 19/150 (12%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALR-VASVPERAESASAPEAKEGQSASEK 59
           K L  + + K  GN  F    +E A+ +Y   LR V      AE A              
Sbjct: 218 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA-------------- 263

Query: 60  KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
                  ++  +   C  N G C LK+  ++ ++  C +ALE++P+  KAL RRA+  + 
Sbjct: 264 ----DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG 319

Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILR 149
           L+ +++A+AD+KK  E  P +   +  +L+
Sbjct: 320 LKEYDQALADLKKAQEIAPEDKAIQAELLK 349

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 93.8 bits (233), Expect = 1e-23
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 33/149 (22%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
            A E K +GN+LF   KY EA   Y  A+                               
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAI------------------------------- 31

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
                 L ++ ++NR +C+LK+ + E+++ +C +ALEL+   +KA     +   ++E ++
Sbjct: 32  --TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 89

Query: 125 EAIADMKKILEFDPSNNQAKRTILRKLKE 153
           EAIA++++               +     
Sbjct: 90  EAIANLQRAYSLAKEQRLNFGDDIPSALR 118

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 90.3 bits (225), Expect = 1e-22
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 33/141 (23%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
            +A EA+LEG + F +  +  A+  Y   ++ A  PE A                     
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARG------------------- 175

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                       +SNR     KL  F E+I +C KA+E +P +++A IR+A A   ++ +
Sbjct: 176 ------------YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223

Query: 124 EEAIADMKKILEFDPSNNQAK 144
             A+  +      D   N   
Sbjct: 224 ASALETLDAARTKDAEVNNGS 244

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.7 bits (187), Expect = 3e-17
 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 36/152 (23%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           + A++ K EGNK +   +++EA+  Y  A  +                            
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--------------------------- 35

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
              ++        +NR     + G++E +I     A+E            +++  ++ + 
Sbjct: 36  --KDIT-----YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88

Query: 124 EEAIADMKKILEFDPSNNQA--KRTILRKLKE 153
              + D+KK +E+   +        IL KL+ 
Sbjct: 89  YHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 11/148 (7%)

Query: 13  GNKLFAEGKYEEALLQYEVALR----VASVPERAESASAPEAKEGQSASEKKEVAPAPEM 68
                  G     L   +  +       +    A+  +     E +    + E    PE 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138

Query: 69  AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
           AE         G  +     +  ++K  T+ ++  P   +    RA A  KL  F EAIA
Sbjct: 139 AE----EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194

Query: 129 DMKKILEFDPSNNQA---KRTILRKLKE 153
           D  K +E DP+  +A   K T    +KE
Sbjct: 195 DCNKAIEKDPNFVRAYIRKATAQIAVKE 222

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
             MA+         G  F K  +F+E+I+   KA EL+      L  RA A  +   +E 
Sbjct: 2   GSMAD----KEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYET 56

Query: 126 AIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
           AI+ +   +E         + I +    +GN
Sbjct: 57  AISTLNDAVEQGREMRADYKVISKSFARIGN 87

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 34/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
               + +G+YE A+     A+                                 EM    
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQ-----------------------------GREMRA-- 73

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              +      F ++G     + +  K +E     +    R A+   KL + E+ +   + 
Sbjct: 74  --DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEA 130

Query: 133 ILEFDPSNNQA 143
               +P   + 
Sbjct: 131 EAYVNPEKAEE 141

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 91.7 bits (228), Expect = 3e-22
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 37/152 (24%)

Query: 2   ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE 61
           AL  A E K + N  F    YE A+  Y  A+                            
Sbjct: 2   ALKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------------------- 33

Query: 62  VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
                E+    +I + NR + +L+   +  ++ + T+A+EL+  Y+K   RRA ++  L 
Sbjct: 34  -----ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88

Query: 122 HFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
            F  A+ D + +++  P +  AK     K +E
Sbjct: 89  KFRAALRDYETVVKVKPHDKDAK----MKYQE 116

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 83  FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142
           + K   +E +IK  ++A+ELNP+       R+ A+ + E +  A+ D  + +E D    +
Sbjct: 16  YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75

Query: 143 AKRTILRKLKEMGNSILGRFGMSTDNFKAV--KDPN 176
                 R  +   N  LG+F  +  +++ V    P+
Sbjct: 76  GY---YR--RAASNMALGKFRAALRDYETVVKVKPH 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 83.1 bits (206), Expect = 3e-21
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 35/145 (24%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           +++  + K +GN LF +G Y EA+  Y+  +                             
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------------------------- 34

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
              P+      + +SN+ +  +KLG++ ++I+ C + L    T     IR      +LE 
Sbjct: 35  ---PQNP----VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLEL 86

Query: 123 FEEAIADMKK-ILEFDPSNNQAKRT 146
            + A+  ++  ++E D       R+
Sbjct: 87  AQGAVGSVQIPVVEVDELPEGYDRS 111

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 35/153 (22%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
             A   K +GN+ F   KY++A+  Y  AL +             +              
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----------EDP------------- 39

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                     + +SN   C++ +G  ++ ++  TKALEL P Y K L+RRA A+E L  F
Sbjct: 40  ----------VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89

Query: 124 EEAIADMKKI-LEFDPSNNQAKRTILRKLKEMG 155
            +A+ D+  + L  D ++   +  + R L +  
Sbjct: 90  ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.3 bits (175), Expect = 5e-15
 Identities = 20/158 (12%), Positives = 40/158 (25%), Gaps = 37/158 (23%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
             A   +  G   F +     A    + A+ +                            
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------------------------- 266

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                   R   +    +         E      KAL+L+         R + +  L+++
Sbjct: 267 ------FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320

Query: 124 EEAIADMKKILEFDPSNNQA---KRTILRKLKEMGNSI 158
           ++A  D  K  E DP N         +  +  +  +  
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPA------- 65
               + E K+++    +  A R    PE  E  +       +  ++K +   A       
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKF--PEAPEVPN----FFAEILTDKNDFDKALKQYDLA 398

Query: 66  ----PEMAELRSICHSNRGICFLK---------LGKFEESIKECTKALELNPTYMKALIR 112
                ++  +    +        K         +  F E+     KA +L+P   +A I 
Sbjct: 399 IELENKLDGI----YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454

Query: 113 RAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
            A+   + E  +EAI   ++  +   +  + 
Sbjct: 455 LAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 20/138 (14%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
            ++     L      +   Y++A   +  A                   E Q     ++ 
Sbjct: 186 ADKELMNGLSNLYKRSPESYDKADESFTKAA---------------RLFEEQLDKNNEDE 230

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
               ++A        + GI          + ++  KA+EL P    + I  A        
Sbjct: 231 KLKEKLAIS----LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRND 285

Query: 123 FEEAIADMKKILEFDPSN 140
             E      K L+ D +N
Sbjct: 286 STEYYNYFDKALKLDSNN 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 27/165 (16%)

Query: 4   NEANEAKLE-GNKLFAEGKYEEALLQYEVALRVASVPERAESASA-------PEAKEGQS 55
           + + E  LE      A  K +E     + A    +      +          P      S
Sbjct: 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166

Query: 56  ASEKKEVAPAPE------------------MAELRSICHSNRGICFLK-LGKFEESIKEC 96
                +                        + +     +      F K    FEE + + 
Sbjct: 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226

Query: 97  TKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141
            +  +L      +L               A  D+KK +E  P  N
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 15/148 (10%), Positives = 40/148 (27%), Gaps = 36/148 (24%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
                + G  ++ +     AL +                              P+ ++  
Sbjct: 46  SACYVSVGDLKKVVEMSTKALEL-----------------------------KPDYSK-- 74

Query: 73  SICHSNRGICFLKLGKFEESIKECTKA---LELNPTYMKALIRRAEAHEKLEHFEEAIAD 129
                 R      LGKF +++ + +      + N   ++ ++ R    + +   +E   D
Sbjct: 75  --VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132

Query: 130 MKKILEFDPSNNQAKRTILRKLKEMGNS 157
           +          +       +  +E   S
Sbjct: 133 IDTATATPTELSTQPAKERKDKQENLPS 160

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 79.3 bits (196), Expect = 1e-19
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 42/160 (26%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
            +A + K  GN  + +  ++ AL  Y+ A  +                            
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELD--------------------------- 34

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP-------TYMKALIRRAEA 116
             P          +N+   + + G + +  + C KA+E+            KA  R   +
Sbjct: 35  --PTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88

Query: 117 HEKLEHFEEAIADMKKILEFDPSNNQAK--RTILRKLKEM 154
           + K E +++AI    K L    + +  K  +   + LKE 
Sbjct: 89  YFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ 128

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 35/80 (43%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
             G    K   F+ ++K   KA EL+PT M  +  +A  + +   + +     +K +E  
Sbjct: 9   ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68

Query: 138 PSNNQAKRTILRKLKEMGNS 157
             N +  R I +    +GNS
Sbjct: 69  RENREDYRQIAKAYARIGNS 88

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 78.9 bits (195), Expect = 2e-19
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 40/149 (26%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           + A   K  GN  + +  +E+A + Y+ A+ +                            
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--------------------------- 38

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP-------TYMKALIRRAEA 116
             P         ++N+   + +  KF E ++ C KA+E+            KA+ R   A
Sbjct: 39  --PSNITF----YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92

Query: 117 HEKLEHFEEAIADMKKILEFDPSNNQAKR 145
            +K      A+    + L         K+
Sbjct: 93  FQKQNDLSLAVQWFHRSLSEFRDPELVKK 121

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 58.8 bits (143), Expect = 8e-12
 Identities = 17/80 (21%), Positives = 35/80 (43%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           + G    K   FE++     KA+EL+P+ +     +A  + + + F E +   +K +E  
Sbjct: 13  DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72

Query: 138 PSNNQAKRTILRKLKEMGNS 157
                  + I + +   GN+
Sbjct: 73  RETRADYKLIAKAMSRAGNA 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 34/181 (18%)

Query: 6   ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPA 65
           A + K  GN  F    + EA+  Y+ A+ +                              
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----------------------------- 55

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P         +SN   C++  G  E+ I+  TKALE+ P + KAL+RRA A+E L +F +
Sbjct: 56  PNEPVF----YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111

Query: 126 AIADMKKI-LEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF 184
           A+ D+  + L  D      +  + R L +    +L       +   +   P+  + +  F
Sbjct: 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171

Query: 185 Q 185
            
Sbjct: 172 G 172

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 34/140 (24%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           N A      G   F +    +A +  + ++ +                            
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL---------------------------- 272

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                       +    +        +E  K   KA++LNP Y      R + +  L+ +
Sbjct: 273 ------HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326

Query: 124 EEAIADMKKILEFDPSNNQA 143
           + A  D +K    +P N   
Sbjct: 327 KNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 20/131 (15%), Positives = 30/131 (22%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G   F    Y+ A   ++ A  +   PE                                
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLN--PENVYP---------------------------- 346

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              +        K GKF ES     +     PT  +     AE       F+ AI     
Sbjct: 347 ---YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403

Query: 133 ILEFDPSNNQA 143
               +    + 
Sbjct: 404 AKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
              L   G ++ A+ QY++A R+             +   G      K    A       
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEE--------VQEKIHVGIGPLIGKATILAR------ 430

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               S++    L   KF  +IK  TKA EL+P   +A I  A+   ++E  +EAI   + 
Sbjct: 431 ---QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 133 ILEFDPSNNQAKRTILRKLKEMGN 156
                 + ++  +       E   
Sbjct: 488 SAILARTMDEKLQ--ATTFAEAAK 509

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.9 bits (185), Expect = 2e-16
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES-----ASAPEAKEGQSASE--KKEVAPA 65
            ++ +  G +E A        R    P+         +   + +    ++      +   
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P +AE     +SN G  + + G+ +E+I+    AL L P ++   I  A A       E 
Sbjct: 64  PLLAE----AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

Query: 126 AIADMKKILEFDPSNNQA 143
           A+      L+++P     
Sbjct: 120 AVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 33/144 (22%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
            N L  +G   EA   Y  ALR+   P  A+S                            
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLC--PTHADS---------------------------- 307

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +N      + G  EE+++   KALE+ P +  A    A   ++    +EA+   K+
Sbjct: 308 ---LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364

Query: 133 ILEFDPSNNQAKRTILRKLKEMGN 156
            +   P+   A   +   LKEM +
Sbjct: 365 AIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.3 bits (173), Expect = 8e-15
 Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
               + +G  + A+  Y  A+ +   P   ++                            
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQ--PHFPDA---------------------------- 273

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              + N      + G   E+      AL L PT+  +L   A    +  + EEA+   +K
Sbjct: 274 ---YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 133 ILEFDPSNNQA 143
            LE  P    A
Sbjct: 331 ALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 13/138 (9%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES-----ASAPEAKEGQSASE--KKEVAPA 65
           GN L A G+ EEA   Y  A+     P  A +            E   A    +K V   
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P   +     + N G    +   F+ ++    +AL L+P +       A  + +    + 
Sbjct: 200 PNFLD----AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255

Query: 126 AIADMKKILEFDPSNNQA 143
           AI   ++ +E  P    A
Sbjct: 256 AIDTYRRAIELQPHFPDA 273

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN L     ++ A+  Y  AL +                             +P  A   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSL-----------------------------SPNHAV-- 238

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              H N    + + G  + +I    +A+EL P +  A    A A ++     EA      
Sbjct: 239 --VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 133 ILEFDPSNNQA 143
            L   P++  +
Sbjct: 297 ALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.7 bits (169), Expect = 3e-14
 Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN     G+ +EA+  Y  ALR+                              P+  +  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLK-----------------------------PDFIDG- 103

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              + N     +  G  E +++    AL+ NP             + L   EEA A   K
Sbjct: 104 ---YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 133 ILEFDPSNNQA 143
            +E  P+   A
Sbjct: 161 AIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 9/66 (13%), Positives = 22/66 (33%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
                  + G FE + + C +     P     L+  +  H +    + +       ++ +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 138 PSNNQA 143
           P   +A
Sbjct: 64  PLLAEA 69

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     PE
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 377 QVV----AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 433 PVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.7 bits (176), Expect = 3e-15
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    +  L     A       V ++        A E  +       +     PE
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 173 QVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 228

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 229 PVLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 70.5 bits (173), Expect = 8e-15
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     P+
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+   +   + LE  +  +
Sbjct: 241 QVV----AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 297 PVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 9/133 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    +  L     A       V ++        A E  +       +     PE
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++       L   +  +    +A  L P  + A+         LE     +
Sbjct: 411 QVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466

Query: 128 ADMKKILEFDPSN 140
           +     L    ++
Sbjct: 467 SRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     P+
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++       L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 275 QVVA----IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 330

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 331 PVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 7e-14
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 9/149 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++   +    A E  +       +     P+
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 309 QVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 364

Query: 128 ADMKKILEFDPSNNQAKRTILRKLKEMGN 156
             + +     P    A  +     + +  
Sbjct: 365 PVLCQAHGLTPEQVVAIASNGGGKQALET 393

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 14/135 (10%)

Query: 19  EGKYEEALLQYEVALRVASV---PERAE-------SASAPEAKEGQSASEKKEVAPAPEM 68
                EA+  +  AL  A +   PE+            A E  +       +     P+ 
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

Query: 69  AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
                   ++       L   +  +    +A  L P  + A+       + LE  +  + 
Sbjct: 106 VVA----IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLP 161

Query: 129 DMKKILEFDPSNNQA 143
            + +     P    A
Sbjct: 162 VLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 17/146 (11%), Positives = 38/146 (26%), Gaps = 9/146 (6%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSAS 57
           L   +           E     A       L+     +  + +R    +       ++A 
Sbjct: 1   LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60

Query: 58  EKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH 117
               +   PE         ++       L   +  +    +A  L P  + A+       
Sbjct: 61  TGAPLNLTPEQVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 118 EKLEHFEEAIADMKKILEFDPSNNQA 143
           + LE  +  +  + +     P    A
Sbjct: 117 QALETVQRLLPVLCQAHGLTPEQVVA 142

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/126 (13%), Positives = 29/126 (23%), Gaps = 16/126 (12%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     P+
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L      +     AL               A   L     A+
Sbjct: 445 QVV----AIASNGGGRPALESIVAQLSRPDPALAALTND------HLVALACL-GGRPAL 493

Query: 128 ADMKKI 133
             +KK+
Sbjct: 494 DAVKKL 499

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 16/141 (11%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES-----ASAPEAKEGQSASE-----KKEV 62
            + LF    Y EA+  +                        E  +   A +       +V
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                 +          G   +K G+   +I++   A++ + T +    +         +
Sbjct: 68  NATKAKSA----DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 123 FEEAIADMKKILEFDPSNNQA 143
           F  AI  M+K +    ++ + 
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G  L  +G+   A+ QY+ A+                                    +  
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRD-----------------------------TTRLD-- 109

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              +   G  F   G F  +I+   K +    T  K      +A+   + + +A +   K
Sbjct: 110 --MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 133 ILEFDPSNNQA 143
           +LE  P+    
Sbjct: 168 VLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 24/162 (14%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES-----ASAPEAKEGQSASE--KKEVAPA 65
           G+  + +G +  A+   E  +R        +       +    KE   A     K +   
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172

Query: 66  PEMAELRSICHSNRGICFLKLG---KFEESIKECTKALEL--------NPTYMKALIRRA 114
           P +       +  R           K   +     K +E+            ++A    A
Sbjct: 173 PNIYI----GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228

Query: 115 EAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
             +       +A A  K IL  DP+N +A   +  KL+   +
Sbjct: 229 YYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM---KK 132
                    K   + E+I+   K             RRA  + +L  ++ A  D+     
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 133 ILEFDPSNNQA 143
            +    + +  
Sbjct: 66  KVNATKAKSAD 76

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASV--PERAES-----ASAPEAKEGQSA 56
               ++++    L    + E  L + E  L   ++   ERA+                 A
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62

Query: 57  SE--KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 114
                + +A  P+M E      +  GI   + G F+ + +     LEL+PTY  A + R 
Sbjct: 63  RNDFSQALAIRPDMPE----VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118

Query: 115 EAHEKLEHFEEAIADMKKILEFDPSNNQA 143
            A       + A  D+    + DP++   
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 9/150 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES------ASAPEAKEGQSASEKKEVAPAP 66
           G  L+  G+ + A        +    P           A     ++      K+    + 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175

Query: 67  EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126
           +     +I     G    +    E    + T    L     +      + +  L   + A
Sbjct: 176 KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234

Query: 127 IADMKKILEFDPSNNQAKRTILRKLKEMGN 156
            A  K  +  +  N    R  L +L  +G 
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQ 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 37/146 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G  L   G ++ A   ++  L +                              P      
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLELD-----------------------------PTYNY-- 112

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              H NRGI     G+ + +  +     + +P      +    A +KL+  ++A   +K+
Sbjct: 113 --AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQ 169

Query: 133 ILEFDPSNNQA---KRTILRKLKEMG 155
             E               L  + E  
Sbjct: 170 HFEKSDKEQWGWNIVEFYLGNISEQT 195

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 12/126 (9%), Positives = 28/126 (22%), Gaps = 33/126 (26%)

Query: 7   NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAP 66
           N  +     +  +   E           +A                              
Sbjct: 182 NIVEFYLGNISEQTLMERLKADATDNTSLA-----------------------------E 212

Query: 67  EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126
            ++E     +   G  +L LG  + +      A+  N                L   ++ 
Sbjct: 213 HLSET----NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268

Query: 127 IADMKK 132
           +A+  +
Sbjct: 269 LAESDQ 274

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 31/144 (21%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G  L+ + +YEEA  +   A +    PER+                              
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRV---------------------------- 143

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N G+  L++ K  ++ +   K+L LN       +  A+   K   +  A      
Sbjct: 144 ---FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200

Query: 133 ILEFDPSNNQAKRTILRKLKEMGN 156
             +    N ++    +R  K   +
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFED 224

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 44  SASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELN 103
           S   P        +  K      E  +     +   G+ +L+ G  E++     KALE++
Sbjct: 12  SGLVPRGSHMGDQNPLKTDKGRDEARDA----YIQLGLGYLQRGNTEQAKVPLRKALEID 67

Query: 104 PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           P+   A    A   +     + A  + +K L  D  N + 
Sbjct: 68  PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 33/123 (26%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G      G  E+A +    AL +                              P  A+  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEI-----------------------------DPSSAD-- 72

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              H+   + F    + + + +E  KAL  +    + L        + + +EEA   + +
Sbjct: 73  --AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130

Query: 133 ILE 135
             +
Sbjct: 131 ASQ 133

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 72.9 bits (178), Expect = 2e-15
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESAS-----APEAKEGQSASE--KKEVAPA 65
            N    +G  EEA+  Y  AL V   PE A + S       +  + Q A    K+ +  +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P  A+     +SN G    ++   + +++  T+A+++NP +  A    A  H+   +  E
Sbjct: 74  PTFAD----AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129

Query: 126 AIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
           AIA  +  L+  P    A   +   L+ + +
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.5 bits (151), Expect = 5e-12
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES-----ASAPEAKEGQSASE--KKEVAPA 65
            + L  +GK +EAL+ Y+ A+R++  P  A++      +  E ++ Q A +   + +   
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P  A+     HSN        G   E+I     AL+L P +  A    A   + +  + +
Sbjct: 108 PAFAD----AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163

Query: 126 AIADMKKILEFDPSNNQA 143
               MKK++       + 
Sbjct: 164 YDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.7 bits (149), Expect = 9e-12
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
            P  A+      +N      + G  EE+++   KALE+ P +  A    A   ++    +
Sbjct: 5   CPTHADS----LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60

Query: 125 EAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
           EA+   K+ +   P+   A   +   LKEM +
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 6   ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPA 65
            +E   + +     G+  +A+  +   + +    +R E        +    S K      
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKL----- 56

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
                      +   + + K   ++++     + L+  P  +  L   AE        ++
Sbjct: 57  ----------ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 126 AIADMKKILEFDPSNNQA 143
           A+   +KIL+ +  N  A
Sbjct: 107 ALRMYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 76  HSNRG-ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134
           +   G   +L   + ++ ++   K L        A  R   +      +E+A   ++K++
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184

Query: 135 EFDPSNNQAK--RTILRKLKEMG 155
              PS    K    ILR  KE+ 
Sbjct: 185 LRFPSTEAQKTLDKILRIEKEVN 207

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 68.8 bits (167), Expect = 3e-15
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           K +  A  A  +  +    G+Y+EA      A+ ++      E                 
Sbjct: 6   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE----------------- 48

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKAL-------ELNP----TYMKA 109
               A + A   + CH+        L  F+E++    KAL       ELN      ++ A
Sbjct: 49  ----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 104

Query: 110 LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI 158
           +  RA A + L    EA+ + KK++E             R ++   + I
Sbjct: 105 VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 153

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 24/144 (16%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G   F  G+++ A   +  AL                 K   +     +  P        
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKI--------------KAIGNEVTVDKWEPL------- 238

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +N G    KL K+ E++    +AL L P            H  + +FE A+     
Sbjct: 239 ---LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

Query: 133 ILEFDPSNNQAKRTILRKLKEMGN 156
            L     +  +   +   ++    
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 14/139 (10%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAE-----SASAPEAKEGQSASE--KKEVAPA 65
             + +    ++       V +     P  A        +  E  +         K V   
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86

Query: 66  PEMAELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           P             G  +L +G   E + +  +KA  L  TY  A I    +       +
Sbjct: 87  PSNPV----SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142

Query: 125 EAIADMKKILEFDPSNNQA 143
           +A+A      +     +  
Sbjct: 143 QAMAAYFTAAQLMKGCHLP 161

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 12/131 (9%), Positives = 33/131 (25%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G+    E ++++A+  Y  A ++                                     
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLM-----------------------------KGCHL-- 160

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                  G+ +      + + +  ++AL + P     +        +   ++ A      
Sbjct: 161 --PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218

Query: 133 ILEFDPSNNQA 143
            LE   +    
Sbjct: 219 ALEKIKAIGNE 229

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 42/140 (30%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G +       + A   +  AL +A                             PE   + 
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIA-----------------------------PEDPFV- 195

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHF 123
                  G+   + G+++ + K    ALE             +   L        KL+ +
Sbjct: 196 ---MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252

Query: 124 EEAIADMKKILEFDPSNNQA 143
            EA+   ++ L   P N   
Sbjct: 253 AEALDYHRQALVLIPQNAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 14/136 (10%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES------ASAPEAKEGQSASE--KKEVAP 64
              L    K  E        + +   P    S             + + A     K    
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
                          G  F    + ++++     A +L       ++     +    + +
Sbjct: 121 EKTYGP----AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176

Query: 125 EAIADMKKILEFDPSN 140
            A     + L   P +
Sbjct: 177 LAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 11/67 (16%), Positives = 22/67 (32%)

Query: 77  SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136
            +          F+   K  +  +E +P +   L        +L    E      K+++ 
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 137 DPSNNQA 143
            PSN  +
Sbjct: 86  YPSNPVS 92

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 26/131 (19%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G   F +   + A+  ++ AL +    +  E   A                         
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA------------------------ 517

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +N G  + KL  ++ +I    + L L+          A  +   +    AI  + +
Sbjct: 518 --TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 133 ILEFDPSNNQA 143
            L   P+   A
Sbjct: 576 SLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 13/138 (9%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAE-----SASAPEAKEGQSASE--KKEVAPA 65
            + LF   ++ + L      L +   P   +      AS  E+ E           V   
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           PE A          GI +L + K  E+ +  +K+  ++P +  A I  A +       ++
Sbjct: 370 PEKAVT----WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425

Query: 126 AIADMKKILEFDPSNNQA 143
           AI+            +  
Sbjct: 426 AISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 33/132 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
            +    EG++++A+  Y  A R+                                     
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLF-----------------------------QGTHL-- 442

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
              +   G+  ++LG    + +    +  L       L             + AI   + 
Sbjct: 443 --PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500

Query: 133 ILEFDPSNNQAK 144
            L         +
Sbjct: 501 ALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 8/158 (5%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           EA+   L G        ++ A   Y+ AL V    +  E+     +    +A E+ ++  
Sbjct: 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVL 256

Query: 65  APEMAELRSI------CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
               +                 +            ++   ++         L+ +A+   
Sbjct: 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316

Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
               F + +A   KILE DP N       L  L E G 
Sbjct: 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPA------- 65
              L   G+  +  L     +     PE+A +  A     G       +++ A       
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRH--PEKAVTWLA----VGIYYLCVNKISEARRYFSKS 399

Query: 66  ----PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
               P+               F   G+ +++I   T A  L        +     H +L 
Sbjct: 400 STMDPQFGP----AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455

Query: 122 HFEEAIADMKKILEFDPSN 140
           +   A   ++        +
Sbjct: 456 NILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 7e-10
 Identities = 7/68 (10%), Positives = 20/68 (29%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
              +        +F + +   TK LE++P  +        +  +     +       +++
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 136 FDPSNNQA 143
             P     
Sbjct: 368 RHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 16/141 (11%), Positives = 35/141 (24%), Gaps = 17/141 (12%)

Query: 11  LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAE 70
           L    L     ++ AL             + A      +            +     M  
Sbjct: 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD----------GGIKLEASM-- 202

Query: 71  LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
                   RG  +  L  F+ + +   +AL ++    +A  +    H      E  +   
Sbjct: 203 -----CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257

Query: 131 KKILEFDPSNNQAKRTILRKL 151
                +   +    R++    
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLK 278

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 20  GKYEEALLQYEVALRVASVPERAE-----SASAPEAKEGQSASE--KKEVAPAPEMAELR 72
                 LLQ   A+R    P+        + +     +  +     ++ +A  P   E  
Sbjct: 3   ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA- 59

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +  G       +  E+     +A +  P +    +    A E     E A A   +
Sbjct: 60  ---VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 133 ILEFDPSNNQAKRTILRKLKEMGN 156
             +  P        +L   + + +
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCD 140

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 13/128 (10%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESAS--APEAKEGQSASEKKE-----VAPA 65
            +     G      +  +  L +   P   E+ +         Q  +E           A
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           PE   +        G      G+ E +    T+A +L P       +      +L  +  
Sbjct: 88  PEHPGI----ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143

Query: 126 AIADMKKI 133
                 ++
Sbjct: 144 LDVLSAQV 151

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.3 bits (169), Expect = 2e-14
 Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     P 
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++       L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 632 QVV----AIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 687

Query: 128 ADMKKILEFDPSNNQA 143
             + +          A
Sbjct: 688 PVLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    +  L     A       V ++        A E  +       +     P+
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 293 QVVA----IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 349 PVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 16/136 (11%), Positives = 34/136 (25%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    +  L     A       V ++        A E  +       +     P+
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++       L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 327 QVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 382

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 383 PVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 16/149 (10%), Positives = 37/149 (24%), Gaps = 9/149 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    +  L     A       V ++        A E  +       +     P+
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L    + A+       + LE  +  +
Sbjct: 666 QVV----AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLL 721

Query: 128 ADMKKILEFDPSNNQAKRTILRKLKEMGN 156
             + +     P    A  +     + +  
Sbjct: 722 PVLCQAHGLTPDQVVAIASNGGGKQALET 750

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    ++ L     A       V ++        A    +       +     P+
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 530 QVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 585

Query: 128 ADMKKILEFDPSNNQA 143
             + +          A
Sbjct: 586 PVLCQAHGLTQVQVVA 601

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 16/150 (10%), Positives = 41/150 (27%), Gaps = 12/150 (8%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES------ASAPEAKEGQSASEKKEVAPAP 66
           G    A    +  L     A  +   P++  +        A E  +       +     P
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASNGGKQALETVQRLLPVLCQAHGLTP 426

Query: 67  EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126
           +         ++       L   +  +    +   L P  + A+       + LE  ++ 
Sbjct: 427 DQVVA----IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482

Query: 127 IADMKKILEFDPSNNQAKRTILRKLKEMGN 156
           +  + +     P    A  + +   + +  
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALAT 512

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 9/149 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
                A    +  L     A       V ++        A E  +       +     P+
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L    + A+       + LE  +  +
Sbjct: 564 QVV----AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLL 619

Query: 128 ADMKKILEFDPSNNQAKRTILRKLKEMGN 156
             + +     P+   A  +     + +  
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALET 648

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 16/138 (11%), Positives = 35/138 (25%), Gaps = 13/138 (9%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAE-------SASAPEAKEGQSASEKKEVAPA 65
                A    +  L     A  +   P++            A E  +       +     
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
            E         ++       L   +  +    +A  L P  + A+       + LE  + 
Sbjct: 698 QEQVV----AIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR 753

Query: 126 AIADMKKILEFDPSNNQA 143
            +  + +     P+   A
Sbjct: 754 LLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 4e-11
 Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 14/135 (10%)

Query: 19  EGKYEEALLQYEVALR----------VASVPERAESASAPEAKEGQSASEKKEVAPAPEM 68
                EA+     AL           V ++        A E  +       +     P  
Sbjct: 166 GVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225

Query: 69  AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
                   ++       L   +  +    +A  L P  + A+       + LE  +  + 
Sbjct: 226 VV----AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 129 DMKKILEFDPSNNQA 143
            + +     P    A
Sbjct: 282 VLCQAHGLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 10/136 (7%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     P+
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+         LE  +  +
Sbjct: 361 QVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQRLL 415

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 416 PVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 15/143 (10%), Positives = 36/143 (25%), Gaps = 9/143 (6%)

Query: 18  AEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           A    +  L     A       V ++        A E  +       +     P      
Sbjct: 407 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA- 465

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               ++       L   ++ +    +A  L P  + A+       + L   +  +  + +
Sbjct: 466 ---IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQ 522

Query: 133 ILEFDPSNNQAKRTILRKLKEMG 155
                P    A  +     + + 
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALE 545

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       +     P+
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++ G     L   +  +    +A  L P  + A+       + LE  +  +
Sbjct: 734 QVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789

Query: 128 ADMKKILEFDPSNNQA 143
             + +      +   A
Sbjct: 790 PVLCQDHGLTLAQVVA 805

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 14/151 (9%), Positives = 39/151 (25%), Gaps = 13/151 (8%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAES-ASAPEAKEGQSASEK------KEVAPA 65
                A    +  L     A  +   P++  + AS    K+     ++      +     
Sbjct: 708 NGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 765

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P          ++       L   +  +    +   L    + A+       + LE  + 
Sbjct: 766 PAQVVA----IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQR 821

Query: 126 AIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
            +  + +          A  + +   + +  
Sbjct: 822 LLPVLCQAHGLTQDQVVAIASNIGGKQALET 852

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 15/136 (11%), Positives = 33/136 (24%), Gaps = 9/136 (6%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPE 67
           G    A    +  L     A       V ++        A E  +       ++      
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
                    ++       L   +  +    +A  L    + A+       + LE  +  +
Sbjct: 802 QVVA----IASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLL 857

Query: 128 ADMKKILEFDPSNNQA 143
             + +     P    A
Sbjct: 858 PVLCQDHGLTPDQVVA 873

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 10/143 (6%)

Query: 11  LEGNKLFAEGKYEEALLQYEVALR--VASVPERAESA--------SAPEAKEGQSASEKK 60
                + A  ++  AL    V  +  + ++PE             S   A E       +
Sbjct: 86  FTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGE 145

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
              P  ++   + +  + RG                   L L P  + A+       + L
Sbjct: 146 LRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQAL 205

Query: 121 EHFEEAIADMKKILEFDPSNNQA 143
           E  +  +  + +     P+   A
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVA 228

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 66.7 bits (164), Expect = 3e-14
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G      G+Y +A++  E            +                             
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDAD--AFDVDV---------------------------- 44

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                + GI ++K G  +   +   ++L   P  +K        + +++ ++ A+  + K
Sbjct: 45  ---ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101

Query: 133 ILEFDPSNNQA 143
           + E +P N   
Sbjct: 102 VAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 65.2 bits (160), Expect = 8e-14
 Identities = 26/137 (18%), Positives = 39/137 (28%), Gaps = 33/137 (24%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G       KY+ A+                                       P      
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEAN-----------------------------PINFN-- 111

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                  G+    LG+F+E+I     AL L P   K     A ++E++   EEA+   KK
Sbjct: 112 --VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

Query: 133 ILEFDPSNNQAKRTILR 149
             E D   +     + R
Sbjct: 170 ANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 63.2 bits (155), Expect = 4e-13
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G      G  +      E +L  A  P+  +                             
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADA--PDNVKV---------------------------- 78

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +  G+ ++++ K++ ++    K  E NP       R   A + L  F+EAI   K 
Sbjct: 79  ---ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135

Query: 133 ILEFDPSNNQA 143
            L   P+  + 
Sbjct: 136 ALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 9/70 (12%), Positives = 29/70 (41%)

Query: 74  ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133
           + + ++GI   K G++ +++    +  + +   +   +    A+ K    +     +++ 
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68

Query: 134 LEFDPSNNQA 143
           L   P N + 
Sbjct: 69  LADAPDNVKV 78

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 33/157 (21%)

Query: 12  EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
           EG  +       EA L +E   + A  PER E+                           
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAA--PEREEA--------------------------- 57

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                 + G+   +  K   +I     A  L+P  +      A +H    +   A+A ++
Sbjct: 58  ----WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 113

Query: 132 KILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDN 168
             L   P   Q     L+   ++ +  +         
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 17/149 (11%), Positives = 42/149 (28%), Gaps = 33/149 (22%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G        Y+ A      A+ +                              P+ A+L 
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELR-----------------------------PDDAQL- 208

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +  G       + +E++    +AL++NP Y++ +   A ++  +  ++ A   + +
Sbjct: 209 ---WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265

Query: 133 ILEFDPSNNQAKRTILRKLKEMGNSILGR 161
            +              R+           
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRM 294

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 12/68 (17%), Positives = 19/68 (27%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
               G+  LKL    E+        +  P   +A         + E    AI  +     
Sbjct: 24  PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83

Query: 136 FDPSNNQA 143
            DP +   
Sbjct: 84  LDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
                 E     AL      L     P+  +  S                       ++ 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVN----------------LQADVDID 137

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
            +   +    F    ++ E       ALE+NP   +        +    +++ A A++++
Sbjct: 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

Query: 133 ILEFDPSNNQA 143
            +E  P + Q 
Sbjct: 198 AVELRPDDAQL 208

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 33/148 (22%)

Query: 13  GNKLFAE-GKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
           G  L     +  E++  ++ AL   + P    +                           
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYIA--------------------------- 115

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
               + N+GIC  K G+F  +     ++L   P +  A    A          +A    K
Sbjct: 116 ----NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171

Query: 132 KILEFDPSNNQAKRTI-LRKLKEMGNSI 158
           K              +  +  K +GN+ 
Sbjct: 172 KYQSRVEVLQADDLLLGWKIAKALGNAQ 199

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 12/79 (15%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
           A +++ +     +   + +++   + ++      AL+ +P    A + RAE ++ L+  +
Sbjct: 4   ANQVSNI----KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND 59

Query: 125 EAIADMKKILEFDPSNNQA 143
           +A    ++ L   P + + 
Sbjct: 60  KAQESFRQALSIKPDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 15/163 (9%)

Query: 4   NEANEAKLE-GNKLFAEGKYEEALLQYEVALRVASVPERAESASA---PEAKEGQSASE- 58
           N+ +  K +   +      Y +A    E AL+     E A    A      K    A E 
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 59  -KKEVAPAPEMAELRSICHSNRGICFLK--LGKFEESIKECTKALE--LNPTYMKALIRR 113
            ++ ++  P+ AE+    ++N G  FL   L +  ES+    KAL     PT   A + +
Sbjct: 65  FRQALSIKPDSAEI----NNNYGW-FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119

Query: 114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
                K   F  A A +K+ L   P    A + + R     G 
Sbjct: 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.4 bits (158), Expect = 3e-14
 Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 35/131 (26%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G   +  G Y E++  +E A+++   PE ++                             
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLD--PEESKY---------------------------- 42

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYM--KALIRRAEAHEKLEHFEEAIADM 130
                 +G     L ++EE++      + +            +A+A   +E  E      
Sbjct: 43  ---WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA 99

Query: 131 KKILEFDPSNN 141
           +   + +  ++
Sbjct: 100 EARAKLEHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.4 bits (158), Expect = 4e-14
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
           +   G+     G + ESI    KA++L+P   K  + + +A   LE +EEA+     ++ 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 136 FDPSNNQA 143
                   
Sbjct: 69  VIEDEYNK 76

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G  L    + + AL   + A+ +                                  E  
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELN-----------------------------ENDTE-- 160

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                  G+C    G  +E++ +     E +P +  A       +   E+ E+A+  + K
Sbjct: 161 --ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218

Query: 133 ILEFDPSNNQA 143
            ++  P +  A
Sbjct: 219 AIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 13/145 (8%)

Query: 6   ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES-----ASAPEAKEGQSASE-- 58
           +     +  +    G YE+A   +  A+      E A              E + A    
Sbjct: 23  SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFY 80

Query: 59  KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
            K +      A      +   G  ++    ++E+     KAL                  
Sbjct: 81  DKALELDSSAAT----AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136

Query: 119 KLEHFEEAIADMKKILEFDPSNNQA 143
           KLE  + A+  +++ +E + ++ +A
Sbjct: 137 KLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN    +  Y+EA   +E ALR     E  +                             
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAG--MENGDL---------------------------- 127

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                  G   +KL + + ++    +A+ELN    +A  +           +EA++    
Sbjct: 128 ---FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184

Query: 133 ILEFDPSNNQA 143
           + E DP +  A
Sbjct: 185 VTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 33/110 (30%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G  L  EG  +EAL Q+         P  A++                            
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQD--PGHADA---------------------------- 195

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                N G+ +      E++++   KA+++ P +M AL  +        H
Sbjct: 196 ---FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 36/150 (24%)

Query: 12  EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
           EG K   EG     +L  E A+     P  AE+                           
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQD--PGDAEA--------------------------- 101

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                   GI   +    + +I    + LEL P  +KAL+  A ++    H ++A   +K
Sbjct: 102 ----WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 132 KILEFDPSNNQA---KRTILRKLKEMGNSI 158
             ++ +P        K+      + M  S 
Sbjct: 158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 20  GKYEEALLQYEVALRVAS--VPERAESASAPEAKEGQSASEKKEVAPA-------PEMAE 70
            ++E A    E           E  E A      E Q A  +  V+ +        E   
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62

Query: 71  LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
                    G+  LK G    +I     A+  +P   +A         + E+ + AI  +
Sbjct: 63  KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122

Query: 131 KKILEFDPSNNQA 143
           ++ LE  P+N +A
Sbjct: 123 QRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 33/161 (20%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G      G++  A+  +  AL V                              PE   L 
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVR-----------------------------PEDYSL- 249

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +  G       + EE+++  T+ALE+ P ++++      +   L  + EA+++   
Sbjct: 250 ---WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306

Query: 133 ILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK 173
            L     +   ++     +     + L       D  +  +
Sbjct: 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 13  GNKLFAEGKYEEALLQYEVALRV----ASVPERAESASAPEAKEGQSASEKKEVAPA--- 65
                     ++A    +  ++       + +  + +     +  +S  +   +      
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

Query: 66  -PEMAELR-----SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
             E A            +  G+ F   G+F  +I     AL + P       R       
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259

Query: 120 LEHFEEAIADMKKILEFDPSNNQA 143
            +  EEA+    + LE  P   ++
Sbjct: 260 GDRSEEAVEAYTRALEIQPGFIRS 283

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 33/142 (23%)

Query: 2   ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE 61
            L +  +   EG +   EG    A+L +E A++    P+  E                  
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHME------------------ 99

Query: 62  VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
                             G    +  +   +I    + LEL P    AL+  A +     
Sbjct: 100 -------------AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146

Query: 122 HFEEAIADMKKILEFDPSNNQA 143
              +A   ++  L + P+    
Sbjct: 147 LQRQACEILRDWLRYTPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 20/123 (16%), Positives = 42/123 (34%)

Query: 21  KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRG 80
              +   + +  L   +  +        +  +  SA+  K      E            G
Sbjct: 12  SDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEG 71

Query: 81  ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140
           +  L+ G    ++     A++ +P +M+A         + E    AI+ +++ LE  P N
Sbjct: 72  LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131

Query: 141 NQA 143
             A
Sbjct: 132 QTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 39/156 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G      G+Y++A+  +  AL V                              P    L 
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVR-----------------------------PNDYLL- 253

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               +  G       + EE++    +ALEL P Y+++      +   L    EA+    +
Sbjct: 254 ---WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310

Query: 133 ILEFDPSNNQAKRTILRKLKEMGN------SILGRF 162
            L     +   +       + + +      S+LG+ 
Sbjct: 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 18/149 (12%)

Query: 13  GNKLFAEGKYEEALLQYEVALRV---------ASVPERAESASAPEAKEGQSASEKKEVA 63
                 E    +A       LR           +      +   P  +   S        
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 64  PAPEM----AELR-----SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 114
              E+      L             G+ F   G++++++   T AL + P       +  
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258

Query: 115 EAHEKLEHFEEAIADMKKILEFDPSNNQA 143
                    EEA+A  ++ LE  P   ++
Sbjct: 259 ATLANGNQSEEAVAAYRRALELQPGYIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/134 (15%), Positives = 32/134 (23%), Gaps = 44/134 (32%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G  L    + EEA+  Y  AL +                              P      
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQ-----------------------------PGYIR-- 286

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE-----------AHEKLE 121
                N GI  + LG   E+++   +AL +                        A   L 
Sbjct: 287 --SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344

Query: 122 HFEEAIADMKKILE 135
             +   A   + L 
Sbjct: 345 QSDAYGAADARDLS 358

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 61.6 bits (151), Expect = 6e-13
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 33/128 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL +   P  AE+                            
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELD--PRSAEA---------------------------- 71

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K
Sbjct: 72  ---WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128

Query: 133 ILEFDPSN 140
            LE DP +
Sbjct: 129 ALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 61.3 bits (150), Expect = 1e-12
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
             N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 136 FDPSNNQA 143
            DP + +A
Sbjct: 64  LDPRSAEA 71

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 60.9 bits (149), Expect = 1e-12
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL +                              P  AE  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELD-----------------------------PRSAE-- 36

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K
Sbjct: 37  --AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94

Query: 133 ILEFDPSNNQA 143
            LE DP + +A
Sbjct: 95  ALELDPRSAEA 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 62.8 bits (153), Expect = 9e-13
 Identities = 15/66 (22%), Positives = 28/66 (42%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
             N G  +  L    E+ K  T+++  +     A  +R   + + E ++ AI D+K+ L 
Sbjct: 40  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99

Query: 136 FDPSNN 141
               N 
Sbjct: 100 QLRGNQ 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 16/88 (18%)

Query: 73  SICHSNRGICFLKLGKFEESIKECTKAL-ELNPTYMKALIR---------------RAEA 116
           ++ +  RG+ + +  K++ +IK+  +AL +L    +                     A  
Sbjct: 71  AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130

Query: 117 HEKLEHFEEAIADMKKILEFDPSNNQAK 144
           + K E +++A   +            +K
Sbjct: 131 YAKKEEWKKAEEQLALATSMKSEPRHSK 158

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
           M+ + +I   N G+       ++ ++   +   + +    +        +  L++  EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAE 57

Query: 128 ADMKKILEFDPSNNQA 143
               + +  D     A
Sbjct: 58  KAFTRSINRDKHLAVA 73

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 29/126 (23%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G   +   KY+ A+   + AL       R       +    Q      EV          
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQ----LRGNQLIDYKILGLQFKLFACEV---------- 123

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N    + K  +++++ ++   A  +      + I            ++A+  + K
Sbjct: 124 ---LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI------------DKAMECVWK 168

Query: 133 ILEFDP 138
              ++P
Sbjct: 169 QKLYEP 174

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 60.9 bits (149), Expect = 1e-12
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 33/131 (25%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL +                              P  AE  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELD-----------------------------PNNAE-- 44

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
                N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K
Sbjct: 45  --AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

Query: 133 ILEFDPSNNQA 143
            LE DP+N +A
Sbjct: 103 ALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 58.6 bits (143), Expect = 7e-12
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
             N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 136 FDPSNNQA 143
            DP+N +A
Sbjct: 72  LDPNNAEA 79

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 46.2 bits (111), Expect = 3e-07
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 40/105 (38%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL +                              P  AE  
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALEL-----------------------------DPNNAE-- 78

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH 117
                N G  + K G ++E+I+   KALEL+P         AEA 
Sbjct: 79  --AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAK 114

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
                   LK      ++    + +E +P Y+       + +E+L+  ++AI    + +E
Sbjct: 10  RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69

Query: 136 FDPSNNQAKRTILRKLKEMGN 156
                   K      L E+ +
Sbjct: 70  VAREEGTQKD-----LSELQD 85

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 35/118 (29%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
             +         AL  +E  +     P+   +                            
Sbjct: 14  AQEHLKHDNASRALALFEELVETD--PDYVGT---------------------------- 43

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIA 128
              + + G  + +L + +++I    + +E+       K L    +A  K E  E    
Sbjct: 44  ---YYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 58.6 bits (143), Expect = 4e-12
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
             N G  + K G ++E+I+   KALEL+P   +A      A+ K   ++EAI   +K LE
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 136 FDPSNNQA 143
            DP+N +A
Sbjct: 72  LDPNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 40/105 (38%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           GN  + +G Y+EA+  Y+ AL +                              P  AE  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-----------------------------DPNNAE-- 44

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH 117
                N G  + K G ++E+I+   KALEL+P         AEA 
Sbjct: 45  --AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAK 80

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 34/126 (26%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G      G+ ++A    + AL                            +   PE+    
Sbjct: 125 GLVYALLGERDKAEASLKQAL---------------------------ALEDTPEI---- 153

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
               S     +L +G+ +E++ +  KALE  P  +   +R A A       EEA      
Sbjct: 154 ---RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

Query: 133 ILEFDP 138
                 
Sbjct: 211 EHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 44/142 (30%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G +L+A G+Y+ AL  +E AL+                               P+  E  
Sbjct: 12  GVQLYALGRYDAALTLFERALKEN-----------------------------PQDPE-- 40

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH---------- 122
                      LKLG    +++     +   P Y+   +  +EA+  L            
Sbjct: 41  --ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG 98

Query: 123 -FEEAIADMKKILEFDPSNNQA 143
             E+A++ +K     +P     
Sbjct: 99  YLEQALSVLKDAERVNPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 15/68 (22%), Positives = 28/68 (41%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
               G+    LG+++ ++    +AL+ NP   +AL   A    KL     A+ + K ++ 
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 136 FDPSNNQA 143
             P     
Sbjct: 68  RTPRYLGG 75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 57.9 bits (141), Expect = 7e-11
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 25/149 (16%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAE--------------SASAPEAKEGQS--- 55
                  G    AL   +  +     P                   A   E  +G     
Sbjct: 46  ARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

Query: 56  -ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 114
            +  K      P  A      H  RG+ +  LG+ +++     +AL L     +     A
Sbjct: 104 LSVLKDAERVNPRYAP----LHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALA 158

Query: 115 EAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           E +  +   +EA+A   K LE  P +   
Sbjct: 159 ELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 15/153 (9%)

Query: 5   EANEAKLEGNKLFAEG---KYEEALLQYEVALRVA--SVPERAESASAPEAKEGQSASEK 59
                  + +     G       A       ++ +      RAE A     +  Q   ++
Sbjct: 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE 254

Query: 60  KEVAPAPEMAE---------LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKAL 110
           K++A      +           SI +  + +  L  GK +ES +     ++L  +++   
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NY 313

Query: 111 IRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           +   + +E      EA           P  N  
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 15/137 (10%), Positives = 37/137 (27%), Gaps = 33/137 (24%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           +   +    G   +  GK+++A   ++    +      A                     
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARY------------------- 54

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                           G C   LG +E++++  +    ++    +     AE H +L   
Sbjct: 55  ------------FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102

Query: 124 EEAIADMKKILEFDPSN 140
           + A +          + 
Sbjct: 103 DGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
            +  E         G    + GK++++ K       L+    +  +      + L  +E+
Sbjct: 15  EDTLEQ----LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 126 AIADMKKILEFDPSNNQA 143
           A+         D +  + 
Sbjct: 71  ALQSYSYGALMDINEPRF 88

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 16/119 (13%), Positives = 25/119 (21%), Gaps = 37/119 (31%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
           G    + G YE+AL  Y     +                                     
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMD--INEPRF---------------------------- 88

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                +   C L+LG  + +      A  L                +     EA+   K
Sbjct: 89  ---PFHAAECHLQLGDLDGAESGFYSARALAAAQPAH----EALAARAGAMLEAVTARK 140

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 12/68 (17%), Positives = 19/68 (27%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
               G+  LKL    E+        +  P   +A         + E    AI  +     
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 136 FDPSNNQA 143
            DP +   
Sbjct: 80  LDPKDIAV 87

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 33/127 (25%)

Query: 12  EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
           EG  +       EA L +E   +                               PE  E 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKE-----------------------------PEREE- 52

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                 + G+   +  K   +I     A  L+P  +      A +H    +   A+A ++
Sbjct: 53  ---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

Query: 132 KILEFDP 138
             L   P
Sbjct: 110 AWLLSQP 116

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 59  KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
           +  +A   +   L        G  + +  +F+ ++     AL+ +PTY  A     +  +
Sbjct: 9   EAMLAQGTDNMLL----RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64

Query: 119 KLEHFEEAIADMKKILEFDPSNNQAK-----RTILRKLKEMG 155
                  A    +  L    S    +     +  LR+L    
Sbjct: 65  GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 90  EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           +   +     L      M       + + + E F+ A+  ++  L+FDP+ + A
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 35/136 (25%)

Query: 5   EANEAKLEGNKLFA-EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           E +  +  G K    + + E+ L Q E  L   S    A+                    
Sbjct: 66  ETHSVEDAGRKQQDVQEEMEKTLQQMEEVL--GSAQVEAQ-------------------- 103

Query: 64  PAPEMAELRSICHSNRGICFLKLGKF-EESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                          +G        +  E+    +KA++L P  ++A  +  E + K   
Sbjct: 104 -----------ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD 152

Query: 123 FEEAIADMKKILEFDP 138
              A       L    
Sbjct: 153 VTSAHTCFSGALTHCK 168

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 11/69 (15%), Positives = 23/69 (33%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
           H NR         + E+++  ++A  L+P + +   R  +  E L      +    K   
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

Query: 136 FDPSNNQAK 144
               +    
Sbjct: 321 KKLQSMLGS 329

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 28/168 (16%)

Query: 13  GNKLFAEGKYEEALLQYEVALR-------------VASVPERAESASAPEAKEGQSASEK 59
           G   + +G    A   +  AL              V    +                  K
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 60  KEVAPAPEMAELRSICHSNRGICFL--------KLGKFEESIKECTKALELN---PTYMK 108
             V                 G  +L             ++++    +A +++    +   
Sbjct: 204 LAVQMDVLDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259

Query: 109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
             + RA  H+  E + EA+    +    DP+  + ++   + L+ +  
Sbjct: 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 87  GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-EEAIADMKKILEFDPSNNQA 143
            + E+++++  + L       +AL+ + +A      +  EA   + K ++ +P   +A
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 10/151 (6%), Positives = 37/151 (24%), Gaps = 35/151 (23%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           +  ++        + +G+ EEA + +             +                    
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDY------------------- 72

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                              +    +F+++      A  L       +    +   +L+  
Sbjct: 73  ------------IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120

Query: 124 EEAIADMKKILEFDPSNNQAKR--TILRKLK 152
            +A    + +++         +  + L  ++
Sbjct: 121 LKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 9/67 (13%), Positives = 25/67 (37%)

Query: 77  SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136
            +R +    L    + ++     L  +     A   R    ++ + ++  +  + ++L+ 
Sbjct: 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229

Query: 137 DPSNNQA 143
           D  NN  
Sbjct: 230 DVRNNSV 236

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 78  NRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136
            R +    L K   E +   T  +E  P   +    R    E L    + +  +  IL  
Sbjct: 136 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195

Query: 137 DPSNNQA---KRTILRKLK 152
           D  N  A   ++ ++++ K
Sbjct: 196 DAKNYHAWQHRQWVIQEFK 214

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 75  CHSNRGICFLKLGKFEESIKECTKALELNPTYMKA------LIRRAEAHEKLEHFEEAIA 128
              +R     +   ++  ++   + L+ +            +I     +      E  + 
Sbjct: 202 AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261

Query: 129 DMKKILEFDPSNNQA 143
              ++++  P N  A
Sbjct: 262 YTLEMIKLVPHNESA 276

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 30/126 (23%)

Query: 20  GKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNR 79
           G   +A+  YE A+      +                                   +   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAEC------------------------------YLGL 33

Query: 80  GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139
           G  F  LG++ ++       ++  P +    +  A     L  +E+ +  + KI+     
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 140 NNQAKR 145
           +   + 
Sbjct: 94  DETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 86  LGKFEESIKECTKALELN---PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142
           LG   +++    KA+          +  +        L  + +A A +   ++  P++  
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 143 A 143
            
Sbjct: 63  L 63

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIADMKKILEF 136
                 +  G  E +++   + L+  P    +A      A+ KL  +++A+ + +  +E 
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 137 DPSNNQAK 144
           +P +   +
Sbjct: 65  NPDSPALQ 72

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 12  EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
              +L  +G  E AL   E  L+    P   + A                          
Sbjct: 6   TIKELINQGDIENALQALEEFLQTE--PVGKDEA-------------------------- 37

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
               +   G  + KLG +++++     A+ELNP          +A + + 
Sbjct: 38  ----YYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA-----LQARKMVM 78

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 6/142 (4%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
                  +  +  F +   + AL        +  +    +       K  +    +KE+ 
Sbjct: 99  TNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQIL----LKLDRLDLARKELK 154

Query: 64  PAPEMAELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
              +  E  ++         L  G  K +++     +  +     +  L  +A  H    
Sbjct: 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214

Query: 122 HFEEAIADMKKILEFDPSNNQA 143
            +E A   +++ L+ D  + + 
Sbjct: 215 RWEAAEGVLQEALDKDSGHPET 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 12/138 (8%)

Query: 11  LEGNKLFAEGKYEEALLQYEVALRVA--SVPERAESASAPEAKEGQSASE-----KKEVA 63
           +    L    + + A  + +        +   +  +A    A  G+   +     ++   
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                  L     + +  C +  G++E +     +AL+ +  + + LI      + L   
Sbjct: 195 KCSPTLLL----LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250

Query: 124 EEAIAD-MKKILEFDPSN 140
            E     + ++ +   S+
Sbjct: 251 PEVTNRYLSQLKDAHRSH 268

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 4/130 (3%)

Query: 16  LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSIC 75
           L +  + +  + + +  +  +             A       +  + A           C
Sbjct: 75  LASHSRRDAIVAELDREMSRSVDVTNTTFLLM--AASIYFYDQNPDAALRTLHQGDSLEC 132

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL--EHFEEAIADMKKI 133
            +      LKL + + + KE  K  + +       +  A        E  ++A    +++
Sbjct: 133 MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192

Query: 134 LEFDPSNNQA 143
            +        
Sbjct: 193 ADKCSPTLLL 202

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 8/79 (10%), Positives = 22/79 (27%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
           +      + G +E++         L+    +  +      + +  ++ AI         D
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 138 PSNNQAKRTILRKLKEMGN 156
               +        L + G 
Sbjct: 86  IXEPRFPFHAAECLLQXGE 104

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 13/140 (9%), Positives = 35/140 (25%), Gaps = 33/140 (23%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA 63
           +   +        +  G YE+A   ++    +      +                     
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSR-------------------- 56

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                           G C   +G+++ +I   +    ++    +     AE   +    
Sbjct: 57  -----------FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105

Query: 124 EEAIADMKKILEFDPSNNQA 143
            EA + +    E   +  + 
Sbjct: 106 AEAESGLFLAQELIANXPEF 125

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 20/172 (11%)

Query: 17  FAEGKYEEALLQYEVALRVASVPERAES----ASAPEAKEGQSASE------KKEVAPAP 66
               + E A + +E AL     P+  E     A A    +    S+      ++ +   P
Sbjct: 149 CGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206

Query: 67  EMAELRSICHSNRGICFLKL----GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
           +   L         +   K+     +  E  K   +ALE  P     L   A+ + + + 
Sbjct: 207 DNQYL----KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKD 174
            ++AI  +KK LE+ P+N      I    +     ++          + + +
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 16/131 (12%), Positives = 38/131 (29%), Gaps = 14/131 (10%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
                 + + ++A+   + AL     P  A                +       ++ ++ 
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYI--PNNAY------------LHCQIGCCYRAKVFQVM 299

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
           ++  +        L     ++    KA E N    +     A  H   + +EEA    +K
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359

Query: 133 ILEFDPSNNQA 143
               + +    
Sbjct: 360 EFSKELTPVAK 370

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 29/232 (12%), Positives = 57/232 (24%), Gaps = 83/232 (35%)

Query: 5   EANEAKLEGNKLFAEGKYEEALL-------------------------QYEVALRVA--- 36
             +  + E  +L     YE  LL                           +V   ++   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 37  ----SVPERAESASAPEAKE------GQSAS----EKKEVAP-APEM--AELRS-ICHSN 78
               S+   + + +  E K                E     P    +    +R  +   +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 79  RGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK---KI 133
               +  +   K    I+     LE  P   + +       ++L  F            +
Sbjct: 346 N---WKHVNCDKLTTIIESSLNVLE--PAEYRKM------FDRLSVFPP---SAHIPTIL 391

Query: 134 LE---FDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSI 182
           L    FD   +     ++ KL         ++ +        K P     SI
Sbjct: 392 LSLIWFDVIKSDV-MVVVNKLH--------KYSL------VEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 25/111 (22%)

Query: 67  EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126
           E  E +   +  + I  +    F ++  +C    +      K+++ + E           
Sbjct: 10  ETGEHQ---YQYKDILSVFEDAFVDNF-DCKDVQD----MPKSILSKEE----------- 50

Query: 127 IADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF--GMSTDNFKAVKDP 175
              +  I+            +   L      ++ +F   +   N+K +  P
Sbjct: 51  ---IDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 89  FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147
             ++     KAL L+   + AL+  A       ++ +AI   +K+++ +       + +
Sbjct: 97  TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 21  KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRG 80
           K++    +Y+         +     ++ +  E Q  + + ++   P+ +E      +  G
Sbjct: 2   KWQAVRAEYQ------RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQ----WALLG 51

Query: 81  ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA---HEKLEHFEEAIADMKKILEFD 137
             +L    +  S+    +AL+L     +     A             +  A + K L  D
Sbjct: 52  EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD 111

Query: 138 PSNNQA 143
            +   A
Sbjct: 112 SNEITA 117

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 33/144 (22%)

Query: 20  GKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNR 79
             Y++AL   E AL +A                       + +A          I   N 
Sbjct: 196 KHYDKALPHLEAALELA-----------------MDIQNDRFIA----------ISLLNI 228

Query: 80  GICFLKLGKFEESIKECTKALELN-----PTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134
              + + G  + +++   KA +++         K L   +    K    ++A   +++ L
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288

Query: 135 EFDPS-NNQAKRTILRKLKEMGNS 157
           +   + +++  + +   L+ +   
Sbjct: 289 DHITARSHKFYKELFLFLQAVYKE 312

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 35/137 (25%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
              E  LEG +L   G     +  +E A++V +           E  +  SA        
Sbjct: 8   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-----------EDLKTLSAI------- 49

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHE 118
                      +S  G  +  L  + ++++     L L           KA        +
Sbjct: 50  -----------YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98

Query: 119 KLEHFEEAIADMKKILE 135
            L +F+EAI   ++ L+
Sbjct: 99  VLGNFDEAIVCCQRHLD 115

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 7/158 (4%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA---PEAKEGQSASEKKE 61
              +   + ++L  +G++ +AL   +          R +   A      +  Q    ++ 
Sbjct: 5   PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQEL 62

Query: 62  VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
           +A  P   +  S       +   +       +K   + L  NP   +     A  + ++ 
Sbjct: 63  LATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG 122

Query: 122 HFEEAIADMKKILEFDPSNN--QAKRTILRKLKEMGNS 157
             EEA+  +  IL+ +      + K+T +  L  +G  
Sbjct: 123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.89
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.88
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.86
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.86
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.86
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.84
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.84
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.84
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.83
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.83
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.83
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.83
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.82
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.81
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.81
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.81
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.8
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.8
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.8
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.8
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.79
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.79
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.79
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.77
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.76
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.76
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.74
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.74
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.72
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.7
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.68
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.68
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.67
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.67
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.67
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.67
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.66
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.64
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.64
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.63
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.62
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.62
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.57
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.55
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.55
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.55
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.54
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.54
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.53
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.51
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.51
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.45
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.43
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.41
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.4
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.39
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.33
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.33
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.25
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.24
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.18
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.17
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.11
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.08
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.06
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.02
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.9
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.9
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.72
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.7
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.4
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.38
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.35
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.23
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.23
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.13
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.97
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.88
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.77
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.73
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.67
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.61
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.21
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.9
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.82
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.77
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.67
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.6
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.54
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.51
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.43
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.73
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.67
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.65
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.62
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.11
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.97
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.45
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.45
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.33
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.9
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.58
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.48
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	91.46
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	91.09
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	90.7
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	90.62
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.59
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.37
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	88.88
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	88.8
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	88.62
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	88.44
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.29
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	86.6
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	86.34
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	86.25
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	84.62
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.58
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	83.29
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	81.95
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	81.56
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	80.65

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=1.8e-28  Score=162.49  Aligned_cols=169  Identities=14%  Similarity=0.139  Sum_probs=150.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +.+..++.+|.++...|++++|+.+|+++++++|+++.++..+|.++ ..++.+.+...+.......+..+.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999887 55666555555444444444456899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +...++++.|+..+.+++..+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++..     +|++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-----~g~~  157 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-----KGLR  157 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-----CCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999     9999


Q ss_pred             cccchhhhhcccCCC
Q 044796          163 GMSTDNFKAVKDPNT  177 (186)
Q Consensus       163 ~~A~~~~~~~~~~~~  177 (186)
                      ++|+.+|+++++.+|
T Consensus       158 ~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          158 DEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHhCCc
Confidence            999999999964443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=2.5e-26  Score=156.30  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=146.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.+. ..++.+.+...+.......|.++.++..+|.++
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY   83 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999887 556666666555544444455568999999999


Q ss_pred             hhh-----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           84 LKL-----------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        84 ~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      ...           |++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++ +++.++..+|.++.
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~  162 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL  162 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence            999           999999999999999999999999999999999999999999999999999 99999999999998


Q ss_pred             HHHHHhhccccccchhhhhcccCCC
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .     .|++++|+..|++++..+|
T Consensus       163 ~-----~g~~~~A~~~~~~al~~~P  182 (217)
T 2pl2_A          163 S-----MGRLDEALAQYAKALEQAP  182 (217)
T ss_dssp             H-----HTCHHHHHHHHHHHHHHST
T ss_pred             H-----cCCHHHHHHHHHHHHHhCC
Confidence            8     9999999999998864333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.94  E-value=5.6e-26  Score=177.67  Aligned_cols=166  Identities=20%  Similarity=0.209  Sum_probs=151.7

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      .+.++++.++|.++...|++++|+.+|+++++++|++..++..+|.++ ..++.+++...+.......|..+.++.++|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999987 5566666666555444445556699999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.+++.++..     +++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~-----~g~  160 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI-----VCD  160 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh-----ccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999     999


Q ss_pred             ccccchhhhhcc
Q 044796          162 FGMSTDNFKAVK  173 (186)
Q Consensus       162 ~~~A~~~~~~~~  173 (186)
                      +++|++.+++++
T Consensus       161 ~~~A~~~~~kal  172 (723)
T 4gyw_A          161 WTDYDERMKKLV  172 (723)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998774

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.94  E-value=2.9e-25  Score=138.67  Aligned_cols=115  Identities=29%  Similarity=0.538  Sum_probs=110.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.++.+.++|..++..|+|++|+.+|+++++++|.                                 ++.+|..+|.++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---------------------------------~~~~~~~~~~~~   57 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---------------------------------NAILYSNRAACL   57 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------CHHHHHHHhhHH
Confidence            57899999999999999999999999999999999                                 338899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus        58 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           58 TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=3.7e-25  Score=150.51  Aligned_cols=163  Identities=15%  Similarity=0.075  Sum_probs=133.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hh-----------cCchhHHHhhCCCcchhHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KE-----------GQSASEKKEVAPAPEMAEL   71 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~   71 (186)
                      +.+..++.+|.++...|++++|+..|+++++++|+++.++..+|.+. ..           ++.+.+...+.......|.
T Consensus        37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~  116 (217)
T 2pl2_A           37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR  116 (217)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence            34678999999999999999999999999999999999999999887 44           5556665555444444455


Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+.++..+|.++...|++++|+..|+++++++ +++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus       117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~  195 (217)
T 2pl2_A          117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL  195 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            66999999999999999999999999999999 99999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhhccccccchhhhhc
Q 044796          152 KEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ..     .|++++|+..|+++
T Consensus       196 ~~-----~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          196 LL-----KGKAEEAARAAALE  211 (217)
T ss_dssp             TC-------------------
T ss_pred             HH-----ccCHHHHHHHHHHH
Confidence            88     99999999999876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=3.8e-24  Score=146.24  Aligned_cols=173  Identities=13%  Similarity=0.113  Sum_probs=147.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccC-CChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVAS-VPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .++.++.+|.+++..|++++|+.+|+++++++| .+..+++.+|.+. ..++.+.+...+.......|..+.++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            368899999999999999999999999999999 8888888888887 55666665555444334444456999999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYM-------KALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKLKE  153 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~  153 (186)
                      +..+|++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++++|+  ++.++..+|.++..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            9999999999999999999999998       67999999999999999999999999999999  99999999999988


Q ss_pred             HHHH----------------------hhccccccchhhhhcccCCC
Q 044796          154 MGNS----------------------ILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       154 ~~~~----------------------~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .|..                      ..+.+++|+.+|++++..+|
T Consensus       166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  211 (228)
T 4i17_A          166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP  211 (228)
T ss_dssp             HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            7765                      12345889999998864333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=1.6e-24  Score=158.64  Aligned_cols=167  Identities=9%  Similarity=-0.007  Sum_probs=146.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcC-chhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQ-SASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +.++.+..+|.++...|++++|+..|++++.++|++..+|..+|.++ ..+. .+.+...+.......|.+..+|.++|.
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~  174 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999887 4454 666666555555555556699999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ++..+|++++|+.+|++++.++|++..+|+.+|.++..+|++++|+.+|+++++++|++..+|.++|.++..     ++.
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~-----l~~  249 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN-----TTG  249 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998877     444


Q ss_pred             c-ccc-----chhhhhcccC
Q 044796          162 F-GMS-----TDNFKAVKDP  175 (186)
Q Consensus       162 ~-~~A-----~~~~~~~~~~  175 (186)
                      + ++|     +.+|++++..
T Consensus       250 ~~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHH
Confidence            4 677     4888888533

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.91  E-value=3.4e-23  Score=139.96  Aligned_cols=157  Identities=12%  Similarity=0.099  Sum_probs=133.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.++..|..++..|++++|+.+|+++++.+|+++.+++..+...                 .....+.....+|.++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----------------~~~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK-----------------NSEISSKLATELALAYK   65 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCT-----------------TSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcc-----------------hhhhhHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999887776533211                 11123456677999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH--------
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN--------  156 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--------  156 (186)
                      ..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|.        
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988755442        


Q ss_pred             ----------------------HhhccccccchhhhhcccCCCC
Q 044796          157 ----------------------SILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       157 ----------------------~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                                            ...|++++|+.+|++++..+|+
T Consensus       146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence                                  1256788999999998755544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=2.1e-24  Score=138.78  Aligned_cols=127  Identities=12%  Similarity=0.042  Sum_probs=113.5

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEE   91 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (186)
                      +|.++...|++++|+..+++++..+|+                                 .+..++.+|.+|...|++++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---------------------------------~~~~~~~la~~y~~~~~~~~   49 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ---------------------------------KSIKGFYFAKLYYEAKEYDL   49 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH---------------------------------HHTTHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc---------------------------------cHHHHHHHHHHHHHcCCHHH
Confidence            688888999999999999999998888                                 44778899999999999999


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhh-h
Q 044796           92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF-K  170 (186)
Q Consensus        92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~-~  170 (186)
                      |+.+|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++..     .+++++|.+.| +
T Consensus        50 A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~aa~~~~~  124 (150)
T 4ga2_A           50 AKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-----NDVTDGRAKYWVE  124 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999     99999888764 7


Q ss_pred             hcc--cCC
Q 044796          171 AVK--DPN  176 (186)
Q Consensus       171 ~~~--~~~  176 (186)
                      +++  +|+
T Consensus       125 ~al~l~P~  132 (150)
T 4ga2_A          125 RAAKLFPG  132 (150)
T ss_dssp             HHHHHSTT
T ss_pred             HHHHhCcC
Confidence            775  554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.90  E-value=8.1e-23  Score=130.41  Aligned_cols=130  Identities=23%  Similarity=0.286  Sum_probs=114.8

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +..+..++..|+.++..|+|++|+.+|+++|+++|+++..-                     .....+.++.+|.++|.+
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---------------------a~~~~~~~a~a~~n~g~a   66 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---------------------AFDHAGFDAFCHAGLAEA   66 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---------------------CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---------------------hhhhccchHHHHHHHHHH
Confidence            46788999999999999999999999999999999965430                     112233456799999999


Q ss_pred             HhhhccHHHHHHHHHHHHhc-------CcccHHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALEL-------NPTYMKAL----IRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~-------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      +..+|+|++|+.+|++++++       +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+.
T Consensus        67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            99999999999999999999       99999999    99999999999999999999999999999988877777655


Q ss_pred             HH
Q 044796          152 KE  153 (186)
Q Consensus       152 ~~  153 (186)
                      ..
T Consensus       147 ~~  148 (159)
T 2hr2_A          147 EV  148 (159)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.89  E-value=2.9e-22  Score=128.74  Aligned_cols=117  Identities=13%  Similarity=0.112  Sum_probs=108.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|.+++..|++++|+.+|+++++++|++                                 +.+|..+|.++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------------------------------~~a~~~lg~~~   75 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------------------------------PKAHRFLGLLY   75 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHH
Confidence            456678899999999999999999999999999993                                 38999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAD-MKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++..
T Consensus        76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           76 ELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887765 599999999999999999888776

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.89  E-value=1.9e-21  Score=126.27  Aligned_cols=131  Identities=25%  Similarity=0.332  Sum_probs=113.5

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc--------CCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA--------SVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRS   73 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (186)
                      +++.+..+...|..++..|+|++|+.+|.+++.+.        |.++..                       ....+...
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~   63 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNI   63 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHH
Confidence            46789999999999999999999999999999983        332110                       11134456


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN-QAKRTILRKLK  152 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~  152 (186)
                      .++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+..
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999 77888887776


Q ss_pred             HHH
Q 044796          153 EMG  155 (186)
Q Consensus       153 ~~~  155 (186)
                      .+.
T Consensus       144 ~~~  146 (162)
T 3rkv_A          144 RRA  146 (162)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            633

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=9.9e-23  Score=149.14  Aligned_cols=164  Identities=9%  Similarity=0.009  Sum_probs=142.6

Q ss_pred             hHHHHHHHhHhHHHHccc-HHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGK-YEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +.+..|+.+|.++...|+ +++|+.+|++++.++|++..+|..+|.++ ..++...+...+.......|.+..+|.++|.
T Consensus       129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~  208 (382)
T 2h6f_A          129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  208 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence            346789999999999997 99999999999999999999999999887 5566666655554444444555699999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hcCHHHH-----HHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK-LEHFEEA-----IADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      ++..+|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++|     +.+|++++.++|++..+|..++.++..  
T Consensus       209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~--  286 (382)
T 2h6f_A          209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--  286 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc--
Confidence            99999999999999999999999999999999999999 5555777     599999999999999999999988887  


Q ss_pred             HHhhc--cccccchhhhhc
Q 044796          156 NSILG--RFGMSTDNFKAV  172 (186)
Q Consensus       156 ~~~~~--~~~~A~~~~~~~  172 (186)
                         .|  ++++|++.+..+
T Consensus       287 ---~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          287 ---RGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             ---TCGGGCHHHHHHHHHH
T ss_pred             ---cCccchHHHHHHHHHh
Confidence               55  678888888766

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.88  E-value=2.1e-22  Score=140.30  Aligned_cols=171  Identities=13%  Similarity=0.179  Sum_probs=145.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC---hhhhhccchhh-hhcCchhHHHhhCCCcchh---HHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP---ERAESASAPEA-KEGQSASEKKEVAPAPEMA---ELRSICH   76 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~   76 (186)
                      ..++.++.+|..++..|++++|+..|+++++.+|.+   +.+++.+|.++ ..++...+...+.......   +..+.++
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            357889999999999999999999999999999999   88899999887 5566655555443322221   2345889


Q ss_pred             HHHHHHHhh--------hccHHHHHHHHHHHHhcCcccHHHH-----------------HHHHHHHHHhcCHHHHHHHHH
Q 044796           77 SNRGICFLK--------LGKFEESIKECTKALELNPTYMKAL-----------------IRRAEAHEKLEHFEEAIADMK  131 (186)
Q Consensus        77 ~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~  131 (186)
                      +.+|.++..        .|++++|+..|++++..+|+++.+.                 +.+|.++...|++++|+..|+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999        9999999999999999999886655                 889999999999999999999


Q ss_pred             HHHhcCCC---ChHHHHHHHHHHHHHHHH-----hhccccccchhhhhccc
Q 044796          132 KILEFDPS---NNQAKRTILRKLKEMGNS-----ILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       132 ~al~~~p~---~~~~~~~l~~~~~~~~~~-----~~~~~~~A~~~~~~~~~  174 (186)
                      ++++..|+   .+.++..+|.++..+|..     ..|++++|+..|++++.
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            99999998   567899999999997765     23999999999998863

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.6e-22  Score=135.84  Aligned_cols=164  Identities=18%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHH-------HHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELR-------SIC   75 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~   75 (186)
                      ..++.+..+|.+++..|++++|+.+|+++++.+ .++.++..+|.+. ..++.+.+...+.......|..       +.+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            356667777777777777777777777777766 6666666666555 3344443333332222222211       456


Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHh--------------------------cCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALE--------------------------LNPTYMKALIRRAEAHEKLEHFEEAIAD  129 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~  129 (186)
                      +..+|.++...|++++|+..+++++.                          .+|.++.++..+|.++...|++++|+..
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  161 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA  161 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66666666666666666666666666                          5555566666666666666666666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          130 MKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       130 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      |+++++.+|.++.++..+|.++..     .|++++|+..|++++
T Consensus       162 ~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          162 YTEMIKRAPEDARGYSNRAAALAK-----LMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHH
Confidence            666666666666666666666665     666666666666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.5e-21  Score=120.54  Aligned_cols=117  Identities=26%  Similarity=0.456  Sum_probs=110.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..++.++.+|..++..|++++|+.+|+++++++|++                                 +.++..+|.++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------~~~~~~~a~~~   48 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------------------------ARGYSNRAAAL   48 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------------------------hHHHHHHHHHH
Confidence            468899999999999999999999999999999993                                 38899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD------PSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  153 (186)
                      ..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++      |.+..++..+..+...
T Consensus        49 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           49 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999      9999999988876654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=8.8e-23  Score=153.58  Aligned_cols=161  Identities=16%  Similarity=0.159  Sum_probs=139.4

Q ss_pred             HHHHHHHhHhHHHHcccH-HHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKY-EEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   78 (186)
                      .+..++.+|.++...|++ ++|+.+|+++++++|+++.++..+|.++ ..++.+.+.    +++...|.     ..++..
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~  175 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----KVSLQN  175 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----HHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----HHHHHH
Confidence            467889999999999999 9999999999999999999999999887 445554444    44555553     388899


Q ss_pred             HHHHHhhh---------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCC---
Q 044796           79 RGICFLKL---------GKFEESIKECTKALELNPTYMKALIRRAEAHEKL--------EHFEEAIADMKKILEFDP---  138 (186)
Q Consensus        79 ~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---  138 (186)
                      +|.++...         |++++|+..++++++++|+++.+|+.+|.++..+        |++++|+..|+++++++|   
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  255 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS  255 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence            99999999         9999999999999999999999999999999999        999999999999999999   


Q ss_pred             CChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          139 SNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       139 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .++.++..+|.++..     .|++++|+..|++++..
T Consensus       256 ~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          256 SNPDLHLNRATLHKY-----EESYGEALEGFSQAAAL  287 (474)
T ss_dssp             GCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh
Confidence            899999999998888     89999999999988533

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.88  E-value=2.3e-21  Score=124.39  Aligned_cols=105  Identities=9%  Similarity=0.092  Sum_probs=81.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.++.++.+|..++..|++++|+.+|++++.++|.                                 ++.+|..+|.++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---------------------------------~~~~~~~lg~~~   80 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---------------------------------NVDYIMGLAAIY   80 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHH
Confidence            45667777788888888888888888888888777                                 236777778888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus        81 ~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            8888888888888888888888888888888888888888888888888888777654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.88  E-value=3.2e-23  Score=133.05  Aligned_cols=99  Identities=11%  Similarity=-0.049  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            55899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhcccC
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ..     +|++++|+.+|++++..
T Consensus       115 ~~-----lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LR-----LKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HH-----TTCHHHHHHHHHHHHHH
T ss_pred             HH-----cCCHHHHHHHHHHHHHh
Confidence            99     99999999999998643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=5.1e-22  Score=145.42  Aligned_cols=164  Identities=21%  Similarity=0.162  Sum_probs=112.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+.+|++++..+|++..++..+|... ..++.+.+...+.......|....++..+|.++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3567888888899999999999999999999998888888887765 445554444433322222333346666677777


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++..     .++++
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~~~~~  220 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE-----ARIFD  220 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----TTCTT
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----cCCHH
Confidence            7777777777777777777777777777777777777777777777777777777666666666666555     55555


Q ss_pred             ccchhhhhcc
Q 044796          164 MSTDNFKAVK  173 (186)
Q Consensus       164 ~A~~~~~~~~  173 (186)
                      +|+..|++++
T Consensus       221 ~A~~~~~~al  230 (388)
T 1w3b_A          221 RAVAAYLRAL  230 (388)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=9.3e-22  Score=134.96  Aligned_cols=167  Identities=17%  Similarity=0.067  Sum_probs=141.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+.+|+++++.+|.+..++..++.+. ..++.+.+...+.......+..+.++..+|.++
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  135 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL  135 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4677888999999999999999999999999999999998888876 455555555544433333334458899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++..     .|+++
T Consensus       136 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~  210 (243)
T 2q7f_A          136 VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY-----KENRE  210 (243)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCTT
T ss_pred             HHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----ccCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988888     99999


Q ss_pred             ccchhhhhcccCC
Q 044796          164 MSTDNFKAVKDPN  176 (186)
Q Consensus       164 ~A~~~~~~~~~~~  176 (186)
                      +|+..|++++..+
T Consensus       211 ~A~~~~~~~~~~~  223 (243)
T 2q7f_A          211 KALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHccC
Confidence            9999999886433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=1.1e-21  Score=143.57  Aligned_cols=163  Identities=16%  Similarity=0.142  Sum_probs=97.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..+..+|.++...|++++|+..|+++++++|+++.++..+|.+. ..+..+.+...+.......|.++.++..+|.++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            455666677777777777777777777777777776666666555 3333333333222222222233356666666666


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      ..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..++.++..     .|++++
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~  323 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-----QGNIEE  323 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----TTCHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-----cCCHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666655555     555555


Q ss_pred             cchhhhhcc
Q 044796          165 STDNFKAVK  173 (186)
Q Consensus       165 A~~~~~~~~  173 (186)
                      |+..|++++
T Consensus       324 A~~~~~~al  332 (388)
T 1w3b_A          324 AVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            555555554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=7e-22  Score=143.54  Aligned_cols=164  Identities=16%  Similarity=0.192  Sum_probs=130.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHh----hCCCcc------------
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKE----VAPAPE------------   67 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~------------   67 (186)
                      .+..+..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ..++.+.+...    +...|.            
T Consensus        98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  177 (365)
T 4eqf_A           98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP  177 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence            3566778888888888888888888888888888888877777655 33333222221    111111            


Q ss_pred             ----------------------------hhHH--HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 044796           68 ----------------------------MAEL--RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH  117 (186)
Q Consensus        68 ----------------------------~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  117 (186)
                                                  ..|.  .+.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  257 (365)
T 4eqf_A          178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL  257 (365)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                                        1111  4578889999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          118 EKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       118 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ...|++++|+..|+++++++|+++.++..+|.++..     .|++++|+..|++++
T Consensus       258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-----LGAYREAVSNFLTAL  308 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988     899999999998885

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.88  E-value=6.9e-22  Score=130.01  Aligned_cols=165  Identities=18%  Similarity=0.237  Sum_probs=147.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.+. ..++.+.+...+.......+..+.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999998876 55666555555443333344456899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..++.++..     .|++
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~  160 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-----MGRH  160 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-----cCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998     9999


Q ss_pred             cccchhhhhcc
Q 044796          163 GMSTDNFKAVK  173 (186)
Q Consensus       163 ~~A~~~~~~~~  173 (186)
                      ++|+..+++++
T Consensus       161 ~~A~~~~~~~~  171 (186)
T 3as5_A          161 EEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999885

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.3e-22  Score=137.57  Aligned_cols=163  Identities=17%  Similarity=0.185  Sum_probs=137.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC-------hhhhhccchhh-hhcCchhHHHhhCCCcc----------
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP-------ERAESASAPEA-KEGQSASEKKEVAPAPE----------   67 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------   67 (186)
                      +..+..+|.++...|++++|+.+|+++++.+|.+       +.++..+|.+. ..++.+.+...+.....          
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  117 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK  117 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence            4567888888888888888888888888888876       56777777665 44444443333222111          


Q ss_pred             ----------------hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 044796           68 ----------------MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK  131 (186)
Q Consensus        68 ----------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (186)
                                      ..|..+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                            3455678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          132 KILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       132 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ++++.+|+++.++..+|.++..     .|++++|+..|++++
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIA-----VKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHH
Confidence            9999999999999999999999     999999999999885

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.87  E-value=1.6e-21  Score=132.07  Aligned_cols=165  Identities=20%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+..+..+|..++..|++++|+.+|+++++.+|.++.++..+|.+. ..++.+.+...+.......+..+.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            56778888999999999999999999999999999888888888776 44555555544433333333445788888999


Q ss_pred             Hhhh-ccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796           83 FLKL-GKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        83 ~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  159 (186)
                      +... |++++|+..++++++  .+|..+.++..+|.++...|++++|+..++++++..|.++.++..++.++..     .
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~  160 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML-----A  160 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-----H
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-----c
Confidence            9999 999999999999988  6677788888999999999999999999999999999988888888888888     8


Q ss_pred             ccccccchhhhhcc
Q 044796          160 GRFGMSTDNFKAVK  173 (186)
Q Consensus       160 ~~~~~A~~~~~~~~  173 (186)
                      |++++|+..+++++
T Consensus       161 ~~~~~A~~~~~~~~  174 (225)
T 2vq2_A          161 GQLGDADYYFKKYQ  174 (225)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            88888888888775

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=1.8e-21  Score=146.43  Aligned_cols=161  Identities=14%  Similarity=0.140  Sum_probs=138.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh----------cCchhHHHhhCCCcchhHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE----------GQSASEKKEVAPAPEMAELRSI   74 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~   74 (186)
                      .+..+..+|.++...|++++|+.+|+++++++|+ ..++..+|.++..          ++.+.+...+.......|.++.
T Consensus       136 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  214 (474)
T 4abn_A          136 LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR  214 (474)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence            4678999999999999999999999999999999 6888888887733          4445555444443344445569


Q ss_pred             HHHHHHHHHhhh--------ccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           75 CHSNRGICFLKL--------GKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        75 ~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      +|..+|.++...        |++++|+..|+++++++|   +++.+++.+|.++..+|++++|+..|+++++++|+++.+
T Consensus       215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a  294 (474)
T 4abn_A          215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP  294 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999        999999999999999999   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhh
Q 044796          144 KRTILRKLKEMGNSILGRFGMSTDNFKA  171 (186)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~  171 (186)
                      +..++.++..     ++++++|++.+.+
T Consensus       295 ~~~l~~~~~~-----lg~~~eAi~~~~~  317 (474)
T 4abn_A          295 QQREQQLLEF-----LSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHH-----HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHhcc
Confidence            9999999999     6666666665543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=2.5e-21  Score=120.77  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           70 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      |..+..+..+|..+++.|+|++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   89 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796          150 KLKEMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       150 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                      ++..     +|++++|+..|++++..+|+.
T Consensus        90 ~~~~-----~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           90 CLVA-----MREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHH-----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHH-----CCCHHHHHHHHHHHHHHCcCC
Confidence            9999     999999999999996444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=2.4e-21  Score=140.68  Aligned_cols=165  Identities=12%  Similarity=0.058  Sum_probs=137.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..++.+|..++..|++++|+.+|+++++.+|+++.++..+|.++ ..++.+.+...+.......|..+.++..+|.++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT  144 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            345899999999999999999999999999999999999999887 5566666665554444444445688888888888


Q ss_pred             hhccHHHHHHHHHHHHhcCcc----------------------------------------------cHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPT----------------------------------------------YMKALIRRAEAHE  118 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~----------------------------------------------~~~~~~~lg~~~~  118 (186)
                      ..|++++|+..++++++.+|+                                              ++.++..+|.++.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            888888888888887776654                                              6778888899999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       119 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ..|++++|+..|+++++++|+++.++..+|.++..     .|++++|+..|++++..
T Consensus       225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-----GDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988888     88899999999888643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.86  E-value=1.6e-20  Score=117.26  Aligned_cols=110  Identities=21%  Similarity=0.314  Sum_probs=99.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+.++.++|+.++..|+|++|+.+|+++++++|++                                 +.+|.++|.++
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------------------------~~~~~nlg~~~   52 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------------------------ITFYNNKAAVY   52 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------HHHHHhHHHHH
Confidence            568889999999999999999999999999999993                                 38899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ..+|++++|+..++++++++|++       ..++.++|.++..+|++++|+..|++++..+|+ ++....+
T Consensus        53 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           53 FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            99999999999999999998876       358899999999999999999999999999885 5554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=2.8e-21  Score=134.82  Aligned_cols=165  Identities=12%  Similarity=0.050  Sum_probs=138.8

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSNRG   80 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a   80 (186)
                      ++.++..|.+++..|++++|+..|+++++.+|.++.++..+|.+. ..++.+.+.    .++. .+......+.++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999877 445554444    3344 3333333467799999


Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG  160 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  160 (186)
                      .++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|.....     .+
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~~  156 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-----NK  156 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-----TT
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-----HH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999943333     45


Q ss_pred             cccccchhhhhcccCC
Q 044796          161 RFGMSTDNFKAVKDPN  176 (186)
Q Consensus       161 ~~~~A~~~~~~~~~~~  176 (186)
                      ++++|+..|++++...
T Consensus       157 ~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A          157 EYVKADSSFVKVLELK  172 (272)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            8889999998886433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.86  E-value=3.3e-21  Score=133.15  Aligned_cols=163  Identities=16%  Similarity=0.040  Sum_probs=88.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcc--hhHHHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPE--MAELRSICHSNRGIC   82 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~   82 (186)
                      +..+..+|.++...|++++|+.+|+++++.+|.+..++..++.++ ..++.+.+...+.....  ..+..+.++..+|.+
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555444 33333333332221111  222334555556666


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..++.++..     .|++
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~  225 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV-----FEDR  225 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-----TTCH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-----ccCH
Confidence            66666666666666666666665566666666666666666666666666666666655555555555555     5566


Q ss_pred             cccchhhhhcc
Q 044796          163 GMSTDNFKAVK  173 (186)
Q Consensus       163 ~~A~~~~~~~~  173 (186)
                      ++|...+++++
T Consensus       226 ~~A~~~~~~~~  236 (252)
T 2ho1_A          226 DTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.86  E-value=1.3e-20  Score=133.21  Aligned_cols=164  Identities=16%  Similarity=0.099  Sum_probs=149.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .++.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++ ..++.+.+...+.......|.........+..+
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999999999887 678888888888887777766666777777888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhhcc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN--NQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++  ..++..++.++..     .|+
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-----~g~  270 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-----LGT  270 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-----HCT
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-----cCC
Confidence            889999999999999999999999999999999999999999999999999999998  8899999999999     899


Q ss_pred             ccccchhhhhcc
Q 044796          162 FGMSTDNFKAVK  173 (186)
Q Consensus       162 ~~~A~~~~~~~~  173 (186)
                      .++|+..|.+++
T Consensus       271 ~~~a~~~~r~al  282 (287)
T 3qou_A          271 GDALASXYRRQL  282 (287)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            999999888764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.86  E-value=9.3e-21  Score=130.87  Aligned_cols=169  Identities=14%  Similarity=0.103  Sum_probs=149.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..++.+|..+...|++++|+.+|+++++.+|.++.++..+|.+. ..++.+.+...+.......+..+.++..+|.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999877 556666555554433333344568999999999


Q ss_pred             hhhccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           84 LKLGKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ...|++++|+..+++++.  .+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..++.++..     .|+
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~  190 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-----ERE  190 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTC
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCC
Confidence            999999999999999999  8899999999999999999999999999999999999999999999999999     999


Q ss_pred             ccccchhhhhcccCCCC
Q 044796          162 FGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       162 ~~~A~~~~~~~~~~~~~  178 (186)
                      +++|+..+++++...+.
T Consensus       191 ~~~A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          191 YVPARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHhCcC
Confidence            99999999988654433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.86  E-value=6.9e-22  Score=135.60  Aligned_cols=166  Identities=14%  Similarity=0.082  Sum_probs=129.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.+. ..++.+.+...+.......+..+.++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999877 556665555554433333444568999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.++.++..++.++..     .|+++
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~  176 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-----EGMLD  176 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCCH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----cCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988     99999


Q ss_pred             ccchhhhhcccC
Q 044796          164 MSTDNFKAVKDP  175 (186)
Q Consensus       164 ~A~~~~~~~~~~  175 (186)
                      +|+..|++++..
T Consensus       177 ~A~~~~~~~~~~  188 (243)
T 2q7f_A          177 EALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=7.2e-21  Score=137.10  Aligned_cols=89  Identities=20%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  159 (186)
                      |.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..++.++..     .
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~  201 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-----L  201 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-----H
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----c
Confidence            34444445555555555555555555555555555555555555555555555555555555555555555544     5


Q ss_pred             ccccccchhhhhcc
Q 044796          160 GRFGMSTDNFKAVK  173 (186)
Q Consensus       160 ~~~~~A~~~~~~~~  173 (186)
                      |++++|+..|++++
T Consensus       202 ~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          202 GDHELSLSEVRECL  215 (359)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555555555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.86  E-value=5.2e-21  Score=125.86  Aligned_cols=162  Identities=16%  Similarity=0.116  Sum_probs=139.5

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+.++..|..+...|++++|+..|+++++.+|+++.++..+|.++ ..++.+.+...+.......| ++..+...+.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            345788999999999999999999999999999999999999887 66777888888877776666 5555555554432


Q ss_pred             -hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhhcc
Q 044796           85 -KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN--NQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        85 -~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~  161 (186)
                       ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..++.++..     .|+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-----~g~  159 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-----LGQ  159 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-----HCS
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-----hCC
Confidence             33344568999999999999999999999999999999999999999999999975  5699999999999     999


Q ss_pred             ccccchhhhhcc
Q 044796          162 FGMSTDNFKAVK  173 (186)
Q Consensus       162 ~~~A~~~~~~~~  173 (186)
                      .++|+..|++++
T Consensus       160 ~~~A~~~y~~al  171 (176)
T 2r5s_A          160 GNAIASKYRRQL  171 (176)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=3.9e-21  Score=137.23  Aligned_cols=168  Identities=17%  Similarity=0.134  Sum_probs=121.8

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..+..+|.++...|++++|+.+|+++++..|.+..++..+|.+. ..++.+.+...+.......|..+.++..+|.++.
T Consensus       125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  204 (330)
T 3hym_B          125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF  204 (330)
T ss_dssp             THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            345666777777777777777777777777777666666666655 3344444433332222222334477888888888


Q ss_pred             hhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      ..|++++|+..+++++...         |..+.++..+|.++...|++++|+..|+++++++|+++.++..++.++..  
T Consensus       205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--  282 (330)
T 3hym_B          205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL--  282 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH--
T ss_pred             HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH--
Confidence            8888888888888888875         66677888888888888888888888888888888888888888888888  


Q ss_pred             HHhhccccccchhhhhcccCCCC
Q 044796          156 NSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                         .|++++|+..|++++..+|.
T Consensus       283 ---~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          283 ---MGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             ---HTCHHHHHHHHHTTTTTCSC
T ss_pred             ---hccHHHHHHHHHHHHccCCC
Confidence               88888888888888644443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.86  E-value=3.6e-20  Score=120.45  Aligned_cols=121  Identities=23%  Similarity=0.304  Sum_probs=109.2

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ...+..++.+|.+++..|++++|+.+|+++++++|.                                 ++.++..+|.+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------------------~~~~~~~l~~~   54 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---------------------------------NPIYLSNRAAA   54 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------------------------CHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------------------------CHHHHHHHHHH
Confidence            357889999999999999999999999999999999                                 23889999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH--HHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL--RKLKEMGN  156 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~  156 (186)
                      +...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++...+  .+...++.
T Consensus        55 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           55 YSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE  130 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998655554  34444333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.86  E-value=2.4e-20  Score=119.47  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|..++..|++++|+..|++++..+|.+                                 +.+|..+|.++
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------~~~~~~lg~~~   65 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------------------------SRFFLGLGACR   65 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------------------------HHHHHHHHHHH
Confidence            457789999999999999999999999999999993                                 37889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...
T Consensus        66 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           66 QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM  135 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988775554444333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.86  E-value=3.2e-20  Score=120.27  Aligned_cols=132  Identities=24%  Similarity=0.409  Sum_probs=120.6

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+.+..++.+|..++..|++++|+.+|.++++.+|.+                                 +.++..+|.+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~~a~~   56 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------------------------AIYYGNRSLA   56 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------------------------hHHHHHHHHH
Confidence            4678899999999999999999999999999999982                                 3788999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHHHHHhhc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK--LKEMGNSILG  160 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~  160 (186)
                      +...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++++|.++.++..++.+  +..     .|
T Consensus        57 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-----~~  131 (166)
T 1a17_A           57 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-----QK  131 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-----HH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----HH
Confidence            99999999999999999999999999999999999999999999999999999999999988666644  444     78


Q ss_pred             cccccchhhhhc
Q 044796          161 RFGMSTDNFKAV  172 (186)
Q Consensus       161 ~~~~A~~~~~~~  172 (186)
                      ++++|+..++..
T Consensus       132 ~~~~A~~~~~~~  143 (166)
T 1a17_A          132 AFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHcccch
Confidence            888998888765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=5.5e-21  Score=138.64  Aligned_cols=164  Identities=15%  Similarity=0.137  Sum_probs=128.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH------------------------
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK------------------------   59 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~------------------------   59 (186)
                      .+..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++ ..++.+.+.                        
T Consensus        97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  176 (368)
T 1fch_A           97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA  176 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence            3556667777777777777777777777777777777666666554 222222211                        


Q ss_pred             -------------------------HhhCCCcchhHH--HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHH
Q 044796           60 -------------------------KEVAPAPEMAEL--RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR  112 (186)
Q Consensus        60 -------------------------~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  112 (186)
                                               ..+.......|.  .+.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  256 (368)
T 1fch_A          177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK  256 (368)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence                                     111111111222  45889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          113 RAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       113 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +|.++...|++++|+..|+++++++|+++.++..+|.++..     .|++++|+..|++++
T Consensus       257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al  312 (368)
T 1fch_A          257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-----LGAHREAVEHFLEAL  312 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999     999999999999885

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.86  E-value=4.4e-21  Score=126.78  Aligned_cols=139  Identities=14%  Similarity=0.175  Sum_probs=120.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +.+..+..+|.++...|++++|+..+.+++...|.++.++..+|... ..++...+...+.......|..+.++..+|.+
T Consensus        37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~  116 (184)
T 3vtx_A           37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV  116 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            35678999999999999999999999999999999999999998876 44454454444443333444456899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      +..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          117 YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999999999999999999999999999999999999999998643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.85  E-value=3.9e-20  Score=117.57  Aligned_cols=117  Identities=13%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|..++..|++++|+..|++++..+|.+                                 +.+|..+|.++
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------~~~~~~lg~~~   62 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------------------------ARYFLGLGACR   62 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------HHHHHHHHHHH
Confidence            457789999999999999999999999999999993                                 38889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ...|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...
T Consensus        63 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998877666655544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.85  E-value=3.4e-20  Score=133.84  Aligned_cols=135  Identities=35%  Similarity=0.515  Sum_probs=117.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|..++..|++++|+.+|++++.++|.+.....           ..       .....+....++.++|.++
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-----------~~-------~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-----------EE-------AQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-----------HH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-----------HH-------HHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999542100           00       0112233458999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      ..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus       207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=2.3e-20  Score=134.48  Aligned_cols=169  Identities=21%  Similarity=0.181  Sum_probs=150.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .++.++.+|..++..|++++|+.+|+++++.+|+++.++..+|.+. ..++...+...+.......|..+.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999887 556666666555444444445569999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCc---ccHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNP---TYMKALIRR------------AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ...|++++|+..++++++.+|   +++.++..+            |.++...|++++|+..++++++.+|.++.++..++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   999888877            79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      .++..     .|++++|+..+++++...+.
T Consensus       162 ~~~~~-----~~~~~~A~~~~~~~~~~~~~  186 (359)
T 3ieg_A          162 ECFIK-----EGEPRKAISDLKAASKLKSD  186 (359)
T ss_dssp             HHHHH-----TTCHHHHHHHHHHHHTTCSC
T ss_pred             HHHHH-----CCCHHHHHHHHHHHHHhCCC
Confidence            99999     99999999999988654444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=9.6e-21  Score=135.20  Aligned_cols=162  Identities=12%  Similarity=-0.027  Sum_probs=87.8

Q ss_pred             HHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            7 NEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         7 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ..+..+|.++...| ++++|+.+|++++..+|.++.++..+|.+. ..++.+.+...+.......|.....+..+|.++.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            44555555555555 555555556555555555555555555544 3333333333322222222222345555566666


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------CCChHHHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD---------PSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~  155 (186)
                      ..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..         |..+.++..+|.++..  
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--  248 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK--  248 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH--
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH--
Confidence            66666666666666666666666666666666666666666666666665554         4445555555555555  


Q ss_pred             HHhhccccccchhhhhcc
Q 044796          156 NSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~  173 (186)
                         .|++++|+..|++++
T Consensus       249 ---~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          249 ---LKKYAEALDYHRQAL  263 (330)
T ss_dssp             ---TTCHHHHHHHHHHHH
T ss_pred             ---hcCHHHHHHHHHHHH
Confidence               566666666665554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.84  E-value=1.6e-20  Score=128.26  Aligned_cols=165  Identities=11%  Similarity=0.081  Sum_probs=135.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh---hhhhccchhh-hhcCchhHHHhh----CCCcchhHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE---RAESASAPEA-KEGQSASEKKEV----APAPEMAELRSICH   76 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~   76 (186)
                      .++.++.+|..++..|++++|+..|+++++..|.++   .+++.+|.++ ..++.+.+...+    ...|... ..+.++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-cHHHHH
Confidence            367899999999999999999999999999999875   5788888776 555555555443    3334322 123578


Q ss_pred             HHHHHHHhh------------------hccHHHHHHHHHHHHhcCcccHHHH-----------------HHHHHHHHHhc
Q 044796           77 SNRGICFLK------------------LGKFEESIKECTKALELNPTYMKAL-----------------IRRAEAHEKLE  121 (186)
Q Consensus        77 ~~~a~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g  121 (186)
                      +.+|.++..                  .|++++|+..|+++++.+|+++.++                 +.+|.++...|
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888888875                  5799999999999999999987554                 57899999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          122 HFEEAIADMKKILEFDPSNN---QAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       122 ~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ++++|+..|+++++..|+++   .++..++.++..     +|++++|+..++++...
T Consensus       162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~-----~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ-----MQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHhh
Confidence            99999999999999999986   679999999998     99999999999987533

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.84  E-value=2.3e-19  Score=120.06  Aligned_cols=138  Identities=21%  Similarity=0.336  Sum_probs=118.0

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+.+..+..+|..++..|+|++|+.+|.+++.+.|.++.....  ..               ..........++..+|.+
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~la~~   97 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--IL---------------LDKKKNIEISCNLNLATC   97 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HH---------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hH---------------HHHHHHHHHHHHHHHHHH
Confidence            4578889999999999999999999999999999985532211  00               000111234789999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      +..+|++++|+.++++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++..++..
T Consensus        98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A           98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.84  E-value=4.6e-20  Score=124.92  Aligned_cols=167  Identities=14%  Similarity=0.049  Sum_probs=142.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hh-cCchhHHHhhCCCcc--hhHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KE-GQSASEKKEVAPAPE--MAELRSICHSNRG   80 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~a   80 (186)
                      .+..+..+|.++...|++++|+.+|++++..+|.+..++..++.+. .. ++.+.+...+.....  ..+....++..+|
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  120 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG  120 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH
Confidence            3567889999999999999999999999999999999999998877 44 555554443322211  2334468999999


Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhh
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP-SNNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~  159 (186)
                      .++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..| .++.++..++.++..     .
T Consensus       121 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  195 (225)
T 2vq2_A          121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA-----L  195 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----T
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-----c
Confidence            9999999999999999999999999999999999999999999999999999999999 999999888877777     8


Q ss_pred             ccccccchhhhhcc--cCC
Q 044796          160 GRFGMSTDNFKAVK--DPN  176 (186)
Q Consensus       160 ~~~~~A~~~~~~~~--~~~  176 (186)
                      |+++.|..+++.+.  +|+
T Consensus       196 ~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          196 GNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHhCCC
Confidence            88888988888774  554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.84  E-value=5.3e-19  Score=109.79  Aligned_cols=118  Identities=30%  Similarity=0.454  Sum_probs=111.9

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ...+..++.+|..++..|++++|+.+|++++..+|.+                                 +.++..+|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~a~~   55 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------------------------AVYFCNRAAA   55 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------------------------HHHHHHHHHH
Confidence            3567889999999999999999999999999999982                                 3788999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++..
T Consensus        56 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.84  E-value=9.7e-20  Score=113.61  Aligned_cols=131  Identities=26%  Similarity=0.382  Sum_probs=121.9

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      +.++.+|..+...|++++|+..|+++++..|.+                                 +..+..+|.++...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~a~~~~~~   48 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------------------------AEAWYNLGNAYYKQ   48 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------------------------hhHHHHHHHHHHHh
Confidence            568899999999999999999999999998882                                 27788899999999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      |++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++..     .|++++|+
T Consensus        49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~  123 (136)
T 2fo7_A           49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----QGDYDEAI  123 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----TTCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----HccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988888     99999999


Q ss_pred             hhhhhcccC
Q 044796          167 DNFKAVKDP  175 (186)
Q Consensus       167 ~~~~~~~~~  175 (186)
                      ..|+.++..
T Consensus       124 ~~~~~~~~~  132 (136)
T 2fo7_A          124 EYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            999988643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.84  E-value=1.8e-19  Score=112.43  Aligned_cols=118  Identities=29%  Similarity=0.501  Sum_probs=111.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|..++..|++++|+.+|+++++.+|.+                                 ..++..+|.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~la~~~   60 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------------------------AKLYSNRAACY   60 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------------------------HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------------------------HHHHHHHHHHH
Confidence            467889999999999999999999999999999982                                 37899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      ...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..++.++...
T Consensus        61 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999988773

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.84  E-value=2e-21  Score=151.92  Aligned_cols=157  Identities=13%  Similarity=0.032  Sum_probs=135.1

Q ss_pred             HHcccHHHHHHHHHHHH--------hccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796           17 FAEGKYEEALLQYEVAL--------RVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus        17 ~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      ...|++++|+..|++++        +.+|++..++..+|..+ ..++.+.+...+.......|.++.+|+.+|.++..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            67889999999999999        88899999988888776 5566666666655555555556689999999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccch
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTD  167 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~  167 (186)
                      ++++|+..|+++++++|+++.+++.+|.++..+|++++ +..|+++++++|++..++.++|.++..     +|++++|+.
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-----~g~~~~A~~  555 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-----EGDRVGAVR  555 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-----cCCHHHHHH
Confidence            99999999999999999999999999999999999999 999999999999999999999999988     999999999


Q ss_pred             hhhhcccCCCCc
Q 044796          168 NFKAVKDPNTGA  179 (186)
Q Consensus       168 ~~~~~~~~~~~~  179 (186)
                      .|++++..++..
T Consensus       556 ~~~~al~l~P~~  567 (681)
T 2pzi_A          556 TLDEVPPTSRHF  567 (681)
T ss_dssp             HHHTSCTTSTTH
T ss_pred             HHHhhcccCccc
Confidence            999987555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=3.6e-20  Score=132.05  Aligned_cols=97  Identities=10%  Similarity=0.230  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY  250 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .|++++|+..|++++
T Consensus       251 ~~-----~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          251 SN-----MSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HH-----TTCHHHHHHHHHHHH
T ss_pred             HH-----hccHHHHHHHHHHHH
Confidence            88     999999999999885

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.83  E-value=5.5e-21  Score=122.43  Aligned_cols=97  Identities=8%  Similarity=0.026  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      +...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+++.+|.++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            44889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .|++++|+..|++++
T Consensus       100 ~~-----~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          100 LQ-----XGELAEAESGLFLAQ  116 (148)
T ss_dssp             HH-----TTCHHHHHHHHHHHH
T ss_pred             HH-----cCCHHHHHHHHHHHH
Confidence            99     999999999999885

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=6.6e-20  Score=132.94  Aligned_cols=166  Identities=11%  Similarity=0.072  Sum_probs=137.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..++.+|..++..|++++|+.+|+++++.+|.++.++..+|.+. ..++.+.+...+.......|..+.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            455889999999999999999999999999999999999999887 5566555555444333333445588888888888


Q ss_pred             hhccHHHHHHHHHHHHhcC-------------------------------------------------cc--cHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELN-------------------------------------------------PT--YMKALIRR  113 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~-------------------------------------------------p~--~~~~~~~l  113 (186)
                      ..|++++|+..+++++..+                                                 |+  ++.++..+
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            8888777777777666554                                                 44  67888999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCC
Q 044796          114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       114 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      |.++...|++++|+..|++++.++|+++.++..+|.++..     .|++++|+..|++++...
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999988     999999999999886433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.83  E-value=8.2e-20  Score=135.81  Aligned_cols=165  Identities=22%  Similarity=0.195  Sum_probs=120.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+..++.+|..++..|++++|+.+|+++++.+|.++.++..+|.+. ..++...+...+.......|..+.++..+|.+
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888877766 44555555544443333334445777788888


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccH---HHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYM---KALIRR------------AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      +...|++++|+..|++++..+|+++   .++..+            |.++...|++++|+..|+++++.+|.++.++..+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  183 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR  183 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            8888888888888888888887776   655444            5557777888888888888888888777777777


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +.++..     .|++++|+..|++++
T Consensus       184 ~~~~~~-----~g~~~~A~~~~~~~~  204 (450)
T 2y4t_A          184 AECFIK-----EGEPRKAISDLKAAS  204 (450)
T ss_dssp             HHHHHH-----TTCGGGGHHHHHHHH
T ss_pred             HHHHHH-----CCCHHHHHHHHHHHH
Confidence            777777     777777777777664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=7.1e-19  Score=107.36  Aligned_cols=115  Identities=29%  Similarity=0.429  Sum_probs=108.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|..++..|++++|+.+|++++..+|.+                                 +.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~a~~~   48 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------------------------HVLYSNRSAAY   48 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------------------------HHHHHHHHHHH
Confidence            467899999999999999999999999999999982                                 37889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ...|++++|+..+++++..+|+++.++..+|.++...|++++|...++++++.+|+++.++..++.+.
T Consensus        49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           49 AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999998888654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.83  E-value=1.7e-19  Score=121.70  Aligned_cols=134  Identities=18%  Similarity=0.142  Sum_probs=117.4

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +..+..++.+|..++..|++++|+.+|++++  +|.                                  +.++..+|.+
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~----------------------------------~~~~~~lg~~   46 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DPH----------------------------------SRICFNIGCM   46 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC----------------------------------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC----------------------------------hHHHHHHHHH
Confidence            3567788999999999999999999999985  332                                  2688899999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----------------HHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN----------------QAKRT  146 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~  146 (186)
                      +...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..|++++++.|.+.                .++..
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (213)
T 1hh8_A           47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN  126 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888776                88999


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          147 ILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       147 l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      +|.++..     .|++++|+..|++++...+
T Consensus       127 l~~~~~~-----~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A          127 IAFMYAK-----KEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHH-----TTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHH-----ccCHHHHHHHHHHHHHcCc
Confidence            9988888     8999999999988864443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.83  E-value=6.1e-20  Score=125.28  Aligned_cols=146  Identities=15%  Similarity=0.104  Sum_probs=125.5

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhh----CCCcchh---HHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEV----APAPEMA---ELRSICHS   77 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~---~~~~~~~~   77 (186)
                      ...++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++ ..++.+.+...+    ...|...   .....++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999887 556655555443    3333322   11236799


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCH---------------------------HHHHH
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHF---------------------------EEAIA  128 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~---------------------------~~A~~  128 (186)
                      .+|.++...|++++|+..|+++++++|+  ++.+++.+|.++...|+.                           ++|+.
T Consensus       122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~  201 (228)
T 4i17_A          122 KEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVD  201 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999  999999999999999999                           99999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHH
Q 044796          129 DMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus       129 ~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      +|+++++++|+++.+...++.+.
T Consensus       202 ~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          202 YLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHH
Confidence            99999999999999988887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.83  E-value=1.5e-19  Score=111.84  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=70.9

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .++.+|..++..|++++|+..|+++++.+|+                                 ++.+|+.+|.++...|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------------------------------~~~a~~~lg~~~~~~g   65 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---------------------------------REEAWRSLGLTQAENE   65 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------------------------CHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------------------------CHHHHHHHHHHHHHcC
Confidence            4566777777777777777777777777777                                 2266777777777777


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus        66 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            777777777777777777777777777777777777777777777777777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.82  E-value=5.2e-20  Score=138.53  Aligned_cols=130  Identities=25%  Similarity=0.422  Sum_probs=117.6

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+.+..+..+|..++..|++++|+.+|+++++++|++                                 +.++..+|.+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------------------------~~~~~~lg~~   49 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------------------------AIYYGNRSLA   49 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------------------------HHHHHHHHHH
Confidence            4667888899999999999999999999999999992                                 3889999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHHHHHhhc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK--LKEMGNSILG  160 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~  160 (186)
                      +..+|++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+  +..     .+
T Consensus        50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~g  124 (477)
T 1wao_1           50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-----QK  124 (477)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH-----HH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999977  666     79


Q ss_pred             cccccchhhh
Q 044796          161 RFGMSTDNFK  170 (186)
Q Consensus       161 ~~~~A~~~~~  170 (186)
                      ++++|++.++
T Consensus       125 ~~~~A~~~~~  134 (477)
T 1wao_1          125 AFERAIAGDE  134 (477)
T ss_dssp             HHCCC-----
T ss_pred             HHHHHhcccc
Confidence            9999999998

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=6e-20  Score=139.26  Aligned_cols=163  Identities=17%  Similarity=0.122  Sum_probs=145.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+.+|+++++.+|+ +.++..+|.+. ..++...+...+.......|..+.++..+|.++
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999 88888888877 556666666555444444445568999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..     .|+++
T Consensus       321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~  395 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-----RGDFD  395 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-----TTCHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----hCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998     99999


Q ss_pred             ccchhhhhcc
Q 044796          164 MSTDNFKAVK  173 (186)
Q Consensus       164 ~A~~~~~~~~  173 (186)
                      +|+..|++++
T Consensus       396 ~A~~~~~~a~  405 (537)
T 3fp2_A          396 TAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999885

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.82  E-value=3e-19  Score=133.78  Aligned_cols=136  Identities=29%  Similarity=0.436  Sum_probs=114.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|..++..|+|++|+.+|+++++++|.+.....            ..      .....+....+|.++|.++
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------~~------~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------KE------SKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------HH------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh------------HH------HHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999998543100            00      0012233458999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      ..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++.
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=3e-19  Score=124.50  Aligned_cols=170  Identities=15%  Similarity=0.050  Sum_probs=133.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..+..++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++ ..++.+.+...+.......|..+.++..+|.+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  120 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence            46788999999999999999999999999999999999999988877 55555555554443333333445889999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN----------------------  140 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------  140 (186)
                      +...|++++|+..++++++.+|+++......+.+ ...|++++|+..+.+++...|.+                      
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  199 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER  199 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999999999999999988766666654 56688888888888887776654                      


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796          141 ---------------NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       141 ---------------~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                                     +.++..+|.++..     .|++++|+..|++++..+|..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          200 LKADATDNTSLAEHLSETNFYLGKYYLS-----LGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCchh
Confidence                           3445555655555     899999999999887555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.82  E-value=1.2e-19  Score=135.02  Aligned_cols=167  Identities=14%  Similarity=0.203  Sum_probs=117.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHH------
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSN------   78 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   78 (186)
                      +..+..+|.++...|++++|+.+|+++++.+|.++.++..+|.++ ..++.+.+...+.......|.....+..      
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            445666777777777777777777777777777777777776665 3344444443332222222222233333      


Q ss_pred             ------HHHHHhhhccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           79 ------RGICFLKLGKFEESIKECTKALELNPTYMK----ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        79 ------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                            +|.++...|++++|+..|++++..+|+++.    ++..+|.++...|++++|+..++++++++|+++.++..++
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~  336 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA  336 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence                  378888888888888888888888887743    6778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .++..     .|++++|+..|++++..+|
T Consensus       337 ~~~~~-----~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          337 EAYLI-----EEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHHH-----TTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHH-----hcCHHHHHHHHHHHHHhCc
Confidence            88887     8888888888888854433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.82  E-value=8.9e-20  Score=127.19  Aligned_cols=162  Identities=14%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ..+..+|.++...|++++|+.+|+++++.+|.++.++..+|.+. ..++.+.+...+.......|..+.++..+|.....
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            34555555666666666666666666666666555555555554 33444444443333322233334555555522223


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcC---CCC-----hHHHHHHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH---FEEAIADMKKILEFD---PSN-----NQAKRTILRKLKEM  154 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~  154 (186)
                      .+++++|+..++++++.+|+++.+++.+|.++..+|+   +++|+..|++++++.   |+.     ..++..+|.++.. 
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  233 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI-  233 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-
Confidence            3355666666666666666555555556666555555   555555565555554   221     1344444444444 


Q ss_pred             HHHhhccccccchhhhhcc
Q 044796          155 GNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~  173 (186)
                          .|++++|+.+|++++
T Consensus       234 ----~~~~~~A~~~~~~al  248 (272)
T 3u4t_A          234 ----NRDKVKADAAWKNIL  248 (272)
T ss_dssp             ----TTCHHHHHHHHHHHH
T ss_pred             ----cCCHHHHHHHHHHHH
Confidence                666666666666664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.81  E-value=2.3e-19  Score=137.76  Aligned_cols=164  Identities=13%  Similarity=0.113  Sum_probs=114.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ...+..+|..+...|++++|+..|+++++..|++..++..++..+ ..++.+.+...+.......+.++.+|..+|.++.
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666554 3444444444333322222334477778888888


Q ss_pred             hhccHHHHHHHHHHHHhc------Cccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALEL------NPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      ..|++++|+..|+++++.      +|+. ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++..    
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----  562 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH----  562 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH----
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----
Confidence            888888888888888877      5554 67788888888888888888888888888888888888888887777    


Q ss_pred             hhccccccchhhhhccc
Q 044796          158 ILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~~~  174 (186)
                       .|++++|++.|++++.
T Consensus       563 -~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          563 -KKIPGLAITHLHESLA  578 (597)
T ss_dssp             -TTCHHHHHHHHHHHHH
T ss_pred             -hCCHHHHHHHHHHHHh
Confidence             8888888888887753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.81  E-value=1.4e-18  Score=109.21  Aligned_cols=117  Identities=27%  Similarity=0.478  Sum_probs=108.0

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|..++..|++++|+.+|.+++..+|.                                 ++.++..+|.++
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------------------------~~~~~~~l~~~~   53 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------------------------VAVYYTNRALCY   53 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------------------CHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---------------------------------cHHHHHHHHHHH
Confidence            35788999999999999999999999999999999                                 238899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-----NNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~  153 (186)
                      ...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+     +..+...+..+...
T Consensus        54 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           54 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998     77777777766554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=5.3e-21  Score=149.57  Aligned_cols=167  Identities=13%  Similarity=-0.022  Sum_probs=139.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .++.++.+|.++...|++++|+..|+++++.+|++..++..+|.++ ..++.+.+...+.......|.++.++.++|.++
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~  511 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA  511 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999887 556666666555444444444559999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH---Hhhc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN---SILG  160 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~  160 (186)
                      ..+|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++.+++.++...+.   ...+
T Consensus       512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~  590 (681)
T 2pzi_A          512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEE  590 (681)
T ss_dssp             HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHH
T ss_pred             HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHH
Confidence            99999999 9999999999999999999999999999999999999999999999999999999988765332   1124


Q ss_pred             cccccchhhhhc
Q 044796          161 RFGMSTDNFKAV  172 (186)
Q Consensus       161 ~~~~A~~~~~~~  172 (186)
                      ++++|.+.+...
T Consensus       591 ~~~~A~~~l~~~  602 (681)
T 2pzi_A          591 QIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhC
Confidence            455555555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=2e-19  Score=127.39  Aligned_cols=158  Identities=11%  Similarity=0.070  Sum_probs=97.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHH--HH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRG--IC   82 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~   82 (186)
                      +..++.+|.++...|++++|+.+|++     |.++.++..++.++ ..+..+.+...+.......|.........+  .+
T Consensus       101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l  175 (291)
T 3mkr_A          101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL  175 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence            44555566666666666666666655     55555555555554 334444333332222111111111111111  22


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|...|+++++++|+++.++.+++.++..     .|++
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-----~g~~  250 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-----LGKP  250 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCC
T ss_pred             HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCC
Confidence            23346777777777777777777778888888888888888888888888888888888888888877777     7777


Q ss_pred             cc-cchhhhhcc
Q 044796          163 GM-STDNFKAVK  173 (186)
Q Consensus       163 ~~-A~~~~~~~~  173 (186)
                      .+ +.+++++++
T Consensus       251 ~eaa~~~~~~~~  262 (291)
T 3mkr_A          251 PEVTNRYLSQLK  262 (291)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            65 456777664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.81  E-value=1.6e-20  Score=147.10  Aligned_cols=139  Identities=14%  Similarity=0.218  Sum_probs=121.5

Q ss_pred             ccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHH
Q 044796           35 VASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRR  113 (186)
Q Consensus        35 ~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  113 (186)
                      ..|++++++..+|.++ ..++.+++...+.......|..+.++.++|.++..+|++++|+..|+++++++|+++.+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4688899999999887 556666666555444444445569999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       114 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      |.++..+|++++|+..|+++++++|++..++.++|.++..     +|++++|+..|++++..+|+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-----~g~~~eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-----SGNIPEAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999     99999999999999644443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.81  E-value=7e-19  Score=135.00  Aligned_cols=134  Identities=11%  Similarity=0.052  Sum_probs=114.0

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..+..+|.++...|++++|+.+|+++++++|+                                 ++.++..+|.++..
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------------------------~~~~~~~lg~~~~~   69 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---------------------------------HPEAVARLGRVRWT   69 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---------------------------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHHHH
Confidence            455666666666666666666666666666666                                 34889999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh---ccc
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL---GRF  162 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---~~~  162 (186)
                      +|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++..     .   |++
T Consensus        70 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~~~~g~~  144 (568)
T 2vsy_A           70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-----LCDWRAL  144 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCTTH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hhccccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988     7   899


Q ss_pred             cccchhhhhcccCCC
Q 044796          163 GMSTDNFKAVKDPNT  177 (186)
Q Consensus       163 ~~A~~~~~~~~~~~~  177 (186)
                      ++|+..|++++..++
T Consensus       145 ~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          145 DVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999998864433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.81  E-value=1.2e-19  Score=113.27  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      ..+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++..+..++.+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999887766666666


Q ss_pred             HHHHHHH--hhccccccchhhhhccc
Q 044796          151 LKEMGNS--ILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       151 ~~~~~~~--~~~~~~~A~~~~~~~~~  174 (186)
                      +..+|..  .++++++|+++|++++.
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666654  38999999999999863

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.81  E-value=1.2e-19  Score=131.03  Aligned_cols=154  Identities=25%  Similarity=0.424  Sum_probs=98.0

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+.+..++.+|..++..|+|++|+.+|++++.+.|.+... ...+      ........         ....++.++|.+
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-~~~~------~~~~~~~~---------l~~~~~~nla~~  239 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-QLYG------KYQDMALA---------VKNPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-TCCH------HHHHHHHH---------HHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-hhcc------cHHHHHHH---------HHHHHHHHHHHH
Confidence            4678899999999999999999999999999999985421 0000      00111111         112589999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.+...    ..+..
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~----~~~~~  315 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ----EKALY  315 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998876332    25667


Q ss_pred             cccchhhhhcccCC
Q 044796          163 GMSTDNFKAVKDPN  176 (186)
Q Consensus       163 ~~A~~~~~~~~~~~  176 (186)
                      +.+...|++++...
T Consensus       316 ~~a~~~~~~~l~~~  329 (338)
T 2if4_A          316 QKQKEMYKGIFKGK  329 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHhhCCC
Confidence            78888888875443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=1.3e-19  Score=129.22  Aligned_cols=160  Identities=16%  Similarity=0.124  Sum_probs=109.0

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHh----hCCCcchhHHHHHHHHHH--
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKE----VAPAPEMAELRSICHSNR--   79 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--   79 (186)
                      ..+..+|.++...|++++|+.+|+++++.+|.++.++..+|.+. ..++.+.+...    +...|...    ..+..+  
T Consensus        56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~  131 (327)
T 3cv0_A           56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE----QLGSVNLQ  131 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT----TC------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHhH
Confidence            44555555555555555555555555555555555555555444 22333222222    22222111    222222  


Q ss_pred             ------------HH-HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796           80 ------------GI-CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT  146 (186)
Q Consensus        80 ------------a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  146 (186)
                                  +. ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  211 (327)
T 3cv0_A          132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK  211 (327)
T ss_dssp             --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence                        33 46667777777777888888888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          147 ILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       147 l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ++.++..     .|++++|+..|++++..
T Consensus       212 l~~~~~~-----~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          212 LGATLAN-----GNRPQEALDAYNRALDI  235 (327)
T ss_dssp             HHHHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----cCCHHHHHHHHHHHHHc
Confidence            9999988     99999999999988643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.80  E-value=2.2e-18  Score=125.79  Aligned_cols=137  Identities=27%  Similarity=0.503  Sum_probs=116.6

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ++.+..+..+|..++..|++++|+.+|++++++.|..+..          ..   ...    .....+....++.++|.+
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~----------~~---~~~----~~~~~~~~~~~~~nla~~  282 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA----------AE---DAD----GAKLQPVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----------SC---HHH----HGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccc----------cC---hHH----HHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999976553200          00   000    111334466899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      +..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..++.
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.80  E-value=7.8e-18  Score=103.61  Aligned_cols=116  Identities=31%  Similarity=0.441  Sum_probs=109.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..++.+|.++...|++++|+..|++++...|.+                                 +.++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~la~~~~   54 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------AEAWYNLGNAYY   54 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------------------------HHHHHHHHHHHH
Confidence            36789999999999999999999999999999882                                 378889999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus        55 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999988766

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.80  E-value=2e-19  Score=126.79  Aligned_cols=142  Identities=23%  Similarity=0.375  Sum_probs=119.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..++.+|..++..|++++|+.+|++++..+|+                                 ++.++.++|.++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------------------~~~~~~~la~~~~   49 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------------------------VAVYYTNRALCYL   49 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------------------------CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------------------------cHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998                                 3388999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-----HHHHHHHH----------
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN-----QAKRTILR----------  149 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~----------  149 (186)
                      .+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+++     .++..+..          
T Consensus        50 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
T 2c2l_A           50 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  129 (281)
T ss_dssp             HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998763     22222211          


Q ss_pred             ---------HHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796          150 ---------KLKEMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       150 ---------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                               +...++....|++++|++.++.++..+++.
T Consensus       130 ~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A          130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             HTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence                     111223335678889999998887665554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=8.4e-18  Score=106.76  Aligned_cols=118  Identities=31%  Similarity=0.547  Sum_probs=108.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|..++..|++++|+.+|+++++.+|++.                              ....++..+|.++
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------~~~~~~~~~a~~~   75 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ------------------------------DQAVLHRNRAACH   75 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch------------------------------HHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999821                              1248899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      ...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus        76 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           76 LKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988877643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.80  E-value=1.8e-18  Score=122.51  Aligned_cols=169  Identities=9%  Similarity=-0.073  Sum_probs=128.0

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC------hhhhhccchhh-hhcCchhHHHhhC----CCcch--hH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP------ERAESASAPEA-KEGQSASEKKEVA----PAPEM--AE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~--~~   70 (186)
                      +....+...|.++...|++++|+.+|.+++.+.+..      ..++..+|.++ ..++.+.+...+.    ..+..  ..
T Consensus        35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~  114 (292)
T 1qqe_A           35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            345667777888888888888888888888875432      34566677666 3345544443322    22211  11


Q ss_pred             HHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-
Q 044796           71 LRSICHSNRGICFLKL-GKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ-  142 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-  142 (186)
                      ..+.++..+|.++... |++++|+.+|++++++.|..      ..++..+|.++..+|++++|+.+|++++++.|+++. 
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            2357889999999996 99999999999999998754      567899999999999999999999999999998764 


Q ss_pred             ------HHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          143 ------AKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       143 ------~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                            ++..+|.++..     +|++++|+.+|++++..+|
T Consensus       195 ~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLA-----ATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             GGGHHHHHHHHHHHHHH-----TTCHHHHHHHHHGGGCC--
T ss_pred             cHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCC
Confidence                  46777777777     8999999999999965444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.80  E-value=9.4e-19  Score=134.40  Aligned_cols=164  Identities=12%  Similarity=0.125  Sum_probs=117.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|..+...|++++|+..|+++++.+|.+..++..++.+. ..++...+...+.......+.....+..+|.++
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  383 (597)
T 2xpi_A          304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY  383 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            4567888899999999999999999999998888888777776665 444444444443332233333446777777777


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++..|++..++..++.++..     .|+++
T Consensus       384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~  458 (597)
T 2xpi_A          384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-----LGNIL  458 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-----HTCHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----cCCHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777766666     66667


Q ss_pred             ccchhhhhcc
Q 044796          164 MSTDNFKAVK  173 (186)
Q Consensus       164 ~A~~~~~~~~  173 (186)
                      +|++.|++++
T Consensus       459 ~A~~~~~~~~  468 (597)
T 2xpi_A          459 LANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776664

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.4e-19  Score=136.39  Aligned_cols=168  Identities=17%  Similarity=0.129  Sum_probs=141.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+.+|+++++.+|.++.++..+|.+. ..++.+.+...+.......|..+.++..+|.++
T Consensus       303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  382 (514)
T 2gw1_A          303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL  382 (514)
T ss_dssp             CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            3467888999999999999999999999999999998888888776 445555555444333333334458899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMK------ALIRRAEAHEK---LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      ...|++++|+..+++++..+|+++.      ++..+|.++..   .|++++|+..|++++..+|+++.++..++.++.. 
T Consensus       383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-  461 (514)
T 2gw1_A          383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ-  461 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            9999999999999999999988855      99999999999   9999999999999999999999999999999998 


Q ss_pred             HHHhhccccccchhhhhcccCCC
Q 044796          155 GNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                          .|++++|+..|++++..++
T Consensus       462 ----~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          462 ----QEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             ----TTCHHHHHHHHHHHHHHCS
T ss_pred             ----hcCHHHHHHHHHHHHHhcc
Confidence                9999999999998864433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.79  E-value=8.7e-18  Score=104.52  Aligned_cols=114  Identities=15%  Similarity=0.104  Sum_probs=102.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ++.++.+|..++..|++++|+..|+++++.+|+++                          .    .+.+++.+|.++..
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------------------~----~~~~~~~lg~~~~~   51 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV--------------------------Y----TPNALYWLGESYYA   51 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST--------------------------T----HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc--------------------------c----cHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999832                          1    22788999999999


Q ss_pred             hccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      .|++++|+..+++++..+|++   +.+++.+|.++..+|++++|+..|++++...|+++.+......
T Consensus        52 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           52 TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            999999999999999999999   8999999999999999999999999999999999887766554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.79  E-value=1.4e-17  Score=103.38  Aligned_cols=118  Identities=20%  Similarity=0.282  Sum_probs=108.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|..++..|++++|+.+|++++..+|.+                                 +.++..+|.++
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------------~~~~~~la~~~   48 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------------------------MTYITNQAAVY   48 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------------------------HHHHHHHHHHH
Confidence            467889999999999999999999999999999982                                 37889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      ...|++++|+..+++++...|.+       +.+++.+|.++...|++++|+..|+++++..| ++..+..++.+...++
T Consensus        49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           49 FEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999887       89999999999999999999999999999999 6888888888777633

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=3.3e-18  Score=121.10  Aligned_cols=163  Identities=10%  Similarity=0.045  Sum_probs=139.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc--cCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV--ASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      ....+..++..+...+++++|+..+++.+..  +|+++.++..+|.++ ..++.+.+...+.. +    .++.++..+|.
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~----~~~~~~~~l~~  138 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-G----DSLECMAMTVQ  138 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-C----CSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-C----CCHHHHHHHHH
Confidence            3456777888888999999999999999876  699999999999887 66888888888877 3    34589999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAE--AHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  159 (186)
                      ++..+|++++|+..++++++.+|++.......+.  ++...|++++|+..|+++++.+|+++.++..+|.++..     .
T Consensus       139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-----~  213 (291)
T 3mkr_A          139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-----Q  213 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-----T
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----c
Confidence            9999999999999999999999998755444443  33455899999999999999999999999999999999     9


Q ss_pred             ccccccchhhhhcccCCC
Q 044796          160 GRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~  177 (186)
                      |++++|+..|++++..+|
T Consensus       214 g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          214 GRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHhCC
Confidence            999999999999864333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.8e-19  Score=134.73  Aligned_cols=160  Identities=15%  Similarity=0.084  Sum_probs=142.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   78 (186)
                      ..+..+..+|.++...|++++|+.+|++++..+|. ..++..+|.+. ..++...+.    ..+...|..    +.++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~  309 (514)
T 2gw1_A          235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN----SSVYYH  309 (514)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----THHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----HHHHHH
Confidence            45778999999999999999999999999999999 88998888876 444444433    444544443    489999


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI  158 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  158 (186)
                      +|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..     
T Consensus       310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----  384 (514)
T 2gw1_A          310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD-----  384 (514)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-----
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             hccccccchhhhhcc
Q 044796          159 LGRFGMSTDNFKAVK  173 (186)
Q Consensus       159 ~~~~~~A~~~~~~~~  173 (186)
                      .|++++|+..|++++
T Consensus       385 ~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          385 KNDFDKALKQYDLAI  399 (514)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999999885

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.79  E-value=2.9e-19  Score=117.42  Aligned_cols=126  Identities=15%  Similarity=0.123  Sum_probs=104.8

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES   92 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   92 (186)
                      +..+...|++++|+..+++++..+|.+                                 +.++..+|.++...|++++|
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------~~~~~~lg~~~~~~~~~~~A   63 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQN---------------------------------SEQWALLGEYYLWQNDYSNS   63 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSC---------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCc---------------------------------HHHHHHHHHHHHHcCCHHHH
Confidence            344567899999999999999999993                                 37888889999999999999


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796           93 IKECTKALELNPTYMKALIRRAEA-HEKLEHF--EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF  169 (186)
Q Consensus        93 ~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~  169 (186)
                      +.+|++++..+|+++.++..+|.+ +...|++  ++|+..|++++..+|+++.++..+|.++..     .|++++|+..|
T Consensus        64 ~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~  138 (177)
T 2e2e_A           64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-----QANYAQAIELW  138 (177)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----cccHHHHHHHH
Confidence            999999999999999999999998 7788888  999999999999999999999999988888     88899999999


Q ss_pred             hhcccCC
Q 044796          170 KAVKDPN  176 (186)
Q Consensus       170 ~~~~~~~  176 (186)
                      ++++..+
T Consensus       139 ~~al~~~  145 (177)
T 2e2e_A          139 QKVMDLN  145 (177)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhC
Confidence            8885433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=1e-18  Score=110.99  Aligned_cols=98  Identities=12%  Similarity=0.080  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      .....++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.++..+|.+
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            35588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcc
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +..     .|++++|+..|++++
T Consensus        96 ~~~-----~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           96 HLQ-----LGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHH-----TTCHHHHHHHHHHHH
T ss_pred             HHH-----cCCHHHHHHHHHHHH
Confidence            999     999999999999885

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=1.2e-18  Score=121.49  Aligned_cols=166  Identities=19%  Similarity=0.131  Sum_probs=136.2

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc--------CCChhhhhccchhh-hhcCchhHHHhhCCCcch------
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA--------SVPERAESASAPEA-KEGQSASEKKEVAPAPEM------   68 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------   68 (186)
                      ..+..+..+|.++...|++++|+.+|++++++.        |....++..+|.+. ..++.+.+...+......      
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            457889999999999999999999999999884        55566777788776 445555554443322222      


Q ss_pred             --hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 044796           69 --AELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--  136 (186)
Q Consensus        69 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--  136 (186)
                        .+....++..+|.++...|++++|+.++++++.+        .|....++..+|.++...|++++|+..+++++++  
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence              3556789999999999999999999999999998        8888899999999999999999999999999986  


Q ss_pred             -----------------------------------------------CCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796          137 -----------------------------------------------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF  169 (186)
Q Consensus       137 -----------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~  169 (186)
                                                                     .|..+.++..++.++..     .|++++|+..|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~  275 (283)
T 3edt_B          201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR-----QGKLEAAHTLE  275 (283)
T ss_dssp             HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHH-----TTCHHHHHHHH
T ss_pred             HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHH
Confidence                                                           24455667778877777     99999999999


Q ss_pred             hhccc
Q 044796          170 KAVKD  174 (186)
Q Consensus       170 ~~~~~  174 (186)
                      ++++.
T Consensus       276 ~~al~  280 (283)
T 3edt_B          276 DCASR  280 (283)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.78  E-value=3.7e-19  Score=134.93  Aligned_cols=165  Identities=18%  Similarity=0.141  Sum_probs=124.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+..|+++++.+|.++.++..+|.+. ..++.+.+...+.......|..+.++..+|.++
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  388 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL  388 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3566777888888888888888888888888888888888777766 445555554444333333333447788888888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMK------ALIRRAEAHEKL----------EHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ...|++++|+..++++++.+|+++.      .++.+|.++...          |++++|+..|+++++.+|+++.++..+
T Consensus       389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  468 (537)
T 3fp2_A          389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL  468 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            8888888888888888887776543      355667778877          888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhccccccchhhhhccc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      +.++..     .|++++|+..|++++.
T Consensus       469 ~~~~~~-----~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          469 AQLKLQ-----MEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHH-----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----hccHHHHHHHHHHHHH
Confidence            888888     8888888888888753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.3e-18  Score=108.05  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhccc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      ..     .|++++|+..|++++.
T Consensus        83 ~~-----~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IA-----VKEYASALETLDAART  100 (126)
T ss_dssp             HH-----TTCHHHHHHHHHHHHH
T ss_pred             HH-----HhCHHHHHHHHHHHHH
Confidence            99     9999999999998853

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=5.5e-19  Score=112.75  Aligned_cols=96  Identities=24%  Similarity=0.306  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc-------cHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPT-------YMK-----ALIRRAEAHEKLEHFEEAIADMKKILEF----  136 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~----  136 (186)
                      +..+..+|..++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|++++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            478899999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCChHHH----HHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          137 ---DPSNNQAK----RTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       137 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                         +|++..+|    +++|.++..     +|++++|+.+|++++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~-----lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDG-----LGRGAEAMPEFKKVV  129 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHH-----CCCHHHHHHHHHHHH
Confidence               99999999    999999999     999999999999995

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.78  E-value=2.2e-18  Score=106.55  Aligned_cols=100  Identities=13%  Similarity=0.086  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccccchhhhhcccCCCC
Q 044796          154 MGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                           .|++++|+..|++++..+|.
T Consensus        98 -----~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           98 -----EHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             -----HHHHHHHHHHHHHHHC----
T ss_pred             -----cCCHHHHHHHHHHHHHhCcC
Confidence                 99999999999998755443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=129.08  Aligned_cols=168  Identities=8%  Similarity=-0.021  Sum_probs=118.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC--------------------chhHHHhhCC
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ--------------------SASEKKEVAP   64 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~   64 (186)
                      .+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++....                    ...+...+..
T Consensus       246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  325 (472)
T 4g1t_A          246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK  325 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45678899999999999999999999999999999999998887652210                    0111111111


Q ss_pred             CcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHH---HHHHHHHH-HHHhcCHHHHHHHHHHHHhcC---
Q 044796           65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK---ALIRRAEA-HEKLEHFEEAIADMKKILEFD---  137 (186)
Q Consensus        65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~-~~~~g~~~~A~~~~~~al~~~---  137 (186)
                      .....|..+.++..+|.++...|++++|+.+|++++.++|++..   ++..+|.+ ....|++++|+..|.++++++   
T Consensus       326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            11122223367889999999999999999999999999887643   45667754 568899999999999998764   


Q ss_pred             ---------------------CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          138 ---------------------PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       138 ---------------------p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                                           |.++.++..+|.++..     .|++++|+++|+++++.++
T Consensus       406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~-----~g~~~~A~~~y~kALe~~~  461 (472)
T 4g1t_A          406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL-----NEKMQQADEDSERGLESGS  461 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH-----HHHCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCC
Confidence                                 5667788888888888     9999999999999975543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.77  E-value=2.4e-18  Score=119.70  Aligned_cols=156  Identities=14%  Similarity=0.160  Sum_probs=121.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC---hhhhhccchhhh---------hcCchhHHHh----hCCCcchh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP---ERAESASAPEAK---------EGQSASEKKE----VAPAPEMA   69 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~   69 (186)
                      +..++.+|.+++..|++++|+..|+++++.+|++   +.+++.+|.+..         .++...+...    +...|...
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            7889999999999999999999999999998865   456777887763         3444444433    33333321


Q ss_pred             HHHHHH--------------HHHHHHHHhhhccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHh----------cC
Q 044796           70 ELRSIC--------------HSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKL----------EH  122 (186)
Q Consensus        70 ~~~~~~--------------~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~----------g~  122 (186)
                       ....+              ++.+|.++...|++++|+..|+++++.+|+   .+.+++.+|.++..+          |+
T Consensus       132 -~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~  210 (261)
T 3qky_A          132 -LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER  210 (261)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence             11122              288999999999999999999999999998   678999999999987          99


Q ss_pred             HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHhhccccccch
Q 044796          123 FEEAIADMKKILEFDPSNNQ---AKRTILRKLKEMGNSILGRFGMSTD  167 (186)
Q Consensus       123 ~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~~~~~A~~  167 (186)
                      +++|+..|+++++..|+++.   +...++.+...     .++++.+..
T Consensus       211 ~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~-----~~~~~~~~~  253 (261)
T 3qky_A          211 YRRAVELYERLLQIFPDSPLLRTAEELYTRARQR-----LTELEGDAS  253 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH-----HHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----HHHhhhhhH
Confidence            99999999999999999964   45556666666     455544443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.77  E-value=3.6e-19  Score=128.45  Aligned_cols=155  Identities=19%  Similarity=0.192  Sum_probs=128.0

Q ss_pred             HHHcccHHHHHHHHHH----HHhccCCChhhhhccchhh-------------hhcCchhHHHhhCCCcchhHHHHHHHHH
Q 044796           16 LFAEGKYEEALLQYEV----ALRVASVPERAESASAPEA-------------KEGQSASEKKEVAPAPEMAELRSICHSN   78 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~----al~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (186)
                      +...+.+++|+..+..    ++.+.|..  ++...|...             .......+...+.......+..+..+..
T Consensus        75 ~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~  152 (336)
T 1p5q_A           75 LDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKE  152 (336)
T ss_dssp             GTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHH
Confidence            3345689999999999    89999986  444444321             1122233334444555556677899999


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      +|.++...|++++|+..|++++.++|++               ..++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus       153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a  232 (336)
T 1p5q_A          153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKG  232 (336)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999999999999999999999998               6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          144 KRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      ++.+|.++..     +|++++|+..|++++..+|
T Consensus       233 ~~~lg~~~~~-----~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          233 LSRRGEAHLA-----VNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HHHHHHHHHH-----TTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHH-----CCCHHHHHHHHHHHHHHCC
Confidence            9999999999     9999999999999964433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.76  E-value=6.5e-18  Score=107.58  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=88.6

Q ss_pred             HHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH------
Q 044796           16 LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF------   89 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------   89 (186)
                      .-+.+.|++|+..++++++++|+++                                 .+|+++|.++...+++      
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~a---------------------------------ea~~n~G~~l~~l~~~~~g~~a   58 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDA---------------------------------DNLTRWGGVLLELSQFHSISDA   58 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCH---------------------------------HHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCH---------------------------------HHHHHHHHHHHHhcccchhhhh
Confidence            3466889999999999999999943                                 6777777777777664      


Q ss_pred             ----HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           90 ----EESIKECTKALELNPTYMKALIRRAEAHEKLE-----------HFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        90 ----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                          ++|+..|+++++++|+++.+|+++|.+|..+|           ++++|+.+|++|++++|++...+..+..
T Consensus        59 l~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           59 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                69999999999999999999999999999885           8999999999999999999877766553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=3.3e-18  Score=121.05  Aligned_cols=166  Identities=19%  Similarity=0.143  Sum_probs=136.5

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc--------CCChhhhhccchhh-hhcCchhHHHhhCCCcch------
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA--------SVPERAESASAPEA-KEGQSASEKKEVAPAPEM------   68 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------   68 (186)
                      ..+..+..+|.++...|++++|+.+|++++...        |....++..+|.++ ..++.+.+...+......      
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  146 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence            456788999999999999999999999999884        44556777777776 445555444433322221      


Q ss_pred             --hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 044796           69 --AELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--  136 (186)
Q Consensus        69 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--  136 (186)
                        .+....++..+|.++...|++++|+.++++++..        +|....++..+|.++...|++++|+..++++++.  
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence              2456688999999999999999999999999998        7888899999999999999999999999999974  


Q ss_pred             -----------------------------------------------CCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796          137 -----------------------------------------------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF  169 (186)
Q Consensus       137 -----------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~  169 (186)
                                                                     +|..+.++..+|.++..     .|++++|+.+|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~  301 (311)
T 3nf1_A          227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR-----QGKFEAAETLE  301 (311)
T ss_dssp             HHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH-----HTCHHHHHHHH
T ss_pred             HhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH-----CCCHHHHHHHH
Confidence                                                           46667788888888888     99999999999


Q ss_pred             hhccc
Q 044796          170 KAVKD  174 (186)
Q Consensus       170 ~~~~~  174 (186)
                      ++++.
T Consensus       302 ~~al~  306 (311)
T 3nf1_A          302 EAAMR  306 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98853

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.76  E-value=1.5e-17  Score=115.84  Aligned_cols=156  Identities=17%  Similarity=0.078  Sum_probs=102.5

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhcc----CCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVA----SVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ++......|++++|+..|+++++..    |.++.++..+|.+. ..++.+.+...+.......|..+.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            3444556799999999999999984    44455666666655 344444444333322222233446777777777777


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.....++.. ..     .|++++|+
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-----~~~~~~A~  164 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-----KLDEKQAK  164 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-----HHCHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-----hcCHHHHH
Confidence            7777777777777777777777777777777777777777777777777777776555444422 22     46777777


Q ss_pred             hhhhhcc
Q 044796          167 DNFKAVK  173 (186)
Q Consensus       167 ~~~~~~~  173 (186)
                      ..+++++
T Consensus       165 ~~~~~~~  171 (275)
T 1xnf_A          165 EVLKQHF  171 (275)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=3.9e-18  Score=121.58  Aligned_cols=161  Identities=13%  Similarity=-0.085  Sum_probs=115.6

Q ss_pred             HHHHHHHhHhHHHH-------cccH-------HHHHHHHHHHHh-ccCCChhhhhccchhh-hhcCchhHH----HhhCC
Q 044796            5 EANEAKLEGNKLFA-------EGKY-------EEALLQYEVALR-VASVPERAESASAPEA-KEGQSASEK----KEVAP   64 (186)
Q Consensus         5 ~a~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~   64 (186)
                      .++.|+..|..+..       .|++       ++|+..|+++++ ++|++..+|..++... ..++.+.+.    +++..
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  128 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  128 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            45667777776653       4664       888888888888 6888888888877765 334433333    34444


Q ss_pred             CcchhHHHHH-HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCChH
Q 044796           65 APEMAELRSI-CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE-KLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        65 ~~~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      .|..    +. +|..+|.++...|++++|+..|+++++.+|....++...+.+.. ..|++++|...|+++++.+|+++.
T Consensus       129 ~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~  204 (308)
T 2ond_A          129 EDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE  204 (308)
T ss_dssp             SSSC----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccC----ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            4432    24 78888888888888888888888888888877777766655543 368888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796          143 AKRTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      +|..++..+..     .|++++|+..|++++.
T Consensus       205 ~~~~~~~~~~~-----~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          205 YVLAYIDYLSH-----LNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHHT-----TCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----CCCHHHHHHHHHHHHh
Confidence            88888877777     7778888888877754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.76  E-value=5e-18  Score=104.27  Aligned_cols=101  Identities=16%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796           18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT   97 (186)
Q Consensus        18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   97 (186)
                      ..|++++|+.+|++++++.+++                          |    ..+.++..+|.++..+|++++|+..++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~--------------------------p----~~~~~~~~lg~~~~~~~~~~~A~~~~~   51 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQG--------------------------K----DLAECYLGLGSTFRTLGEYRKAEAVLA   51 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCH--------------------------H----HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCC--------------------------c----cHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4689999999999999985331                          1    145899999999999999999999999


Q ss_pred             HHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           98 KALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        98 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ++++.+|+++.+++.+|.++..+|++++|+..|++++...|+++.+.....
T Consensus        52 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           52 NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999988765443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=7.7e-18  Score=109.34  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      ..+..+..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcc--cCCC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVK--DPNT  177 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~--~~~~  177 (186)
                      +..     +|++++|+.+|++++  +|+.
T Consensus        89 ~~~-----~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           89 RFD-----MADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHH-----TTCHHHHHHHHHHHHHHHSSS
T ss_pred             HHH-----ccCHHHHHHHHHHHHHhCCCc
Confidence            999     999999999999885  5543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=1.5e-17  Score=118.52  Aligned_cols=160  Identities=11%  Similarity=-0.031  Sum_probs=132.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-hhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-AESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   78 (186)
                      .+..|..+|..+...|++++|...|++++++.|.++. +|..++... ..++.+.+.    +++...|..    ..+|..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~  173 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVT  173 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC----THHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHH
Confidence            4568899999999999999999999999999999987 888888765 444444444    344444433    366666


Q ss_pred             HHHHHh-hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCC-ChHHHHHHHHHHHH
Q 044796           79 RGICFL-KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF---DPS-NNQAKRTILRKLKE  153 (186)
Q Consensus        79 ~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~  153 (186)
                      .+.... ..|++++|+..|+++++.+|+++.+|..+|.++...|++++|...|++++..   .|+ ...+|..++..+..
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            666644 3799999999999999999999999999999999999999999999999995   553 67889999988888


Q ss_pred             HHHHhhccccccchhhhhcc
Q 044796          154 MGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~  173 (186)
                           .|+++.|...+++++
T Consensus       254 -----~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          254 -----IGDLASILKVEKRRF  268 (308)
T ss_dssp             -----HSCHHHHHHHHHHHH
T ss_pred             -----cCCHHHHHHHHHHHH
Confidence                 888888888888875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.74  E-value=1.9e-17  Score=108.59  Aligned_cols=139  Identities=19%  Similarity=0.166  Sum_probs=121.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+.+++++++..|.++.++..++.+. ..++.+.+...+.......+..+.++..+|.++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  120 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL  120 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999998876 556665555544433333444568999999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      ...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++..
T Consensus       121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             HHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence            999999999999999999999999999999999999999999999999999999987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=9.2e-18  Score=118.75  Aligned_cols=165  Identities=19%  Similarity=0.189  Sum_probs=138.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc--------cCCChhhhhccchhh-hhcCchhHHHhhCCCcc-------
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRV--------ASVPERAESASAPEA-KEGQSASEKKEVAPAPE-------   67 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------   67 (186)
                      ..+..+..+|.+++..|++++|+.+|++++++        .|....++..+|.++ ..++.+.+...+.....       
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999995        566667778888776 44555544443322221       


Q ss_pred             -hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 044796           68 -MAELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--  136 (186)
Q Consensus        68 -~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--  136 (186)
                       ..+....++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|++++|+..|++++.+  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence             134567899999999999999999999999999874        777889999999999999999999999999998  


Q ss_pred             ------CCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          137 ------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       137 ------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                            +|....++..++.++..     .|++++|+..|++++
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLK-----QGKFKQAETLYKEIL  222 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence                  77778889999999988     899999999998875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.74  E-value=1.6e-17  Score=117.59  Aligned_cols=136  Identities=13%  Similarity=0.049  Sum_probs=104.8

Q ss_pred             cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHH----hhCCCcc--hhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796           21 KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK----EVAPAPE--MAELRSICHSNRGICFLKLGKFEESIK   94 (186)
Q Consensus        21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~   94 (186)
                      ++++|+.+|.++....             ...++.+.+..    ++...+.  ..+..+.++.++|.++..+|++++|+.
T Consensus        32 ~~~~A~~~~~~a~~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   98 (292)
T 1qqe_A           32 KFEEAADLCVQAATIY-------------RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD   98 (292)
T ss_dssp             HHHHHHHHHHHHHHHH-------------HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            5999999999985432             12222222222    2221111  122346899999999999999999999


Q ss_pred             HHHHHHhcCccc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHHhhcc
Q 044796           95 ECTKALELNPTY------MKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSN------NQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        95 ~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      ++++++++.|..      ..++.++|.++... |++++|+.+|++++++.|.+      ..++..+|.++..     +|+
T Consensus        99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~  173 (292)
T 1qqe_A           99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-----DGQ  173 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-----hCC
Confidence            999999997753      56899999999996 99999999999999998865      4567788888888     999


Q ss_pred             ccccchhhhhccc
Q 044796          162 FGMSTDNFKAVKD  174 (186)
Q Consensus       162 ~~~A~~~~~~~~~  174 (186)
                      +++|+.+|++++.
T Consensus       174 ~~~A~~~~~~al~  186 (292)
T 1qqe_A          174 YIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.5e-16  Score=107.25  Aligned_cols=136  Identities=15%  Similarity=0.093  Sum_probs=94.2

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc--
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK--   88 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--   88 (186)
                      +|.++...|++++|+.+|+++++++|+++.++..+|.++ ..++.+.+...+.......|.++.++..+|.++...|+  
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999887777777665 44555555544444333444445777777777765543  


Q ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      ...+...+++++..+|. ..+++.+|.++...|++++|+.+|+++++++|++ .+...+..
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~  198 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence            34556666666543332 3356677777777888999999999999999974 34444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.74  E-value=4.2e-17  Score=119.36  Aligned_cols=163  Identities=17%  Similarity=0.096  Sum_probs=130.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhcc---CC---Chhhhhccchhh-hhcCchhHHH----hh---CCCcchhHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVA---SV---PERAESASAPEA-KEGQSASEKK----EV---APAPEMAEL   71 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~---~~~~~~~~~~~~-~~~~~~~~~~----~~---~~~~~~~~~   71 (186)
                      ...++.+|..++..|++++|+.+|++++++.   |+   ...++..+|.+. ..++...+..    ++   ...+...+.
T Consensus       103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            4567889999999999999999999999872   22   345677777766 4444433332    22   222222455


Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cC-CC
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILE-----FD-PS  139 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~  139 (186)
                      .+.++..+|.++..+|++++|+.++++++.+.|..      ..++.++|.++..+|++++|+.+|+++++     .+ |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            67899999999999999999999999999885533      35899999999999999999999999999     46 77


Q ss_pred             ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          140 NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       140 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .+.++..+|.++..     .|++++|+.++++++
T Consensus       263 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          263 LPQAYFLITQIHYK-----LGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence            88889999999988     999999999998875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.1e-16  Score=119.69  Aligned_cols=171  Identities=18%  Similarity=0.065  Sum_probs=110.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhc---------cCCChhhhhccchhh-hhcCchhHHHhhCCC--------cc
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRV---------ASVPERAESASAPEA-KEGQSASEKKEVAPA--------PE   67 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~   67 (186)
                      +..+..+|.++...|++++|+++|++++++         +|.....+..+|.++ ..++.+.+...+...        ..
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            456788999999999999999999999987         344444555666555 344444433222111        11


Q ss_pred             hhHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCChH
Q 044796           68 MAELRSICHSNRGICFLKL--GKFEESIKECTKALELNPTYMKALIRRAEAHEK---LEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        68 ~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      ..+..+.++..+|.++...  ++|++|+.+|+++++++|+++.++..+|.++..   .+++++|+..|+++++++|+++.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence            1112346666666665543  467888888888888888888887777777544   45667788888888888888887


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          143 AKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      ++..++..+..++.. .+++++|+..+++++..++
T Consensus       211 ~~~~l~~~~~~~~~~-~~~~~~a~~~~~~al~~~~  244 (472)
T 4g1t_A          211 LKVLLALKLHKMREE-GEEEGEGEKLVEEALEKAP  244 (472)
T ss_dssp             HHHHHHHHHHHCC-------CHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhCc
Confidence            777777655553332 4677778888877754333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.73  E-value=6.5e-17  Score=109.38  Aligned_cols=167  Identities=9%  Similarity=-0.081  Sum_probs=136.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhc----CchhHHHhhCCCcchhHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEG----QSASEKKEVAPAPEMAELRSICHSNR   79 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (186)
                      ..+.+++.+|..+...+++++|+.+|+++++.  .++.+++.+|.++..+    +...+...+...  ..+..+.+++.+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A--~~~g~~~a~~~L   91 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKA--VEAGSKSGEIVL   91 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH--HHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HHCCCHHHHHHH
Confidence            35788999999999999999999999999875  6788999999887554    444444443322  122356899999


Q ss_pred             HHHHhh----hccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           80 GICFLK----LGKFEESIKECTKALELNP--TYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        80 a~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      |.++..    .+++++|+.+|+++++..|  .++.+++.+|.++..    .+++++|+.+|+++++. |.++.+.+.++.
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~  170 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM  170 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            999998    8899999999999999988  569999999999999    88999999999999998 778889999998


Q ss_pred             HHHHHHH-HhhccccccchhhhhcccC
Q 044796          150 KLKEMGN-SILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       150 ~~~~~~~-~~~~~~~~A~~~~~~~~~~  175 (186)
                      ++..-.. ....++++|+.+|+++.+.
T Consensus       171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          171 MFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            8765110 0244889999999988644

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.72  E-value=3.9e-17  Score=98.69  Aligned_cols=101  Identities=18%  Similarity=0.203  Sum_probs=60.1

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ..+..+|.+++..|++++|+.+|+++++.+|.+                                 +.++..+|.++...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------------~~~~~~~a~~~~~~   53 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------------------------SKYWLMKGKALYNL   53 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------------------------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------------------------HHHHHHHHHHHHHc
Confidence            344555666666666666666666666665551                                 24555566666666


Q ss_pred             ccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC
Q 044796           87 GKFEESIKECTKALELNPT--YMKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~  140 (186)
                      |++++|+..++++++.+|.  ++.++..+|.++..+ |++++|+.++++++...|.+
T Consensus        54 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            6666666666666666666  566666666666666 66666666666666665554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.72  E-value=2.9e-16  Score=103.00  Aligned_cols=110  Identities=16%  Similarity=0.249  Sum_probs=101.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH-H
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC-F   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~   83 (186)
                      .+..++.+|.++...|++++|+.+|+++++++|.+                                 +.++..+|.+ +
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------~~~~~~la~~l~   89 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------------------------AELYAALATVLY   89 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------------------------------HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------------------HHHHHHHHHHHH
Confidence            46789999999999999999999999999999993                                 3788899999 8


Q ss_pred             hhhccH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           84 LKLGKF--EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        84 ~~~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ...|++  ++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.....+
T Consensus        90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A           90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            899998  9999999999999999999999999999999999999999999999999987654433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.72  E-value=2.7e-17  Score=126.25  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=95.8

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTK   98 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   98 (186)
                      .|++++|+..|+++++.+|+                                 .+.++..+|.++...|++++|+..+++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~---------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~   48 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ---------------------------------DFVAWLMLADAELGMGDTTAGEMAVQR   48 (568)
T ss_dssp             -------------------C---------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            47899999999999999999                                 337899999999999999999999999


Q ss_pred             HHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796           99 ALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus        99 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      +++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++..     .|++++|++.|++++..++
T Consensus        49 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p  122 (568)
T 2vsy_A           49 GLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-----AGQAEAAAAAYTRAHQLLP  122 (568)
T ss_dssp             HHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999     9999999999999864433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.2e-16  Score=95.51  Aligned_cols=96  Identities=14%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN------NQAKR  145 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  145 (186)
                      .+..+..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999999999999999999999999      88888


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhc
Q 044796          146 TILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      .++.++..     .|+++.|+..+++.
T Consensus        83 ~~~~~~~~-----~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           83 RLELAQGA-----VGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHH-----HHCCCCCSSSSSSC
T ss_pred             HHHHHHHH-----HHhHhhhHhHHHHh
Confidence            88888888     88999999988875

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.72  E-value=6.9e-17  Score=101.44  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+..+..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..++++++++|+++.++..+|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .|++++|+..|++++
T Consensus        88 ~~-----~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           88 LE-----MESYDEAIANLQRAY  104 (137)
T ss_dssp             HH-----TTCHHHHHHHHHHHH
T ss_pred             HH-----HhhHHHHHHHHHHHH
Confidence            99     999999999999885

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.71  E-value=3.8e-17  Score=105.86  Aligned_cols=101  Identities=11%  Similarity=0.126  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhc------------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALEL------------------NPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      .+..+..+|..++..|+|++|+..|++++..                  +|..+.++.++|.++..+|++++|+..+.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3578999999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          134 LEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       134 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      ++++|+++.+++.+|.++..     +|++++|+..|++++..+|
T Consensus        90 l~~~p~~~~a~~~~g~~~~~-----~g~~~~A~~~~~~al~l~p  128 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIA-----AWKLDEAEEDLKLLLRNHP  128 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCG
T ss_pred             HhcCCcchHHHHHHHHHHHH-----HhcHHHHHHHHHHHHhcCC
Confidence            99999999999999999999     9999999999999864433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=2.4e-16  Score=110.22  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=118.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-----hcCchhHHHhhCCCcchhHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-----EGQSASEKKEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (186)
                      ..+..++.+|..+...|++++|+.+|+++++  |.++.++..+|.++.     .++.+.+...+.......  .+.++..
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~   79 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL   79 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence            3567888899999999999999999999888  777788888887763     344444443332221111  4578888


Q ss_pred             HHHHHhh----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           79 RGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        79 ~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      +|.++..    .+++++|+.+|+++++.+  ++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++..++.+
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~  155 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence            8888888    888888888888888873  78888888888888    888888888888888865  56677777766


Q ss_pred             HHHHHHHhhccccccchhhhhcccC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +.. |....+++++|+.+|+++++.
T Consensus       156 ~~~-~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          156 YDA-GRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHH-TSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHc-CCCCCCCHHHHHHHHHHHHHC
Confidence            543 111256677777777766544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.71  E-value=1.9e-16  Score=115.75  Aligned_cols=164  Identities=12%  Similarity=0.035  Sum_probs=130.6

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC------Chhhhhccchhh-hhcCchhHH----HhhC---CCcchhH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASV------PERAESASAPEA-KEGQSASEK----KEVA---PAPEMAE   70 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~-~~~~~~~~~----~~~~---~~~~~~~   70 (186)
                      ....++.+|..++..|++++|+.+|++++++.+.      ...++..+|.+. ..++...+.    +++.   ..+...+
T Consensus       100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  179 (378)
T 3q15_A          100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI  179 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence            4567888999999999999999999999987543      334666677665 334443332    2222   2222233


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCC
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILE-----FDPS  139 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~  139 (186)
                      ..+.++..+|.++...|++++|+.++++++.+.+      ....++.++|.++..+|++++|+.+|++++.     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            4568999999999999999999999999998633      2356899999999999999999999999999     7888


Q ss_pred             ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          140 NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       140 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .+.++..+|.++..     .|++++|+..+++++
T Consensus       260 ~~~~~~~la~~~~~-----~g~~~~A~~~~~~al  288 (378)
T 3q15_A          260 LPKVLFGLSWTLCK-----AGQTQKAFQFIEEGL  288 (378)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence            88899999999988     999999999999885

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.70  E-value=6.7e-17  Score=97.63  Aligned_cols=99  Identities=20%  Similarity=0.192  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKL  151 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~  151 (186)
                      ..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|.  +..++..++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999999  999999999888


Q ss_pred             HHHHHHhh-ccccccchhhhhcccCCC
Q 044796          152 KEMGNSIL-GRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       152 ~~~~~~~~-~~~~~A~~~~~~~~~~~~  177 (186)
                      ..     . |++++|++++++++...+
T Consensus        87 ~~-----~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           87 RY-----IEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             TT-----CSSCSHHHHHHHHHHGGGCC
T ss_pred             HH-----HhCCHHHHHHHHHHHhhccc
Confidence            88     9 999999999999875444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.70  E-value=1.4e-15  Score=102.37  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=99.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..++.+|.++...|++++|+.+|++++..+|.                                 .+.++..+|.++..
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------~~~~~~~lg~~~~~   83 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---------------------------------LAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------------------CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------------------------chHHHHHHHHHHHH
Confidence            568999999999999999999999999999998                                 23789999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcccH----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYM----------------KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .|++++|+..++++++..|.+.                .+++.+|.++..+|++++|+..|+++++++|++.......+
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence            9999999999999999777655                99999999999999999999999999999998765444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.70  E-value=1.4e-17  Score=124.80  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=121.2

Q ss_pred             ccHHHHHHHHHH----HHhccCCChhhhhccchhh-------------hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796           20 GKYEEALLQYEV----ALRVASVPERAESASAPEA-------------KEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus        20 ~~~~~A~~~~~~----al~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ..++.|+..+.+    ++.++|..  ++...+...             .......+...+.......+..+..+..+|.+
T Consensus       200 ~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~  277 (457)
T 1kt0_A          200 IGIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV  277 (457)
T ss_dssp             HHHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence            367777777777    67777764  343333221             11122333334445555566677899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ++..|+|++|+..|++++.++|.+               ..+++++|.|+..+|++++|+.+|+++++++|++..+++++
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~  357 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR  357 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            999999999999999999999988               68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                      |.++..     ++++++|+..|++++..+|..
T Consensus       358 g~a~~~-----~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          358 GEAQLL-----MNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHH-----TTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHH-----ccCHHHHHHHHHHHHHhCCCC
Confidence            999999     999999999999997554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.69  E-value=1.1e-16  Score=117.67  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=130.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh----hhhhccchhh-hhcCchhHHHhhCCCcc------hhHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE----RAESASAPEA-KEGQSASEKKEVAPAPE------MAELR   72 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~   72 (186)
                      ..+..+..+|..++..|++++|+.+|+++++..|+++    .++..+|.++ ..++.+.+...+.....      ..+..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            4567788999999999999999999999999999987    4666777766 44555444443322222      24556


Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhcC-----------------HHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEH-----------------FEEAIAD  129 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~  129 (186)
                      ..++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+                 +++|+..
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            788999999999999999999999999988      56677889999999999999                 9999999


Q ss_pred             HHHHHhcCC------CChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          130 MKKILEFDP------SNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       130 ~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +++++++.+      ....++..+|.++..     .|++++|+.+|++++
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al  250 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYL-----LGDFQAAIEHHQERL  250 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence            999887642      334567777777777     888888988888774

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=5.5e-16  Score=94.31  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      +..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhccccccchhhhhcccCCCC
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      .     .|++++|+..|++++..+|.
T Consensus        84 ~-----~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           84 F-----LNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             H-----TTCHHHHHHHHHHHHTTCTT
T ss_pred             H-----HhhHHHHHHHHHHHHHcCCC
Confidence            8     99999999999998655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=1.4e-16  Score=113.45  Aligned_cols=167  Identities=8%  Similarity=-0.008  Sum_probs=124.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC------hhhhhccchhh-hhcCchhHHHhh----CCCc--chhH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP------ERAESASAPEA-KEGQSASEKKEV----APAP--EMAE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~-~~~~~~~~~~~~----~~~~--~~~~   70 (186)
                      .....+...|.++...|++++|+.+|.+++.+.+..      ..++..+|.++ ..++...+...+    ...+  ....
T Consensus        34 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~  113 (307)
T 2ifu_A           34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD  113 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            456678888999999999999999999999987654      23555666665 334444443322    2211  1122


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH--
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ--  142 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--  142 (186)
                      ....++.++|.++.. |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+.+|++++.+.|.+..  
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            345788999999999 99999999999999987653      578999999999999999999999999998776542  


Q ss_pred             ----HHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          143 ----AKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       143 ----~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                          ++..++.++..     .|++++|+.+|++++ ..|
T Consensus       193 ~~~~~~~~~g~~~~~-----~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLH-----RADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHT-TST
T ss_pred             HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHh-CCC
Confidence                44445544444     799999999999887 444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.68  E-value=5.3e-16  Score=99.44  Aligned_cols=138  Identities=20%  Similarity=0.192  Sum_probs=114.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+..+|..+...|++++|+.++.++++..+...                           .......++..+|.++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~l~~~~   59 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---------------------------DKAAERIAYSNLGNAY   59 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC---------------------------CchHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999876511                           1112347889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN------NQAKRTILRKL  151 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~  151 (186)
                      ...|++++|+..+++++...+..      ..++..+|.++...|++++|+..+++++.+.+..      ..++..++.++
T Consensus        60 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           60 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence            99999999999999999875543      6689999999999999999999999999874322      45566777777


Q ss_pred             HHHHHHhhccccccchhhhhcc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..     .|++++|+..+++++
T Consensus       140 ~~-----~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          140 TA-----LGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HH-----HTCHHHHHHHHHHHH
T ss_pred             HH-----ccCHHHHHHHHHHHH
Confidence            66     899999999998875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.68  E-value=4.9e-16  Score=105.92  Aligned_cols=137  Identities=11%  Similarity=-0.007  Sum_probs=109.7

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh---hhhccchhhhh-------------------cCch----hHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER---AESASAPEAKE-------------------GQSA----SEK   59 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~-------------------~~~~----~~~   59 (186)
                      ..+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.+...                   ++.+    ...
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            568999999999999999999999999999999876   67777765422                   2222    233


Q ss_pred             HhhCCCcchhHHH-------------HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhcCH
Q 044796           60 KEVAPAPEMAELR-------------SICHSNRGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHF  123 (186)
Q Consensus        60 ~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~  123 (186)
                      ..+...|......             ......+|.++...|++++|+..|+++++..|+++   .+++.+|.++..+|++
T Consensus       121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            4455555443111             12236789999999999999999999999999875   7899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChH
Q 044796          124 EEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus       124 ~~A~~~~~~al~~~p~~~~  142 (186)
                      ++|+..++++....|++.+
T Consensus       201 ~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          201 AQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHhhCCCchh
Confidence            9999999999999998754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=8.8e-17  Score=117.67  Aligned_cols=164  Identities=18%  Similarity=0.129  Sum_probs=116.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh------hhhccchhh-hhcC--------------------chh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER------AESASAPEA-KEGQ--------------------SAS   57 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~-~~~~--------------------~~~   57 (186)
                      .+..+..+|.++...|++++|+.++.+++.+.|....      ++..+|.+. ..++                    ...
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            4567778888888888888888888888887765432      555566554 3333                    322


Q ss_pred             HHHhhCCCc------chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHhcCHHH
Q 044796           58 EKKEVAPAP------EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM------KALIRRAEAHEKLEHFEE  125 (186)
Q Consensus        58 ~~~~~~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~  125 (186)
                      +...+....      ...+....++..+|.++...|++++|+..+++++++.|...      .++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            222211111      11334457788888888888888888888888888765443      378888888888889988


Q ss_pred             HHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          126 AIADMKKILEFDPSN------NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       126 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      |+..+++++.+.|..      ..++..+|.++..     .|++++|+..|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-----LQDYEKAIDYHLKHL  294 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHH
Confidence            988888888877665      5566777777776     888888888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2.1e-16  Score=121.04  Aligned_cols=168  Identities=14%  Similarity=-0.026  Sum_probs=138.3

Q ss_pred             hHHHHHHHhHhHHHHccc----------HHHHHHHHHHHHhccCCChhhhhccchhhhh-c--CchhHHHhhCCCcchhH
Q 044796            4 NEANEAKLEGNKLFAEGK----------YEEALLQYEVALRVASVPERAESASAPEAKE-G--QSASEKKEVAPAPEMAE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~   70 (186)
                      +...+|..++.++...|+          +++++..+++++..+|++..+|..++.+... +  ..+.+...+......++
T Consensus        61 ~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~  140 (567)
T 1dce_A           61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE  140 (567)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc
Confidence            346789999999999888          9999999999999999999999998887633 3  22444444443334444


Q ss_pred             HHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHh
Q 044796           71 LRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKL--------------EHFEEAIADMKKILE  135 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~  135 (186)
                      .+..+|..++.+....| .+++++.+++++++.+|.+..+|+.+|.++..+              +.+++|++++.+++.
T Consensus       141 ~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          141 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence            45599999999999999 899999999999999999999999999998885              668999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhhccccc------------cchhhhhcccCC
Q 044796          136 FDPSNNQAKRTILRKLKEMGNSILGRFGM------------STDNFKAVKDPN  176 (186)
Q Consensus       136 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~------------A~~~~~~~~~~~  176 (186)
                      ++|++..+|..++.++..     .+++++            |+.+|.+++..+
T Consensus       221 ~~P~~~saW~y~~~ll~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~  268 (567)
T 1dce_A          221 TDPNDQSAWFYHRWLLGR-----AEPHDVLCCVHVSREEACLSVCFSRPLTVG  268 (567)
T ss_dssp             HCSSCSHHHHHHHHHHSC-----CCCCSCEEEEEEETTTTEEEEEEEEEECTT
T ss_pred             hCCCCccHHHHHHHHHhc-----CCCccceeeeeeccCCceEEEEeccceecc
Confidence            999999999999988877     666555            666777775443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.67  E-value=2.9e-16  Score=97.75  Aligned_cols=101  Identities=20%  Similarity=0.302  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           70 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      +.....+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhcccC
Q 044796          150 KLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       150 ~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ++..     .|++++|+..|++++..
T Consensus        93 ~~~~-----~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEA-----MKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHH-----HhhHHHHHHHHHHHHHh
Confidence            9998     99999999999988643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.67  E-value=4.4e-16  Score=104.05  Aligned_cols=106  Identities=18%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             CcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH----------------HHHHHHHHHHHHhcCHHHHHH
Q 044796           65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM----------------KALIRRAEAHEKLEHFEEAIA  128 (186)
Q Consensus        65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~  128 (186)
                      .....+..+..+..+|..+...|+|++|+..|++++...|.++                .++.++|.++..+|++++|+.
T Consensus        30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3334444568899999999999999999999999999999887                899999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +++++++++|.++.++..+|.++..     +|++++|+..|++++..
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMY-----FGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999     99999999999998633

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=3.5e-16  Score=114.49  Aligned_cols=164  Identities=17%  Similarity=0.149  Sum_probs=125.3

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh----hhhhccchhh-hhcCchhHHHhhCCC------cchhHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE----RAESASAPEA-KEGQSASEKKEVAPA------PEMAELRS   73 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~   73 (186)
                      .+..++..|..++..|++++|+.+|+++++..|.++    .++..+|.+. ..++...+...+...      ....+..+
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            456788999999999999999999999999999885    4566677665 444544444332211      11234456


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcC--------------------HHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEH--------------------FEEAI  127 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~~A~  127 (186)
                      .++..+|.++...|++++|+..+++++.+.|..      ..++..+|.++...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            888899999999999999999999999886654      4588889999999999                    99999


Q ss_pred             HHHHHHHhc------CCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          128 ADMKKILEF------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       128 ~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..+.+++.+      .|....++..+|.++..     .|++++|+..|++++
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al  214 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYL-----LGNFRDAVIAHEQRL  214 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHH
Confidence            999998876      33345567777777777     888888888888774

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.67  E-value=6e-16  Score=109.47  Aligned_cols=165  Identities=14%  Similarity=0.029  Sum_probs=123.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhh------hhccchhhh-hcCchhH----HHhhCCCcc--hhH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERA------ESASAPEAK-EGQSASE----KKEVAPAPE--MAE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~-~~~~~~~----~~~~~~~~~--~~~   70 (186)
                      +....+...+..++..|++++|+..+++++...+..+..      +..+|.... .++.+.+    .+++.....  ...
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            456677788888999999999999999999988877663      223454442 2233332    233332111  111


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---  140 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---  140 (186)
                      ....++..+|.++..+|++++|+.+|+++++.       .+....+++++|.++..+|++++|+.++++++++.+..   
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            23468999999999999999999999999952       33446689999999999999999999999999986544   


Q ss_pred             ---hHHHHHHHHHHHHHHHHhhcc-ccccchhhhhcc
Q 044796          141 ---NQAKRTILRKLKEMGNSILGR-FGMSTDNFKAVK  173 (186)
Q Consensus       141 ---~~~~~~l~~~~~~~~~~~~~~-~~~A~~~~~~~~  173 (186)
                         +.++..+|.++..     +|+ +++|+++|++++
T Consensus       233 ~~~~~~~~~lg~~~~~-----~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRK-----LEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             TTHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHH
Confidence               6788889988888     774 588888887774

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.67  E-value=2.4e-15  Score=104.84  Aligned_cols=163  Identities=10%  Similarity=0.029  Sum_probs=130.0

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccc-------h----------------------------
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA-------P----------------------------   48 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-------~----------------------------   48 (186)
                      ++...++..|..+ ..+++..|..+|.+++.++|+..++|..+.       .                            
T Consensus         5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A            5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            4567788888886 689999999999999999999999998761       0                            


Q ss_pred             ----------------------------hhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 044796           49 ----------------------------EAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKAL  100 (186)
Q Consensus        49 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  100 (186)
                                                  +...+..+++...+.......|... ..+.+|.++...++|++|+..++.++
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~  162 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG  162 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence                                        0012334555556655555555566 88889999999999999999999887


Q ss_pred             hcC-ccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          101 ELN-PTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFD--PS-NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       101 ~~~-p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ... |.. ..+++.+|.++..+|++++|+..|++++.-.  |. .+.+++.+|.++..     +|+.++|+..|++++
T Consensus       163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-----lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-----QGNESAAVALLEWLQ  235 (282)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence            753 222 4589999999999999999999999998654  55 66789999999999     999999999999885

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.67  E-value=1.4e-15  Score=94.15  Aligned_cols=102  Identities=23%  Similarity=0.285  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           69 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        69 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .+..+..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+.+++..+|+++.++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .++..     .|++++|+..|++++..
T Consensus        88 ~~~~~-----~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           88 LALSS-----LNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHH-----hCCHHHHHHHHHHHHhc
Confidence            99998     99999999999988643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.67  E-value=8.9e-17  Score=112.04  Aligned_cols=152  Identities=18%  Similarity=0.144  Sum_probs=123.7

Q ss_pred             HHcccHHHHHHHHHHHHhcc--------CCChhhhhccchhh-hhcCchhHHHhhCCCc--------chhHHHHHHHHHH
Q 044796           17 FAEGKYEEALLQYEVALRVA--------SVPERAESASAPEA-KEGQSASEKKEVAPAP--------EMAELRSICHSNR   79 (186)
Q Consensus        17 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~   79 (186)
                      ...|++++|+.+|+++++..        |....++..+|.+. ..++...+...+....        ...+..+.++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45678888888888888742        45566777888776 4455555544433222        2235567899999


Q ss_pred             HHHHhhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHH
Q 044796           80 GICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--------DPSNNQA  143 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  143 (186)
                      |.++...|++++|+..+++++..        +|....++..+|.++...|++++|+..|++++.+        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999998        5888899999999999999999999999999999        7777888


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          144 KRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +..+|.++..     .|++++|+..|++++
T Consensus       172 ~~~la~~~~~-----~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          172 KNNLASCYLK-----QGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence            9999999988     899999999998775

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.67  E-value=1.5e-15  Score=106.08  Aligned_cols=160  Identities=14%  Similarity=0.117  Sum_probs=97.4

Q ss_pred             HHHHHHhHhHHHH----cccHHHHHHHHHHHHhccCCChhhhhccchhhh-----hcCchhHHHhhCCCcchhHHHHHHH
Q 044796            6 ANEAKLEGNKLFA----EGKYEEALLQYEVALRVASVPERAESASAPEAK-----EGQSASEKKEVAPAPEMAELRSICH   76 (186)
Q Consensus         6 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   76 (186)
                      +..++.+|.++..    .+++++|+.+|+++++.+  ++.++..+|.++.     .++.+.+...+.......  .+.++
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  149 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC  149 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence            4556666666666    666666666666666652  5566666665553     233333333222111111  23566


Q ss_pred             HHHHHHHhh----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           77 SNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        77 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ..+|.++..    .+++++|+.+++++++.+  ++.+++.+|.++..    .+++++|+.+|+++++.+|  +.++..++
T Consensus       150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~  225 (273)
T 1ouv_A          150 TILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence            667777766    677777777777777653  45677777777777    7777777777777777655  56666666


Q ss_pred             HHHHHHHHHhhccccccchhhhhccc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      .++.. |....+++++|+.+|++++.
T Consensus       226 ~~~~~-g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          226 AMQYN-GEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHHT-TSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHc-CCCcccCHHHHHHHHHHHHH
Confidence            55542 22235677778888877753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.66  E-value=1.7e-16  Score=101.04  Aligned_cols=96  Identities=21%  Similarity=0.302  Sum_probs=85.0

Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF----------EEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .+.+.|++|+..++++++++|+++.+|.++|.++..++++          ++|+..|+++++++|++..+++++|.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999876          599999999999999999999999999999


Q ss_pred             HHH------Hhhccccccchhhhhcc--cCCCCc
Q 044796          154 MGN------SILGRFGMSTDNFKAVK--DPNTGA  179 (186)
Q Consensus       154 ~~~------~~~~~~~~A~~~~~~~~--~~~~~~  179 (186)
                      +|.      ...+++++|+.+|++++  +|+...
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            763      23579999999999996  555433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.66  E-value=2.2e-15  Score=106.88  Aligned_cols=150  Identities=11%  Similarity=-0.094  Sum_probs=123.1

Q ss_pred             hHHHHHHHhHhHHHHcc--cHHHHHHHHHHHHhccCCChhhhhccchhh----hh----cCchhHHHhhCCCcchhHHHH
Q 044796            4 NEANEAKLEGNKLFAEG--KYEEALLQYEVALRVASVPERAESASAPEA----KE----GQSASEKKEVAPAPEMAELRS   73 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~   73 (186)
                      +...+|..+|.++...|  ++++++.++.+++..+|++..+|..++.+.    ..    .........+.......|.+.
T Consensus        65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A           65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH
Confidence            34577888999998888  999999999999999999999998887666    22    233344433333333444455


Q ss_pred             HHHHHHHHHHhhhccHH--HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC------HHHHHHHHHHHHhcCCCChHHHH
Q 044796           74 ICHSNRGICFLKLGKFE--ESIKECTKALELNPTYMKALIRRAEAHEKLEH------FEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .+|..++.+....|.++  +++.+++++++.+|.+..+|..++.++...|.      ++++++++.+++..+|+|..+|.
T Consensus       145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~  224 (306)
T 3dra_A          145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN  224 (306)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence            99999999999999888  99999999999999999999999999998887      89999999999999999999999


Q ss_pred             HHHHHHHH
Q 044796          146 TILRKLKE  153 (186)
Q Consensus       146 ~l~~~~~~  153 (186)
                      .++.++..
T Consensus       225 y~~~ll~~  232 (306)
T 3dra_A          225 YLLGIHER  232 (306)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988877

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.66  E-value=1.3e-16  Score=117.26  Aligned_cols=164  Identities=15%  Similarity=0.114  Sum_probs=126.0

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc------cCCChhhhhccchhh-hhcCchhHHHhhCCCcch------hHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV------ASVPERAESASAPEA-KEGQSASEKKEVAPAPEM------AEL   71 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~   71 (186)
                      .+..+..+|.++...|++++|+.+|++++.+      .|....++..+|.++ ..++...+...+......      .+.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  164 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS  164 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence            3567889999999999999999999999988      566667777787776 445554444433322222      344


Q ss_pred             HHHHHHHHHHHHhhhcc-----------------HHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHhcCHHHHHH
Q 044796           72 RSICHSNRGICFLKLGK-----------------FEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIA  128 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~  128 (186)
                      ...++..+|.++...|+                 +++|+.++++++.+.      +....++..+|.++...|++++|+.
T Consensus       165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (411)
T 4a1s_A          165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE  244 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            56788899999999999                 999999999988763      3445688899999999999999999


Q ss_pred             HHHHHHhcCCCChH------HHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          129 DMKKILEFDPSNNQ------AKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       129 ~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ++++++++.|....      ++..++.++..     .|++++|+..|++++
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          245 HHQERLRIAREFGDRAAERRANSNLGNSHIF-----LGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-----CcCHHHHHHHHHHHH
Confidence            99999988776544      67777777766     888888888888774

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.66  E-value=4.2e-16  Score=96.80  Aligned_cols=97  Identities=19%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---NQAKRTI  147 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  147 (186)
                      ..++.+|.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4567899999999999999999999999999988   899999999999999999999999999999999   8889999


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcccC
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      |.++..     .|++++|+..|++++..
T Consensus        83 a~~~~~-----~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           83 GLSQYG-----EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHH
Confidence            999998     99999999999988633

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.65  E-value=4.4e-16  Score=110.82  Aligned_cols=164  Identities=17%  Similarity=0.151  Sum_probs=122.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh----hhhhccchhh-hhcCchhHHHhhCCCc------chhHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE----RAESASAPEA-KEGQSASEKKEVAPAP------EMAELRS   73 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~   73 (186)
                      .+..++..|..++..|++++|+.+|+++++..|.++    .++..+|... ..++.+.+...+....      ...+...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            356788899999999999999999999999999985    4556667665 4445444443322211      1234456


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcC--------------------HHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEH--------------------FEEAI  127 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~~A~  127 (186)
                      .++..+|.++...|++++|+..++++++..|..      ..++..+|.++...|+                    +++|+
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            788889999999999999999999998875543      4488888999999999                    89999


Q ss_pred             HHHHHHHhc------CCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          128 ADMKKILEF------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       128 ~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..+++++.+      .|....++..++.++..     .|++++|+..+++++
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~  210 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYL-----LGNFRDAVIAHEQRL  210 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHH
Confidence            998888876      23334566777777666     788888888887764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.65  E-value=2.7e-15  Score=106.13  Aligned_cols=165  Identities=15%  Similarity=0.035  Sum_probs=126.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhh------hhccchhh-hhcCchhHH----HhhCCCcch--hH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERA------ESASAPEA-KEGQSASEK----KEVAPAPEM--AE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~-~~~~~~~~~----~~~~~~~~~--~~   70 (186)
                      .....+...+..++..|++++|+..+.++++..|.....      +..+|... ..++.+.+.    +++...+..  ..
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            556788889999999999999999999999998876643      33444444 223443333    334332222  11


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHH---hcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKAL---ELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS----  139 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----  139 (186)
                      ....++..+|.++...|++++|+.++++++   +..|++    ..+++++|.++..+|++++|+.++++++++.+.    
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            235789999999999999999999999999   445543    268999999999999999999999999987643    


Q ss_pred             --ChHHHHHHHHHHHHHHHHhhcccccc-chhhhhcc
Q 044796          140 --NNQAKRTILRKLKEMGNSILGRFGMS-TDNFKAVK  173 (186)
Q Consensus       140 --~~~~~~~l~~~~~~~~~~~~~~~~~A-~~~~~~~~  173 (186)
                        ...++..+|.++..     +|++++| ..+|++++
T Consensus       233 ~~~~~~~~~lg~~y~~-----~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRK-----LEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             SSHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHH
Confidence              26778888888888     8999999 67787764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.65  E-value=3.3e-16  Score=111.51  Aligned_cols=164  Identities=18%  Similarity=0.135  Sum_probs=116.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh------hhhccchhh-hhcC--------------------chh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER------AESASAPEA-KEGQ--------------------SAS   57 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~-~~~~--------------------~~~   57 (186)
                      .+..+..+|.++...|++++|+.++.+++++.|....      ++..+|.+. ..++                    .+.
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence            4667788888888888899999888888887765433      555556554 2333                    222


Q ss_pred             HHHhhCCCc------chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHH
Q 044796           58 EKKEVAPAP------EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEE  125 (186)
Q Consensus        58 ~~~~~~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~  125 (186)
                      +...+....      ...+..+.++..+|.++...|++++|+..+++++.+.|..      ..++..+|.++...|++++
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence            222221111      1123345678888999999999999999999988875543      3378888999999999999


Q ss_pred             HHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          126 AIADMKKILEFDPSN------NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       126 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      |+..+++++.+.|..      ..++..++.++..     .|++++|+..+++++
T Consensus       242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-----LQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHH
Confidence            999999988876655      5566777777777     888888888887764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.65  E-value=1.7e-15  Score=110.78  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           69 AELRSICHSNRGICFLKLGKFEESIKECTKALELN-------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        69 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      .+..+.++..+|.++..+|++++|+.++++++.+.       |....++..+|.++..+|++++|+.+|++++++.|...
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            33467899999999999999999999999999983       33456899999999999999999999999999866543


Q ss_pred             ------HHHHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796          142 ------QAKRTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       142 ------~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                            .++.++|.++..     .|++++|+.+|++++.
T Consensus       219 ~~~~~~~~~~~lg~~y~~-----~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNS-----QSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH
Confidence                  477888888877     9999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=6.3e-16  Score=118.44  Aligned_cols=164  Identities=12%  Similarity=0.003  Sum_probs=132.9

Q ss_pred             HHHHccc-HHHHHHHHHHHHhccCCChhhhhccchhhh-hcC----------chhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796           15 KLFAEGK-YEEALLQYEVALRVASVPERAESASAPEAK-EGQ----------SASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus        15 ~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .....|+ .++|+..+.+++..+|++..+|..++.+.. .+.          .+++...+.......|.+..+|..++.+
T Consensus        37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~  116 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3344554 468899999999999999999999887762 222          3334333333333444455999999999


Q ss_pred             Hhhhc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--
Q 044796           83 FLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS--  157 (186)
Q Consensus        83 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--  157 (186)
                      ....+  ++++++.+++++++.+|.+..+|..++.++...| .++++++++.++++.+|.+..+|..++.++..++..  
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~  196 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  196 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence            99999  7799999999999999999999999999999999 999999999999999999999999999999885322  


Q ss_pred             -------hhccccccchhhhhcc--cCCCC
Q 044796          158 -------ILGRFGMSTDNFKAVK--DPNTG  178 (186)
Q Consensus       158 -------~~~~~~~A~~~~~~~~--~~~~~  178 (186)
                             ..+.++++++++.+++  +|++.
T Consensus       197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          197 SGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             SSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence                   1367889999998885  66543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=9.1e-16  Score=108.83  Aligned_cols=164  Identities=12%  Similarity=-0.047  Sum_probs=129.3

Q ss_pred             HhHHHHcccH-HHHHHHHHHHHhccCCChhhhhccchhhhh-c--CchhHHHhhCCCcchhHHHHHHHHHHHHHH----h
Q 044796           13 GNKLFAEGKY-EEALLQYEVALRVASVPERAESASAPEAKE-G--QSASEKKEVAPAPEMAELRSICHSNRGICF----L   84 (186)
Q Consensus        13 g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~   84 (186)
                      -......|.+ ++|+.++.++|.++|++..+|...+.+... +  ...+....+.......|.+..+|..++.+.    .
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~  118 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME  118 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence            3344555554 799999999999999999999999887733 3  344444433333333333449999999998    6


Q ss_pred             hh---ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-h
Q 044796           85 KL---GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE--EAIADMKKILEFDPSNNQAKRTILRKLKEMGNS-I  158 (186)
Q Consensus        85 ~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~  158 (186)
                      ..   +++++++.+++++++.+|.+..+|..++.++..+|.++  +++..+.++++.+|.|..+|...+.++..++.. .
T Consensus       119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred             hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence            66   78999999999999999999999999999999999998  999999999999999999999999988884321 0


Q ss_pred             hccccccchhhhhcccCC
Q 044796          159 LGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~  176 (186)
                      ...++++++++.+++..+
T Consensus       199 ~~~~~eEl~~~~~aI~~~  216 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKC  216 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            112788888888876333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.64  E-value=3.1e-15  Score=99.76  Aligned_cols=138  Identities=11%  Similarity=0.084  Sum_probs=111.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+..+|.++...|++++|+.++++++.+....                           ...+....++..+|.++
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------~~~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---------------------------GDHTAEHRALHQVGMVE   76 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---------------------------CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---------------------------CCcHHHHHHHHHHHHHH
Confidence            357788999999999999999999999999875541                           11233458899999999


Q ss_pred             hhhccHHHHHHHHHHHHhc------Cc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--h----HHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALEL------NP-TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN--N----QAKRTILRK  150 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~----~~~~~l~~~  150 (186)
                      ...|++++|+..+++++.+      +| ....++..+|.++..+|++++|+..+++++.+.+..  +    .++..++.+
T Consensus        77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  156 (203)
T 3gw4_A           77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL  156 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            9999999999999999988      33 346679999999999999999999999999764322  1    234666666


Q ss_pred             HHHHHHHhhccccccchhhhhcc
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +..     .|++++|+..+++++
T Consensus       157 ~~~-----~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          157 AQQ-----EKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHH-----TTCHHHHHHHHHHHH
T ss_pred             HHH-----CcCHHHHHHHHHHHH
Confidence            666     899999999998774

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=2e-15  Score=95.66  Aligned_cols=100  Identities=23%  Similarity=0.275  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ....+..+|..+...|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++.++|+++.++..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            45889999999999999999999999999999988   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccchhhhhcccCC
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      .++..     .|++++|+..|++++..+
T Consensus       107 ~~~~~-----~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          107 QALEK-----LGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHH-----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHH-----cCCHHHHHHHHHHHHHcC
Confidence            99998     999999999999886433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.64  E-value=1.5e-15  Score=108.52  Aligned_cols=163  Identities=11%  Similarity=0.014  Sum_probs=129.8

Q ss_pred             HHHHcccHH-HHHHHHHHHHhccCCChhhhhccchhhhh-cC----------chhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796           15 KLFAEGKYE-EALLQYEVALRVASVPERAESASAPEAKE-GQ----------SASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus        15 ~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .....|.+. +|+.++.+++.++|++..+|...+.+... +.          .......+.......|.+..+|..++.+
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            334566665 89999999999999999999988876632 11          1222332222233334455999999999


Q ss_pred             Hhhhcc--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--
Q 044796           83 FLKLGK--FEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS--  157 (186)
Q Consensus        83 ~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--  157 (186)
                      ....++  +++++.+++++++.+|.+..+|..++.++...|. +++++.++.++++.+|.|..+|..++.++..+...  
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence            999984  8999999999999999999999999999999999 69999999999999999999999999999885211  


Q ss_pred             -------hhccccccchhhhhcc--cCCC
Q 044796          158 -------ILGRFGMSTDNFKAVK--DPNT  177 (186)
Q Consensus       158 -------~~~~~~~A~~~~~~~~--~~~~  177 (186)
                             ..+.++++++++..++  +|++
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             cccccccchHHHHHHHHHHHHHHHhCCCC
Confidence                   1266888999998886  5554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.64  E-value=3.5e-15  Score=96.33  Aligned_cols=100  Identities=21%  Similarity=0.254  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      ..+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+.+++.++|.++.++..+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcccC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +..     .|++++|+..|++++..
T Consensus        91 ~~~-----~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           91 NMA-----LGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHH-----hccHHHHHHHHHHHHHh
Confidence            998     99999999999988643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.63  E-value=8.8e-15  Score=85.20  Aligned_cols=82  Identities=32%  Similarity=0.445  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+..+..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HH
Q 044796          152 KE  153 (186)
Q Consensus       152 ~~  153 (186)
                      ..
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.63  E-value=1.2e-14  Score=88.62  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC
Q 044796           24 EALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELN  103 (186)
Q Consensus        24 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  103 (186)
                      +|+..|+++++.+|+                                 ++.++..+|.++...|++++|+..|++++..+
T Consensus         3 ~a~~~~~~al~~~p~---------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   49 (115)
T 2kat_A            3 AITERLEAMLAQGTD---------------------------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD   49 (115)
T ss_dssp             CHHHHHHHHHTTTCC---------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCC---------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            578899999999998                                 23789999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHH
Q 044796          104 PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKLKEMGN  156 (186)
Q Consensus       104 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~  156 (186)
                      |+++.+++.+|.++...|++++|+..|++++.+.|.  +......+...+..++.
T Consensus        50 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           50 PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999885  44556666666666544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.63  E-value=2.7e-16  Score=95.10  Aligned_cols=96  Identities=23%  Similarity=0.429  Sum_probs=87.8

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..++.++.+|.+++..|++++|+.+|+++++.+|.+                                 +.++.++|.++
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------------~~~~~~lg~~~   48 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------------------------PVGYSNKAMAL   48 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHH
Confidence            467899999999999999999999999999999992                                 37899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKK  132 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (186)
                      ..+|++++|+..+++++.++|++      ..+++.+|.++..+|+++.|+..+++
T Consensus        49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           49 IKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            99999999999999999999998      89999999999999988877766544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.62  E-value=2.1e-14  Score=89.05  Aligned_cols=103  Identities=32%  Similarity=0.459  Sum_probs=95.3

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..+..+|.++...|++++|+.++++++...|.+                                 +..+..+|.++.
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~l~~~~~   80 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------------------------AEAWYNLGNAYY   80 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------------------------hHHHHHHHHHHH
Confidence            35678889999999999999999999999998882                                 267888999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999999999999999999999863

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.62  E-value=8.7e-16  Score=100.78  Aligned_cols=127  Identities=12%  Similarity=0.041  Sum_probs=103.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh--hhcC----chhHHHhhCCCcchhHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA--KEGQ----SASEKKEVAPAPEMAELRSICHS   77 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~   77 (186)
                      +.+..++.+|.++...|++++|+..|++++..+| ++..+...+.+.  ....    .....+++...|    .++.+++
T Consensus        38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P----~~~~~~~  112 (176)
T 2r5s_A           38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANP----DNFELAC  112 (176)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST----TCHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC----CCHHHHH
Confidence            3567899999999999999999999999999999 776665544332  1111    233334444444    3459999


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      .+|.++...|++++|+..|+++++.+|+.  +.++..+|.++..+|+.++|+..|++++.
T Consensus       113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999976  66999999999999999999999999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=1.7e-15  Score=115.29  Aligned_cols=162  Identities=13%  Similarity=-0.089  Sum_probs=133.1

Q ss_pred             HHHHHHHhHhHHHH-------cccHH-------HHHHHHHHHHh-ccCCChhhhhccchhh-hhcCchhHHH----hhCC
Q 044796            5 EANEAKLEGNKLFA-------EGKYE-------EALLQYEVALR-VASVPERAESASAPEA-KEGQSASEKK----EVAP   64 (186)
Q Consensus         5 ~a~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~-~~~~~~~~~~----~~~~   64 (186)
                      .++.|...|..+..       .|+++       +|+..|+++++ ..|++...|..++... ..++.+.+..    ++..
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            46778888888875       68876       99999999997 8999999999998876 4444444443    3444


Q ss_pred             CcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      .|...   ..+|..+|.++...|++++|+..|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.+
T Consensus       351 ~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          351 EDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  427 (530)
T ss_dssp             SSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence            33321   25899999999999999999999999999988877777776665 446899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796          144 KRTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      |..++..+..     .|+++.|...|++++.
T Consensus       428 ~~~~~~~~~~-----~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          428 VLAYIDYLSH-----LNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHHHTT-----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-----CCCHhhHHHHHHHHHh
Confidence            9999988887     8999999999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.62  E-value=5.2e-14  Score=99.50  Aligned_cols=96  Identities=18%  Similarity=0.043  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCCCh--
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKIL---EFDPSNN--  141 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~--  141 (186)
                      ...+..+|.++...|++++|+..+++++...+..      ..++..+|.++..+|++++|+.+|++++   +..|++.  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            3556779999999999999999999999865433      5689999999999999999999999999   5566643  


Q ss_pred             --HHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          142 --QAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       142 --~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                        .++.++|.++..     +|++++|+.++++++
T Consensus       195 ~~~~~~nlg~~y~~-----~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          195 DVKVRYNHAKALYL-----DSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHHHH-----HhhHHHHHHHHHHHH
Confidence              578888988888     999999999999885

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.62  E-value=2.4e-15  Score=93.13  Aligned_cols=98  Identities=17%  Similarity=0.182  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------hHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN-------NQAK  144 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  144 (186)
                      .+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+       +.++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999999999999999999999887       8888


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796          145 RTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      ..+|.++..     .|++++|+..|++++.
T Consensus        83 ~~la~~~~~-----~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           83 ARIGNSYFK-----EEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHH-----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----hccHHHHHHHHHHHHH
Confidence            899988888     9999999999998864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.61  E-value=8.7e-15  Score=89.76  Aligned_cols=98  Identities=27%  Similarity=0.383  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      +..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhccccccchhhhhcccC
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .     .|++++|+..|++++..
T Consensus        89 ~-----~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 K-----QGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             H-----TTCHHHHHHHHHHHHHH
T ss_pred             H-----hcCHHHHHHHHHHHHHh
Confidence            8     99999999999988543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=1.5e-14  Score=105.75  Aligned_cols=108  Identities=16%  Similarity=0.081  Sum_probs=91.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+..+|.++...|++++|+.+|.+++++.+...                           .....+.++.++|.++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~lg~~y  232 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---------------------------NDRFIAISLLNIANSY  232 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999865411                           1112447888999999


Q ss_pred             hhhccHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796           84 LKLGKFEESIKECTKALE-----LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP  138 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  138 (186)
                      ..+|++++|+.++++++.     .+|..+.++..+|.++..+|++++|+.++++++++.+
T Consensus       233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998     7888888999999999999999999999999998754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.61  E-value=2.7e-15  Score=106.86  Aligned_cols=152  Identities=16%  Similarity=0.156  Sum_probs=111.3

Q ss_pred             hhHHHHHHHhHhHHHH------cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHH----HhhCCCcc--hhH
Q 044796            3 LNEANEAKLEGNKLFA------EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEK----KEVAPAPE--MAE   70 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~   70 (186)
                      ...+..++..|.....      .+++++|+.+|.++.....             ..++...+.    +++...+.  ...
T Consensus         7 ~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------~~g~~~~A~~~~~~al~~~~~~~~~~   73 (307)
T 2ifu_A            7 ISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFK-------------NAKQLEQAKDAYLQEAEAHANNRSLF   73 (307)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4556667776665432      5899999999999854321             111111111    11111111  112


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN----  140 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----  140 (186)
                      ....++..+|.++..+|++++|+.+|++++.+.+.      ...++.++|.++.. |++++|+.+|++++.+.|..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            23578999999999999999999999999988432      25688999999999 99999999999999998754    


Q ss_pred             --hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          141 --NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       141 --~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                        ..++..+|.++..     +|++++|+.+|++++
T Consensus       153 ~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          153 QAAELIGKASRLLVR-----QQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence              4667788888877     999999999999885

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.61  E-value=4.7e-15  Score=105.93  Aligned_cols=174  Identities=14%  Similarity=-0.015  Sum_probs=136.5

Q ss_pred             hHHHHHHHhHhHHHHccc----------HHHHHHHHHHHHhccCCChhhhhccchhhhhcC---chhHHHhhCCCcchhH
Q 044796            4 NEANEAKLEGNKLFAEGK----------YEEALLQYEVALRVASVPERAESASAPEAKEGQ---SASEKKEVAPAPEMAE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   70 (186)
                      +...+|..++.+....+.          +++++.++..++..+|++..+|...+.+.....   .......+.......|
T Consensus        62 ~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp  141 (331)
T 3dss_A           62 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE  141 (331)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence            345678888888877665          789999999999999999999999887774322   2344443333334444


Q ss_pred             HHHHHHHHHHHHHhhhcc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHh
Q 044796           71 LRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKL--------------EHFEEAIADMKKILE  135 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~  135 (186)
                      .+..+|..++.+....|. +++++.+++++++.+|.+..+|..++.++..+              +.++++++++.+++.
T Consensus       142 rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~  221 (331)
T 3dss_A          142 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  221 (331)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence            555999999999999998 69999999999999999999999999999888              568999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHH-HH-----HhhccccccchhhhhcccCCC
Q 044796          136 FDPSNNQAKRTILRKLKEM-GN-----SILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       136 ~~p~~~~~~~~l~~~~~~~-~~-----~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      .+|+|..+|+.+..++... |.     ...+.++++++.++.+++.+|
T Consensus       222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p  269 (331)
T 3dss_A          222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP  269 (331)
T ss_dssp             HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence            9999999998666555442 21     113567788888887753333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.61  E-value=3.5e-16  Score=95.96  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             hhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           85 KLGKFEESIKECTKALEL---NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      .+|++++|+..|+++++.   +|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++..     .|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~   76 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-----LGR   76 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTC
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----cCC
Confidence            468999999999999999   699999999999999999999999999999999999999999999999999     999


Q ss_pred             ccccchhhhhccc
Q 044796          162 FGMSTDNFKAVKD  174 (186)
Q Consensus       162 ~~~A~~~~~~~~~  174 (186)
                      +++|+..|++++.
T Consensus        77 ~~~A~~~~~~al~   89 (117)
T 3k9i_A           77 YEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=5.1e-15  Score=104.23  Aligned_cols=96  Identities=20%  Similarity=0.195  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      +..+..+|..+...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.++..+|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccchhhhhcc
Q 044796          153 EMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .     +|++++|+..|++++
T Consensus        84 ~-----~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           84 E-----MESYDEAIANLQRAY   99 (281)
T ss_dssp             H-----TTCHHHHHHHHHHHH
T ss_pred             H-----cCCHHHHHHHHHHHH
Confidence            9     999999999999885

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.57  E-value=1e-14  Score=105.23  Aligned_cols=106  Identities=20%  Similarity=0.208  Sum_probs=95.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHhcCHHHHHHH
Q 044796           67 EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----------------KALIRRAEAHEKLEHFEEAIAD  129 (186)
Q Consensus        67 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~  129 (186)
                      ...+..+..+..+|..++..|+|++|+..|++++...|++.                 .+++++|.++..+|++++|+..
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33444668899999999999999999999999999999887                 4899999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          130 MKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       130 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      |+++++++|++..+++++|.++..     +|++++|+..|++++..++
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~-----~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAE-----LGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHT-----TTCHHHHHHHHHHTTC---
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999988     9999999999999964443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.56  E-value=5.9e-15  Score=105.90  Aligned_cols=161  Identities=11%  Similarity=-0.056  Sum_probs=128.7

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC--chhHHH----hhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ--SASEKK----EVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      .......+..++|+.++.++|.++|++..+|..++.+.....  .+....    .+...|..    ..+|..++.+....
T Consensus        61 r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn----y~aW~hR~wlL~~l  136 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS----YQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHh
Confidence            334445556789999999999999999999999887763322  334333    34445544    49999999999988


Q ss_pred             -c-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           87 -G-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE--------EAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        87 -~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                       + ++++++.+++++++.+|.+..+|..++.++...|.++        +++..+.++++.+|.|..+|...+.++..++.
T Consensus       137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence             7 8999999999999999999999999999999999888        99999999999999999999999998887432


Q ss_pred             H--hhccccccchhhhhcc--cCCC
Q 044796          157 S--ILGRFGMSTDNFKAVK--DPNT  177 (186)
Q Consensus       157 ~--~~~~~~~A~~~~~~~~--~~~~  177 (186)
                      .  ....++++++++++++  +|++
T Consensus       217 ~~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          217 AETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccchHHHHHHHHHHHHHHHhCCCC
Confidence            1  1112577888887775  5543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.55  E-value=5.1e-14  Score=105.37  Aligned_cols=160  Identities=11%  Similarity=-0.022  Sum_probs=130.4

Q ss_pred             HHHHHhHhHHHHcc---cHHHHHHHHHHHHhccCCChhhhhccchhhhhc-----CchhHHHhhCCCcchhHHHHHHHHH
Q 044796            7 NEAKLEGNKLFAEG---KYEEALLQYEVALRVASVPERAESASAPEAKEG-----QSASEKKEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         7 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   78 (186)
                      .+++.+|.++...|   ++++|+.+|+++.+..|.....++.+|.++..+     +...+...+....   +.++.+++.
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            46788999999999   999999999999999999988888888877443     3334443333222   445689999


Q ss_pred             HHHH-H--hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           79 RGIC-F--LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-----HFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        79 ~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      +|.+ +  ...+++++|+.+|+++.+.  .++.+++.+|.++. .|     ++++|+.+|+++.   |.++.+.+.+|.+
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI  327 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence            9998 4  5789999999999999965  48999999999998 66     9999999999999   8999999999977


Q ss_pred             HHHHHHHhhccccccchhhhhcccCC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      +.. |.....++++|+.+|+++.+++
T Consensus       328 y~~-G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          328 YRR-GYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHT-TTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHC-CCCCCcCHHHHHHHHHHHHhhC
Confidence            765 5445668899999999887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.55  E-value=3.5e-14  Score=108.14  Aligned_cols=160  Identities=11%  Similarity=-0.028  Sum_probs=124.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh-hhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE-RAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   78 (186)
                      .+..|...|..+...|++++|...|+++++..|.++ .+|..++... ..++.+.+.    +++...+.    ....+..
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~----~~~~~~~  395 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART----RHHVYVT  395 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC----CTHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC----chHHHHH
Confidence            467888999999999999999999999999999985 5788777654 334443333    34443332    2345555


Q ss_pred             HHHH-HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHH
Q 044796           79 RGIC-FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ----AKRTILRKLKE  153 (186)
Q Consensus        79 ~a~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~  153 (186)
                      .+.+ +...|++++|...|+++++.+|+++.+|..++.++...|++++|...|++++...|.++.    +|.........
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            5544 346899999999999999999999999999999999999999999999999999877665    77777766666


Q ss_pred             HHHHhhccccccchhhhhcc
Q 044796          154 MGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~  173 (186)
                           .|+.+.+...+++++
T Consensus       476 -----~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          476 -----IGDLASILKVEKRRF  490 (530)
T ss_dssp             -----SSCHHHHHHHHHHHH
T ss_pred             -----cCCHHHHHHHHHHHH
Confidence                 666666766666553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.55  E-value=1.5e-13  Score=79.84  Aligned_cols=85  Identities=31%  Similarity=0.424  Sum_probs=78.7

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..++.+|.++...|++++|+.+|+++++.+|.+                                 +.++..+|.++
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------------~~~~~~l~~~~   53 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------AEAWYNLGNAY   53 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHH
Confidence            357889999999999999999999999999999982                                 37889999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE  121 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  121 (186)
                      ...|++++|+..+++++..+|+++.++..+|.++..+|
T Consensus        54 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           54 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999988765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.55  E-value=2.7e-14  Score=104.28  Aligned_cols=101  Identities=24%  Similarity=0.330  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHh----------------cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALE----------------LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      .+..+..+|..+...|++++|+..|+++++                .+|.++.++.++|.++..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999                7888899999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          136 FDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       136 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      ++|+++.+++.+|.++..     ++++++|+..|++++..++
T Consensus       302 ~~p~~~~a~~~lg~~~~~-----~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQG-----LKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCT
T ss_pred             hCchhHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCC
Confidence            999999999999999999     9999999999999864433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.54  E-value=7.2e-14  Score=98.76  Aligned_cols=95  Identities=16%  Similarity=0.039  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCC
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEF-------DPSN  140 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~  140 (186)
                      ..+..+|.++...+++++|+.++++++...+..      ..++..+|.++..+|++++|+.+|+++++.       .|..
T Consensus       116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (293)
T 3u3w_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            345568999999999999999999999864432      347999999999999999999999999953       2233


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          141 NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       141 ~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..++.++|.++..     +|++++|+.++++++
T Consensus       196 ~~~~~nlg~~y~~-----~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          196 VKVRYNHAKALYL-----DSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----HhHHHHHHHHHHHHH
Confidence            4577888888888     999999999999885

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.54  E-value=1.1e-13  Score=99.32  Aligned_cols=148  Identities=11%  Similarity=0.009  Sum_probs=127.6

Q ss_pred             hHHHHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhhhhc---CchhHH----HhhCCCcchhHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEAKEG---QSASEK----KEVAPAPEMAELRSIC   75 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~   75 (186)
                      +...+|..++.++...| .+++++..+.+++..+|++..+|..++.+....   ......    +.+...|.+    ..+
T Consensus        86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN----y~A  161 (349)
T 3q7a_A           86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN----YHT  161 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC----HHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC----HHH
Confidence            34578899999999999 599999999999999999999999988776432   333333    344555544    499


Q ss_pred             HHHHHHHHhhhccHH--------HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCCCC
Q 044796           76 HSNRGICFLKLGKFE--------ESIKECTKALELNPTYMKALIRRAEAHEKLEH-------FEEAIADMKKILEFDPSN  140 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p~~  140 (186)
                      |..++.+....+.++        +++.+++++++.+|.+..+|..++.++..+++       ++++++++.+++..+|+|
T Consensus       162 W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          162 WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999888        99999999999999999999999999999987       799999999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 044796          141 NQAKRTILRKLKEMG  155 (186)
Q Consensus       141 ~~~~~~l~~~~~~~~  155 (186)
                      ..+|..+..++...|
T Consensus       242 ~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          242 VSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999888887744

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=5.7e-15  Score=104.27  Aligned_cols=135  Identities=8%  Similarity=-0.020  Sum_probs=101.3

Q ss_pred             cCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 044796           36 ASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA  114 (186)
Q Consensus        36 ~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  114 (186)
                      .|++.+.+..+|... ..++.+.+...+.......|.++.++..+|.++...|++++|+..+++++..+|+....+...+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            366666676666655 4455555554444433344444577777777777777788887777777777776666666667


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          115 EAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       115 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ..+...++.++|+..|++++..+|+++.++..+|.++..     .|++++|+..|.+++..
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~-----~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ-----VGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhc
Confidence            777777777778888889999999999999999999999     99999999999988643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.53  E-value=1.5e-13  Score=95.88  Aligned_cols=142  Identities=15%  Similarity=0.041  Sum_probs=118.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcch-hHHH-HHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEM-AELR-SICHSNRGI   81 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~a~   81 (186)
                      ..+.....+..+...|++++|...|..++...|.+. +.+.++.+. ..+...++...+...... .+.. ..+++.+|.
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~  179 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV  179 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence            456677788999999999999999999999999888 888888776 667777777777644332 2222 368999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcC--cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELN--PT-YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ++..+|++++|+.+|++++.-.  |. .+.+++.+|.++..+|+.++|...|++++..+|+ +.++..|.
T Consensus       180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            9999999999999999999654  55 6789999999999999999999999999999999 77776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.53  E-value=2.1e-13  Score=102.66  Aligned_cols=138  Identities=15%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+......+..+..+|+|++|+..|++++++....                         ....++.....+.++|.+|.
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~-------------------------lg~~Hp~~a~~~~nLa~~y~  362 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPV-------------------------FADTNLYVLRLLSIASEVLS  362 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTT-------------------------BCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-------------------------cCCCCHHHHHHHHHHHHHHH
Confidence            34556667777889999999999999999875541                         23344556689999999999


Q ss_pred             hhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChHH---HHHHH
Q 044796           85 KLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF-----DPSNNQA---KRTIL  148 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~  148 (186)
                      .+|+|++|+.++++++.+        +|+-...+.++|.+|..+|++++|+..|++|+.+     .|+.|.+   ...++
T Consensus       363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  442 (490)
T 3n71_A          363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM  442 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999999999976        3555678999999999999999999999999975     5666544   45566


Q ss_pred             HHHHHHHHHhhccccccchhhhhc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      .++..     ++++++|...|.++
T Consensus       443 ~~~~e-----~~~~~~ae~~~~~~  461 (490)
T 3n71_A          443 QTEME-----LRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHH-----HHHHHHHHHHHHHH
Confidence            56655     77788888887665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.53  E-value=8.7e-15  Score=110.20  Aligned_cols=98  Identities=21%  Similarity=0.272  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhccc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      ..     +|++++|+..|++++.
T Consensus        85 ~~-----~g~~~eA~~~~~~al~  102 (477)
T 1wao_1           85 MA-----LGKFRAALRDYETVVK  102 (477)
T ss_dssp             HH-----HTCHHHHHHHHHHHHH
T ss_pred             HH-----cCCHHHHHHHHHHHHH
Confidence            99     9999999999999863

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=2.8e-13  Score=98.54  Aligned_cols=164  Identities=15%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-----hhhccchhh-hhcCchhHHHhh----CCCcch--hHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-----AESASAPEA-KEGQSASEKKEV----APAPEM--AELR   72 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~-~~~~~~~~~~~~----~~~~~~--~~~~   72 (186)
                      .++.+..+|..++..|++++|+..+++++...|....     ++..+|... ..++.+.+...+    ...+..  ....
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            3567788899999999999999999999998876543     344455444 345544443332    222211  1123


Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN----  140 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----  140 (186)
                      ..++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++.+.|..    
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            4567889999999999999999999999875        4456778889999999999999999999999988763    


Q ss_pred             -hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          141 -NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       141 -~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                       ..++..++.++..     .|++++|...+++++
T Consensus       173 ~~~~~~~la~~~~~-----~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          173 QLQCLAMLIQCSLA-----RGDLDNARSQLNRLE  201 (373)
T ss_dssp             GHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence             3456677777777     899999999998774

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.51  E-value=1.7e-13  Score=81.56  Aligned_cols=82  Identities=12%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN--NQAKRTILR  149 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~  149 (186)
                      ++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++++.|..  ......+..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~   85 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD   85 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence            458999999999999999999999999999999999999999999999999999999999999998754  444445555


Q ss_pred             HHHH
Q 044796          150 KLKE  153 (186)
Q Consensus       150 ~~~~  153 (186)
                      .+..
T Consensus        86 ~l~~   89 (100)
T 3ma5_A           86 AKLK   89 (100)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.51  E-value=3.5e-14  Score=84.13  Aligned_cols=69  Identities=16%  Similarity=0.268  Sum_probs=54.9

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNPTYMK-ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      +.+|.++...|++++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45677777888888888888888888888877 8888888888888888888888888888888877763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.45  E-value=2e-12  Score=76.40  Aligned_cols=58  Identities=19%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                      ++..+|.++..+|++++|+..|+++++++|+++.++..        +.+.+++..|++++..+|++
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            55556666666666666666666666666655555432        44455555555555555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.44  E-value=1.2e-12  Score=87.09  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=95.0

Q ss_pred             HHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHH
Q 044796           16 LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKE   95 (186)
Q Consensus        16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   95 (186)
                      ++..|++++|...++.... +|.                                ..+.++..+|.++...|++++|+..
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~   48 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPA--------------------------------TASGARFMLGYVYAFMDRFDEARAS   48 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STT--------------------------------THHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC-ChH--------------------------------HHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            3568899999995554433 332                                1348899999999999999999999


Q ss_pred             HHHHHh------cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHHHHHHhhccc
Q 044796           96 CTKALE------LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF---DPS----NNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        96 ~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      +++++.      ..|....++..+|.++...|++++|+..+++++.+   .|+    ...++..+|.++..     .|++
T Consensus        49 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~  123 (203)
T 3gw4_A           49 FQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-----FGDL  123 (203)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-----HTCH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-----hCCH
Confidence            999999      55667889999999999999999999999999998   443    24557778877777     8999


Q ss_pred             cccchhhhhcc
Q 044796          163 GMSTDNFKAVK  173 (186)
Q Consensus       163 ~~A~~~~~~~~  173 (186)
                      ++|+..+++++
T Consensus       124 ~~A~~~~~~al  134 (203)
T 3gw4_A          124 AGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=6e-13  Score=80.99  Aligned_cols=79  Identities=15%  Similarity=0.218  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796           90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF  169 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~  169 (186)
                      ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..+|.++..     .|++++|+..|
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~   76 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-----QGDRAGARQAW   76 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-----cCCHHHHHHHH
Confidence            3588999999999999999999999999999999999999999999999999999999999999     99999999999


Q ss_pred             hhcc
Q 044796          170 KAVK  173 (186)
Q Consensus       170 ~~~~  173 (186)
                      ++++
T Consensus        77 ~~al   80 (115)
T 2kat_A           77 ESGL   80 (115)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.43  E-value=2.3e-12  Score=97.24  Aligned_cols=160  Identities=15%  Similarity=-0.005  Sum_probs=91.2

Q ss_pred             HHHHHHHhHhHHHH----cccHHHHHHHHHHHHhccCCChhhhhccchhhhh-----cCchhHHHhhCCCcchhHHHHHH
Q 044796            5 EANEAKLEGNKLFA----EGKYEEALLQYEVALRVASVPERAESASAPEAKE-----GQSASEKKEVAPAPEMAELRSIC   75 (186)
Q Consensus         5 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   75 (186)
                      .+++++.+|..+..    .+++++|+.+|+++++.  .++.+++.+|.++..     ++.+.+...+.....  ..++.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a  113 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--KGLPQA  113 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHH
Confidence            34566677777766    67777777777777664  456666666665532     233333322221111  113456


Q ss_pred             HHHHHHHHhh----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           76 HSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        76 ~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ++.+|.++..    .+++++|+.+|+++...  .++.+++.+|.++..    .+++++|+.+|+++++.  .++.++..+
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~L  189 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            6666666666    56667777777766654  356666666666665    56666666666666654  356666666


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcc
Q 044796          148 LRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       148 ~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +.++.. |....+++++|+.+|+++.
T Consensus       190 g~~y~~-g~g~~~~~~~A~~~~~~a~  214 (490)
T 2xm6_A          190 GYMYSR-GLGVERNDAISAQWYRKSA  214 (490)
T ss_dssp             HHHHHH-TSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHhc-CCCCCcCHHHHHHHHHHHH
Confidence            655443 1112345555555555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.42  E-value=4e-12  Score=89.76  Aligned_cols=163  Identities=10%  Similarity=-0.040  Sum_probs=122.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccC--CChhhhhccchhh-hhcCchhHHHhhCCCcchhH------HHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVAS--VPERAESASAPEA-KEGQSASEKKEVAPAPEMAE------LRSICH   76 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~   76 (186)
                      ...++.+|.++...|++++|+..+.+++..+|  .+.++....+.++ ..+..+.+.+.+.......+      ......
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            34567899999999999999999999999997  7777777777766 66666777766654433333      222333


Q ss_pred             HHHHHHHhhhc--cHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------CCCChH
Q 044796           77 SNRGICFLKLG--KFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEF----------DPSNNQ  142 (186)
Q Consensus        77 ~~~a~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~  142 (186)
                      ..-|.+.+..|  ++.+|...|+++....|+  .+..+++   ++..+|++++|...++.+++.          +|+++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~  256 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT  256 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence            33454566666  899999999999998887  3344444   899999999999999988876          588999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          143 AKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      +..++..+...     +|+  +|.+++.+++...|+
T Consensus       257 ~LaN~i~l~~~-----lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          257 FLANQITLALM-----QGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHHHHHHHH-----TTC--TTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHH-----hCh--HHHHHHHHHHHhCCC
Confidence            99888876666     554  778888877544443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.41  E-value=4.1e-12  Score=92.37  Aligned_cols=167  Identities=8%  Similarity=0.071  Sum_probs=120.6

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhh------hhccchhh-hhcCchhHHHhh----CCCcch----hH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERA------ESASAPEA-KEGQSASEKKEV----APAPEM----AE   70 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~-~~~~~~~~~~~~----~~~~~~----~~   70 (186)
                      +..+..+|..+...|++++|...+++++.+.|.....      +..+|.+. ..++...+...+    ...+..    .+
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            4567889999999999999999999999987765443      34455554 444544433322    211110    13


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPT-----YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQA  143 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~  143 (186)
                      ....++..+|.++...|++++|+..+++++...|.     ...++..+|.++...|++++|...+++++.+.+.  .+..
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~  212 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD  212 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence            34578888999999999999999999999998664     3567889999999999999999999999987433  2222


Q ss_pred             HHH-----HHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          144 KRT-----ILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       144 ~~~-----l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      +..     .+.++..     .|++++|...+.+++.+.+
T Consensus       213 ~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~a~~~~~  246 (373)
T 1hz4_A          213 WISNANKVRVIYWQM-----TGDKAAAANWLRHTAKPEF  246 (373)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHH-----CCCHHHHHHHHHhCCCCCC
Confidence            221     2222334     8999999999998876543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.40  E-value=6.1e-12  Score=94.91  Aligned_cols=15  Identities=13%  Similarity=-0.048  Sum_probs=6.4

Q ss_pred             hcCHHHHHHHHHHHH
Q 044796          120 LEHFEEAIADMKKIL  134 (186)
Q Consensus       120 ~g~~~~A~~~~~~al  134 (186)
                      .+++++|+.+|+++.
T Consensus       272 ~~d~~~A~~~~~~a~  286 (490)
T 2xm6_A          272 AKEPLKALEWYRKSA  286 (490)
T ss_dssp             SCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            344444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.39  E-value=5.9e-12  Score=80.28  Aligned_cols=108  Identities=20%  Similarity=0.168  Sum_probs=91.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..+..+|.++...|++++|+.++++++.+.+...                           ..+....++..+|.++.
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---------------------------~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---------------------------DRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---------------------------CcHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999876521                           11223578899999999


Q ss_pred             hhccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           85 KLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      ..|++++|+..+++++...+      ....++..+|.++...|++++|+..+++++++...
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998733      23668899999999999999999999999987654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.39  E-value=6.3e-13  Score=99.47  Aligned_cols=164  Identities=13%  Similarity=0.036  Sum_probs=111.3

Q ss_pred             HHHHHHHhHhHHHHcc-----cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc----hhH----HHhhC--------
Q 044796            5 EANEAKLEGNKLFAEG-----KYEEALLQYEVALRVASVPERAESASAPEAKEGQS----ASE----KKEVA--------   63 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----~~~----~~~~~--------   63 (186)
                      .+.+++.+|.++...+     ++++|+.+|+++++.  .++.++..+|.++..+..    ...    .....        
T Consensus        68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~  145 (452)
T 3e4b_A           68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL  145 (452)
T ss_dssp             ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHH
Confidence            3556788888666655     899999999999984  445577766655422111    000    00000        


Q ss_pred             ---------------------CCcchhHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 044796           64 ---------------------PAPEMAELRSICHSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEK  119 (186)
Q Consensus        64 ---------------------~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  119 (186)
                                           ........++.+++.+|.++...|   ++++|+.+|+++.+..|.....++.+|.++..
T Consensus       146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~  225 (452)
T 3e4b_A          146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD  225 (452)
T ss_dssp             HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                                 000000112357888898998888   89999999999999998888888889988876


Q ss_pred             h----cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          120 L----EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       120 ~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      .    +++++|+.+|+++.   |.++.+++.+|.++..-..  .+++++|+.+|+++.++
T Consensus       226 g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          226 ATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE--LGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             GGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG--GCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHC
Confidence            5    68899999999987   8888888888877432111  67777777777777544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.38  E-value=1.1e-11  Score=83.59  Aligned_cols=138  Identities=10%  Similarity=-0.050  Sum_probs=108.1

Q ss_pred             HHHHHHHhHhHHHHcc----cHHHHHHHHHHHHhccCCChhhhhccchhhhh-----cCchhHHHhhCCCcchhH--HHH
Q 044796            5 EANEAKLEGNKLFAEG----KYEEALLQYEVALRVASVPERAESASAPEAKE-----GQSASEKKEVAPAPEMAE--LRS   73 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~   73 (186)
                      .+.+++.+|.++.. +    ++++|+.+|+++.+  +.++.+++.+|.++..     .+...+...+.......+  ..+
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  125 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV  125 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence            46788999999988 7    99999999999965  6788999999988743     344444444333222222  236


Q ss_pred             HHHHHHHHHHhh----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHHhcCCCChHH
Q 044796           74 ICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-E-----HFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        74 ~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      .+++.+|.+|..    .+++++|+.+|+++++. |.++.+++.+|.+|... |     ++++|+.+|+++.+..  ++.+
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A  202 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTG  202 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHH
Confidence            899999999999    88999999999999998 67788999999999864 3     8999999999999875  4455


Q ss_pred             HHHHH
Q 044796          144 KRTIL  148 (186)
Q Consensus       144 ~~~l~  148 (186)
                      ...++
T Consensus       203 ~~~l~  207 (212)
T 3rjv_A          203 CEEFD  207 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.33  E-value=5e-11  Score=85.74  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=103.1

Q ss_pred             HHHHHHhHhHHHHc---ccHHHHHHHHHHHHhccCCChhhhhccchhhhh----c-Cc-------hhHHHhhCCCcchhH
Q 044796            6 ANEAKLEGNKLFAE---GKYEEALLQYEVALRVASVPERAESASAPEAKE----G-QS-------ASEKKEVAPAPEMAE   70 (186)
Q Consensus         6 a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~-~~-------~~~~~~~~~~~~~~~   70 (186)
                      +-.++..|..++..   ..+.+|+.+|+++++++|+++.++..++.....    + ..       ........ .....+
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~-a~~~~~  274 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV-TLPELN  274 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-TCGGGT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH-hcccCC
Confidence            45567778777754   456899999999999999999988876654411    1 00       11111111 112334


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN  141 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  141 (186)
                      ..+.++..+|..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|.+|+.++|..+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            45688888998898899999999999999999985 66888999999999999999999999999999875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.33  E-value=2.4e-11  Score=76.45  Aligned_cols=115  Identities=11%  Similarity=0.033  Sum_probs=91.6

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTK   98 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   98 (186)
                      .+++++|+.+|+++.+..+.                                   .+.  +|.++...+.+++|+.+|++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~-----------------------------------~a~--lg~~y~~g~~~~~A~~~~~~   50 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM-----------------------------------FGC--LSLVSNSQINKQKLFQYLSK   50 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT-----------------------------------THH--HHHHTCTTSCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH-----------------------------------hhh--HHHHHHcCCCHHHHHHHHHH
Confidence            46899999999999988655                                   333  88888888888889999988


Q ss_pred             HHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796           99 ALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus        99 al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      +.+.  .++.+.+++|.++..    .+++++|+.+|+++.+.  .++.+..+++.++.. |....+++++|+.+|+++.+
T Consensus        51 Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           51 ACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA-GKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHH
T ss_pred             HHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHH
Confidence            8876  578888888988888    78889999999998876  678888888876654 33346788888888887754


Q ss_pred             C
Q 044796          175 P  175 (186)
Q Consensus       175 ~  175 (186)
                      .
T Consensus       126 ~  126 (138)
T 1klx_A          126 L  126 (138)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.33  E-value=3.2e-12  Score=75.95  Aligned_cols=67  Identities=18%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          102 LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       102 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..     .|++++|+..|++++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-----LDRTDDAIDTYAQGI   68 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999     999999999999885

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.30  E-value=1.5e-10  Score=85.99  Aligned_cols=123  Identities=14%  Similarity=0.147  Sum_probs=96.1

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +.........+...|+|++|+..++++++.....                         ....++.....+.++|.+|..
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~-------------------------lg~~h~~~~~~~~~L~~~y~~  341 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSER-------------------------LPDINIYQLKVLDCAMDACIN  341 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCC-------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCc-------------------------CCccchHHHHHHHHHHHHHHh
Confidence            3444555566778999999999999999875441                         333445566899999999999


Q ss_pred             hccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChHHH---HHHHH
Q 044796           86 LGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF-----DPSNNQAK---RTILR  149 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~  149 (186)
                      +|+|++|+.++++++.+        +|+-...++++|.++..+|++++|+..+++|+++     .|++|.+.   .+++.
T Consensus       342 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          342 LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            99999999999999976        3445668999999999999999999999999975     56666544   44554


Q ss_pred             HHHH
Q 044796          150 KLKE  153 (186)
Q Consensus       150 ~~~~  153 (186)
                      +...
T Consensus       422 ~~~e  425 (429)
T 3qwp_A          422 CDAN  425 (429)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.27  E-value=2.8e-10  Score=84.46  Aligned_cols=112  Identities=12%  Similarity=-0.028  Sum_probs=89.5

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK   88 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   88 (186)
                      ....+......|+|++|+..|++++++....                         ....++.....+.++|.+|..+|+
T Consensus       301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~-------------------------lg~~Hp~~a~~~~nLa~~y~~~g~  355 (433)
T 3qww_A          301 VIEEFRRAKHYKSPSELLEICELSQEKMSSV-------------------------FEDSNVYMLHMMYQAMGVCLYMQD  355 (433)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTT-------------------------BCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhccCHHHHHHHHHHHHHHhhCc-------------------------cChhchHHHHHHHHHHHHHHhhcC
Confidence            3334444456789999999999999875441                         233344566899999999999999


Q ss_pred             HHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChHHHH
Q 044796           89 FEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF-----DPSNNQAKR  145 (186)
Q Consensus        89 ~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~  145 (186)
                      |++|+.++++++.+        .|+-...+.++|.+|..+|++++|+..|++|+.+     .|++|.+..
T Consensus       356 ~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          356 WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999999999976        4555678999999999999999999999999975     577766543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.27  E-value=6.1e-11  Score=70.92  Aligned_cols=83  Identities=20%  Similarity=0.162  Sum_probs=66.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      +..++.+|..++..|+|..|+..|++|++..+...                          ......+.++..+|.++.+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--------------------------~~~~~~~~i~~~L~~~~~~   58 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------------------------ISTIDKVSVLDYLSYAVYQ   58 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------------------CCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--------------------------CCcccHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999764411                          0011134777888888888


Q ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPTYMKALIRRA  114 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg  114 (186)
                      +|++++|+..++++++++|+++.+..+++
T Consensus        59 ~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           59 QGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            88888888888888888888888877776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.27  E-value=3.3e-10  Score=71.44  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           73 SICHSNRGICFLKLG---KFEESIKECTKALELN-P-TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      ..+.+.+|.++.+.+   +.++++..++.+++.+ | +..+++|.+|..++++|+|++|+++++++++++|++..+....
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            388899999998877   7789999999999998 7 6689999999999999999999999999999999999998876


Q ss_pred             HHHHHH
Q 044796          148 LRKLKE  153 (186)
Q Consensus       148 ~~~~~~  153 (186)
                      ..+-..
T Consensus       112 ~~ie~~  117 (152)
T 1pc2_A          112 RLIDKA  117 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            654444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.25  E-value=2e-10  Score=68.63  Aligned_cols=78  Identities=17%  Similarity=0.081  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELN-------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      ++.-++.+|..++..++|..|+.+++.|++..       +..+.++..+|.++..+|+++.|+..++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34677899999999999999999999999863       35688999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 044796          145 RTILR  149 (186)
Q Consensus       145 ~~l~~  149 (186)
                      .++..
T Consensus        84 ~n~~~   88 (104)
T 2v5f_A           84 GNLKY   88 (104)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            88773

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.24  E-value=8.7e-11  Score=68.66  Aligned_cols=71  Identities=24%  Similarity=0.177  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhhhcc---HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           72 RSICHSNRGICFLKLGK---FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      ++..+..+|.++...++   .++|...+++++..+|+++.+++.+|..++..|+|++|+.+|+++++.+|.++.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            44888889988875555   799999999999999999999999999999999999999999999999999543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.22  E-value=1.1e-11  Score=91.25  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..|..+|..+...|.|++|+.+|.++        ..|..+|.|+.++|++++|++.++++     +++.+|..+..++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            58899999999999999999999976        47788999999999999999999999     367777777666666


Q ss_pred             HH-------------------------HHhhccccccchhhhhcccCCCCc
Q 044796          154 MG-------------------------NSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       154 ~~-------------------------~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                      .|                         ....|++++|+..+++++..++..
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            54                         123788888888888887665443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=4.3e-10  Score=83.12  Aligned_cols=163  Identities=9%  Similarity=0.026  Sum_probs=101.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh------ccchhhh-hcCchhHHHh----hCCC--cchhHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES------ASAPEAK-EGQSASEKKE----VAPA--PEMAEL   71 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~~~~~~~-~~~~~~~~~~----~~~~--~~~~~~   71 (186)
                      ...++..+|..+...|++++|+.++.+++...+....+..      .++.+.. .+..+.+...    +...  ......
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  133 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL  133 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence            3456889999999999999999999999998777543321      1222221 1222221111    1100  011112


Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      ...++..+|.++...|+|++|+..+++++..      .|....++...|.++..+|++++|...+++++...+..+....
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence            3467777778888888888888777777754      3444667777777788888888888888888777665544445


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhc
Q 044796          146 TILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      ..+.++..     .|.+..+...|+.+
T Consensus       214 ~~~~~~~~-----~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          214 TVAELDLM-----SGILHCEDKDYKTA  235 (434)
T ss_dssp             HHHHHHHH-----HHHHTTSSSCHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHHhHHHH
Confidence            55555555     44444444444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.18  E-value=3e-10  Score=93.37  Aligned_cols=94  Identities=12%  Similarity=0.046  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH--
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL--  151 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~--  151 (186)
                      ..+..+|..+...|+|++|+.+|.++        ..|..+|.++.++|++++|++.++++..     ..+|...+.++  
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n-----~~aWkev~~acve 1262 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-----TRTWKEVCFACVD 1262 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----HHHHHHHHHHHhh
Confidence            45667999999999999999999996        4788899999999999999999999943     34443322221  


Q ss_pred             ---------------------HHHHHH--hhccccccchhhhhcccCCCCcc
Q 044796          152 ---------------------KEMGNS--ILGRFGMSTDNFKAVKDPNTGAY  180 (186)
Q Consensus       152 ---------------------~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~  180 (186)
                                           ..++..  ..|.|++|+..++.++..++...
T Consensus      1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred             hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence                                 111111  27899999999998876655443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.17  E-value=6.7e-10  Score=69.77  Aligned_cols=98  Identities=9%  Similarity=-0.025  Sum_probs=84.9

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh----hc
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK----LG   87 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~   87 (186)
                      +|..+...+..++|+.+|+++.+....                                   .+++.+|.+|..    .+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~-----------------------------------~a~~~Lg~~y~~G~g~~~   75 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSG-----------------------------------NGCRFLGDFYENGKYVKK   75 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHCSSSCC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCH-----------------------------------HHHHHHHHHHHcCCCCCc
Confidence            788888888899999999999987433                                   889999999998    89


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ++++|+.+|+++.+.  .++.+.+++|.++..    .+++++|+.+|+++.+..  ++.+...++
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            999999999999987  679999999999999    899999999999999874  455555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.8e-10  Score=84.17  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=105.0

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhcc-----------------chhh-hhcCchhHHHhhCCCcc
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESAS-----------------APEA-KEGQSASEKKEVAPAPE   67 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~   67 (186)
                      +......|..+...|+|++|++.|.++++..|...+.....                 |.++ ..++.+.+...+.....
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45567788999999999999999999999999876644333                 3332 33444444333322222


Q ss_pred             hh------HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           68 MA------ELRSICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        68 ~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ..      .....+...+|.++...|++++|+..+++++...+      ....++..+|.++...|++++|+..+.+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            11      11223445566666667777777777777765432      2355677777777777777777777777777


Q ss_pred             cCCCCh------HHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          136 FDPSNN------QAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       136 ~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ......      +++..++.++..     .|+++.|...+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHK-----LRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHH
Confidence            766664      245555555555     777777777777776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.12  E-value=7.8e-10  Score=91.01  Aligned_cols=121  Identities=12%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             CChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc------------
Q 044796           38 VPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP------------  104 (186)
Q Consensus        38 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------  104 (186)
                      +.+.+|+.+|... ..+..+++..++....     ++..|...|.++.+.|+|++|++++..+.+..+            
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAd-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            3344555555444 3333444444433221     235555566666666666666666655554332            


Q ss_pred             ---------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796          105 ---------------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF  169 (186)
Q Consensus       105 ---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~  169 (186)
                                     .+...+..+|..+...|+|++|..+|.++        ..|..++.++..     +|+++.|++.+
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk-----Lge~q~AIEaa 1244 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-----LGEYQAAVDGA 1244 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH-----hCCHHHHHHHH
Confidence                           12345667899999999999999999986        378888888888     88899999999


Q ss_pred             hhcccCC
Q 044796          170 KAVKDPN  176 (186)
Q Consensus       170 ~~~~~~~  176 (186)
                      +++.++.
T Consensus      1245 rKA~n~~ 1251 (1630)
T 1xi4_A         1245 RKANSTR 1251 (1630)
T ss_pred             HHhCCHH
Confidence            9886553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.11  E-value=4.5e-10  Score=84.64  Aligned_cols=110  Identities=15%  Similarity=0.041  Sum_probs=91.8

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ...+..+.++|.++...|+|++|+.++++++++....                         .+..+|..+..+.++|.+
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-------------------------lG~~Hp~~a~~l~nLa~~  402 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL-------------------------YHHNNAQLGMAVMRAGLT  402 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------------SCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-------------------------cCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999864320                         233445566999999999


Q ss_pred             HhhhccHHHHHHHHHHHHhc-----Ccc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           83 FLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      |..+|++++|+..+++|+.+     .|+   -.....+++.++..++.+++|...|.++.+..
T Consensus       403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999976     344   45667789999999999999999999987643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.08  E-value=7.8e-12  Score=92.11  Aligned_cols=148  Identities=14%  Similarity=0.101  Sum_probs=44.7

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      .+.++.|..+|..+...|++++|++.|.++     +++..+...+... ..+..+++...+.......+ .+.+...++.
T Consensus        29 ~~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~  102 (449)
T 1b89_A           29 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIF  102 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHH
Confidence            456778999999999999999999999764     3455666665544 44555555555444333221 2466778889


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR  161 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  161 (186)
                      +|.+.|++.++.+.++     .| +..+|..+|..+...|.+++|..+|.++        ..|..++.++..     +|+
T Consensus       103 ~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~-----Lg~  163 (449)
T 1b89_A          103 ALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-----LGE  163 (449)
T ss_dssp             ------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHT-----TTC
T ss_pred             HHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH-----hcc
Confidence            9999999999887775     24 3459999999999999999999999987        468889988888     999


Q ss_pred             ccccchhhhhcccC
Q 044796          162 FGMSTDNFKAVKDP  175 (186)
Q Consensus       162 ~~~A~~~~~~~~~~  175 (186)
                      |++|++.+.++.+|
T Consensus       164 yq~AVea~~KA~~~  177 (449)
T 1b89_A          164 YQAAVDGARKANST  177 (449)
T ss_dssp             HHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHcCCc
Confidence            99999999988443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.06  E-value=3.1e-09  Score=73.81  Aligned_cols=81  Identities=9%  Similarity=-0.001  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhh
Q 044796           88 KFEESIKECTKALELNPT--YMKALIRRAEAHEKL-----EHFEEAIADMKKILEFDPSN-NQAKRTILRKLKEMGNSIL  159 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~  159 (186)
                      ...+|...++++++++|+  +..+|..+|.+|...     |+.++|..+|+++++++|+. ..+++.++..+..     .
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~-----~  252 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI-----P  252 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT-----T
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-----h
Confidence            467899999999999999  567999999999995     99999999999999999975 9999998887755     4


Q ss_pred             -ccccccchhhhhcc
Q 044796          160 -GRFGMSTDNFKAVK  173 (186)
Q Consensus       160 -~~~~~A~~~~~~~~  173 (186)
                       ++++.+.+.+++++
T Consensus       253 ~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          253 LNNRAGFDEALDRAL  267 (301)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence             88999999999886

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.02  E-value=8.6e-10  Score=64.40  Aligned_cols=71  Identities=21%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             CcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          103 NPTYMKALIRRAEAHEKLEH---FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       103 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      +|+++..+..+|.+++..++   .++|...+++++.++|+++.++..+|..+..     .|+|++|+.+|++++..++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-----~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-----SFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999986666   7999999999999999999999999999888     99999999999998744443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.98  E-value=4.6e-09  Score=82.08  Aligned_cols=165  Identities=7%  Similarity=-0.060  Sum_probs=122.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHH-HHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcch---------------
Q 044796            6 ANEAKLEGNKLFAEGKYEEAL-LQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEM---------------   68 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------   68 (186)
                      ++.|+..+......|+.++|. ..|++++...|.....|..++... ..++.+.+...+......               
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~  422 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN  422 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence            567888888888888888997 999999999999888777777655 233333332222111110               


Q ss_pred             -------hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCC
Q 044796           69 -------AELRSICHSNRGICFLKLGKFEESIKECTKALEL-NPTYMKALIRRAEAHEKLE-HFEEAIADMKKILEFDPS  139 (186)
Q Consensus        69 -------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~  139 (186)
                             ......+|...+......|..+.|...|.+|++. .+....+|...|.+-...| +++.|...|+++++..|+
T Consensus       423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence                   0013457888888888889999999999999987 4445667777777766665 489999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          140 NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       140 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ++..|..++..+..     .++.+.|...|++++..
T Consensus       503 ~~~~w~~y~~fe~~-----~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          503 DGEYINKYLDFLIY-----VNEESQVKSLFESSIDK  533 (679)
T ss_dssp             CHHHHHHHHHHHHH-----HTCHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence            99988888887777     78888888999888643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.91  E-value=1.5e-08  Score=63.97  Aligned_cols=80  Identities=11%  Similarity=-0.000  Sum_probs=65.2

Q ss_pred             HHHHHHhHhHHHHcc---cHHHHHHHHHHHHhcc-CCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEG---KYEEALLQYEVALRVA-SVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         6 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      .+..|+.|.++.+.+   +.++++..++.+++.+ |.                                .+.++++.+|.
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------------------------~~rd~lY~LAv   79 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------------------------EQRDYVFYLAV   79 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------------------------chHHHHHHHHH
Confidence            567788888888777   6668888888888776 42                                13489999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH  117 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  117 (186)
                      .+.++|+|++|..+++++++++|++..+....-.+-
T Consensus        80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999999999999999999999998877655543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.90  E-value=1.1e-08  Score=72.32  Aligned_cols=136  Identities=9%  Similarity=-0.063  Sum_probs=98.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC----Chhhhhccc--hhh-hhc--CchhHH----HhhCCCcchhH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASV----PERAESASA--PEA-KEG--QSASEK----KEVAPAPEMAE   70 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~--~~~-~~~--~~~~~~----~~~~~~~~~~~   70 (186)
                      ...+.+...+.++...|+.+.|.+.+++..+.+|+    +......++  .+. ..+  +...+.    +.....|... 
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-  212 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-  212 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-
Confidence            35677778889999999999999999999999983    222223332  112 112  333332    2333333211 


Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALEL----------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  140 (186)
                       .+..+.+   ++..+|++++|...++.+++.          +|+++.++.++..+...+|+  +|.+++.++.+.+|++
T Consensus       213 -~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          213 -TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             -HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             -cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence             1233333   899999999999999987776          48899999999999999998  8999999999999999


Q ss_pred             hHHHHH
Q 044796          141 NQAKRT  146 (186)
Q Consensus       141 ~~~~~~  146 (186)
                      +.+...
T Consensus       287 p~i~d~  292 (310)
T 3mv2_B          287 AFIKHH  292 (310)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            987554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.90  E-value=1.2e-08  Score=70.91  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh-----ccHHHHHHH
Q 044796           21 KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL-----GKFEESIKE   95 (186)
Q Consensus        21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~   95 (186)
                      ...+|...++++++++|+..                               ...+|..+|..|...     |+.++|..+
T Consensus       178 ~l~~A~a~lerAleLDP~~~-------------------------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQ-------------------------------EGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHH-------------------------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcc-------------------------------cCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            45788888999999999821                               347889999999884     999999999


Q ss_pred             HHHHHhcCccc-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCC
Q 044796           96 CTKALELNPTY-MKALIRRAEAHEK-LEHFEEAIADMKKILEFDPSN  140 (186)
Q Consensus        96 ~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~  140 (186)
                      |+++++++|+. ..+++.+|..+.. .|++++|...+++++..+|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 599999999999999998874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.86  E-value=8.8e-09  Score=76.52  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=72.3

Q ss_pred             HHhhhccHHHHHHHHHHHHhc-----C---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHH
Q 044796           82 CFLKLGKFEESIKECTKALEL-----N---PTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--------DPSNNQAKR  145 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~-----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~  145 (186)
                      .....|+|++|+..+++++.+     .   |.-...+.++|.+|..+|++++|+.++++++.+        +|+....+.
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            334568899999999999986     3   444567899999999999999999999999975        344456688


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          146 TILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ++|.++..     +|++++|+..|++++
T Consensus       387 nLa~~~~~-----qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          387 KLGRLYMG-----LENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----ccCHHHHHHHHHHHH
Confidence            88988888     999999999998874

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.80  E-value=6.1e-07  Score=54.64  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhhhccHH---HHHHHHHHHHhcC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFE---ESIKECTKALELN-P-TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~---~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .+.+.+|.++.+..+..   ++|..++..+..+ | ..-+.++.+|..++++|+|+.|+.+++..++.+|+|..+.....
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            77888888888776555   4999999999887 6 56789999999999999999999999999999999999877655


Q ss_pred             HH
Q 044796          149 RK  150 (186)
Q Consensus       149 ~~  150 (186)
                      .+
T Consensus       116 ~i  117 (126)
T 1nzn_A          116 LI  117 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.76  E-value=9.9e-08  Score=68.83  Aligned_cols=70  Identities=7%  Similarity=-0.067  Sum_probs=60.4

Q ss_pred             hcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCC
Q 044796          101 ELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       101 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      ..+|.++.++..+|..+...|++++|+..+++++.++|+ ..++..+|.++..     .|++++|++.|.+++..+
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~-----~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM-----KGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHS
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcC
Confidence            456888888888888888899999999999999999975 6677888877777     999999999999996433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.72  E-value=8e-07  Score=67.27  Aligned_cols=160  Identities=14%  Similarity=-0.040  Sum_probs=108.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC-chhHHHhhCCCc------chhHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ-SASEKKEVAPAP------EMAELRSICHSN   78 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~   78 (186)
                      +..|+..+......|+.++|...|++++.. |.....+...+....... ............      ...+....+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            567888888888999999999999999999 998777665544321110 111111111010      011223467888


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      .+......+..+.|...|+++ ...+.....|...|.+-...+ +.+.|...|+.+++..|+++..+...+.....    
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~----  366 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR----  366 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----
Confidence            888888888899999999999 433334567777777766666 69999999999999999988877766665555    


Q ss_pred             hhccccccchhhhhc
Q 044796          158 ILGRFGMSTDNFKAV  172 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~  172 (186)
                       .|+.+.|...|+++
T Consensus       367 -~~~~~~aR~l~er~  380 (493)
T 2uy1_A          367 -IGDEENARALFKRL  380 (493)
T ss_dssp             -HTCHHHHHHHHHHS
T ss_pred             -cCCHHHHHHHHHHH
Confidence             44444555555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.70  E-value=5.8e-08  Score=72.16  Aligned_cols=88  Identities=18%  Similarity=0.113  Sum_probs=72.8

Q ss_pred             HHHhhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHH
Q 044796           81 ICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF-----DPS---NNQAK  144 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~  144 (186)
                      .-+..+|+|++|+..+++++.+        +|.-...+.++|.+|..+|++++|+.++++++.+     .|+   ....+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            4455788999999999999976        3344568899999999999999999999999975     344   45568


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          145 RTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .++|.++..     +|++++|+..|++++
T Consensus       375 ~nLa~~~~~-----~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          375 MKVGKLQLH-----QGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence            888888888     999999999998874

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.68  E-value=7.1e-08  Score=75.48  Aligned_cols=162  Identities=6%  Similarity=-0.109  Sum_probs=116.9

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhcc-----------CC-----------Chhhhhccchhh-hhcCchhHHHhhC
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVA-----------SV-----------PERAESASAPEA-KEGQSASEKKEVA   63 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~   63 (186)
                      ..++..+......|++++|...|++++...           |.           ...+|...+... ..++.+.+...+.
T Consensus       379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456677888888999999999999999853           42           223455555443 3344444443333


Q ss_pred             CCcch-hHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--
Q 044796           64 PAPEM-AELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--  139 (186)
Q Consensus        64 ~~~~~-~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--  139 (186)
                      ..... .+.....|...|.+....+ +++.|...|+++++..|+++..|...+......|+.+.|...|++++...|+  
T Consensus       459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~  538 (679)
T 4e6h_A          459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH  538 (679)
T ss_dssp             HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence            22221 1112366777777776665 4899999999999999999999999999999999999999999999999883  


Q ss_pred             -ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          140 -NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       140 -~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                       ....|......-..     .|..+.+....+++.
T Consensus       539 ~~~~lw~~~~~fE~~-----~G~~~~~~~v~~R~~  568 (679)
T 4e6h_A          539 LLKMIFQKVIFFESK-----VGSLNSVRTLEKRFF  568 (679)
T ss_dssp             HHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence             45667777666666     677777777777664

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.40  E-value=1.5e-05  Score=48.75  Aligned_cols=82  Identities=13%  Similarity=0.016  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           72 RSICHSNRGICFLKLG---KFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      .+.+.+++|.++.+..   +..++|..++..++.+|. .-+.++.+|..++++|+|+.|.++.+.+++..|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            4477777777776654   456899999999999884 578999999999999999999999999999999999987765


Q ss_pred             HHHHHH
Q 044796          148 LRKLKE  153 (186)
Q Consensus       148 ~~~~~~  153 (186)
                      ..+-..
T Consensus       119 ~~Ie~k  124 (134)
T 3o48_A          119 SMVEDK  124 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.38  E-value=1.3e-05  Score=50.95  Aligned_cols=117  Identities=12%  Similarity=0.044  Sum_probs=81.5

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK   88 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   88 (186)
                      ++.-...++..|.|+.|+-....++.+..+++++                        -........+..+|..++..++
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~------------------------~sp~~~~~~l~~ladalf~~~e   78 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPEL------------------------FSPPQKYQLLVYHADSLFHDKE   78 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTS------------------------SCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccc------------------------ccHHHHHHHHHHHHHHHHcccH
Confidence            5666778889999999999999988775442211                        0122245788999999999999


Q ss_pred             HHHHHHHHHHHHhcCc---c----------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           89 FEESIKECTKALELNP---T----------------------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        89 ~~~A~~~~~~al~~~p---~----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      |..|...|+++++...   .                      +.+..+.++.|+..+|++++|+..++..=.. -.++.+
T Consensus        79 yrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kv  157 (167)
T 3ffl_A           79 YRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKI  157 (167)
T ss_dssp             HHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHH
Confidence            9999999999976521   1                      1257778888888888888888876653211 123455


Q ss_pred             HHHHHHH
Q 044796          144 KRTILRK  150 (186)
Q Consensus       144 ~~~l~~~  150 (186)
                      ...||+.
T Consensus       158 nm~LakL  164 (167)
T 3ffl_A          158 NMLLANL  164 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.35  E-value=4.5e-06  Score=50.81  Aligned_cols=98  Identities=10%  Similarity=0.004  Sum_probs=64.8

Q ss_pred             HcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhH-------HHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796           18 AEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASE-------KKEVAPAPEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      .......+...|.+.+..++...++.+.++..+ ......+.       ...+...  .+...-.+.+.+|..+++.|+|
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence            344555666667776666666666666666554 22222111       1112211  0113458999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 044796           90 EESIKECTKALELNPTYMKALIRRAEAH  117 (186)
Q Consensus        90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~  117 (186)
                      ++|..+++..|++.|++..+......+-
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999998877665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.28  E-value=1.7e-05  Score=48.47  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=65.5

Q ss_pred             HHHHHHhHhHHHHccc---HHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGK---YEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +...|+.|.++.+..+   ..+++..++..++..|..                                ..++++.+|..
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------------------------------~Rd~LYyLAvg   87 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------------------------RRECLYYLTIG   87 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------------------------HHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------------------------------hHHHHHHHHHH
Confidence            4677888888887664   457888888888876641                                23899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAH  117 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  117 (186)
                      +.++|+|++|..+.+.++++.|++..+......+-
T Consensus        88 ~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           88 CYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999998877665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.25  E-value=6.6e-05  Score=46.50  Aligned_cols=82  Identities=13%  Similarity=0.009  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796           72 RSICHSNRGICFLKLG---KFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI  147 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  147 (186)
                      .....+++|.++.+..   +-.+++..++..+...| ..-+.+|.+|..++++|+|++|.++.+..++.+|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            4477788888877655   45689999999999888 4578999999999999999999999999999999999887765


Q ss_pred             HHHHHH
Q 044796          148 LRKLKE  153 (186)
Q Consensus       148 ~~~~~~  153 (186)
                      ..+-..
T Consensus       118 ~~Ie~~  123 (144)
T 1y8m_A          118 SMVEDK  123 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.23  E-value=4.2e-05  Score=47.40  Aligned_cols=79  Identities=11%  Similarity=0.007  Sum_probs=65.1

Q ss_pred             HHHHHHhHhHHHHccc---HHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGK---YEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+..|+.|.++.+..+   ..+++..++..+...|..                                .-++.+.+|..
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------------------------------~RdcLYyLAvg   86 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------------------------RRECLYYLTIG   86 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------------------------------hhHHHHHHHHH
Confidence            5677888888887664   457888888888877651                                23789999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEA  116 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  116 (186)
                      +.++|+|++|..+++..|++.|++..+......+
T Consensus        87 ~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           87 CYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999999999999999999998886665544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.23  E-value=0.00012  Score=45.77  Aligned_cols=115  Identities=9%  Similarity=-0.075  Sum_probs=91.9

Q ss_pred             HHHHHHHhHhHHHHcccH------HHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKY------EEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (186)
                      ..+.|+......-..|+.      ++-++.|++|+..-|....                         .........|..
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-------------------------~~wrrYI~LWIr   66 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-------------------------GQNESFARIQVR   66 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-------------------------TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-------------------------ccHHHHHHHHHH
Confidence            457788777777777888      8888999999988776310                         001112367777


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      .|.. ...++.++|...|+.++......+.+|...|..-.++|+...|...+.+++.+.|...+...
T Consensus        67 YA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           67 FAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            7755 56689999999999999988888999999999999999999999999999999998766544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.13  E-value=1e-05  Score=51.50  Aligned_cols=94  Identities=11%  Similarity=0.038  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------C
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM---------KALIRRAEAHEKLEHFEEAIADMKKILEFD------P  138 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p  138 (186)
                      ++++.........|.|+.|+-....++....+++         .++..+|.+++..|+|..|...|+++++..      |
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5566667778889999999999999887644333         378899999999999999999999987542      1


Q ss_pred             -------------------CChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          139 -------------------SNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       139 -------------------~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                                         .+.++.+.++.|+..     ++++++|+..++.+
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~-----l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTV-----LKQDKDAIAILDGI  148 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHH-----TTCHHHHHHHHHTS
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHH-----HCCHHHHHHHHhcC
Confidence                               112688999999999     99999999998875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.97  E-value=5.4e-05  Score=59.77  Aligned_cols=61  Identities=20%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      ...+...+..+..+|+++-|+.+.++|+..-|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4567778888899999999999999999999999999999999999999999999988876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.88  E-value=0.00046  Score=52.26  Aligned_cols=111  Identities=8%  Similarity=-0.135  Sum_probs=83.6

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      ..|...+....+.++.+.|...|.++ . .|..                                ....|...|......
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~--------------------------------~~~v~i~~A~lE~~~  332 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV--------------------------------GPHVFIYCAFIEYYA  332 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC--------------------------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC--------------------------------ChHHHHHHHHHHHHH
Confidence            44556666666677889999999988 3 3330                                114566666666665


Q ss_pred             c-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           87 G-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        87 ~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      + +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++    +.....|......-...|
T Consensus       333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred             CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence            6 5999999999999999999998888888889999999999999998    345667777776666633

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.77  E-value=0.00095  Score=50.67  Aligned_cols=151  Identities=9%  Similarity=-0.010  Sum_probs=103.8

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhcc--CCChhhhhccchhhhhcC---------chhHHHhh------CCCcchhHHHH
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVA--SVPERAESASAPEAKEGQ---------SASEKKEV------APAPEMAELRS   73 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~---------~~~~~~~~------~~~~~~~~~~~   73 (186)
                      ..-..+.+.|++++|+..|++..+..  |+.......+..+...+.         .+.+...+      ...|     +.
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-----d~  105 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-----NE  105 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-----CH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-----CH
Confidence            33356678999999999999987753  432221111111111110         11111111      1122     34


Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTILRK  150 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~  150 (186)
                      ..|..+-..+.+.|++++|...+++....  .| +...|..+-..+.+.|+.++|.+.|.+..+..-. +..++..+..+
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            67888889999999999999999998764  44 5667777888899999999999999999875322 45678888878


Q ss_pred             HHHHHHHhhccccccchhhhhc
Q 044796          151 LKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +..     .|+.++|.+.+++.
T Consensus       185 ~~~-----~g~~d~A~~ll~~M  201 (501)
T 4g26_A          185 SMD-----TKNADKVYKTLQRL  201 (501)
T ss_dssp             HHH-----TTCHHHHHHHHHHH
T ss_pred             Hhh-----CCCHHHHHHHHHHH
Confidence            888     88999999998765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.73  E-value=0.00018  Score=45.05  Aligned_cols=96  Identities=11%  Similarity=0.004  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhhhccH------HHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           72 RSICHSNRGICFLKLGKF------EESIKECTKALELNPT--------YMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +++.|........+.|+.      ++-+..|++|+..-|.        +...|...|.. ...++.+.|.+.|+.++.++
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            347777777777777887      8888999999987654        35677777855 67799999999999999998


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          138 PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       138 p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ...+.+|...++.-..     +|....|...+.+++
T Consensus        91 KkFAKiwi~~AqFEiR-----qgnl~kARkILg~Ai  121 (161)
T 4h7y_A           91 KKFAFVHISFAQFELS-----QGNVKKSKQLLQKAV  121 (161)
T ss_dssp             TTBHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHh
Confidence            8888888888887777     777777777776665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.67  E-value=0.0037  Score=45.87  Aligned_cols=118  Identities=16%  Similarity=0.117  Sum_probs=84.1

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL   86 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   86 (186)
                      +.+...|......|+.+.|...+.+++.+.....-.-  ...      .......   ..........+...++..+...
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~~------~~w~~~~---r~~l~~~~~~a~~~~~~~~l~~  184 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--LRD------FQFVEPF---ATALVEDKVLAHTAKAEAEIAC  184 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GTT------STTHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CCc------hhHHHHH---HHHHHHHHHHHHHHHHHHHHHC
Confidence            4455556666677899999999999999864422110  000      0000000   0001111235666778888999


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      |++.+|+..+..++..+|.+..++..+-.++...|+..+|+..|+++..
T Consensus       185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.61  E-value=0.00079  Score=50.89  Aligned_cols=80  Identities=11%  Similarity=0.003  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      .++..+|.+......+..|..+|.+|..+.|++..+++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999888889999998877665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.21  E-value=0.021  Score=41.90  Aligned_cols=100  Identities=15%  Similarity=0.007  Sum_probs=76.2

Q ss_pred             HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796           11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE   90 (186)
Q Consensus        11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (186)
                      .+|..++..|+|.+|.+.+.+.++.-....                           .......++.....+|...+++.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---------------------------d~~~llev~lle~~~~~~~~n~~  156 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLD---------------------------DKNLLVEVQLLESKTYHALSNLP  156 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---------------------------CTHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccc---------------------------cchhHHHHHHHHHHHHHHhccHH
Confidence            689999999999999999999887554411                           11223477888889999999999


Q ss_pred             HHHHHHHHHHhcCc---cc----HHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcC
Q 044796           91 ESIKECTKALELNP---TY----MKALIRRAEAHE-KLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        91 ~A~~~~~~al~~~p---~~----~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~  137 (186)
                      ++...+.++.....   .+    +.....-|..+. ..++|..|...|-.+.+-.
T Consensus       157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            99999998876521   12    334555688888 8999999999999997543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.90  E-value=0.0092  Score=45.19  Aligned_cols=42  Identities=12%  Similarity=-0.070  Sum_probs=33.6

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchh
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPE   49 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~   49 (186)
                      -+..+|........+..|..+|.+|+.+.|++..++..+|.+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavl  195 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL  195 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence            466789888889999999999999999999965444444443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.84  E-value=0.041  Score=35.36  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh--c---------------CcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE--L---------------NPTYMK-ALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ...+..+.|+.+.++|.+|+.+++..++  .               +|.+.+ .+..+|.++...|+.++|+.+|.....
T Consensus        63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A           63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            5667788999999999999999999993  2               233333 566789999999999999999999998


Q ss_pred             cCCCChHHH
Q 044796          136 FDPSNNQAK  144 (186)
Q Consensus       136 ~~p~~~~~~  144 (186)
                      ..|-.+.+-
T Consensus       143 ~~~lf~~vE  151 (242)
T 3kae_A          143 KSFLFSPVE  151 (242)
T ss_dssp             HCCCHHHHH
T ss_pred             CccccchHH
Confidence            888655443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.82  E-value=0.056  Score=37.33  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796           14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI   93 (186)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   93 (186)
                      ..+++.|..++|+......++.+|.+.                                 .....+-..+.-.|+|+.|.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da---------------------------------~~R~~LfqLLcv~G~w~RA~   51 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDA---------------------------------SLRSSFIELLCIDGDFERAD   51 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCH---------------------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCH---------------------------------HHHHHHHHHHHhcCCHHHHH
Confidence            356789999999999999999999943                                 55566677788889999999


Q ss_pred             HHHHHHHhcCcccHH
Q 044796           94 KECTKALELNPTYMK  108 (186)
Q Consensus        94 ~~~~~al~~~p~~~~  108 (186)
                      ..++.+.+++|....
T Consensus        52 ~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A           52 EQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHhCchhhH
Confidence            999999999998643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.77  E-value=0.021  Score=39.38  Aligned_cols=62  Identities=15%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      ..++.|+.++|+......++.+|.+......+-..+.-.|+++.|...++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            45678999999999999999999999999999999999999999999999999999987544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.047  Score=40.57  Aligned_cols=102  Identities=10%  Similarity=-0.148  Sum_probs=78.4

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .+..+|..++..|+++.|.++|.++.......                          ..    ...++.....++...+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--------------------------~~----kid~~l~~irl~l~~~  182 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--------------------------GA----KIDVMLTIARLGFFYN  182 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--------------------------CS----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--------------------------HH----HHHHHHHHHHHHHHhc
Confidence            46678999999999999999999988766551                          11    2377888888888999


Q ss_pred             cHHHHHHHHHHHHhcC--ccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           88 KFEESIKECTKALELN--PTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~--p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      +|..+...++++....  ..+    .......|..+...++|..|...|..+..-...
T Consensus       183 d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          183 DQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            9999999999987542  112    234445678888999999999999988765443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.60  E-value=0.066  Score=34.45  Aligned_cols=88  Identities=19%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHh--cc--CCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALR--VA--SVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSN   78 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (186)
                      +..+...+-.+.|+...+++..|+.+++..+.  .+  |+ .++               ....+-..+..   ..-.+..
T Consensus        59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~-~d~---------------~~~~ffvd~~D---kEfFy~l  119 (242)
T 3kae_A           59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD-VDA---------------RIQEMFVDPGD---EEFFESL  119 (242)
T ss_dssp             CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC-CCH---------------HHHTTSCCTTC---HHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc-ccc---------------ccceeeeccch---HHHHHHH
Confidence            34566777889999999999999999999994  32  33 111               11111112221   2256677


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKA  109 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  109 (186)
                      +|..+.+.|+-++|+.++.......|-.+.+
T Consensus       120 ~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          120 LGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            8999999999999999999999988765443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.60  E-value=0.033  Score=40.82  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcc----------c------------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPT----------Y------------MKALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------~------------~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      ....|......|+.+.|...+.+|+.+...          .            ..+...++.++...|++.+++..+..+
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            334444455568888999999999887321          0            124445677888999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          134 LEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       134 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +..+|-+-.++..+-.++..     .|+..+|++.|...
T Consensus       198 ~~~~P~~E~~~~~lm~al~~-----~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYL-----SDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHT-----TTCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence            99999999999999999888     77777888877654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.54  E-value=0.17  Score=38.44  Aligned_cols=76  Identities=9%  Similarity=0.072  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTILR  149 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~  149 (186)
                      ..|..+-..+.+.|+.++|...|++..+.  .| +...|..+-.++.+.|+.++|.+.+++..+.  .|+ ..++..+..
T Consensus       141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~  218 (501)
T 4g26_A          141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEE  218 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred             ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence            67777888889999999999999998865  44 4567788888899999999999999998764  454 334444444


Q ss_pred             HH
Q 044796          150 KL  151 (186)
Q Consensus       150 ~~  151 (186)
                      .+
T Consensus       219 ~F  220 (501)
T 4g26_A          219 WF  220 (501)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.018  Score=45.85  Aligned_cols=80  Identities=11%  Similarity=0.030  Sum_probs=62.2

Q ss_pred             cHHHHHHHHHHHHhc--------Ccc----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           88 KFEESIKECTKALEL--------NPT----------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        88 ~~~~A~~~~~~al~~--------~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      +--+|++...++++.        .+.          ....+..-+..+...|+++-|+.+-++++...|....+|..|+.
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~  379 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR  379 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            345678877777742        111          12244445777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhc
Q 044796          150 KLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       150 ~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +|..     +|+|+.|.-.+.-+
T Consensus       380 vYi~-----l~d~e~ALLtLNSc  397 (754)
T 4gns_B          380 CHIK-----KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHH-----TTCHHHHHHHHHHS
T ss_pred             HHHH-----hccHHHHHHHHhcC
Confidence            9999     88888887766554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.18  Score=37.63  Aligned_cols=106  Identities=14%  Similarity=0.009  Sum_probs=79.1

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+.....++..+...|++.+|...+.......-.                           ..........+......+
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---------------------------~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---------------------------SMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---------------------------SSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---------------------------cccHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999987643221                           001112347778888999


Q ss_pred             hhhccHHHHHHHHHHHHh---cCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           84 LKLGKFEESIKECTKALE---LNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~---~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      ...+++.+|...++++..   ..+..    ...+...|..+...++|.+|..+|..+...
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            999999999999998743   12222    245667788899999999999999988764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.41  E-value=0.032  Score=40.96  Aligned_cols=165  Identities=12%  Similarity=0.046  Sum_probs=98.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccc---h--hh-h-hcCc----hhHHHhhCCCcchhHH--
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA---P--EA-K-EGQS----ASEKKEVAPAPEMAEL--   71 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---~--~~-~-~~~~----~~~~~~~~~~~~~~~~--   71 (186)
                      +-.+...+|..+...|+.++-.+++.......+.-+.+...-.   .  .. . .+..    +.....+.........  
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999998888876555544443322211   0  00 0 0111    1111111111111100  


Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----C--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCChH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALEL----N--PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD---PSNNQ  142 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~  142 (186)
                      .-..-..+|..|+..|+|.+|...+.+.++.    +  ..-.+++.....++..+|++..+...+.++....   +.+|.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence            1123347899999999999999999988864    1  1225677777888999999999999999997653   12232


Q ss_pred             HHHHHHHHHHHHH--HH-hhccccccchhhhhc
Q 044796          143 AKRTILRKLKEMG--NS-ILGRFGMSTDNFKAV  172 (186)
Q Consensus       143 ~~~~l~~~~~~~~--~~-~~~~~~~A~~~~~~~  172 (186)
                      ..   |.+...-|  .. ..++|..|...|-.+
T Consensus       178 i~---a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          178 VQ---GALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HH---HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HH---HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence            22   22222222  22 267777777776444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.033  Score=36.01  Aligned_cols=45  Identities=11%  Similarity=0.013  Sum_probs=30.3

Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL  134 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (186)
                      ..|+++.|....+..     ++...|..+|......|+++-|..+|.++-
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            557777776666543     456677777777777777777777776653

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.67  E-value=0.3  Score=38.14  Aligned_cols=57  Identities=11%  Similarity=-0.113  Sum_probs=46.6

Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ++...+..|+++.|..++++.-...+..+.+.|.+|.++..+|+.++|...|.++..
T Consensus       291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            333455679999999999876654446688899999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.65  E-value=0.12  Score=41.06  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKA   99 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~a   99 (186)
                      ...|..+|..+.+.++++.|+.+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            378999999999999999999999985

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.25  E-value=0.15  Score=38.68  Aligned_cols=69  Identities=12%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPT-------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      .+..+..+-..|...+.+++|.....++.  .|.       ....++.+|.++.-.++|.+|.+++..|+...|.+..
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            45777888899999999999999999985  332       1456777899999999999999999999998886543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.62  E-value=0.83  Score=36.31  Aligned_cols=27  Identities=11%  Similarity=0.115  Sum_probs=18.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVA   32 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~a   32 (186)
                      ...|..+|..+.+.++++.|+.+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            455667777777777777777777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.11  E-value=0.39  Score=39.79  Aligned_cols=92  Identities=8%  Similarity=-0.059  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE-----LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRT  146 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  146 (186)
                      ..+..+-..+.+.|+.++|...|....+     ..| +...|.-+-..+.+.|+.++|.+.|++..+.  .|+ ..++..
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYnt  205 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHH
Confidence            4677788899999999999999976443     345 5668888888999999999999999999875  454 556776


Q ss_pred             HHHHHHHHHHHhhccc-cccchhhhhc
Q 044796          147 ILRKLKEMGNSILGRF-GMSTDNFKAV  172 (186)
Q Consensus       147 l~~~~~~~~~~~~~~~-~~A~~~~~~~  172 (186)
                      +..++..     .|+. +.|.+.|+..
T Consensus       206 LI~glcK-----~G~~~e~A~~Ll~EM  227 (1134)
T 3spa_A          206 ALQCMGR-----QDQDAGTIERCLEQM  227 (1134)
T ss_dssp             HHHHHHH-----HTCCHHHHHHHHHHH
T ss_pred             HHHHHHh-----CCCcHHHHHHHHHHH
Confidence            6666666     5554 4566666544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.97  E-value=0.56  Score=30.27  Aligned_cols=60  Identities=8%  Similarity=-0.177  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCc--------ccHHHH-------------HHHHHHHHHhcCHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNP--------TYMKAL-------------IRRAEAHEKLEHFEEAIADMKK  132 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~-------------~~lg~~~~~~g~~~~A~~~~~~  132 (186)
                      ..|..+|......|+++-|..+|.++-....        .+.+-+             .....++..+|+++++++.|.+
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7888888888888888888888877433211        111111             1223456677888888887765


Q ss_pred             H
Q 044796          133 I  133 (186)
Q Consensus       133 a  133 (186)
                      .
T Consensus       115 ~  115 (177)
T 3mkq_B          115 G  115 (177)
T ss_dssp             T
T ss_pred             C
Confidence            5

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.84  E-value=0.31  Score=40.95  Aligned_cols=93  Identities=8%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc---C--------------------cccHHHHHHHHHHHHHhcCHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL---N--------------------PTYMKALIRRAEAHEKLEHFEEAIADM  130 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (186)
                      ...+.+|.++...|++++|..+|.++-.-   +                    ...+..|+....++...|.++.+++.-
T Consensus       843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45688999999999999999999886321   0                    112345677788899999999999999


Q ss_pred             HHHHhcCCCChH-----HHHHHHHHHHHHHHHhhccccccchhhhh
Q 044796          131 KKILEFDPSNNQ-----AKRTILRKLKEMGNSILGRFGMSTDNFKA  171 (186)
Q Consensus       131 ~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~A~~~~~~  171 (186)
                      +.|++..+.+..     .|..+-.....     .++|++|-..+-.
T Consensus       923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~-----l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          923 LLADASKETDDEDLSIAITHETLKTACA-----AGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHHH-----HCCSGGGGHHHHH
T ss_pred             HHHHHhccCCChhhHHHHHHHHHHHHHh-----hCCHHHHHHHHHh
Confidence            999987654332     34444444444     8899988777644

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.45  E-value=3  Score=34.89  Aligned_cols=95  Identities=6%  Similarity=-0.088  Sum_probs=74.3

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHh-----ccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALR-----VASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      .+..+-..+.+.|+.++|...|.+.-+     ..|+                                  ...|..+-..
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----------------------------------vvTYNtLI~G  174 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----------------------------------LDMYNAVMLG  174 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----------------------------------HhHHHHHHHH
Confidence            356667788999999999999976443     3444                                  2678888889


Q ss_pred             HhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcC
Q 044796           83 FLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEH-FEEAIADMKKILEFD  137 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~  137 (186)
                      +.+.|++++|...|++-.+.  .| +...|..+-.++.+.|+ .++|.+.|++..+..
T Consensus       175 lck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          175 WARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            99999999999999998764  46 45566666667888887 578999999998754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.45  E-value=0.14  Score=42.93  Aligned_cols=115  Identities=8%  Similarity=-0.060  Sum_probs=72.8

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK   88 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   88 (186)
                      .+.+|.+++..|++++|..+|.++-.........   .....   .............    ..+..|......+.+.+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l---~~~~~---~~~~~~~~~~~~~----~l~~YY~hv~~LFe~~~~  914 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ---FAVLR---EFQEIAEKYHHQN----LLSCYYLHLSKKLFEESA  914 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS---CSSHH---HHHHHHHTTTSCC----SSHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh---hhhhc---ccccccccccccc----cHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999864321111000   00000   0000001111111    123567777888888999


Q ss_pred             HHHHHHHHHHHHhcCc-ccH----HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796           89 FEESIKECTKALELNP-TYM----KALIRRAEAHEKLEHFEEAIADMKKI  133 (186)
Q Consensus        89 ~~~A~~~~~~al~~~p-~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (186)
                      ++.+++..+.|++..+ ++.    ..|.++=.....+|+|++|...+...
T Consensus       915 ~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          915 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9999999999998643 332    25666667788999999998777543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.33  E-value=0.43  Score=35.43  Aligned_cols=98  Identities=8%  Similarity=0.041  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CChHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP--SNNQAKRTIL  148 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~  148 (186)
                      .++..+|..+...|++++|...+.++.....   .-...+...-.++...+++..+...+.++..+..  .++.....+ 
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l-  210 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY-  210 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH-
Confidence            4677899999999999999999999886532   3367778888888999999999999999976532  233333222 


Q ss_pred             HHHHHHHHHhhccccccchhhhhc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      .++..+.....++|..|...|-.+
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~  234 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDS  234 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHH
Confidence            222222223467777777776544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.90  E-value=0.76  Score=35.94  Aligned_cols=132  Identities=11%  Similarity=-0.074  Sum_probs=72.8

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG   87 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   87 (186)
                      .....+...+...+.+.|...+.......+-...                             .....+..+|......+
T Consensus       216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ia~~~~~~~  266 (618)
T 1qsa_A          216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNED-----------------------------QIQELRDIVAWRLMGND  266 (618)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH-----------------------------HHHHHHHHHHHTSCSTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHH-----------------------------HHHHHHHHHHHHHHHcC
Confidence            3445555556666778888888776543322110                             01133334444444555


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccch
Q 044796           88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTD  167 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~  167 (186)
                      ...++...+.+.....+++.......+.++ ..|+++.|...|.+.-.-.+..+...+.+|+++..     .|+.++|..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-----~g~~~~a~~  340 (618)
T 1qsa_A          267 VTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-----RGREAEAKE  340 (618)
T ss_dssp             CCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred             CChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-----cCCHHHHHH
Confidence            345566666665544443333333334433 45788887777766554333456667777777777     555556666


Q ss_pred             hhhhccc
Q 044796          168 NFKAVKD  174 (186)
Q Consensus       168 ~~~~~~~  174 (186)
                      .|+.+..
T Consensus       341 ~~~~~a~  347 (618)
T 1qsa_A          341 ILHQLMQ  347 (618)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            6655543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.58  E-value=2.3  Score=31.76  Aligned_cols=72  Identities=11%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHh-ccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALR-VASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ...+.+......++..+++.+|...+.++.. ..+.                           +.........+...|..
T Consensus       175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~---------------------------~~~~~lk~~~~~~~~~~  227 (445)
T 4b4t_P          175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN---------------------------PKYESLKLEYYNLLVKI  227 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---------------------------SCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---------------------------CCcHHHHHHHHHHHHHH
Confidence            4567788888899999999999999998743 2211                           11112344677888999


Q ss_pred             HhhhccHHHHHHHHHHHHhc
Q 044796           83 FLKLGKFEESIKECTKALEL  102 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~  102 (186)
                      +...++|.+|-.+|..+...
T Consensus       228 ~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          228 SLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhc
Confidence            99999999999999998864

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.48  E-value=2  Score=32.79  Aligned_cols=74  Identities=9%  Similarity=-0.063  Sum_probs=55.7

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ++..+..+-..|+..+.+++|.....++.  .|...                          .........++..|.++.
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~--------------------------~sn~q~~rY~YY~GRI~a  281 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD--------------------------VSSSLEARYFFYLSKINA  281 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT--------------------------SCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc--------------------------CCHHHHHHHHHHHHHHHH
Confidence            45666777778888899999999988864  55411                          111123477888999999


Q ss_pred             hhccHHHHHHHHHHHHhcCccc
Q 044796           85 KLGKFEESIKECTKALELNPTY  106 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~  106 (186)
                      .+++|.+|..++..|+...|.+
T Consensus       282 ~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          282 IQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HhccHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999876643

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=91.46  E-value=0.48  Score=26.41  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=28.5

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      ++.|-.+...|...=..|++++|+.+|..+++.
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356777888898889999999999999999875

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=91.09  E-value=0.62  Score=26.35  Aligned_cols=33  Identities=36%  Similarity=0.445  Sum_probs=27.8

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      +..|..+-.++..+...|+|++||++.+++...
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~y   44 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTY   44 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            456777788999999999999999998887754

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=90.70  E-value=0.6  Score=25.26  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=28.9

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChh
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPER   41 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~   41 (186)
                      -..+|..+...|++++|..+|-+|+...|+..+
T Consensus        20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            356899999999999999999999999998443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=90.62  E-value=1.8  Score=28.56  Aligned_cols=53  Identities=17%  Similarity=0.043  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHH-----HHHHHHHHHHHhcCHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK-----ALIRRAEAHEKLEHFE  124 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~lg~~~~~~g~~~  124 (186)
                      .....+.+|.+++..++|.+|...+..|+..-|....     ++..+-.+-.-+|+..
T Consensus        13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP   70 (203)
T 3t5x_A           13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP   70 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3467788999999999999999999999988775432     2333334445567653

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.59  E-value=0.64  Score=25.88  Aligned_cols=33  Identities=30%  Similarity=0.317  Sum_probs=28.4

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      ++.|-.+...|...=..|++++|+.+|..+++.
T Consensus         8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356777888898888999999999999998875

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.37  E-value=2.1  Score=26.58  Aligned_cols=121  Identities=13%  Similarity=0.037  Sum_probs=71.8

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccch------------------hh---hhcCchhHHHhhCCCcchhH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAP------------------EA---KEGQSASEKKEVAPAPEMAE   70 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~   70 (186)
                      -|...+-.|..++.++...+.....|....-|.-.-.                  ++   .-+...............  
T Consensus        13 eAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~--   90 (172)
T 1wy6_A           13 DAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL--   90 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC--
T ss_pred             HHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch--
Confidence            3556677899999999999988877765544442211                  11   001111111111101100  


Q ss_pred             HHHHHHHHHHH-HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           71 LRSICHSNRGI-CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        71 ~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                         .-+..+|. ....+|+-++-...+...+..++-+|..++.+|.+|.+.|+..+|-+.+.+|.+..
T Consensus        91 ---se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           91 ---NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             ---CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence               12333443 23345666666666666566667779999999999999999999999999998643

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=88.88  E-value=3.2  Score=31.14  Aligned_cols=64  Identities=2%  Similarity=-0.124  Sum_probs=49.1

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCC
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNP----------TYMKALIRRAEAHEKLEHFEEAIADMKKILEF-DPSN  140 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~  140 (186)
                      ..+-.+|++.++...+...++..-...+          .....+|.+|..+...++|.+|.+.+..|+.. .|.+
T Consensus       180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            3455888999998888777755433221          12457888999999999999999999999998 7754

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=88.80  E-value=1.8  Score=23.44  Aligned_cols=31  Identities=10%  Similarity=0.148  Sum_probs=20.4

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796          112 RRAEAHEKLEHFEEAIADMKKILEFDPSNNQ  142 (186)
Q Consensus       112 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  142 (186)
                      .+|..+...|++++|..+|-+|+.+.|.-..
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            4566666777777777777777776665443

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=88.62  E-value=1.1  Score=25.00  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      +..+..+...|...-..|++++|+.+|..+++.
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467778888898888999999999999999875

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=88.44  E-value=1.1  Score=25.51  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=28.4

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      ++.|-.+...|...-..|+|++|+.+|..+++.
T Consensus        12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356777888998899999999999999998875

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.29  E-value=1.5  Score=24.59  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      .+..+...|...-..|++++|+.+|..+++.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4666778888888999999999999999875

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=86.60  E-value=1.3  Score=26.39  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      +..|..+...|...-..|+|++|+.+|..+++.
T Consensus        15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            466777888888888899999999999999875

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=86.34  E-value=3.4  Score=32.60  Aligned_cols=50  Identities=16%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796          108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      ......|...+..|+|.-|.+....++..+|+|..++..++.++.++|..
T Consensus       450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~  499 (658)
T 2cfu_A          450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  499 (658)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence            44566788888999999999999999999999999999999999998875

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=86.25  E-value=0.97  Score=25.83  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=27.9

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVP   39 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   39 (186)
                      -..+|..+...|+++.|+.+|-+|+...|+.
T Consensus        23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP   53 (95)
T 1om2_A           23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP   53 (95)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            3568999999999999999999999999984

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=84.62  E-value=2.2  Score=24.15  Aligned_cols=29  Identities=34%  Similarity=0.355  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      +..+-.++..+...|+|++||.+.+++..
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            46677788999999999999988887664

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.58  E-value=12  Score=31.06  Aligned_cols=69  Identities=7%  Similarity=-0.002  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh-cCc----------------------ccHHHHHHHHHHHHHhcCHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE-LNP----------------------TYMKALIRRAEAHEKLEHFEEAIADM  130 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (186)
                      ..-+.+|.++...|++++|..+|++|-. +.+                      .....|.....++...+-++-++..-
T Consensus       841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA  920 (950)
T 4gq2_M          841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  920 (950)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4457788888888888888888887542 100                      01235667777888888888888888


Q ss_pred             HHHHhc-CCCChH
Q 044796          131 KKILEF-DPSNNQ  142 (186)
Q Consensus       131 ~~al~~-~p~~~~  142 (186)
                      +.|++. .++++.
T Consensus       921 ~lAI~~~~~dd~~  933 (950)
T 4gq2_M          921 LLADASKETDDED  933 (950)
T ss_dssp             HHHHHTCCSCCHH
T ss_pred             HHHHhhcccCCcc
Confidence            888864 344443

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=83.29  E-value=6.6  Score=24.85  Aligned_cols=70  Identities=13%  Similarity=0.145  Sum_probs=49.1

Q ss_pred             HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHH-HHHHHHHhhh
Q 044796            8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICH-SNRGICFLKL   86 (186)
Q Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~   86 (186)
                      .-+..|..++..|+|-+|-+.++.+-...+...                         ....-...-+. ...|..+...
T Consensus        34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~-------------------------~er~~lqGLIQ~lAvAl~H~~r   88 (161)
T 2ijq_A           34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGN-------------------------TESKFLHGMVQVAAGAYKHFDF   88 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSS-------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCc-------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            446678889999999999999999888766520                         00111122344 4456677778


Q ss_pred             ccHHHHHHHHHHHHhc
Q 044796           87 GKFEESIKECTKALEL  102 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~  102 (186)
                      |+..-|...+.+++..
T Consensus        89 gN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           89 EDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998863

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=81.95  E-value=2.9  Score=23.87  Aligned_cols=28  Identities=21%  Similarity=0.339  Sum_probs=14.8

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCc
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNP  104 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p  104 (186)
                      ..+|..+...|+++.|+.+|-+|+...|
T Consensus        24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~   51 (95)
T 1om2_A           24 IQLGEELLAQGDYEKGVDHLTNAIAVCG   51 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence            3455555555555555555555555433

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=81.56  E-value=5.5  Score=26.23  Aligned_cols=37  Identities=11%  Similarity=-0.046  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796          107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      ....+.+|.++...++|.+|...+..|+...|.+...
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~   50 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK   50 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence            4466778888888888888888888888887766543

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=80.65  E-value=5.9  Score=22.51  Aligned_cols=63  Identities=21%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF   89 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   89 (186)
                      +..|..++..|+|-+|-+.++..-...|..                           ...-...-+...-|..+...|+.
T Consensus         5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~---------------------------~~~~~qGLIq~Ava~~h~~~gn~   57 (94)
T 2cwy_A            5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGE---------------------------ERRLLQGVILLAAALHQRRLGRP   57 (94)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCHH---------------------------HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhhCCCc---------------------------hHHHHHHHHHHHHHHHHHHcCcH
Confidence            456778888899999999999888776541                           11111223444455566667777


Q ss_pred             HHHHHHHHHHHh
Q 044796           90 EESIKECTKALE  101 (186)
Q Consensus        90 ~~A~~~~~~al~  101 (186)
                        |...+.+++.
T Consensus        58 --a~~ll~~a~~   67 (94)
T 2cwy_A           58 --GLRNLRKAEA   67 (94)
T ss_dssp             --CHHHHHHHHH
T ss_pred             --HHHHHHHHHH
Confidence              8788888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-10
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	9e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	9e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	8e-08
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	6e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	6e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	8e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 1e-15
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 5/147 (3%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASA---PEAKEGQSASEKKEVAPAPEMA 69
               + +G  + A+  Y  A+ +   P   ++         ++G  A  +     A  + 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 70  ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAD 129
              +   +N      + G  EE+++   KALE+ P +  A    A   ++    +EA+  
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 130 MKKILEFDPSNNQAKRTILRKLKEMGN 156
            K+ +   P+   A   +   LKEM +
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA---PEAKEGQSASEKK 60
           N A      G    A+G+   A+  +E A+ +   P   ++         +         
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVA 224

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
               A  ++   ++ H N    + + G  + +I    +A+EL P +  A    A A ++ 
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
               EA       L   P++  +   +    +E GN
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 9e-10
 Identities = 9/66 (13%), Positives = 22/66 (33%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
                  + G FE + + C +     P     L+  +  H +    + +       ++ +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 138 PSNNQA 143
           P   +A
Sbjct: 64  PLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 33/111 (29%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELR 72
            ++ +  G +E A        R    P+                                
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQE--PDNTGV---------------------------- 35

Query: 73  SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123
                       +  + + S    T A++ NP   +A       +++    
Sbjct: 36  ---LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           K L  + + K  GN  F    +E A+ +Y                     +  + +    
Sbjct: 22  KILLISEDLKNIGNTFFKSQNWEMAIKKYTKV-----------------LRYVEGSRAAA 64

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
           E A   ++  +   C  N G C LK+  ++ ++  C +ALE++P+  KAL RRA+  + L
Sbjct: 65  EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL 124

Query: 121 EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
           + +++A+AD+KK  E  P +   +  +L+  +++  
Sbjct: 125 KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 53.1 bits (126), Expect = 6e-10
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           +  A + K EGN+ F + +  EA+++Y+                           E  + 
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYK-----------------EALDFFIHTEEWDDQ 56

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
               +   +   C+ N   C+ K   + ++I   +K L+++   +KAL +   A+     
Sbjct: 57  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 116

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157
            EEA  ++ K    +P+N   + +    + ++  +
Sbjct: 117 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.0 bits (126), Expect = 9e-10
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L +A   K +G   F  GKY +A++QY   +    +        +  ++           
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES---------- 61

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
                          N  +C+LKL ++ ++++ C KAL L+    K L RR EA   +  
Sbjct: 62  --------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 113

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
           FE A  D +K+LE +P N  A+  I    K+   
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 9e-09
 Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 11/159 (6%)

Query: 4   NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA-----PEAKEGQSASE 58
               +A L      A G Y + L +      V         +S       +     +  +
Sbjct: 84  RSEVQANLSLFLEAASGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVK 141

Query: 59  KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
            +  + +         C  + G       +  ++      A +L P+  +   + A    
Sbjct: 142 PQSSSCSYICQH----CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197

Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157
                   I    + +        A   + + L +   S
Sbjct: 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES 236

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 10/135 (7%), Positives = 34/135 (25%), Gaps = 15/135 (11%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-------KEGQSASEKKEVAPA 65
                +    ++    Y+  L      E A      +         +  +   + +    
Sbjct: 27  AEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLWNHAFKNQITTLQGQAKNRAN 81

Query: 66  PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
           P  +E+++   +         G + + ++E      ++        +      K  H   
Sbjct: 82  PNRSEVQA---NLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSA 138

Query: 126 AIADMKKILEFDPSN 140
            +        +   +
Sbjct: 139 IVKPQSSSCSYICQH 153

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 9/118 (7%), Positives = 27/118 (22%), Gaps = 7/118 (5%)

Query: 13  GNKLFAEGKYEEALLQYEVALRVASVP---ERAESASAPEAKEGQSASEKKEVAPAPEMA 69
           G     +      +     +             + A          +  +      P   
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG 186

Query: 70  ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
           +     ++   I     G    +I    +++ +   +  A     +A  K     + +
Sbjct: 187 Q----PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 5/152 (3%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
            A E K +GN+LF   KY EA   Y  A+     P  A   +       +    ++ +A 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 65  APEMAELRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
                EL       H   G C L++  ++E+I    +A  L             +  ++ 
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 122 HFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
             +   +  ++ +  +   +     ++   +E
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERE 152

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 19/79 (24%), Positives = 36/79 (45%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
            +G       K+ E+     +A+  NP        RA  + K++  E+A+AD ++ LE D
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 138 PSNNQAKRTILRKLKEMGN 156
             + +A   + +   EM +
Sbjct: 69  GQSVKAHFFLGQCQLEMES 87

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVAS-VPERAESASAPEAKEGQSASEKKEVA 63
           + NE K +GNK  + G  ++AL  Y  A+++         + SA  AK+G      ++  
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61

Query: 64  PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
              ++       +S +      L +FEE+ +   + L+      +          +
Sbjct: 62  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 3/144 (2%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVAS-VPERAESASAPEAKEGQSASEK 59
            AL  A E K + N  F    YE A+  Y  A+ +         + S    +        
Sbjct: 5   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 64

Query: 60  KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE- 118
            +   A E+ +     +  R    + LGKF  ++++    +++ P    A ++  E ++ 
Sbjct: 65  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 124

Query: 119 -KLEHFEEAIADMKKILEFDPSNN 141
            K + FE AIA  +       S +
Sbjct: 125 VKQKAFERAIAGDEHKRSVVDSLD 148

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 9/60 (15%), Positives = 23/60 (38%)

Query: 84  LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
           L  G+ +++++   +A++ +P          E       FE A   + + ++  P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 33/137 (24%)

Query: 12  EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
           +     +EG+ ++AL     A++ +                             P+ A L
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKAS-----------------------------PKDASL 32

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                S+        G FE + ++  ++++L P Y+    +     +  +  ++      
Sbjct: 33  ----RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 132 KILEFDPSNNQAKRTIL 148
                  +    K  + 
Sbjct: 89  TAKVLGENEELTKSLVS 105

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.6 bits (112), Expect = 8e-08
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 11/126 (8%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L      K  G    A G++E+A      ALR    P   +                   
Sbjct: 8   LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV-----------E 56

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
             A  + E + + H+ +    +  G+    I E       +P       +   A+   + 
Sbjct: 57  PFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR 116

Query: 123 FEEAIA 128
             +A+ 
Sbjct: 117 QSDALG 122

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 47.1 bits (110), Expect = 1e-07
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 32/169 (18%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKK 60
           K +  A  A  +  +    G+Y+EA      A+ ++                        
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS---------------------HTM 42

Query: 61  EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA----------- 109
               A + A   + CH+        L  F+E++    KAL       +            
Sbjct: 43  PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 102

Query: 110 LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI 158
           +  RA A + L    EA+ + KK++E             R ++   + I
Sbjct: 103 VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 151

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 78  NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
             G+  L+ G    ++     A++ +P +M+A         + E    AI+ +++ LE  
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 138 PSNNQ 142
           P N  
Sbjct: 84  PDNQT 88

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 1   KALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVAS---VPERAESASAPEAKEGQSAS 57
                   +K     L ++  + E    +  A+R+      P+            G+   
Sbjct: 131 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 190

Query: 58  EKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH 117
                  A  +     +  +  G       + EE++    +ALEL P Y+++      + 
Sbjct: 191 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 250

Query: 118 EKLEHFEEAIADMKKILEFDPSNNQAK 144
             L    EA+    + L     +   +
Sbjct: 251 INLGAHREAVEHFLEALNMQRKSRGPR 277

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 8e-04
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 75  CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIADMKKI 133
              N GI  + LG   E+++   +AL +               E +      A++ + + 
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301

Query: 134 LEFDPSNNQAKRTILRKL 151
             +  ++ +   T+L   
Sbjct: 302 DAYGAADARDLSTLLTMF 319

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 33/132 (25%)

Query: 12  EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAEL 71
           EG +   EG    A+L +E A++    P+  E+                           
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEA--------------------------- 55

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                   G    +  +   +I    + LEL P    AL+  A +        +A   ++
Sbjct: 56  ----WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 111

Query: 132 KILEFDPSNNQA 143
             L + P+    
Sbjct: 112 DWLRYTPAYAHL 123

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 3   LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV 62
           L ++   K  G   F EGKY++ALLQY+                  +             
Sbjct: 10  LEQSTIVKERGTVYFKEGKYKQALLQYK------------------KIVSWLEYESSFSN 51

Query: 63  APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
             A +   LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  
Sbjct: 52  EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 111

Query: 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157
           FE A AD +K+L+  P+N  AK  +    + +   
Sbjct: 112 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 146

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 36/147 (24%)

Query: 2   ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE 61
           +L EA     EG     +  ++ AL  +                                
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFS------------------------------- 29

Query: 62  VAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
                 + +  S    N G  +  L    E+ K  T+++  +     A  +R   + + E
Sbjct: 30  -----AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84

Query: 122 HFEEAIADMKKILEFDPSNNQAKRTIL 148
            ++ AI D+K+ L     N      IL
Sbjct: 85  KYDLAIKDLKEALIQLRGNQLIDYKIL 111

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 75  CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134
              N    + K  +++++ ++   A  +      + I +A      +   E +      L
Sbjct: 122 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL 181

Query: 135 EFDPSNNQAK 144
            F P+  Q  
Sbjct: 182 -FRPNERQVA 190

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 13/80 (16%), Positives = 22/80 (27%)

Query: 72  RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
                         L    ES KE  +    N   +  +I    A + L + +E +    
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 300

Query: 132 KILEFDPSNNQAKRTILRKL 151
            +   DP        +  K 
Sbjct: 301 TLKAVDPMRAAYLDDLRSKF 320

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 40  ERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKA 99
           +RAE A      +    +   ++  + +  ++    +        +  + E + K    A
Sbjct: 14  DRAEWADIDPVPQNDGPNPVVQIIYSDKFRDV----YDYFRAVLQRDERSERAFKLTRDA 69

Query: 100 LELNPTYMKALIRRAEAHEKLE-HFEEAIADMKKILEFDPSNNQ 142
           +ELN         R    + L+    E +  +  I+E  P N Q
Sbjct: 70  IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 113

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 98  KALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA---KRTILRKLKEM 154
             +  +  +           ++ E  E A    +  +E + +N      +R +L+ L++ 
Sbjct: 34  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 28/151 (18%)

Query: 5   EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP 64
           +A + K  GN  + +  ++ AL  Y+ A  +                             
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDP--------------------------T 36

Query: 65  APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
                  ++  +  +G         E++I+   +  E      KA  R   ++ K E ++
Sbjct: 37  NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96

Query: 125 EAIADMKKILEFDPSNNQAK--RTILRKLKE 153
           +AI    K L    + +  K  +   + LKE
Sbjct: 97  DAIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 19/81 (23%), Positives = 34/81 (41%)

Query: 76  HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135
               G    K   F+ ++K   KA EL+PT M  +  +A  + +   + +     +K +E
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 136 FDPSNNQAKRTILRKLKEMGN 156
               N +  R I +    +GN
Sbjct: 67  VGRENREDYRQIAKAYARIGN 87

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 22/81 (27%)

Query: 75  CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134
                     +    E    + T    L     +      + +  L   + A A  K  +
Sbjct: 177 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

Query: 135 EFDPSNNQAKRTILRKLKEMG 155
             +  N    R  L +L  +G
Sbjct: 237 ANNVHNFVEHRYALLELSLLG 257

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 18/91 (19%), Positives = 36/91 (39%)

Query: 52  EGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALI 111
           E   A  ++ +A      + R+     RG+ +  LG    +  + ++AL + P   +   
Sbjct: 16  EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 75

Query: 112 RRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142
                  +  +F+ A      +LE DP+ N 
Sbjct: 76  YLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 106

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (82), Expect = 6e-04
 Identities = 13/74 (17%), Positives = 25/74 (33%)

Query: 83  FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142
           F ++  FE+  ++     + NP     L R      +L  F       + I E      +
Sbjct: 7   FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 66

Query: 143 AKRTILRKLKEMGN 156
           A     +K + +  
Sbjct: 67  ALLIDPKKDEAVWC 80

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 59  KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEA 116
           + E A        +   ++   +         + I    + L           +   A  
Sbjct: 23  QSEKAAGSVSKSTQ-FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81

Query: 117 HEKLEHFEEAIADMKKILEFDPSNNQA---KRTILRKLK 152
           + +L+ +E+A+  ++ +L+ +P NNQA   +R I + +K
Sbjct: 82  NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 13/114 (11%), Positives = 36/114 (31%), Gaps = 6/114 (5%)

Query: 14  NKLFAEGKYEEALLQYEVALRVASVPERAESASA------PEAKEGQSASEKKEVAPAPE 67
           N+L +     +   +++      SV +  +   A          + +      E      
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 68  MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 121
             E +        +   +L ++E+++K     L+  P   +A        + ++
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.87
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.8
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.75
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.74
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.65
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.55
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.55
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.35
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.29
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.17
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.44
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.31
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.04
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	95.13
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.1
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.44
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	92.02
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	90.08
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.03
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.9
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.23
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	85.2
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	84.93
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	84.87
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	80.05

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-24  Score=129.73  Aligned_cols=114  Identities=29%  Similarity=0.434  Sum_probs=108.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +++.++..|+.++..|++++|+.+|.++|+.+|.                                 ++.+|..+|.++.
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~---------------------------------~~~~~~~~a~~~~   48 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---------------------------------NHVLYSNRSAAYA   48 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------------------------------chhhhhccccccc
Confidence            5678899999999999999999999999999999                                 3389999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus        49 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          49 KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999888653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.9e-23  Score=131.63  Aligned_cols=119  Identities=28%  Similarity=0.461  Sum_probs=112.5

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      .+++|+.+...|+.++..|+|++|+.+|+++++++|+                                 ++.+|.++|.
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~---------------------------------~~~~~~~lg~   52 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---------------------------------NAIYYGNRSL   52 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh---------------------------------hhhhhhhhHH
Confidence            4678999999999999999999999999999999999                                 3389999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ++..+|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|++++.++|+++.++..++.+...
T Consensus        53 ~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          53 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888876544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-23  Score=134.31  Aligned_cols=139  Identities=35%  Similarity=0.516  Sum_probs=118.9

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +++.+..+...|+.++..|+|++|+.+|+++|...|.........                  ..........++.++|.
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~------------------~~~~~~~~~~~~~nla~   70 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE------------------AQKAQALRLASHLNLAM   70 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH------------------HhhhchhHHHHHHHHHH
Confidence            567899999999999999999999999999999988743321110                  01111223467889999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI  158 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  158 (186)
                      ++.++|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...+....
T Consensus        71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-24  Score=151.17  Aligned_cols=174  Identities=9%  Similarity=-0.024  Sum_probs=148.3

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-c-CchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-G-QSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +-++++..+|.++...+.+++|+.+++++|+++|++..+|..+|.+... + +.+.+...+.......|....+|..+|.
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            3467888899999999999999999999999999999999999988643 3 3455555544444444455699999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-hhc
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS-ILG  160 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~  160 (186)
                      ++..+|++++|+..++++++++|++..+|..+|.++..+|++++|+..|+++++++|.+..+|.+++.++..++.. ..+
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988875543 345


Q ss_pred             cccccchhhhhcccCCC
Q 044796          161 RFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       161 ~~~~A~~~~~~~~~~~~  177 (186)
                      .+++|+..+.+++..+|
T Consensus       201 ~~~~ai~~~~~al~~~P  217 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVP  217 (315)
T ss_dssp             HHHHHHHHHHHHHHHST
T ss_pred             hhHHhHHHHHHHHHhCC
Confidence            57788888888853333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=147.23  Aligned_cols=163  Identities=16%  Similarity=0.165  Sum_probs=133.6

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHH----------------------
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKK----------------------   60 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~----------------------   60 (186)
                      +.++++..+|.++...|++++|+.+|.++++++|+++.++..+|.++ ..+....+..                      
T Consensus        51 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  130 (323)
T d1fcha_          51 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG  130 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhh
Confidence            34677888888888888888888888888888888888888777544 2222111110                      


Q ss_pred             -------------------------------hhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHH
Q 044796           61 -------------------------------EVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA  109 (186)
Q Consensus        61 -------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  109 (186)
                                                     ++...|.  ...+.++..+|.++...|++++|+..+++++..+|+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  208 (323)
T d1fcha_         131 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT--SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL  208 (323)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc--ccccccchhhHHHHHHHHHHhhhhcccccccccccccccc
Confidence                                           1111111  0124678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          110 LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      |..+|.++..+|++++|+..|+++++++|+++.++..+|.++..     .|++++|+..|++++
T Consensus       209 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al  267 (323)
T d1fcha_         209 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-----LGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             hhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999     999999999999986

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.89  E-value=3.8e-22  Score=128.93  Aligned_cols=138  Identities=28%  Similarity=0.439  Sum_probs=116.8

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +++.++.+...|+.++..|+|.+|+.+|.+++...|.........                  .....+....++.++|.
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~------------------~~~~~~~~~~~~~Nla~   72 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE------------------SKASESFLLAAFLNLAM   72 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh------------------hhhcchhHHHHHHhHHH
Confidence            467889999999999999999999999999999876632110000                  01112234578889999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      |+..+|++++|+..+++++.++|+++.+++++|.++..+|++++|+..|.++++++|+++.++..++.+...+...
T Consensus        73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887775543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.89  E-value=7.9e-22  Score=125.45  Aligned_cols=136  Identities=21%  Similarity=0.344  Sum_probs=114.6

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +++.+..+...|+.++..|+|.+|+..|.+++...|..........                 .....+....++.++|.
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~Nla~   75 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL-----------------LDKKKNIEISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHH-----------------HHhhhhHHHHHHhhHHH
Confidence            4677889999999999999999999999999998776322110000                 00011223468889999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      ++..+|++++|+..++++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998877664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.7e-23  Score=146.48  Aligned_cols=169  Identities=19%  Similarity=0.131  Sum_probs=132.4

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      .+..+..+|.++...|++++|+..|.+++...|.....+..+|.+. ..++.+.+...+.......|..+.++..+|.++
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  281 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL  281 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4567888888888888888888888888888888888888887766 444444444333222222223347888888888


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG  163 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  163 (186)
                      ...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++++|+++.++..+|.++..     .|+++
T Consensus       282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~  356 (388)
T d1w3ba_         282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-----QGKLQ  356 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-----TTCCH
T ss_pred             HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888     88888


Q ss_pred             ccchhhhhcccCCCC
Q 044796          164 MSTDNFKAVKDPNTG  178 (186)
Q Consensus       164 ~A~~~~~~~~~~~~~  178 (186)
                      +|+.+|++++..+|+
T Consensus       357 ~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         357 EALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            888888888644443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.3e-22  Score=141.92  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=90.3

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      +..+..+|..+...|++++|...+.++++.+|+++.++..+|.+. ..++.+.+...+.......+..+..+..+|.++.
T Consensus       169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (388)
T d1w3ba_         169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence            445555555555566666666666666666666555555555544 3333333333332222222233355555566666


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM  164 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (186)
                      ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|.+..++..++.++..     .|++++
T Consensus       249 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~  323 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-----QGNIEE  323 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----TTCHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-----CCCHHH
Confidence            666666666666666666666566666666666666666666666666666666655555555555555     555555


Q ss_pred             cchhhhhccc
Q 044796          165 STDNFKAVKD  174 (186)
Q Consensus       165 A~~~~~~~~~  174 (186)
                      |+..|++++.
T Consensus       324 A~~~~~~al~  333 (388)
T d1w3ba_         324 AVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            6666655543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.2e-22  Score=131.94  Aligned_cols=106  Identities=29%  Similarity=0.519  Sum_probs=99.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.+.+.|+.++..|+|++|+.+|++++.++|.                                 ++.+|.++|.+|.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~---------------------------------~~~~~~~lg~~y~   49 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------------------------VAVYYTNRALCYL   49 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------------------------CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------CHHHHHhHHHHHh
Confidence            3678999999999999999999999999999999                                 3389999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      ..|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++...
T Consensus        50 ~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          50 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            99999999999999999999999999999999999999999999999999998865443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=137.66  Aligned_cols=167  Identities=11%  Similarity=0.083  Sum_probs=140.5

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK   85 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   85 (186)
                      ...+..|..++..|++++|+.+|+++++.+|+++.++..+|.+. ..++.+.+...+.......|.++..+..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34678999999999999999999999999999999999999887 55566655554443333444456899999999999


Q ss_pred             hccHHHHHHHHHHHHhcCcc---------------------------------------------------cHHHHHHHH
Q 044796           86 LGKFEESIKECTKALELNPT---------------------------------------------------YMKALIRRA  114 (186)
Q Consensus        86 ~~~~~~A~~~~~~al~~~p~---------------------------------------------------~~~~~~~lg  114 (186)
                      .|++++|+..+++++..+|.                                                   ++.++..+|
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            99999998888887765543                                                   245678899


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          115 EAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       115 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      .++...|++++|+..|++++..+|+++.++..+|.++..     .|++++|+..|++++..+|+
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~  238 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQPG  238 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhcccc-----cccchhHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999     99999999999998644333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.8e-21  Score=125.46  Aligned_cols=132  Identities=18%  Similarity=0.138  Sum_probs=114.6

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +..+-.+++.|..+...|+|++|++.|.++   .|.                                 ++.+|+++|.+
T Consensus         2 ~~~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~---------------------------------~~~~~~nlG~~   45 (192)
T d1hh8a_           2 LVEAISLWNEGVLAADKKDWKGALDAFSAV---QDP---------------------------------HSRICFNIGCM   45 (192)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC---------------------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC---------------------------------CHHHHHHHHHH
Confidence            345667889999999999999999999863   333                                 23688999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------hHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN----------------NQAKRT  146 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~  146 (186)
                      +..+|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|++++...|.+                .+++++
T Consensus        46 ~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n  125 (192)
T d1hh8a_          46 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN  125 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHH
T ss_pred             HHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999876654                356778


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcccC
Q 044796          147 ILRKLKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       147 l~~~~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +|.++..     ++++++|++.|+.++..
T Consensus       126 ~a~~~~~-----~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_         126 IAFMYAK-----KEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHH-----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-----CCCHHHHHHHHHHHHhc
Confidence            8877777     99999999999888643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.4e-21  Score=130.73  Aligned_cols=117  Identities=20%  Similarity=0.142  Sum_probs=109.4

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.+..++.+|.++...|++++|+..|+++++++|++                                 +.+|..+|.++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---------------------------------~~a~~~lg~~~   81 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------------------------PEVFNYLGIYL   81 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---------------------------------HHHHhhhchHH
Confidence            568899999999999999999999999999999993                                 38899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..+|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++.+|++......++.+...
T Consensus        82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_          82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888777765555

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=4.6e-21  Score=123.90  Aligned_cols=136  Identities=27%  Similarity=0.495  Sum_probs=114.2

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +..++.+...|..++..|+|.+|+..|.++++..+........             ..    .....+....++.++|.+
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~~nla~~   86 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED-------------AD----GAKLQPVALSCVLNIGAC   86 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCH-------------HH----HGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhh-------------HH----HHHhChhhHHHHHHHHHH
Confidence            3567778899999999999999999999999875542111000             00    112234566899999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      +..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...++.+...+.
T Consensus        87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998877643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-20  Score=132.41  Aligned_cols=164  Identities=7%  Similarity=-0.008  Sum_probs=140.0

Q ss_pred             hHHHHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGI   81 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   81 (186)
                      +...+|+.+|.++...| ++++|+..++++++.+|++..+|..+|.+. ..++.+.+...+.......|.+..+|.++|.
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~  154 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  154 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence            45678999999999876 599999999999999999999999999887 5566666665555545555556699999999


Q ss_pred             HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796           82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH------FEEAIADMKKILEFDPSNNQAKRTILRKLKEMG  155 (186)
Q Consensus        82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  155 (186)
                      ++...|++++|+.+++++++++|.+..+|+++|.++...+.      +++|+..+.++++++|++..+|..++.++..  
T Consensus       155 ~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~--  232 (315)
T d2h6fa1         155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--  232 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--
T ss_pred             HHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh--
Confidence            99999999999999999999999999999999999988876      6899999999999999999999999876654  


Q ss_pred             HHhhccccccchhhhhcc
Q 044796          156 NSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~  173 (186)
                          ..++++...++.++
T Consensus       233 ----~~~~~~~~~~~~~~  246 (315)
T d2h6fa1         233 ----RGLSKYPNLLNQLL  246 (315)
T ss_dssp             ----TCGGGCHHHHHHHH
T ss_pred             ----cChHHHHHHHHHHH
Confidence                33566777776663

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=110.45  Aligned_cols=100  Identities=17%  Similarity=0.258  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796           75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM  154 (186)
Q Consensus        75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  154 (186)
                      -+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..+.++++++|+++.++.++|.++.. 
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-   83 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-   83 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH-
Confidence            3567899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHhhccccccchhhhhcccCCCCc
Q 044796          155 GNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                          +|++++|+..|++++..+|..
T Consensus        84 ----~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          84 ----LNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             ----TTCHHHHHHHHHHHHTTCTTC
T ss_pred             ----ccCHHHHHHHHHHHHHhCCCC
Confidence                999999999999997555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.6e-19  Score=108.48  Aligned_cols=112  Identities=21%  Similarity=0.300  Sum_probs=98.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      +.|..+.++|+.++..|+|++|+.+|+++++++|++                                 +.++.++|.++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------------------------~~~~~~~a~~~   48 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------------------------MTYITNQAAVY   48 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------------------------HHHHHhHHHHH
Confidence            367889999999999999999999999999999993                                 38899999999


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796           84 LKLGKFEESIKECTKALELNPTYM-------KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR  149 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  149 (186)
                      ..+|+|++|+..++++++++|.++       .++..+|.++..++++++|+.+|.+++..+|+ +.+...+..
T Consensus        49 ~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          49 FEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            999999999999999999998774       46777888899999999999999999999876 555554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.1e-19  Score=123.08  Aligned_cols=100  Identities=21%  Similarity=0.225  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      ..+.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  114 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcccC
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      +..     +|++++|+..|++++..
T Consensus       115 ~~~-----~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         115 LYY-----GGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHH-----TTCHHHHHHHHHHHHHH
T ss_pred             HHH-----HhhHHHHHHHHHHHHhh
Confidence            998     99999999999988633

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.7e-19  Score=107.24  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=98.5

Q ss_pred             HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh---h
Q 044796           10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK---L   86 (186)
Q Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~   86 (186)
                      -.+++.++..+++++|.+.|++++.++|++                                 +.+++++|.++..   .
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---------------------------------~~~~~n~a~~L~~s~~~   49 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS---------------------------------KSTQFEYAWCLVRTRYN   49 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---------------------------------HHHHHHHHHHHTTSSSH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC---------------------------------HHHHHHHHHHHHHhcch
Confidence            356778899999999999999999999993                                 3888999999876   5


Q ss_pred             ccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           87 GKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +++++|+..+++++..+|..  +.+++.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            56778999999999988765  56899999999999999999999999999999999999888876655

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.80  E-value=5.6e-19  Score=106.29  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      +.+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++..   
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~---   96 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN---   96 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH---
Confidence            44566666666666666666666666666666666666666666666666666666666666666666666655555   


Q ss_pred             Hhhccccccchhhhhc
Q 044796          157 SILGRFGMSTDNFKAV  172 (186)
Q Consensus       157 ~~~~~~~~A~~~~~~~  172 (186)
                        .|++++|++++++.
T Consensus        97 --~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 --EHNANAALASLRAW  110 (112)
T ss_dssp             --HHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHH
Confidence              55555565555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.79  E-value=4.5e-19  Score=106.69  Aligned_cols=92  Identities=15%  Similarity=0.066  Sum_probs=79.0

Q ss_pred             hhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc
Q 044796           43 ESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE  121 (186)
Q Consensus        43 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  121 (186)
                      ++..|... ..++...+...+.......|..+.+|..+|.++...|++++|+.+++++++++|+++.+++.+|.++..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            34456554 56666776666655555556667999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 044796          122 HFEEAIADMKKIL  134 (186)
Q Consensus       122 ~~~~A~~~~~~al  134 (186)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999986

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.5e-19  Score=113.27  Aligned_cols=98  Identities=21%  Similarity=0.272  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                      .+..+...|..++..|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+++.++..+|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhhhccc
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      ..     +|++++|+.+|++++.
T Consensus        89 ~~-----~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          89 MA-----LGKFRAALRDYETVVK  106 (159)
T ss_dssp             HH-----TTCHHHHHHHHHHHHH
T ss_pred             HH-----cCCHHHHHHHHHHHHH
Confidence            99     9999999999999963

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=5.4e-19  Score=111.08  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=92.5

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh--------
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL--------   84 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--------   84 (186)
                      +..+.+.+.|++|+..|+++++++|++++                                 +++++|.++.        
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~---------------------------------~~~~~g~~l~~~~~~~~~   50 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDAD---------------------------------NLTRWGGVLLELSQFHSI   50 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHH---------------------------------HHHHHHHHHHHHHHHSCH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchH---------------------------------HHHHHHHHHHHhhhhhhh
Confidence            44567788999999999999999999654                                 4555555544        


Q ss_pred             --hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796           85 --KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-----------FEEAIADMKKILEFDPSNNQAKRTILRKL  151 (186)
Q Consensus        85 --~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  151 (186)
                        ..+.+++|+..|+++++++|+++.+++++|.++..+|+           +++|+.+|+++++++|++..++..++.+.
T Consensus        51 ~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          51 SDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence              35667899999999999999999999999999988764           68999999999999999999999999776


Q ss_pred             HH
Q 044796          152 KE  153 (186)
Q Consensus       152 ~~  153 (186)
                      ..
T Consensus       131 ka  132 (145)
T d1zu2a1         131 KA  132 (145)
T ss_dssp             TH
T ss_pred             HH
Confidence            65

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=6.9e-19  Score=116.22  Aligned_cols=95  Identities=20%  Similarity=0.193  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..+...|..++..|+|++|+..|++++.++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+|..+|.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccccchhhhhcc
Q 044796          154 MGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~  173 (186)
                           +|++++|+..|++++
T Consensus        85 -----l~~~~~A~~~~~~al   99 (201)
T d2c2la1          85 -----MESYDEAIANLQRAY   99 (201)
T ss_dssp             -----TTCHHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHH
Confidence                 999999999999885

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.1e-19  Score=108.06  Aligned_cols=100  Identities=20%  Similarity=0.249  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      ..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|.++.++..++.++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH--hhccccccchhhhhcc
Q 044796          154 MGNS--ILGRFGMSTDNFKAVK  173 (186)
Q Consensus       154 ~~~~--~~~~~~~A~~~~~~~~  173 (186)
                      +|..  .++++++|+.+|++++
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHH
Confidence            8876  5899999999999886

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-16  Score=104.82  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..++++|.+++..|++++|+.+|+++++++|+                                 .+.+|+++|.++.
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---------------------------------~~~a~~~~g~~~~   81 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---------------------------------LAVAYFQRGMLYY   81 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------------------CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---------------------------------hhhhHHHHHHHHH
Confidence            3567999999999999999999999999999999                                 3389999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPT----------------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      .+|++++|+..|++++...|.                ...+++++|.++..+|++++|+..+.+++.+.|+........+
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~A  161 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  161 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            999999999999999986443                2578999999999999999999999999999998654444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.74  E-value=1.1e-17  Score=106.40  Aligned_cols=118  Identities=23%  Similarity=0.339  Sum_probs=95.8

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .+..++..|..++..|+|++|+..|++++++.|..++...                     ....+..+.+|.++|.++.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---------------------~~~~~~~a~~~~nlg~~~~   66 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---------------------FDHAGFDAFCHAGLAEALA   66 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---------------------CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---------------------cccchhHHHHHHHHHHHHH
Confidence            3445555688999999999999999999999998554321                     1122334578999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796           85 KLGKFEESIKECTKALELNPT-----------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA  143 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  143 (186)
                      .+|++++|+..+++++.+.|.           ...+++++|.++..+|++++|+..|++++++.|+....
T Consensus        67 ~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          67 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence            999999999999999987543           34578999999999999999999999999997765433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.4e-17  Score=93.45  Aligned_cols=90  Identities=19%  Similarity=0.128  Sum_probs=76.5

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.++++|..+++.|+|++|+..|++|+++.|.++.                          .....+.++.++|.++.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~--------------------------~~~~~~~~l~~Lg~~~~   57 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI--------------------------STIDKVSVLDYLSYAVY   57 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------------------------CSSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc--------------------------cCccHHHHHHHHhhHHH
Confidence            3788999999999999999999999999999888332                          22224578899999999


Q ss_pred             hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q 044796           85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL  120 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  120 (186)
                      ..|++++|+..++++++++|+++.++.+++.+...+
T Consensus        58 ~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          58 QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988765544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=100.35  Aligned_cols=100  Identities=22%  Similarity=0.317  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +..+...|..++..|+|++|+..|++++...|..               ..++.++|.|+..+|++++|+..+++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            4677789999999999999999999999987643               3567889999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          138 PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       138 p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      |+++.++..+|.++..     +|++++|+..|++++..+|
T Consensus        93 p~~~~a~~~~g~~~~~-----~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLA-----VNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             TTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCS
T ss_pred             ccchhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999     9999999999999964433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-15  Score=88.33  Aligned_cols=81  Identities=16%  Similarity=0.039  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR  145 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  145 (186)
                      +.-++.+|.++...|+|++|+.+|++|+++.|.+       ..++.++|.++..+|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4677899999999999999999999999986543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 044796          146 TILRKLKE  153 (186)
Q Consensus       146 ~l~~~~~~  153 (186)
                      +++.+...
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876655

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=3.2e-16  Score=98.22  Aligned_cols=98  Identities=20%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796           81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL----------EHFEEAIADMKKILEFDPSNNQAKRTILRK  150 (186)
Q Consensus        81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  150 (186)
                      ..+.+++.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.+++++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            4466788899999999999999999999999999999855          455889999999999999999999999999


Q ss_pred             HHHHHHH------hhccccccchhhhhcc--cCCCC
Q 044796          151 LKEMGNS------ILGRFGMSTDNFKAVK--DPNTG  178 (186)
Q Consensus       151 ~~~~~~~------~~~~~~~A~~~~~~~~--~~~~~  178 (186)
                      +..+|..      ..+.|+.|+++|++++  +|+..
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            9998753      3567899999999996  55443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.6e-15  Score=105.50  Aligned_cols=139  Identities=12%  Similarity=0.030  Sum_probs=112.1

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++.+...|+++...|+|++|+.+|.+++++.+..                          . ..+..+.++.++|.+|.
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--------------------------~-~~~~~a~~~~~~g~~y~   88 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--------------------------G-NEDEAGNTYVEAYKCFK   88 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--------------------------T-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--------------------------C-CCHHHHHHHHHHHHHHH
Confidence            36778899999999999999999999999986541                          1 11223578999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTY------MKALIRRAEAHEK-LEHFEEAIADMKKILEFDPSN------NQAKRTILRKL  151 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~  151 (186)
                      .+|++++|+.++++++.+.+..      ..++..+|.++.. .|++++|+..|.+++++.+..      ..++..+|.++
T Consensus        89 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~  168 (290)
T d1qqea_          89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence            9999999999999999886554      5678888988865 699999999999999875432      34466677777


Q ss_pred             HHHHHHhhccccccchhhhhcccC
Q 044796          152 KEMGNSILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       152 ~~~~~~~~~~~~~A~~~~~~~~~~  175 (186)
                      ..     +|+|++|+..|++++..
T Consensus       169 ~~-----~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         169 AL-----DGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HH-----TTCHHHHHHHHHHHHHT
T ss_pred             HH-----cChHHHHHHHHHHHHHh
Confidence            66     99999999999988533

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.6e-15  Score=106.29  Aligned_cols=147  Identities=13%  Similarity=-0.007  Sum_probs=116.0

Q ss_pred             cHHHHHHHHHHHHhccCCChhhhhccchhhhh-----------cCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc--
Q 044796           21 KYEEALLQYEVALRVASVPERAESASAPEAKE-----------GQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG--   87 (186)
Q Consensus        21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--   87 (186)
                      ..++|+.++++++..+|++..+|..++.+...           +....+...+.......|.++.+|..+|.++...+  
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            35899999999999999999988766544311           11223333333223333445588999998887766  


Q ss_pred             cHHHHHHHHHHHHhcCcccHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796           88 KFEESIKECTKALELNPTYMKAL-IRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST  166 (186)
Q Consensus        88 ~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~  166 (186)
                      ++++|+..++++++.+|.+..++ ...|.++...|.+++|+..++++++++|++..+|..+|.++..     +|++++|+
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~-----~~~~~~A~  198 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ-----LHPQPDSG  198 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH-----HSCCCCSS
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----hcCHHHHH
Confidence            48999999999999999988876 5778999999999999999999999999999999999999999     77787777


Q ss_pred             hhhhhc
Q 044796          167 DNFKAV  172 (186)
Q Consensus       167 ~~~~~~  172 (186)
                      ..+.++
T Consensus       199 ~~~~~~  204 (334)
T d1dcea1         199 PQGRLP  204 (334)
T ss_dssp             SCCSSC
T ss_pred             HHHHHh
Confidence            777655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.63  E-value=2.3e-15  Score=95.14  Aligned_cols=100  Identities=19%  Similarity=0.210  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY----------------MKALIRRAEAHEKLEHFEEAIADMKKILEF  136 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (186)
                      +..+...|..++..|+|.+|+..|++++...|..                ...+.++|.|+..+|++++|+..+.+++++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4667889999999999999999999999875432                246788999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          137 DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       137 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      +|.+..+++.+|.++..     +|++++|+.+|++++..+|
T Consensus        97 ~p~~~ka~~~~g~~~~~-----lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          97 DKNNVKALYKLGVANMY-----FGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             STTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHST
T ss_pred             cchhhhhhHHhHHHHHH-----cCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999     9999999999999964333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.3e-16  Score=95.10  Aligned_cols=97  Identities=5%  Similarity=-0.033  Sum_probs=84.7

Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHH
Q 044796           78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK---LEHFEEAIADMKKILEFDPSN--NQAKRTILRKLK  152 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~  152 (186)
                      .++..+...+++++|...|++++.++|+++.+++++|.++..   .+++++|+..|++++..+|.+  ..+++++|.++.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            466778889999999999999999999999999999999986   456678999999999998876  458999999998


Q ss_pred             HHHHHhhccccccchhhhhcccCCCCc
Q 044796          153 EMGNSILGRFGMSTDNFKAVKDPNTGA  179 (186)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (186)
                      .     .|++++|+++|++++..+|+.
T Consensus        84 ~-----~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          84 R-----LKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             H-----TTCHHHHHHHHHHHHHHCTTC
T ss_pred             H-----HhhhHHHHHHHHHHHHhCcCC
Confidence            8     999999999999996444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.9e-15  Score=97.05  Aligned_cols=99  Identities=22%  Similarity=0.324  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALEL----------------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      ..+...|..++..|+|.+|+..|+++++.                +|....++.++|.++..+|++++|+..+.++++++
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence            45677899999999999999999999864                45667789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796          138 PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT  177 (186)
Q Consensus       138 p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  177 (186)
                      |+++.++..+|.++..     +|++++|+..|++++..+|
T Consensus       108 p~~~~a~~~~g~~~~~-----l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1         108 PSNTKALYRRAQGWQG-----LKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             TTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCT
T ss_pred             hhhhhHHHhHHHHHHH-----ccCHHHHHHHHHHHHHhCC
Confidence            9999999999999999     9999999999999964433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.60  E-value=3.7e-15  Score=95.64  Aligned_cols=101  Identities=18%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPT---------------YMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                      +..+...|..++..|+|.+|+..|++++...|.               ...++.++|.|+..+|++++|+.+++++++++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            477888999999999999999999999975322               23567889999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796          138 PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG  178 (186)
Q Consensus       138 p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (186)
                      |++..+++.+|.++..     +|++++|+.+|++++..+|+
T Consensus        95 p~~~~a~~~~~~~~~~-----l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLL-----MNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             TTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHSCTT
T ss_pred             cchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999     99999999999999644443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.6e-15  Score=108.98  Aligned_cols=139  Identities=12%  Similarity=-0.003  Sum_probs=94.4

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEE   91 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (186)
                      +......+.|+.|+..+.+++.++|.+...+..+|... ..++...+........  .+....++..+|.++..+|++++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHH--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHcccHHH
Confidence            44555677888999999999999999999999988776 3344333333322211  11223688999999999999999


Q ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      |+.+|++|++++|+++.+++++|.++...|++.+|+.+|.+++.++|..+.++.+|+..+..
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=1.8e-13  Score=88.38  Aligned_cols=126  Identities=18%  Similarity=0.170  Sum_probs=102.0

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      +...+.+...|......|++++|+..|.+++.+.+.........+......           .....+....++..++.+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~-----------r~~l~~~~~~a~~~la~~   76 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPF-----------ATALVEDKVLAHTAKAEA   76 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999887654333222111000           011122344788999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH-------HhcCCC
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI-------LEFDPS  139 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~~~p~  139 (186)
                      +...|++++|+..+++++..+|.+..+|..++.++...|++.+|++.|+++       +-++|.
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999999999999999998       446675

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=8.3e-15  Score=103.68  Aligned_cols=74  Identities=18%  Similarity=0.017  Sum_probs=41.7

Q ss_pred             HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796           79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK  152 (186)
Q Consensus        79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  152 (186)
                      +|.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.++..|..++..+.
T Consensus       248 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            34444444555555555555555555555555556666555666666666666666666655555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.3e-13  Score=95.73  Aligned_cols=145  Identities=12%  Similarity=0.041  Sum_probs=111.9

Q ss_pred             hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ..+..+.++|.++...|++++|+.+|++++.+.+....                           ......++..+|.++
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------~~~~~~~~~~l~~~~  127 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------------------------FRRGANFKFELGEIL  127 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---------------------------chhHHHHHHHHHHhH
Confidence            45678999999999999999999999999998776221                           112347788899888


Q ss_pred             hh-hccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796           84 LK-LGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN  156 (186)
Q Consensus        84 ~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  156 (186)
                      .. .|++++|+..+++++++.+.      ...++..+|.++..+|++++|+..|++++...|.++.........+...|.
T Consensus       128 ~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (290)
T d1qqea_         128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL  207 (290)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHH
Confidence            55 69999999999999987432      356789999999999999999999999999998876443333222222222


Q ss_pred             --HhhccccccchhhhhcccC
Q 044796          157 --SILGRFGMSTDNFKAVKDP  175 (186)
Q Consensus       157 --~~~~~~~~A~~~~~~~~~~  175 (186)
                        ...+++..|...+++++..
T Consensus       208 ~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         208 CQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHhccHHHHHHHHHHHHHh
Confidence              2378889999999888543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.47  E-value=4e-14  Score=89.59  Aligned_cols=95  Identities=25%  Similarity=0.250  Sum_probs=79.8

Q ss_pred             HHHHH--HHHHHhhhccHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796           74 ICHSN--RGICFLKLGKFEESIKECTKALELNPTY------------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS  139 (186)
Q Consensus        74 ~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  139 (186)
                      .++..  .|..++..|+|++|+..|++++++.|+.            ..+|.++|.++..+|++++|+..+.+++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            44444  4888999999999999999999987754            467899999999999999999999999987542


Q ss_pred             -----------ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          140 -----------NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       140 -----------~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                                 ...+++++|.++..     +|++++|+.+|++++
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~-----lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDG-----LGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHH-----HHHHHHHHHHHHHHH
Confidence                       13356778888888     999999999999885

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.4e-15  Score=110.60  Aligned_cols=161  Identities=10%  Similarity=0.006  Sum_probs=94.5

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccc-----------hhhh-----------------------
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA-----------PEAK-----------------------   51 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-----------~~~~-----------------------   51 (186)
                      ++++..+|.++...|++++|   |+++|..+|+....+...+           ....                       
T Consensus        20 a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~   96 (497)
T d1ya0a1          20 TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLE   96 (497)
T ss_dssp             TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHH
Confidence            34455667777778888776   7788888776544321110           0000                       


Q ss_pred             --hcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 044796           52 --EGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAD  129 (186)
Q Consensus        52 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  129 (186)
                        .+....+...+...-...+.....+..+|..+...|++++|+..+.+++..+|  ..++..+|.++...|++++|+.+
T Consensus        97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHH
Confidence              00011112222222223334456788889999999999999999999888766  46788999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCC
Q 044796          130 MKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPN  176 (186)
Q Consensus       130 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  176 (186)
                      |.+|++++|+++.+++.+|.++..     .|++.+|+.+|.+++..+
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~-----~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASS-----KGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999998     999999999999986443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=6.9e-12  Score=87.59  Aligned_cols=155  Identities=10%  Similarity=-0.039  Sum_probs=70.9

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-hhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHHHHHH
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPER-AESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      |...+......|+++.|...|++++...|.+.. +|..++... ..+..+.+.    .++...|..    ...+...|..
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~----~~~~~~~a~~  177 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC----THHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHH
Confidence            444455555555566666666666555555432 333333222 222222222    222222222    2444444433


Q ss_pred             H-hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHH
Q 044796           83 F-LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ----AKRTILRKLKEMGNS  157 (186)
Q Consensus        83 ~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~  157 (186)
                      . ...|+.+.|...|++++..+|+++..|..++..+...|+++.|...|++++...|.++.    .|......-..    
T Consensus       178 e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~----  253 (308)
T d2onda1         178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----  253 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH----
T ss_pred             HHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH----
Confidence            2 22345555555555555555555555555555555555555555555555555443332    33333333233    


Q ss_pred             hhccccccchhhhhc
Q 044796          158 ILGRFGMSTDNFKAV  172 (186)
Q Consensus       158 ~~~~~~~A~~~~~~~  172 (186)
                       .|+.+.+.+.++++
T Consensus       254 -~G~~~~~~~~~~r~  267 (308)
T d2onda1         254 -IGDLASILKVEKRR  267 (308)
T ss_dssp             -HSCHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHH
Confidence             45555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.35  E-value=4.6e-13  Score=91.53  Aligned_cols=123  Identities=10%  Similarity=0.062  Sum_probs=102.1

Q ss_pred             HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796           13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES   92 (186)
Q Consensus        13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   92 (186)
                      +...+..|++++|+..|+++++.+|++                                 +.++..+|.++...|++++|
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d---------------------------------~~ar~~La~lL~~~G~~e~A   49 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKD---------------------------------ASLRSSFIELLCIDGDFERA   49 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTC---------------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCC---------------------------------HHHHHHHHHHHHHCCCHHHH
Confidence            456788999999999999999999993                                 38889999999999999999


Q ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhhccccccchhhhh
Q 044796           93 IKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF-DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKA  171 (186)
Q Consensus        93 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~  171 (186)
                      +..++++++++|++..++..++.++...+..+++...+.+.... +|.....+...+..+..     .|++++|++.+.+
T Consensus        50 ~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~-----~gd~~~A~~~~~~  124 (264)
T d1zbpa1          50 DEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMV-----SQDYEQVSELALQ  124 (264)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHH-----HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence            99999999999999999999999988888887776665554433 45445555666666666     8999999999987


Q ss_pred             cc
Q 044796          172 VK  173 (186)
Q Consensus       172 ~~  173 (186)
                      +.
T Consensus       125 a~  126 (264)
T d1zbpa1         125 IE  126 (264)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.2e-11  Score=86.73  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=102.6

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      .++....+|.+++..|++++|+.+|+++++..|++..                            +....++..+|.++.
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------------------------~~~~~a~~~lg~~~~   62 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------------------------YSRIVATSVLGEVLH   62 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------------------------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------------------------HHHHHHHHHHHHHHH
Confidence            5677778899999999999999999999999998322                            113357778888888


Q ss_pred             hhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--------ChHHHHHHHHH
Q 044796           85 KLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--------NNQAKRTILRK  150 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~  150 (186)
                      ..|++++|+..++++++..|..      ..++..++.++...|++..|...+.+++.+.+.        ...+...++.+
T Consensus        63 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  142 (366)
T d1hz4a_          63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  142 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHH
Confidence            8889988988888888764432      456777888888888888888888888865322        12344555655


Q ss_pred             HHHHHHHhhccccccchhhhhcc
Q 044796          151 LKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       151 ~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      +..     .++++.+...+..+.
T Consensus       143 ~~~-----~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_         143 LWA-----WARLDEAEASARSGI  160 (366)
T ss_dssp             HHH-----TTCHHHHHHHHHHHH
T ss_pred             HHH-----hcchhhhHHHHHHHH
Confidence            555     777777777776664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.8e-11  Score=84.13  Aligned_cols=164  Identities=13%  Similarity=0.025  Sum_probs=124.2

Q ss_pred             HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhcc-----chhh-hhcCc-------hhHHHhhCCCcchhHH
Q 044796            5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESAS-----APEA-KEGQS-------ASEKKEVAPAPEMAEL   71 (186)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~-~~~~~-------~~~~~~~~~~~~~~~~   71 (186)
                      .+..+..+|.++...|+++.+...+.+++...+.........     +... ..+..       ..............+.
T Consensus       132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  211 (366)
T d1hz4a_         132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW  211 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch
Confidence            345677889999999999999999999999887654433221     1111 11221       2222333444444555


Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCCh
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEF------DPSNN  141 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~  141 (186)
                      ...++..+|.++...|++++|...+++++...|.+    ...+..+|.++...|++++|...+++++..      .|...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  291 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN  291 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH
Confidence            66788889999999999999999999999876644    556778999999999999999999999843      45567


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          142 QAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      .++..+|.++..     .|++++|++.+++++
T Consensus       292 ~~~~~la~~~~~-----~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         292 RNLLLLNQLYWQ-----AGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Confidence            788889988888     899999999998875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=3.1e-11  Score=77.65  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc----------------------HHHHHHHHHHHHHhcCHHHHHHH
Q 044796           72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY----------------------MKALIRRAEAHEKLEHFEEAIAD  129 (186)
Q Consensus        72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~  129 (186)
                      ....+...|......|++++|+..|.+++.+.+..                      ..++..++.++..+|++++|+..
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            45888999999999999999999999999986542                      25788999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796          130 MKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV  172 (186)
Q Consensus       130 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~  172 (186)
                      +++++.++|.+..+|..++.++..     .|++.+|++.|+++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~-----~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYL-----SDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHT-----TTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHH-----hcCHHHHHHHHHHH
Confidence            999999999999999999999999     99999999999776

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=4.1e-10  Score=78.40  Aligned_cols=138  Identities=7%  Similarity=-0.155  Sum_probs=112.1

Q ss_pred             HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh--hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796            7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA--KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL   84 (186)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   84 (186)
                      ..|...+......|+++.|...|.++++..|.....+...+...  ..++.+.+...+.......|.++..|...+....
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            45778888888999999999999999999999999888877654  2344455555444444445556699999999999


Q ss_pred             hhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796           85 KLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK  144 (186)
Q Consensus        85 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  144 (186)
                      ..|+++.|...|++++...|.+    ...|......-...|+.+.+...++++.+..|......
T Consensus       215 ~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~  278 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK  278 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccc
Confidence            9999999999999999977644    34677777777888999999999999999999887643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.14  E-value=7.3e-10  Score=75.28  Aligned_cols=163  Identities=15%  Similarity=0.071  Sum_probs=102.4

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC-----chhHHHhhC-----------------
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ-----SASEKKEVA-----------------   63 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------------   63 (186)
                      |++++.+|..++..+++++|+++|+++.+.  .+..+.+.+|.++..+.     ...+...+.                 
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~   79 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL   79 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence            678999999999999999999999999765  57788888887764311     111110000                 


Q ss_pred             ------CCcchhH-----------HHHHHH------------------------------------HHHHHHHhh----h
Q 044796           64 ------PAPEMAE-----------LRSICH------------------------------------SNRGICFLK----L   86 (186)
Q Consensus        64 ------~~~~~~~-----------~~~~~~------------------------------------~~~a~~~~~----~   86 (186)
                            .......           ....+.                                    ..+|.++..    .
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  159 (265)
T d1ouva_          80 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP  159 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred             cccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcc
Confidence                  0000000           000111                                    122222221    1


Q ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796           87 GKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF  162 (186)
Q Consensus        87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  162 (186)
                      .+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  .++.+.+.||.++. -|....+++
T Consensus       160 ~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~-~G~g~~~n~  234 (265)
T d1ouva_         160 KDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQY-NGEGVTRNE  234 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-TTSSSSCCS
T ss_pred             cccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHH-cCCCCccCH
Confidence            222333333333332  3467788899988887    67899999999999887  46888999998775 344446689


Q ss_pred             cccchhhhhcccC
Q 044796          163 GMSTDNFKAVKDP  175 (186)
Q Consensus       163 ~~A~~~~~~~~~~  175 (186)
                      +.|.++|+++.+.
T Consensus       235 ~~A~~~~~kAa~~  247 (265)
T d1ouva_         235 KQAIENFKKGCKL  247 (265)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999888543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.3e-09  Score=64.69  Aligned_cols=81  Identities=14%  Similarity=0.039  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhh---hccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           73 SICHSNRGICFLK---LGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        73 ~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      ....+..|.++.+   ..+.++++..++.++..+|.+. +.++.+|.+++++|+|+.|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            3667777777764   4567899999999999999765 79999999999999999999999999999999999977666


Q ss_pred             HHHHH
Q 044796          149 RKLKE  153 (186)
Q Consensus       149 ~~~~~  153 (186)
                      .+-..
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.11  E-value=2.5e-10  Score=77.78  Aligned_cols=74  Identities=14%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796           80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE  153 (186)
Q Consensus        80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  153 (186)
                      +.-.+..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            34567889999999999999999999999999999999999999999999999999999999999999988877

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=6.7e-09  Score=61.51  Aligned_cols=81  Identities=11%  Similarity=0.026  Sum_probs=69.0

Q ss_pred             HHHHHHhHhHHHHc---ccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796            6 ANEAKLEGNKLFAE---GKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC   82 (186)
Q Consensus         6 a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   82 (186)
                      ++..|+.|.++.+.   ++.++++..++++++.+|.+                                ..++++.+|..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------------------------~rd~lY~Lav~   82 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------------------------RRECLYYLTIG   82 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------------------------HHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------------------------HHHHHHHHHHH
Confidence            56789999999865   46789999999999987762                                23799999999


Q ss_pred             HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 044796           83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE  118 (186)
Q Consensus        83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  118 (186)
                      |.++|+|++|..+++++++++|++..+....-.+-.
T Consensus        83 yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          83 CYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999998776665543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.78  E-value=6e-08  Score=58.89  Aligned_cols=115  Identities=11%  Similarity=0.013  Sum_probs=83.6

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTK   98 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   98 (186)
                      ..++++|+.+|+++.+....                                   .+...++.  ....+.++|+.++++
T Consensus         6 ~kd~~~A~~~~~kaa~~g~~-----------------------------------~a~~~l~~--~~~~~~~~a~~~~~~   48 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNEM-----------------------------------FGCLSLVS--NSQINKQKLFQYLSK   48 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT-----------------------------------THHHHHHT--CTTSCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCh-----------------------------------hhhhhhcc--ccccCHHHHHHHHhh
Confidence            35899999999999887543                                   33444443  334678888999988


Q ss_pred             HHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796           99 ALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKD  174 (186)
Q Consensus        99 al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~  174 (186)
                      +.+.  .++.+.+.+|.++..    ..++++|+.+|+++.+.  .++.+...++.++.. |.....++.+|+++|+++.+
T Consensus        49 aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~-G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          49 ACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA-GKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHH
T ss_pred             hhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc-CCccCCCHHHHHHHHHHHHH
Confidence            8875  578888888888775    45788899999998874  467788888876644 33345677888888887754


Q ss_pred             C
Q 044796          175 P  175 (186)
Q Consensus       175 ~  175 (186)
                      .
T Consensus       124 ~  124 (133)
T d1klxa_         124 L  124 (133)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=8.7e-07  Score=59.67  Aligned_cols=96  Identities=10%  Similarity=0.010  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796           73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAKRTIL  148 (186)
Q Consensus        73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~  148 (186)
                      |.+++.+|..+...+++++|+.+|+++.+.  +++.+++.+|.++..    ..++..|..+++.+...  .++.+...++
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence            478999999999999999999999999875  578899999999987    66999999999998864  4677777777


Q ss_pred             HHHHHHHHHhhccccccchhhhhcc
Q 044796          149 RKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       149 ~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ..+.. +.......+.|...++.+.
T Consensus        78 ~~~~~-~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          78 NLYYS-GQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             HHHHH-TSSSCCCHHHHHHHHHHHH
T ss_pred             ccccc-ccccchhhHHHHHHHhhhh
Confidence            65543 3333455566666666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=8.6e-06  Score=48.98  Aligned_cols=83  Identities=10%  Similarity=0.015  Sum_probs=67.3

Q ss_pred             cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh----hccHHHHHH
Q 044796           19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK----LGKFEESIK   94 (186)
Q Consensus        19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~   94 (186)
                      ..++++|+.+|+++.+....                                   .+.+.+|.+|..    ..++++|+.
T Consensus        36 ~~~~~~a~~~~~~aa~~g~~-----------------------------------~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_          36 QINKQKLFQYLSKACELNSG-----------------------------------NGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             ccCHHHHHHHHhhhhcccch-----------------------------------hhhhhHHHhhhhccccchhhHHHHH
Confidence            45678888888887765332                                   777888888875    567999999


Q ss_pred             HHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC
Q 044796           95 ECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDP  138 (186)
Q Consensus        95 ~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p  138 (186)
                      +|+++.+.  .++.+.+.+|.++..    ..++++|+.+|+++.+...
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999986  568899999999887    4689999999999988654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.091  Score=37.41  Aligned_cols=110  Identities=11%  Similarity=0.032  Sum_probs=69.5

Q ss_pred             hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-----------------------------
Q 044796           56 ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----------------------------  106 (186)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------------------------  106 (186)
                      ......+...+......+...+.+|..+...|+.++|...|..+... ++.                             
T Consensus       302 ~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~  380 (450)
T d1qsaa1         302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALT  380 (450)
T ss_dssp             HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred             HHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhh
Confidence            33333333333333344566778888888888888888888876653 210                             


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796          107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK  173 (186)
Q Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~  173 (186)
                      ...-...+..+...|....|...+..++..  .++.-...++.....     .|.++.||....++.
T Consensus       381 ~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~-----~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         381 QGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFN-----NQWWDLSVQATIAGK  440 (450)
T ss_dssp             HSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHH-----TTCHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHH-----CCChhHHHHHHHHHH
Confidence            112335567788888888888888777643  245556666666666     777777777766653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.028  Score=29.59  Aligned_cols=34  Identities=35%  Similarity=0.435  Sum_probs=29.3

Q ss_pred             hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      .++.|..+-..|..+...|.|++||+|.+++...
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567788888999999999999999999988654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.32  Score=34.46  Aligned_cols=126  Identities=11%  Similarity=-0.079  Sum_probs=71.8

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-----hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-----KEGQSASEKKEVAPAPEMAELRSICHSNRGICF   83 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   83 (186)
                      ....|..-....+.+.|...+.......+.....+.......     ..+....+................... ++...
T Consensus       217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w-~~~~a  295 (450)
T d1qsaa1         217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMA  295 (450)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHH-HHHHH
Confidence            344455555667888888888887665555443332222111     112222222211111111101112222 33345


Q ss_pred             hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796           84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE  135 (186)
Q Consensus        84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (186)
                      ...+++..+...++.........+.+.|.+|.++..+|+.++|...|..+..
T Consensus       296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            5678898888888765443334578889999999999999999999999875

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.44  E-value=0.18  Score=26.47  Aligned_cols=28  Identities=36%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      ..+-..|..+...|+|++||++.+++..
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556677777788888888877776553

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.18  Score=27.49  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      +..|-.+...|..+-..|+|++|+.+|.++++.
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            457788899999999999999999999999875

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.08  E-value=0.73  Score=33.32  Aligned_cols=51  Identities=16%  Similarity=0.283  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796          107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS  157 (186)
Q Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  157 (186)
                      .......+...+..|+|.-|.+....++..+|++.+++..++.++..+|..
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~  480 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  480 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            556777888889999999999999999999999999999999999998875

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.18  Score=26.33  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796            3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV   35 (186)
Q Consensus         3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   35 (186)
                      ++.|..+...|...=..|+|++|+.+|..+++.
T Consensus         8 l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1           8 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            567788888999999999999999999998875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.90  E-value=2.9  Score=28.34  Aligned_cols=91  Identities=13%  Similarity=0.048  Sum_probs=55.2

Q ss_pred             HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCC-CcchhHH-------HHHHHH
Q 044796            6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP-APEMAEL-------RSICHS   77 (186)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~   77 (186)
                      ++.+...-..+...|.+++.+.+++.++...+.+...+..++.++..-+.+.....+.. .......       ....|-
T Consensus        99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~  178 (336)
T d1b89a_          99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA  178 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcCChH
Confidence            44455566677788999999999999998888888877777766544333333322221 1111100       113345


Q ss_pred             HHHHHHhhhccHHHHHHHH
Q 044796           78 NRGICFLKLGKFEESIKEC   96 (186)
Q Consensus        78 ~~a~~~~~~~~~~~A~~~~   96 (186)
                      .+...|.+.|++++|+...
T Consensus       179 elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         179 ELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHH
Confidence            5666677777777775443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.23  E-value=3.5  Score=27.88  Aligned_cols=56  Identities=20%  Similarity=0.115  Sum_probs=41.4

Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796           76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK  132 (186)
Q Consensus        76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (186)
                      ....-..+...|.+++.+..++.++...+.++..+..++.++.+.+ .++-++.++.
T Consensus       102 l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_         102 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence            3445567777889999999999999888888888888888777654 4444444443

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.20  E-value=0.55  Score=25.46  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=27.9

Q ss_pred             HHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796            9 AKLEGNKLFAEGKYEEALLQYEVALRVASVP   39 (186)
Q Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   39 (186)
                      -..+|..++..|+++++..+|-.|+...|..
T Consensus        23 eV~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP   53 (95)
T d1om2a_          23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP   53 (95)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcCCH
Confidence            4568999999999999999999999999983

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.93  E-value=1.3  Score=31.97  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHH
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE  125 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  125 (186)
                      ......|...+..|+|.-|....+.++..+|++..+...++.++.++|.-.+
T Consensus       431 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         431 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            5566778888899999999999999999999999999999999988876543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=84.87  E-value=2.3  Score=24.58  Aligned_cols=121  Identities=12%  Similarity=0.024  Sum_probs=72.1

Q ss_pred             hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccch------------------hhhh---cCchhHHHhhCCCcchhH
Q 044796           12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAP------------------EAKE---GQSASEKKEVAPAPEMAE   70 (186)
Q Consensus        12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~   70 (186)
                      -|..++..|..++.++...+.....|....-|.-.-.                  ....   +...............  
T Consensus         8 eAKk~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~--   85 (161)
T d1wy6a1           8 DAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL--   85 (161)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC--
T ss_pred             HHHHHHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcch--
Confidence            3556677889999999999988877765554442211                  1100   1111111110000000  


Q ss_pred             HHHHHHHHHHHH-HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796           71 LRSICHSNRGIC-FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD  137 (186)
Q Consensus        71 ~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (186)
                         .-|..+|.- ...+|+-++-...++..++...-.|..+..+|.+|.+.|...+|-+.+.+|.+..
T Consensus        86 ---se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          86 ---NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             ---CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence               123444433 3345555555566666677666678899999999999999999999999987643

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.05  E-value=1.8  Score=23.25  Aligned_cols=28  Identities=4%  Similarity=0.215  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796           74 ICHSNRGICFLKLGKFEESIKECTKALE  101 (186)
Q Consensus        74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~  101 (186)
                      ..+...|.-+-..|+|++|+.+|..+++
T Consensus        16 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          16 VAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555555566666666666665554