Citrus Sinensis ID: 044797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMTDGH
Secondary Structure (PSIPRED)
cccEEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHccccEEEEEcccHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHHHccccEEEccccccHHHHHccEEEEEEccccccHHHHcccccEEEEcccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEcccHHHHHHcccEEEEEccccHHHHHHHcccccHHcccccccEEEEcccccHHHHHHHHHHHHHcccEEEEcccccccHHHcccEEEEEEccccHEEEEEEEcccEEEEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
maskvgfvgldeYSVDMAASLIRSGykvqafeisdplVDKFFMlggirsaspmdagkdVSALVVVISHvdqiddiffghEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKneffidkkvnisgqeihwgYLKINYFIRVMTDGH
Flexible Loop (DISEMBL)
MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVnisgqeihwgylkINYFIRVMTDGH
Low Complexity Region (SEG)
MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMTDGH
Disordered region (IsUnstruct)
****VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVM****
Disordered Region (DISOPRED)
*ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMTDG*
Disordered Region (DISEMBL)
MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMTDGH
Disordered Region (DISPRO)
**SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMTDGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
P0A9V9	298	Uncharacterized oxidoredu	yes	no	0.601	0.348	0.288	1e-09
P0A9V8	298	Uncharacterized oxidoredu	N/A	no	0.601	0.348	0.288	1e-09
P29266	335	3-hydroxyisobutyrate dehy	yes	no	0.624	0.322	0.309	2e-07
Q99L13	335	3-hydroxyisobutyrate dehy	yes	no	0.624	0.322	0.290	8e-07
Q9L7S0	298	Uncharacterized oxidoredu	yes	no	0.589	0.342	0.254	2e-06
Q9V8M5	324	Probable 3-hydroxyisobuty	yes	no	0.664	0.354	0.273	2e-06
Q9SUC0	347	Probable 3-hydroxyisobuty	no	no	0.589	0.293	0.288	3e-06
P77161	292	2-hydroxy-3-oxopropionate	N/A	no	0.601	0.356	0.247	6e-06
Q54CX6	321	Probable 3-hydroxyisobuty	yes	no	0.589	0.317	0.225	2e-05
O34948	288	Uncharacterized oxidoredu	yes	no	0.612	0.368	0.216	4e-05

>sp|P0A9V9|YIHU_SHIFL Uncharacterized oxidoreductase YihU OS=Shigella flexneri GN=yihU PE=3 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 58/104 (55%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           + + F+GL +    MA++L++ G++++ F+++   V      G   +A+P  A KD   +
Sbjct: 2   AAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFI 61

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           + ++ + D + ++ FG  GV +GL   A++I  STI P    KL
Sbjct: 62  ITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKL 105

Shigella flexneri (taxid: 623)
EC: 1EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|P0A9V8|YIHU_ECOLI Uncharacterized oxidoreductase YihU OS=Escherichia coli (strain K12) GN=yihU PE=3 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 58/104 (55%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           + + F+GL +    MA++L++ G++++ F+++   V      G   +A+P  A KD   +
Sbjct: 2   AAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFI 61

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           + ++ + D + ++ FG  GV +GL   A++I  STI P    KL
Sbjct: 62  ITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKL 105

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 1   MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
           MASK  VGF+GL      MA +LI+ GY +  +++   +  +F   G   ++SP D  + 
Sbjct: 35  MASKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEK 94

Query: 59  VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
              ++ ++       +++ G  G+LK ++KG+++I  STI PS  ++L K
Sbjct: 95  ADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAK 144

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 1   MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
           MASK  VGF+GL      MA +L++ GY +  +++   +  +F   G   ++SP +  + 
Sbjct: 35  MASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEK 94

Query: 59  VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
              ++ ++       +++ G  G+LK ++KG+++I  STI PS  ++L K
Sbjct: 95  ADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAK 144

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q9L7S0|YIHU_SALTY Uncharacterized oxidoreductase YihU OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yihU PE=3 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 54/102 (52%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           + F+GL +    MA++L++ G+++  F+++   V +    G   ++SP  A      ++ 
Sbjct: 4   IAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVIT 63

Query: 65  VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           ++ + D +  + FG +GV + L + A++I  STI P     L
Sbjct: 64  MLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQTDNL 105

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 2   ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSA 61
           A  +GFVGL     +MA++LI++G+K+  F+IS P  D     G    A   +  K+   
Sbjct: 28  AKNIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDF 87

Query: 62  LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118
           ++ ++ +   +D  +   E    G+ K  + I  STI P  ++ L+K  +     +I
Sbjct: 88  VITMLPNNAIVDASY--DEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFI 142

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           VGF+GL      M  +LIR+GYKV   +I+  ++  F  +G     +P +  +D   ++ 
Sbjct: 40  VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVIT 99

Query: 65  VISHVDQIDDIFFGHEGVLKGLQ--KGAVIILQSTILPSHMQKL 106
           ++     + D++ G  G+L G    + A+ I  STI P   +K+
Sbjct: 100 MLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKI 143

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|P77161|GLXR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+GF+GL      MA +L R+G+++    I  P+ D+   LG +   +     +    + 
Sbjct: 2   KLGFIGLGIMGTPMAINLARAGHQLHVTTIG-PVADELLSLGAVSVETARQVTEASDIIF 60

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           +++    Q++++ FG  G  K   KG  I+  S+I P   ++  +
Sbjct: 61  IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR 105

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 54/102 (52%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           VGF+GL       A +LI+ G+ +  F++S   +++    G   + SP +  K+   +V 
Sbjct: 25  VGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVT 84

Query: 65  VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           ++     + +++ G  G+ + ++ G +++  STI P+  +++
Sbjct: 85  MLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREV 126

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|O34948|YKWC_BACSU Uncharacterized oxidoreductase YkwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 53/106 (50%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M   +GF+GL      MA+ ++  G+ V  +  +    +     G I   +  D  K+  
Sbjct: 1   MKKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEAD 60

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            ++ ++ +   +++++FG  G+++  ++GA +I  +T  PS  +K+
Sbjct: 61  VIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKI 106

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
297734349	1509	unnamed protein product [Vitis vinifera]	0.658	0.075	0.646	6e-35
359491523	1377	PREDICTED: uncharacterized protein LOC10	0.641	0.080	0.622	1e-30
356522861	1376	PREDICTED: uncharacterized protein LOC10	0.624	0.078	0.590	1e-29
297850224	1376	ketose-bisphosphate aldolase class-II fa	0.653	0.082	0.584	4e-29
22329645	1373	ketose-bisphosphate aldolase class-II-li	0.641	0.080	0.603	9e-27
334182667	1393	ketose-bisphosphate aldolase class-II-li	0.641	0.079	0.603	1e-26
186478598	1374	ketose-bisphosphate aldolase class-II-li	0.641	0.080	0.598	2e-25
115467448	1376	Os06g0258900 [Oryza sativa Japonica Grou	0.612	0.077	0.458	4e-19
218197924	1376	hypothetical protein OsI_22435 [Oryza sa	0.612	0.077	0.458	4e-19
242092654	1379	hypothetical protein SORBIDRAFT_10g00936	0.618	0.077	0.460	7e-19

>gi|297734349|emb|CBI15596.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 94/116 (81%), Gaps = 2/116 (1%)

Query: 1   MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
           MAS   VGFVGLD+ S+++AASLIR+GY V+AFEI  PL+D F  LGG+R  +P++ GKD
Sbjct: 1   MASSGAVGFVGLDDLSLELAASLIRAGYAVKAFEIFGPLMDGFLKLGGVRCTTPLETGKD 60

Query: 59  VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL 114
           VSALVV+ISH DQI++IFF  EG L GL K AVII++STILP+++QKLEK  TGNL
Sbjct: 61  VSALVVLISHADQINNIFFSDEGALGGLAKNAVIIVRSTILPANIQKLEKRLTGNL 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491523|ref|XP_002278967.2| PREDICTED: uncharacterized protein LOC100262718 [Vitis vinifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 90/114 (78%), Gaps = 3/114 (2%)

Query: 1   MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
           MAS   VGFVGLD+ S+++AASLIR+GY V+AFEI  PL+D F  LGG+R  +P++ GK 
Sbjct: 1   MASSGAVGFVGLDDLSLELAASLIRAGYAVKAFEIFGPLMDGFLKLGGVRCTTPLETGKA 60

Query: 59  -VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
            VSALVV+ISH DQI++IFF  EG L GL K AVII++STILP+++QKLEK  T
Sbjct: 61  YVSALVVLISHADQINNIFFSDEGALGGLAKNAVIIVRSTILPANIQKLEKRLT 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522861|ref|XP_003530061.1| PREDICTED: uncharacterized protein LOC100779987 [Glycine max]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 86/110 (78%), Gaps = 2/110 (1%)

Query: 1   MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
           MAS+  +GFVGLDE S++MAA  IR GY VQAFEI+DP++++   LGG++  SP +AG+D
Sbjct: 1   MASRKAIGFVGLDELSLEMAAKAIRHGYDVQAFEINDPVIEELVKLGGVKCPSPSEAGRD 60

Query: 59  VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           VSALVV+ISHVDQ + + FG +G LK L+   V+IL+S ILPS +QKLEK
Sbjct: 61  VSALVVLISHVDQTNHLIFGEKGALKDLKSDTVLILRSNILPSFLQKLEK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850224|ref|XP_002892993.1| ketose-bisphosphate aldolase class-II family protein [Arabidopsis lyrata subsp. lyrata] gi|297338835|gb|EFH69252.1| ketose-bisphosphate aldolase class-II family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 83/113 (73%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M   VGFVGLD YS ++A+SL+RSG+KVQAFEIS  LV+KF  LGG +  SP D GK  +
Sbjct: 1   MGGVVGFVGLDSYSFELASSLLRSGFKVQAFEISTELVEKFTELGGHKCDSPADVGKGAA 60

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN 113
           A+VV++SH DQ+ D+ FG EGV+KGLQK  V++L STI    +QKLEK  T N
Sbjct: 61  AVVVLLSHPDQVQDVIFGDEGVMKGLQKDTVLLLSSTISTLQLQKLEKQLTEN 113

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329645|ref|NP_173263.2| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gi|18176246|gb|AAL60010.1| unknown protein [Arabidopsis thaliana] gi|22136930|gb|AAM91809.1| unknown protein [Arabidopsis thaliana] gi|332191573|gb|AEE29694.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 84/111 (75%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M+  VGFVGLD +S ++A+SL+RSG+KVQAFEIS  LV+KF  LGG +  SP D GK  +
Sbjct: 1   MSGVVGFVGLDSFSFELASSLLRSGFKVQAFEISTELVEKFIELGGHKCDSPADVGKAAA 60

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           A+VVV+SH DQI D+ FG EGV+KGLQK AV++L STI    +QKLEK  T
Sbjct: 61  AVVVVLSHPDQIQDVIFGDEGVMKGLQKDAVLLLSSTISTLQLQKLEKQLT 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182667|ref|NP_001185028.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gi|332191575|gb|AEE29696.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 84/111 (75%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M+  VGFVGLD +S ++A+SL+RSG+KVQAFEIS  LV+KF  LGG +  SP D GK  +
Sbjct: 1   MSGVVGFVGLDSFSFELASSLLRSGFKVQAFEISTELVEKFIELGGHKCDSPADVGKAAA 60

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           A+VVV+SH DQI D+ FG EGV+KGLQK AV++L STI    +QKLEK  T
Sbjct: 61  AVVVVLSHPDQIQDVIFGDEGVMKGLQKDAVLLLSSTISTLQLQKLEKQLT 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478598|ref|NP_001117303.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gi|332191574|gb|AEE29695.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 84/112 (75%), Gaps = 1/112 (0%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK-DV 59
           M+  VGFVGLD +S ++A+SL+RSG+KVQAFEIS  LV+KF  LGG +  SP D GK   
Sbjct: 1   MSGVVGFVGLDSFSFELASSLLRSGFKVQAFEISTELVEKFIELGGHKCDSPADVGKAAA 60

Query: 60  SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           +A+VVV+SH DQI D+ FG EGV+KGLQK AV++L STI    +QKLEK  T
Sbjct: 61  AAVVVVLSHPDQIQDVIFGDEGVMKGLQKDAVLLLSSTISTLQLQKLEKQLT 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115467448|ref|NP_001057323.1| Os06g0258900 [Oryza sativa Japonica Group] gi|52077150|dbj|BAD46196.1| putative fructose/tagatose bisphosphate aldolase [Oryza sativa Japonica Group] gi|113595363|dbj|BAF19237.1| Os06g0258900 [Oryza sativa Japonica Group] gi|215695410|dbj|BAG90601.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635346|gb|EEE65478.1| hypothetical protein OsJ_20876 [Oryza sativa Japonica Group]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 72/109 (66%), Gaps = 3/109 (2%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEIS--DPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           V FVG DE  V +AAS +RSG  V+ F     D        LGG+R ASP +A +D + L
Sbjct: 7   VSFVGADELGVSLAASFVRSGAIVRCFVAPGGDGSATALAELGGVRCASPAEAARD-AEL 65

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           V+V+S  D +D++FFG EG++KGL  GAV++++ST+LPSH++KL +   
Sbjct: 66  VIVLSDTDGVDELFFGPEGIVKGLCSGAVVLIRSTMLPSHLEKLNQKLA 114

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197924|gb|EEC80351.1| hypothetical protein OsI_22435 [Oryza sativa Indica Group]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 72/109 (66%), Gaps = 3/109 (2%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEIS--DPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           V FVG DE  V +AAS +RSG  V+ F     D        LGG+R ASP +A +D + L
Sbjct: 7   VSFVGADELGVSLAASFVRSGVIVRCFVAPGGDGSATALAELGGVRCASPAEAARD-AEL 65

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           V+V+S  D +D++FFG EG++KGL  GAV++++ST+LPSH++KL +   
Sbjct: 66  VIVLSDTDGVDELFFGPEGIVKGLCSGAVVLIRSTMLPSHLEKLNQKLA 114

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242092654|ref|XP_002436817.1| hypothetical protein SORBIDRAFT_10g009360 [Sorghum bicolor] gi|241915040|gb|EER88184.1| hypothetical protein SORBIDRAFT_10g009360 [Sorghum bicolor]

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 8/115 (6%)

Query: 2   ASKVGFVGLDEYSVDMAASLIRSGYKVQAF----EISDPLVDKFFMLGGI-RSASPMDAG 56
           A  V FVG DE SV++AAS +RSG +V++F    E S P       L G+ R  SP++A 
Sbjct: 5   AGPVAFVGADELSVELAASFLRSGARVRSFVPEAERSPPAA--LAELNGLLRCGSPVEAA 62

Query: 57  KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           +D +ALVVV+S    +D++FFG EG+ KGL+ G++I+++ST+LPS ++KLE+  T
Sbjct: 63  RD-AALVVVLSDAGAVDELFFGVEGIAKGLRAGSIILIRSTLLPSQLEKLEQKLT 116

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
UNIPROTKB|Q48PA9	301	PSPPH_0457 "3-hydroxyisobutyra	0.670	0.385	0.279	9.8e-11
UNIPROTKB|Q5ZLI9	333	HIBADH "Uncharacterized protei	0.624	0.324	0.336	2.2e-10
TIGR_CMR|SPO_2560	299	SPO_2560 "2-hydroxy-3-oxopropi	0.618	0.357	0.277	4.5e-10
ASPGD|ASPL0000044129	434	AN2335 [Emericella nidulans (t	0.589	0.235	0.303	5.1e-10
RGD|708399	335	Hibadh "3-hydroxyisobutyrate d	0.618	0.319	0.324	1.7e-09
UNIPROTKB|G4NKB0	444	MGG_03097 "Oxidoreductase" [Ma	0.624	0.243	0.306	3e-09
UNIPROTKB|Q2KEY5	558	MGCH7_ch7g901 "Putative unchar	0.624	0.193	0.306	4.4e-09
ZFIN|ZDB-GENE-040426-1582	329	hibadhb "3-hydroxyisobutyrate	0.583	0.306	0.330	1.6e-08
MGI|MGI:1889802	335	Hibadh "3-hydroxyisobutyrate d	0.624	0.322	0.290	1.7e-08
UNIPROTKB|J9P680	174	J9P680 "Uncharacterized protei	0.618	0.614	0.297	4.2e-08

UNIPROTKB|Q48PA9 PSPPH_0457 "3-hydroxyisobutyrate dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 154 (59.3 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 33/118 (27%), Positives = 61/118 (51%)

Query:     1 MASK-VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDV 59
             M +K VG +GL    + +A SL+RSG+ V A ++   + + F   GG+   SP       
Sbjct:     1 MTNKNVGVIGLGAMGLGIARSLLRSGFTVHACDVRSSVTEAFAQEGGVACQSPASMAAAC 60

Query:    60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL-EKTFTGNLTF 116
               ++ V+ + +Q + + FG  G +  L+ G ++I  +T+ P+   +L E+    NL +
Sbjct:    61 DVIITVVVNAEQTETVLFGENGAIAALRPGCLVIGCATVAPTFAVELGERLAAQNLLY 118

GO:0008152 "metabolic process" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS

UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 37/110 (33%), Positives = 61/110 (55%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MASK  VGF+GL      MA +LI+ GY V A+++      +F  LG   + SP D  + 
Sbjct:    33 MASKTPVGFIGLGNMGNPMAKNLIKHGYPVIAYDVFPEACKEFQDLGAQVTDSPADVAER 92

Query:    59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                ++ ++       +++ G  G+LK ++KG+++I  STI PS  ++L K
Sbjct:    93 ADRIITMLPSSPNAIEVYTGANGILKKVKKGSLLIDSSTIDPSVSKELAK 142

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|SPO_2560 SPO_2560 "2-hydroxy-3-oxopropionate reductase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 148 (57.2 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 30/108 (27%), Positives = 61/108 (56%)

Query:     1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
             M+  +   GL      MA S +R+G  V  F++    V +F   GG  +A+  +  + + 
Sbjct:     1 MSMNIAVFGLGSMGYGMAQSCLRAGIGVHGFDVVAEQVARFVKEGG-SAAAFAEVARSLD 59

Query:    61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
             A+VVV+ +  Q++ + FG +GV+  +++GAV++  +T+ P   +++E+
Sbjct:    60 AVVVVVLNAAQVEQVLFGEDGVVTQMREGAVVLACATVPPEFAKEMER 107

GO:0008679 "2-hydroxy-3-oxopropionate reductase activity" evidence=ISS

GO:0046393 "D-galactarate metabolic process" evidence=ISS

ASPGD|ASPL0000044129 AN2335 [Emericella nidulans (taxid:162425)]

 Score = 151 (58.2 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 31/102 (30%), Positives = 56/102 (54%)

Query:     5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
             +GFVGL      MA  L++ GY V  F++    V++F   GGI ++S  ++ +  S  VV
Sbjct:     6 IGFVGLGAMGFGMATHLVKQGYPVHGFDVFPASVERFKAAGGIPASSLRESAEGKSYYVV 65

Query:    65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
             +++   Q   + F  +G+++ L   AV++L ST+   + Q +
Sbjct:    66 MVASSPQAQSVLFAEDGIVQHLPPNAVLMLCSTVSSMYAQSV 107

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 36/111 (32%), Positives = 65/111 (58%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MASK  VGF+GL      MA +LI+ GY +  +++   +  +F   G   ++SP D  + 
Sbjct:    35 MASKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEK 94

Query:    59 VSALVVVI-SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                ++ ++ S ++ I+ ++ G  G+LK ++KG+++I  STI PS  ++L K
Sbjct:    95 ADRIITMLPSSMNSIE-VYSGANGILKKVKKGSLLIDSSTIDPSVSKELAK 144

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006574 "valine catabolic process" evidence=ISO;ISS

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=ISO;ISS

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|G4NKB0 MGG_03097 "Oxidoreductase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 34/111 (30%), Positives = 58/111 (52%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MA+K  + F+GL      MA  LI+ GY V  F++  P +D+F   GG  +++P  A  D
Sbjct:     1 MAAKEPISFIGLGAMGFGMATHLIKEGYSVTGFDVWGPTLDRFKAAGGSAASTPAQAVAD 60

Query:    59 VSALVVVISHVDQIDDIFF-GHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                 V +++   Q   +   G +  +  L +GAV++L ST+   + Q L++
Sbjct:    61 KPFCVCMVATAQQAQAVLIDGPDAAVPALPQGAVLMLCSTVPCQYAQALDQ 111

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2KEY5 MGCH7_ch7g901 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 34/111 (30%), Positives = 58/111 (52%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MA+K  + F+GL      MA  LI+ GY V  F++  P +D+F   GG  +++P  A  D
Sbjct:     1 MAAKEPISFIGLGAMGFGMATHLIKEGYSVTGFDVWGPTLDRFKAAGGSAASTPAQAVAD 60

Query:    59 VSALVVVISHVDQIDDIFF-GHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                 V +++   Q   +   G +  +  L +GAV++L ST+   + Q L++
Sbjct:    61 KPFCVCMVATAQQAQAVLIDGPDAAVPALPQGAVLMLCSTVPCQYAQALDQ 111

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 34/103 (33%), Positives = 54/103 (52%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MASK  VGF+GL      MA +LI+ GY V A ++      +   LG     SP D    
Sbjct:    29 MASKTQVGFIGLGNMGNPMAKNLIKHGYPVIATDVFPESCKELQELGAQILDSPADVADK 88

Query:    59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPS 101
                ++ ++     + D++ G  G+LK ++KG+++I  STI P+
Sbjct:    89 ADRIITMLPSNPNVVDVYTGPNGILKKVKKGSLLIDSSTIDPA 131

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 32/110 (29%), Positives = 61/110 (55%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MASK  VGF+GL      MA +L++ GY +  +++   +  +F   G   ++SP +  + 
Sbjct:    35 MASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEK 94

Query:    59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                ++ ++       +++ G  G+LK ++KG+++I  STI PS  ++L K
Sbjct:    95 ADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAK 144

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0006574 "valine catabolic process" evidence=ISO

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|J9P680 J9P680 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 33/111 (29%), Positives = 62/111 (55%)

Query:     1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
             MASK  VGF GL      MA +L++ GY +  +++   +  +F   G    +SP D  + 
Sbjct:    36 MASKTPVGFTGLGNMGNPMAKNLMKHGYPLIIYDVFPDVCKEFQDAGEQVVSSPADVAEK 95

Query:    59 VSALVVVI-SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                ++ ++ + ++ I+  + G  G+LK ++KG+++I  STI P+  ++L K
Sbjct:    96 ADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 145

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	3e-48
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	1e-21
PRK15461	296	PRK15461, PRK15461, NADH-dependent gamma-hydroxybu	2e-14
pfam03446	163	pfam03446, NAD_binding_2, NAD binding domain of 6-	2e-12
TIGR01505	291	TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona	6e-12
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	1e-10
PRK11559	296	PRK11559, garR, tartronate semialdehyde reductase;	2e-10
TIGR01692	288	TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen	1e-09
PRK15059	292	PRK15059, PRK15059, tartronate semialdehyde reduct	4e-08

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score =  166 bits (423), Expect = 3e-48
 Identities = 72/111 (64%), Positives = 88/111 (79%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
            A  VGFVGLD  S ++A+SL+RSG+KVQAFEIS PL++KF  LGG R  SP +A KD +
Sbjct: 3   SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAA 62

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
           ALVVV+SH DQ+DD+FFG EG  KGLQKGAVI+++STILP  +QKLEK  T
Sbjct: 63  ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLT 113

Length = 1378

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score = 90.7 bits (225), Expect = 1e-21
 Identities = 34/107 (31%), Positives = 62/107 (57%)

Query: 2   ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSA 61
             ++GF+GL      MA+ L++S + V  +++  P + +F   GG+   SP +  KDV  
Sbjct: 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDV 383

Query: 62  LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           LV+++++  Q +++ FG  G +  L  GA I+L ST+ P  + +LE+
Sbjct: 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLER 430

Length = 1378

>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 31/104 (29%), Positives = 57/104 (54%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           + + F+GL +    MA++L++ G+++Q F+++   VD     G   +ASP  A      +
Sbjct: 2   AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFV 61

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           + ++ + D +  + FG  GV +GL + A++I  STI P    KL
Sbjct: 62  ITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKL 105

Length = 296

>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase

 Score = 60.9 bits (149), Expect = 2e-12
 Identities = 29/106 (27%), Positives = 55/106 (51%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           +K+GF+GL      MA +L+++GY V  +  +   V++    G + +ASP +       +
Sbjct: 1   AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           + ++     +D +  G +G+L GL+ G +II  ST  P   ++  K
Sbjct: 61  ITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAK 106

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163

>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 22/97 (22%), Positives = 49/97 (50%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           KVGF+GL      M+ +L ++GY++    I   + D+    G + + +     +    + 
Sbjct: 1   KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP 100
            ++    Q++++ FG  G+++G + G  ++  S+I P
Sbjct: 61  TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISP 97

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKFFMLGGIRSASPMDAGKDVSA 61
            K+ F+GL      MAA+L+++G++V  +  + +   +     G   +ASP +A  +   
Sbjct: 1   MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60

Query: 62  LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           ++ ++     +  + FG  G+L+GL+ GA++I  STI P   ++L
Sbjct: 61  VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETAREL 105

Length = 286

>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 22/100 (22%), Positives = 51/100 (51%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M  KVGF+GL      M+ +L+++GY +  ++ +   V +    G   +++     +   
Sbjct: 1   MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCD 60

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP 100
            ++ ++ +   + ++  G  G+++G + G V+I  S+I P
Sbjct: 61  VIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAP 100

Length = 296

>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 29/102 (28%), Positives = 57/102 (55%)

Query: 7   FVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVI 66
           F+GL      MAA+L+++G+ V+ F++    V++    G   +ASP +A +    ++ ++
Sbjct: 1   FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60

Query: 67  SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
                +  ++ G EG+L  + KG+++I  STI P   +KL +
Sbjct: 61  PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE 102

3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288

>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+GF+GL      MA +L R+G+++    I  P+ D+   LG +   +     +    + 
Sbjct: 2   KLGFIGLGIMGTPMAINLARAGHQLHVTTIG-PVADELLSLGAVSVETARQVTEASDIIF 60

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           +++    Q++++ FG  G  K   KG  I+  S+I P   ++  +
Sbjct: 61  IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR 105

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	100.0
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	100.0
KOG0409	327	consensus Predicted dehydrogenase [General functio	100.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.97
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.97
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.97
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.97
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.96
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.96
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.96
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.96
PLN02858	1378	fructose-bisphosphate aldolase	99.96
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.95
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.95
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.95
PLN02858	1378	fructose-bisphosphate aldolase	99.95
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.95
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.94
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.93
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.93
PLN02688	266	pyrroline-5-carboxylate reductase	99.92
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.91
PRK07680	273	late competence protein ComER; Validated	99.89
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.88
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.86
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.86
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.85
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.84
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.83
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.83
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.83
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.82
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.81
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.79
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.79
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.78
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.78
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.78
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.78
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.77
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.77
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.76
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.76
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.76
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.76
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.76
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.74
PRK07417	279	arogenate dehydrogenase; Reviewed	99.73
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	99.73
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.72
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.72
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.72
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	99.71
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.71
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.7
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.7
PRK08507	275	prephenate dehydrogenase; Validated	99.69
PRK08655	437	prephenate dehydrogenase; Provisional	99.69
PRK06545	359	prephenate dehydrogenase; Validated	99.68
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.66
PLN02256	304	arogenate dehydrogenase	99.65
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.64
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.64
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.63
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.62
PRK07574	385	formate dehydrogenase; Provisional	99.6
PLN03139	386	formate dehydrogenase; Provisional	99.58
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.58
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.58
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.58
PLN02712	667	arogenate dehydrogenase	99.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.57
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.56
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.56
PRK13243	333	glyoxylate reductase; Reviewed	99.55
PRK12480	330	D-lactate dehydrogenase; Provisional	99.54
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.54
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.53
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.53
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.53
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.52
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.51
PRK06436	303	glycerate dehydrogenase; Provisional	99.51
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.49
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.49
PLN02712	667	arogenate dehydrogenase	99.49
PRK08605	332	D-lactate dehydrogenase; Validated	99.48
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.48
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.48
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.46
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.46
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.46
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.45
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.44
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.44
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.43
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.42
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.42
PLN02928	347	oxidoreductase family protein	99.4
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.39
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.38
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.38
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.37
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.37
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.36
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.36
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.36
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.36
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.35
PRK08818	370	prephenate dehydrogenase; Provisional	99.34
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.34
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.33
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.31
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.3
PRK06487	317	glycerate dehydrogenase; Provisional	99.29
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.29
PRK06932	314	glycerate dehydrogenase; Provisional	99.28
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	99.27
PLN02306	386	hydroxypyruvate reductase	99.27
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.25
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.25
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.23
PRK06141	314	ornithine cyclodeaminase; Validated	99.19
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.16
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.15
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.14
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.13
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.09
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.07
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.07
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.0
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.98
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.98
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.97
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.96
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.95
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.94
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.93
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.91
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.9
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.88
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	98.88
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.86
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.85
PRK07340	304	ornithine cyclodeaminase; Validated	98.84
PLN02494	477	adenosylhomocysteinase	98.84
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.83
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.83
PRK05225	487	ketol-acid reductoisomerase; Validated	98.82
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.79
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.79
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.78
PRK06407	301	ornithine cyclodeaminase; Provisional	98.78
PRK06823	315	ornithine cyclodeaminase; Validated	98.78
PRK08618	325	ornithine cyclodeaminase; Validated	98.76
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.75
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.74
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.74
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.74
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	98.73
PRK10206	344	putative oxidoreductase; Provisional	98.72
PRK11579	346	putative oxidoreductase; Provisional	98.69
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	98.68
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.67
PRK06046	326	alanine dehydrogenase; Validated	98.67
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.66
PRK06223	307	malate dehydrogenase; Reviewed	98.65
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.65
PRK07589	346	ornithine cyclodeaminase; Validated	98.64
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.62
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.62
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.62
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.61
PRK08291	330	ectoine utilization protein EutC; Validated	98.58
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.56
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.56
PRK06444	197	prephenate dehydrogenase; Provisional	98.55
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.54
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	98.53
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.53
PRK06199	379	ornithine cyclodeaminase; Validated	98.53
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.51
PLN00203	519	glutamyl-tRNA reductase	98.51
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.47
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.44
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.43
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.42
PTZ00117	319	malate dehydrogenase; Provisional	98.41
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.41
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.41
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.4
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	98.4
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.39
PRK04148	134	hypothetical protein; Provisional	98.39
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.39
PRK10669	558	putative cation:proton antiport protein; Provision	98.38
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	98.38
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.36
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.36
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.35
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.35
PRK03659	601	glutathione-regulated potassium-efflux system prot	98.33
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	98.32
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.32
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.31
PRK06270	341	homoserine dehydrogenase; Provisional	98.31
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.31
PRK06349	426	homoserine dehydrogenase; Provisional	98.3
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	98.29
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.29
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	98.29
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.28
PRK09496	453	trkA potassium transporter peripheral membrane com	98.28
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	98.26
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.26
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.26
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.26
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.25
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	98.24
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.24
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.23
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.22
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	98.16
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.16
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.12
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.11
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.1
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	98.08
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.06
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	98.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.03
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	98.02
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	98.01
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.0
PRK06719	157	precorrin-2 dehydrogenase; Validated	98.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.97
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.95
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.91
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.91
PRK08374	336	homoserine dehydrogenase; Provisional	97.91
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.9
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.89
PRK14982	340	acyl-ACP reductase; Provisional	97.89
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK09496	453	trkA potassium transporter peripheral membrane com	97.88
PRK15076	431	alpha-galactosidase; Provisional	97.87
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.86
PLN02602	350	lactate dehydrogenase	97.85
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.85
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.84
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.83
PLN02477	410	glutamate dehydrogenase	97.82
CHL00194	317	ycf39 Ycf39; Provisional	97.81
COG2910	211	Putative NADH-flavin reductase [General function p	97.81
PRK09414	445	glutamate dehydrogenase; Provisional	97.81
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.78
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.77
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.77
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	97.75
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.73
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.71
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	97.7
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.7
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.68
PRK14030	445	glutamate dehydrogenase; Provisional	97.67
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.67
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.67
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.66
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.65
PRK06392	326	homoserine dehydrogenase; Provisional	97.64
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.63
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.63
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.62
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.62
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.61
PRK14031	444	glutamate dehydrogenase; Provisional	97.61
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	97.61
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.6
PRK05086	312	malate dehydrogenase; Provisional	97.6
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.6
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	97.59
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.58
PRK05442	326	malate dehydrogenase; Provisional	97.57
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.57
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.53
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.53
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.52
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.52
COG2344	211	AT-rich DNA-binding protein [General function pred	97.51
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.51
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.5
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.5
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.5
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.5
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.49
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.49
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.49
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.49
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.49
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	97.47
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.47
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.47
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.46
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.46
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.45
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.44
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.44
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.43
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.43
PLN00106	323	malate dehydrogenase	97.43
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.42
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.42
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.41
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.41
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.41
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.41
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.41
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.4
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.4
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.37
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.37
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.36
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	97.36
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.34
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.34
PTZ00325	321	malate dehydrogenase; Provisional	97.33
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.32
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	97.32
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	97.32
PLN02383	344	aspartate semialdehyde dehydrogenase	97.3
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.29
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.28
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.25
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.25
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.25
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.24
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.24
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.23
PRK08017	256	oxidoreductase; Provisional	97.22
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.22
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.22
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.18
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.18
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.17
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	97.16
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.15
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	97.15
PRK08328	231	hypothetical protein; Provisional	97.14
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.11
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.11
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.1
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.07
PLN00016	378	RNA-binding protein; Provisional	97.07
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.05
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.04
PRK08223	287	hypothetical protein; Validated	97.03
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.01
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	97.01
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	97.01
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	97.01
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
PRK06813	346	homoserine dehydrogenase; Validated	97.0
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.99
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.99
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.98
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	96.97
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.97
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.97
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.96
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.95
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.94
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.94
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.94
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.93
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.92
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.91
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.91
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.91
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.9
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.9
PLN02427	386	UDP-apiose/xylose synthase	96.9
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.89
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.89
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	96.89
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.88
COG5495	289	Uncharacterized conserved protein [Function unknow	96.87
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.85
PRK05993	277	short chain dehydrogenase; Provisional	96.84
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.83
PRK07024	257	short chain dehydrogenase; Provisional	96.83
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.83
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.83
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.82
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.81
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	96.81
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.8
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	96.8
PRK09291	257	short chain dehydrogenase; Provisional	96.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.8
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.79
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.79
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.79
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.78
PLN03209	576	translocon at the inner envelope of chloroplast su	96.77
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.77
PRK10537	393	voltage-gated potassium channel; Provisional	96.76
PRK06182	273	short chain dehydrogenase; Validated	96.75
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.74
PRK07326	237	short chain dehydrogenase; Provisional	96.74
PLN02214	342	cinnamoyl-CoA reductase	96.72
PRK10637	457	cysG siroheme synthase; Provisional	96.72
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.72
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.71
PRK07074	257	short chain dehydrogenase; Provisional	96.7
PLN02740	381	Alcohol dehydrogenase-like	96.7
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.69
PRK08163	396	salicylate hydroxylase; Provisional	96.68
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	96.66
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.66
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.65
PRK06482	276	short chain dehydrogenase; Provisional	96.65
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.64
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.64
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.63
PRK07454	241	short chain dehydrogenase; Provisional	96.63
PRK06180	277	short chain dehydrogenase; Provisional	96.63
PRK08643	256	acetoin reductase; Validated	96.62
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.62
PRK05865	854	hypothetical protein; Provisional	96.62
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	96.6
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.6
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	96.6
PRK10538	248	malonic semialdehyde reductase; Provisional	96.59
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	96.58
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.57
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.57
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.55
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	96.54
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.53
PRK05868	372	hypothetical protein; Validated	96.53
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.53
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.52
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.51
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.51
PRK07774	250	short chain dehydrogenase; Provisional	96.51
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.51
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.51
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.5
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	96.5
PRK07236	386	hypothetical protein; Provisional	96.49
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.49
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.49
PRK05693	274	short chain dehydrogenase; Provisional	96.48
PRK06753	373	hypothetical protein; Provisional	96.48
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.48
PRK11728	393	hydroxyglutarate oxidase; Provisional	96.48
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.48
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.47
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.47
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.47
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.45
COG3804	350	Uncharacterized conserved protein related to dihyd	96.45
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.45
PRK07890	258	short chain dehydrogenase; Provisional	96.44
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.43
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.41
PLN02650	351	dihydroflavonol-4-reductase	96.4
PRK12320	699	hypothetical protein; Provisional	96.39
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.39
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.39
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.39
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.39
PRK05866	293	short chain dehydrogenase; Provisional	96.38
PRK08219	227	short chain dehydrogenase; Provisional	96.38
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	96.37
PRK07411	390	hypothetical protein; Validated	96.37
PLN02686	367	cinnamoyl-CoA reductase	96.37
PRK06139	330	short chain dehydrogenase; Provisional	96.35
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.35
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.34
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.34
PRK06475	400	salicylate hydroxylase; Provisional	96.34
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.33
PRK12939	250	short chain dehydrogenase; Provisional	96.3
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	96.3
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	96.3
PRK14851	679	hypothetical protein; Provisional	96.29
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.28
PRK07109	334	short chain dehydrogenase; Provisional	96.28
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.27

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=4.8e-36  Score=229.95  Aligned_cols=167  Identities=21%  Similarity=0.335  Sum_probs=155.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +||+|||+|.||.+||++|.++||+|++|||++++ .+.+.+.|.....++.++++++|+||+|+|++++++++++++++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            58999999999999999999999999999999999 66667779999999999999999999999999999999998889


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.+++|+++||+||++|...+++.+.++++|.+|++++             ++++||+++.+++++|+|+.+|. +.+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~  160 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH  160 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence            9999999999999999999999999999999999999875             88999999999999999999997 789


Q ss_pred             ecCCCchHhHhHHhHhhhHhhhh
Q 044797          148 VNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +|+.|+|.+ .++++|.++-...
T Consensus       161 ~G~~G~G~~-~Kl~nn~l~~~~~  182 (286)
T COG2084         161 VGPVGAGQA-AKLANNILLAGNI  182 (286)
T ss_pred             ECCCCchHH-HHHHHHHHHHHHH
Confidence            999999987 6788988876544

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=100.00  E-value=4.7e-33  Score=200.04  Aligned_cols=148  Identities=22%  Similarity=0.414  Sum_probs=129.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |+||||||+|.||++|+++|.++|++|++|||++++.+++.+.|++.++++.++++++|+|++|+|++.++++++++++ 
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-   79 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-   79 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999997655 


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCcee-
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFIDKK-  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~~~-  147 (173)
                      +.+.+++|++|+|+||.+|.+.+++.+.++++|++|++.+             +++++|+++.+++++|+|+.+|..++ 
T Consensus        80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~  159 (163)
T PF03446_consen   80 ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYH  159 (163)
T ss_dssp             HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCcee
Confidence            8899999999999999999999999999999999999875             78899999999999999999997443 


Q ss_pred             -ecC
Q 044797          148 -VNI  150 (173)
Q Consensus       148 -~g~  150 (173)
                       +|+
T Consensus       160 ~~G~  163 (163)
T PF03446_consen  160 YVGP  163 (163)
T ss_dssp             E-ES
T ss_pred             eeCc
Confidence             464

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=207.37  Aligned_cols=166  Identities=20%  Similarity=0.326  Sum_probs=155.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||.+|+.+|+++||+|++|||+.++.+.+.+.|.++.+++.|+++.+|+||.++|++.+++++++++.++
T Consensus        36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv  115 (327)
T KOG0409|consen   36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV  115 (327)
T ss_pred             ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             hhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhC-Ccee
Q 044797           83 LKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFF-IDKK  147 (173)
Q Consensus        83 ~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g-~~~~  147 (173)
                      .+.+++++.. ||.||++|.+..++.+.++..+.+|++++             +++.+|+++.++.+.++++.+| .+.|
T Consensus       116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~  195 (327)
T KOG0409|consen  116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF  195 (327)
T ss_pred             eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence            9999999888 89999999999999999999999999875             8889999999999999999999 5789


Q ss_pred             ecCCCchHhHhHHhHhhhHhhh
Q 044797          148 VNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      +|..|+|.+ .++++|.++...
T Consensus       196 ~G~~GnG~~-~Kl~nnm~~g~~  216 (327)
T KOG0409|consen  196 LGGVGNGQA-AKLCNNMLLGSS  216 (327)
T ss_pred             ecccCchHH-HHHHHHHHHHHH
Confidence            999999987 568777766543

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.97  E-value=2.3e-30  Score=212.53  Aligned_cols=166  Identities=12%  Similarity=0.170  Sum_probs=148.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCc---eecChhhhhcC---CCEEEEeccChhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGI---RSASPMDAGKD---VSALVVVISHVDQ   71 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~~---~dvii~~v~~~~~   71 (173)
                      +++|||||+|.||.+||++|+++|++|++|||++++.+.+.+.    |..   .+.+++++++.   +|+||+|+|++.+
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a   85 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP   85 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence            3689999999999999999999999999999999999988763    543   57788998876   9999999999999


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHH
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVK  139 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~  139 (173)
                      +++++   +++.+.+.+|+++||+||++|.+++++.+.++++|++|++.+            ++++||++++++.++|+|
T Consensus        86 V~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL  162 (493)
T PLN02350         86 VDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDIL  162 (493)
T ss_pred             HHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHH
Confidence            99998   578899999999999999999999999999999999999864            789999999999999999


Q ss_pred             HhhCC-------ceeecCCCchHhHhHHhHhhhHhhhhc
Q 044797          140 NEFFI-------DKKVNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       140 ~~~g~-------~~~~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      +.++.       +.|+|+.|+| +|++++.|.+.-+++.
T Consensus       163 ~~ia~k~~~~~~v~~vG~~GaG-~~vKlv~N~i~~~~m~  200 (493)
T PLN02350        163 EKVAAQVDDGPCVTYIGPGGAG-NFVKMVHNGIEYGDMQ  200 (493)
T ss_pred             HHHhhhcCCCCcEEEeCCcCHH-HHHHHHHHHHHHHHHH
Confidence            99983       6899999998 5578989887766543

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.97  E-value=7.7e-30  Score=199.32  Aligned_cols=166  Identities=22%  Similarity=0.327  Sum_probs=149.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +||+|||+|+||.+|+++|.++|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+++.++.+.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            58999999999999999999999999999999999999988888888889999999999999999887889998765677


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKV  148 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~  148 (173)
                      .+.++++++++|+||++|.+.+++.+.+.++|+.|++.+             ++++||+++.++.++|+|+.+|. +.|+
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~  161 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA  161 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence            788899999999999999999999999999999998864             57889999999999999999995 6789


Q ss_pred             cCCCchHhHhHHhHhhhHhhh
Q 044797          149 NISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       149 g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      |..|+|.++ ++++|++..++
T Consensus       162 g~~G~g~~~-Kl~~N~~~~~~  181 (296)
T PRK15461        162 GGPGMGIRV-KLINNYMSIAL  181 (296)
T ss_pred             CCCCHHHHH-HHHHHHHHHHH
Confidence            999999885 57788776544

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.97  E-value=9.9e-30  Score=198.16  Aligned_cols=165  Identities=18%  Similarity=0.282  Sum_probs=147.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      |||+|||+|+||.+|+++|.++|++|++|||++. .+++.+.|+..+.++.++++++|+||+|+|++.++++++++++++
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            3899999999999999999999999999999975 566777788888899999999999999999988999998766667


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKV  148 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~  148 (173)
                      .+.+++|++++|+||.+|.+.+++.+.+.++|+.|++++             .++++|+++.+++++|+|+.+|. ..|+
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~  159 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV  159 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence            778899999999999999999999999999999999864             67889999999999999999995 6899


Q ss_pred             cCCCchHhHhHHhHhhhHhhh
Q 044797          149 NISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       149 g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      |..|+|..+ ++++|+++.+.
T Consensus       160 G~~G~g~~~-Kl~~N~l~~~~  179 (292)
T PRK15059        160 GGNGDGQTC-KVANQIIVALN  179 (292)
T ss_pred             CCccHHHHH-HHHHHHHHHHH
Confidence            999999885 68888887543

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.97  E-value=1.2e-28  Score=192.92  Aligned_cols=164  Identities=14%  Similarity=0.123  Sum_probs=146.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcC---CCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD---VSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |+|||||+|+||.+|+++|.++|++|++|||++++.+.+.+.|...+.++++++++   +|+|++|+|++.++++++   
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~---   77 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI---   77 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence            48999999999999999999999999999999999999888888888889988765   699999999877888888   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI---  144 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~---  144 (173)
                      +++.+.+++|++++|+||++|.+.+++.+.+.++|++|++++            +++++|++++++.++|+|+.+|.   
T Consensus        78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~  157 (299)
T PRK12490         78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEGP  157 (299)
T ss_pred             HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCcCC
Confidence            467788899999999999999999999999999999999853            67899999999999999999995   


Q ss_pred             -ceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          145 -DKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       145 -~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                       ..|+|..|+|.. .++++|+++-++.
T Consensus       158 ~~~~~G~~g~a~~-~Kl~~n~~~~~~~  183 (299)
T PRK12490        158 GYVHAGPVGSGHF-LKMVHNGIEYGMM  183 (299)
T ss_pred             cEEEECCcCHHHH-HHHHHHHHHHHHH
Confidence             689999999966 5788888776544

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.96  E-value=2.9e-28  Score=199.81  Aligned_cols=166  Identities=13%  Similarity=0.154  Sum_probs=147.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C--CceecChhhhhc---CCCEEEEeccChhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G--GIRSASPMDAGK---DVSALVVVISHVDQI   72 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~---~~dvii~~v~~~~~~   72 (173)
                      |.+|||||+|.||.+||++|+++|++|++|||++++.+.+.+.    |  +..+++++++++   ++|+|++++|+++.+
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            3589999999999999999999999999999999999888764    4  346778888886   489999999988999


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHH
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKN  140 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~  140 (173)
                      ++++   +++.+.+.+|++|||++++.+.++.++.+.+.++|++|++.+            ++++||++++++.++|+|+
T Consensus        81 ~~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~  157 (470)
T PTZ00142         81 DETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILE  157 (470)
T ss_pred             HHHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHH
Confidence            9998   578899999999999999999999999999999999999864            8899999999999999999


Q ss_pred             hhCC-------ceeecCCCchHhHhHHhHhhhHhhhhc
Q 044797          141 EFFI-------DKKVNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       141 ~~g~-------~~~~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      .++.       ..|+|+.|+| +|++++.|.+.-++++
T Consensus       158 ~ia~~~~~~~~~~~~G~~GaG-h~vKmvhN~ie~~~m~  194 (470)
T PTZ00142        158 KCSAKVGDSPCVTYVGPGSSG-HYVKMVHNGIEYGDMQ  194 (470)
T ss_pred             HHhhhcCCCCeEEEECCCCHH-HHHHHHhHHHHHHHHH
Confidence            9985       3799999999 6688988887666553

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.96  E-value=6.5e-28  Score=188.91  Aligned_cols=163  Identities=13%  Similarity=0.115  Sum_probs=145.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcC---CCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD---VSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |||||||+|.||.+|+++|+++|++|++|||++++.+.+.+.|+...++++++++.   +|+|++++|++.++++++   
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~---   77 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI---   77 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence            48999999999999999999999999999999999999988898888889888775   699999999876788887   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI---  144 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~---  144 (173)
                      +++.+.++++++++|+||++|.+.+++.+.++++|++|++.+            +++++|++++++.++|+++.++.   
T Consensus        78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~  157 (301)
T PRK09599         78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAE  157 (301)
T ss_pred             HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccccc
Confidence            467788899999999999999999999999999999999864            67789999999999999999997   


Q ss_pred             --ceeecCCCchHhHhHHhHhhhHhhh
Q 044797          145 --DKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       145 --~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                        +.|+|+.|+|.. .++++|.+.-++
T Consensus       158 ~~~~~~G~~G~g~~-~Kl~~n~l~~~~  183 (301)
T PRK09599        158 DGYLHAGPVGAGHF-VKMVHNGIEYGM  183 (301)
T ss_pred             CCeEeECCCcHHHH-HHHHHHHHHHHH
Confidence              579999999966 568888766554

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.96  E-value=7.6e-28  Score=187.46  Aligned_cols=161  Identities=21%  Similarity=0.325  Sum_probs=146.1

Q ss_pred             EEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcC
Q 044797            7 FVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGL   86 (173)
Q Consensus         7 iiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l   86 (173)
                      |||+|.||.+|+++|.++|++|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.+++.++++++++.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999999999999988888888999999999999999998788899987666788889


Q ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceeecCCC
Q 044797           87 QKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKVNISG  152 (173)
Q Consensus        87 ~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~g~~G  152 (173)
                      +++++++++||++|.+.+++.+.+.++|++|++.+             .++++|+++.+++++++|+.+|. +.|+|..|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g  160 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG  160 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence            99999999999999999999999999999999864             66789999999999999999995 78999999


Q ss_pred             chHhHhHHhHhhhHhh
Q 044797          153 QEIHWGYLKINYFIRV  168 (173)
Q Consensus       153 sg~a~~~~~~~~~~~~  168 (173)
                      +|.+ .++++|+++-.
T Consensus       161 ~g~~-~Kl~~n~~~~~  175 (288)
T TIGR01692       161 AGQA-AKICNNMLLGI  175 (288)
T ss_pred             HHHH-HHHHHHHHHHH
Confidence            9988 56888886554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.96  E-value=1.7e-27  Score=186.06  Aligned_cols=167  Identities=15%  Similarity=0.298  Sum_probs=147.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |+++|+|||+|.||.+++++|.+.|++|.+|||++++.+.+.+.|+..+++++++++++|+||+|+|++.+++.+++..+
T Consensus         1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~   80 (296)
T PRK11559          1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGEN   80 (296)
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcc
Confidence            88999999999999999999999999999999999999988888888888899999999999999998888888876555


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ce
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DK  146 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~  146 (173)
                      ++.+.++++++|+|+|+..|.+.+++.+.+.++|++|++.+             .++++|+++.++.++++++.+|. ..
T Consensus        81 ~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~  160 (296)
T PRK11559         81 GIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV  160 (296)
T ss_pred             hHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence            67788899999999999999999999999988899998754             56788999999999999999985 67


Q ss_pred             eecCCCchHhHhHHhHhhhHhh
Q 044797          147 KVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       147 ~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                      ++|..|+|.+ .++++|.++-.
T Consensus       161 ~~g~~g~a~~-~Kl~~n~~~~~  181 (296)
T PRK11559        161 HTGDIGAGNV-TKLANQVIVAL  181 (296)
T ss_pred             EeCCcCHHHH-HHHHHHHHHHH
Confidence            8999999876 45677765543

>PLN02858 fructose-bisphosphate aldolase

Probab=99.96  E-value=4.8e-28  Score=218.17  Aligned_cols=166  Identities=46%  Similarity=0.668  Sum_probs=152.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||.+||++|+++|++|++|||++++.+++.+.|+..++++.+++++||+||+|+|++.++++++++++++
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~   84 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA   84 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999877788


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC--ceeeece-------------eeeeecCHhhHHHHHHHHHhhCCce-
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNL--TFYILER-------------MFLISSSIDCFTYLFLVKNEFFIDK-  146 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g--~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~~-  146 (173)
                      .+.+++|++++|+||++|.+.+++.+.+.++|  +.|++++             ++++||+++.+++++|+|+.+|... 
T Consensus        85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~  164 (1378)
T PLN02858         85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY  164 (1378)
T ss_pred             HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence            88999999999999999999999999999999  8999865             7789999999999999999999744 


Q ss_pred             e-ecCCCchHhHhHHhHhhhHhhh
Q 044797          147 K-VNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       147 ~-~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      + +|+.|+|.+ .++++|++.-+.
T Consensus       165 ~~~G~~G~g~~-~KL~nN~l~~~~  187 (1378)
T PLN02858        165 TFEGEIGAGSK-VKMVNELLEGIH  187 (1378)
T ss_pred             EecCCCCHhHH-HHHHHHHHHHHH
Confidence            4 499999988 568899877543

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.95  E-value=2.5e-27  Score=194.30  Aligned_cols=164  Identities=13%  Similarity=0.202  Sum_probs=143.9

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc---C--CceecChhhhh---cCCCEEEEeccChhhhhhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML---G--GIRSASPMDAG---KDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g--~~~~~~~~~~~---~~~dvii~~v~~~~~~~~v   75 (173)
                      +|||||+|.||.+||++|+++|++|++|||++++.+.+.+.   |  +....++++++   +.+|+|++++|++..++++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            58999999999999999999999999999999999988765   2  45667777766   4689999999988889999


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g  143 (173)
                      +   +++.+++++|++|||.+++.+.++.+..+.+.++|++|++.+            ++++||++++++.++|+|+.++
T Consensus        81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia  157 (467)
T TIGR00873        81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIA  157 (467)
T ss_pred             H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence            8   578889999999999999999998888899999999999864            7789999999999999999998


Q ss_pred             Cc-------eeecCCCchHhHhHHhHhhhHhhhhc
Q 044797          144 ID-------KKVNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       144 ~~-------~~~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      ..       .|+|+.|+| +|++++.|.+.-++++
T Consensus       158 ~~~~~~~~~~~~G~~GsG-~~vKmvhN~i~~~~m~  191 (467)
T TIGR00873       158 AKVDGEPCCTWIGPDGAG-HYVKMVHNGIEYGDMQ  191 (467)
T ss_pred             hhcCCCCceEEECCcCHH-HHHHHHHHHHHHHHHH
Confidence            53       699999999 6688999887766654

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.95  E-value=5.9e-27  Score=183.21  Aligned_cols=163  Identities=14%  Similarity=0.137  Sum_probs=142.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh---cCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG---KDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |+|+|||+|.||.+|+++|.++|++|.+|||++++.+.+.+.+.....++.++.   +.+|+|++|+|++ .+++++   
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~---   76 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL---   76 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence            489999999999999999999999999999999999999888776666766654   4689999999976 888998   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI---  144 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~---  144 (173)
                      +++.+.+++|++++|+++..|.++.++.+.+.++|++|++.+            .++++|+++.++.++|+|+.++.   
T Consensus        77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~~~  156 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQ  156 (298)
T ss_pred             HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCcCC
Confidence            578888999999999999999999999999999999998864            66889999999999999999985   


Q ss_pred             -ceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          145 -DKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       145 -~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                       ..|+|+.|+| ++.+++.|.+.-++.
T Consensus       157 ~~~~~G~~G~~-~~~K~~~n~l~~~~~  182 (298)
T TIGR00872       157 GYLYCGPCGSG-HFVKMVHNGIEYGMM  182 (298)
T ss_pred             CEEEECCccHh-HHHHHHHHHHHHHHH
Confidence             5799999999 556788887765543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.95  E-value=2e-26  Score=179.76  Aligned_cols=164  Identities=16%  Similarity=0.328  Sum_probs=144.5

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVL   83 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~   83 (173)
                      ||+|||+|.||.+|+++|++.|++|++|||++++.+.+.+.|....++..++++++|+||+|+|++.+++.+++.++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            69999999999999999999999999999999999999888887788888999999999999998888888876544577


Q ss_pred             hcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceeec
Q 044797           84 KGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKVN  149 (173)
Q Consensus        84 ~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~g  149 (173)
                      +.++++++++|+|+..|.+.+++.+.+++.|++|++.+             .++++|+++.++.++++++.+|. +.++|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g  160 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG  160 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence            78899999999999999999999999998999998753             56788999999999999999995 67899


Q ss_pred             CCCchHhHhHHhHhhhHhh
Q 044797          150 ISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       150 ~~Gsg~a~~~~~~~~~~~~  168 (173)
                      ..|+|.. .++++|.+.-.
T Consensus       161 ~~g~a~~-~Kl~~n~~~~~  178 (291)
T TIGR01505       161 GNGDGQT-CKVANQIIVAL  178 (291)
T ss_pred             CCCHHHH-HHHHHHHHHHH
Confidence            8888855 56777777654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.95  E-value=2e-26  Score=207.80  Aligned_cols=168  Identities=23%  Similarity=0.370  Sum_probs=150.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |+++|||||+|+||.+||++|+++|++|++|||++++.+.+.+.|.....++.++++++|+|++|+|++++++++++++.
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            35789999999999999999999999999999999999999888888888999999999999999999999999997766


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCc
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~  145 (173)
                      ++.+.+++|++++++||++|.+.+++.+.+.+  +|++|++++             +++++|+++.++.++|+|+.+|..
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~  482 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK  482 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence            78888999999999999999999999999988  899999864             778999999999999999999965


Q ss_pred             e-e-ecCCCchHhHhHHhHhhhHhhh
Q 044797          146 K-K-VNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       146 ~-~-~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      . + .|..|+|.+ .++++|++..+.
T Consensus       483 i~~~~g~~G~a~~-~KL~nN~l~~~~  507 (1378)
T PLN02858        483 LYVIKGGCGAGSG-VKMVNQLLAGVH  507 (1378)
T ss_pred             EEEeCCCCCHHHH-HHHHHHHHHHHH
Confidence            4 4 367999977 468888876543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.2e-26  Score=168.18  Aligned_cols=160  Identities=14%  Similarity=0.165  Sum_probs=144.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc---CCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK---DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |+||.||+|+||..+.++|.+.||+|++||+|++..+.+...|++..+++++.++   ....|++++|..+.+..++   
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi---   77 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI---   77 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence            5899999999999999999999999999999999999999999888888887754   5789999999877888898   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI---  144 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~---  144 (173)
                      +++.+.|.+|++|||-.+....+..+..+.+.++|++|++.+            ++|++|++++++.++|+|+.+..   
T Consensus        78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~ge~  157 (300)
T COG1023          78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGED  157 (300)
T ss_pred             HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcCcC
Confidence            679999999999999999999999999999999999999864            89999999999999999999875   


Q ss_pred             -ceeecCCCchHhHhHHhHhhhH
Q 044797          145 -DKKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       145 -~~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                       ..|+|++||| +|++++=|-+-
T Consensus       158 Gyl~~Gp~GsG-HfvKMVHNGIE  179 (300)
T COG1023         158 GYLYCGPSGSG-HFVKMVHNGIE  179 (300)
T ss_pred             ccccccCCCcc-hhHHHHhccHH
Confidence             3589999999 88888766543

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.94  E-value=3.1e-25  Score=181.41  Aligned_cols=155  Identities=13%  Similarity=0.146  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCceecChhhhhcC---CCEEEEeccChhhhhhhhcCccchhh
Q 044797           13 YSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIRSASPMDAGKD---VSALVVVISHVDQIDDIFFGHEGVLK   84 (173)
Q Consensus        13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~~~~~~i~~   84 (173)
                      ||.+||++|+++|++|.+|||++++.+.+.+.     ++..+.+++++++.   +|+|++++|++.++++++   +++.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~   77 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP   77 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence            89999999999999999999999999999874     47888999998874   899999999999999999   57889


Q ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC-c------
Q 044797           85 GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI-D------  145 (173)
Q Consensus        85 ~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~-~------  145 (173)
                      .+.+|+++||++|..|.+++++.+.++++|++|++.+            ++|+||++++++.++|+|+.++. +      
T Consensus        78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c  157 (459)
T PRK09287         78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC  157 (459)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence            9999999999999999999999999999999999864            78999999999999999999985 3      


Q ss_pred             -eeecCCCchHhHhHHhHhhhHhhhhc
Q 044797          146 -KKVNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       146 -~~~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                       .|+|+.|+| +|++++.|.+.-++++
T Consensus       158 ~~~vG~~GaG-h~vKmvhN~ie~~~mq  183 (459)
T PRK09287        158 VTYIGPDGAG-HYVKMVHNGIEYGDMQ  183 (459)
T ss_pred             eeeeCCCCHH-HHHHHHHHHHHHHHHH
Confidence             799999999 6688999988766654

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.93  E-value=5.1e-25  Score=170.02  Aligned_cols=162  Identities=15%  Similarity=0.243  Sum_probs=127.8

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |.+||+|||+|+||.+|+++|.++|+    +|++|||++++.+.+.+ .|+..+++..++++++|+||+|+| |+++.++
T Consensus         1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~v   79 (272)
T PRK12491          1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSV   79 (272)
T ss_pred             CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHH
Confidence            78899999999999999999999885    69999999999988775 687777788888999999999999 6889998


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-Cc-eee-------eceeeeeecC----HhhHHHHHHHHHhh
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-LT-FYI-------LERMFLISSS----IDCFTYLFLVKNEF  142 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g~-~~v-------~~~~~~~~g~----~~~~~~~~~~~~~~  142 (173)
                      +   +++.+.++++++++|...+-  +..++.+.+... .+ +.+       ..+++.+..+    ++..+.++.+|+.+
T Consensus        80 l---~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~  154 (272)
T PRK12491         80 I---NQIKDQIKNDVIVVTIAAGK--SIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIF  154 (272)
T ss_pred             H---HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcC
Confidence            8   56777788889999998764  446777777431 22 221       1224444443    34567899999999


Q ss_pred             CCcee---------ecCCCchHhHhHHhHhhhHhhhhcC
Q 044797          143 FIDKK---------VNISGQEIHWGYLKINYFIRVMTDG  172 (173)
Q Consensus       143 g~~~~---------~g~~Gsg~a~~~~~~~~~~~~~~~~  172 (173)
                      |...+         ++.+||||||+|+    |+|+|.|+
T Consensus       155 G~~~~~~E~~~d~~talsgsgPAf~~~----~~eal~~a  189 (272)
T PRK12491        155 GQTEVVNEKLMDVVTSISGSSPAYVYM----FIEAMADA  189 (272)
T ss_pred             CCEEEEcHHHhhhHHHhccCcHHHHHH----HHHHHHHH
Confidence            98655         3789999999998    77777654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.93  E-value=1.1e-24  Score=166.01  Aligned_cols=160  Identities=16%  Similarity=0.262  Sum_probs=126.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHH-HcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISDPLVDKFF-MLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      ++||+|||+|+||.+|+.+|.++|    .+|++.||++++.+.+. +.|+..+++..++++++|+||+|++ |+++++++
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl   79 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVL   79 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHH
Confidence            478999999999999999999999    58999999999987444 4576667777899999999999999 78899998


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc-eee-------eceeeeeec----CHhhHHHHHHHHHhhCC
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT-FYI-------LERMFLISS----SIDCFTYLFLVKNEFFI  144 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~-~~v-------~~~~~~~~g----~~~~~~~~~~~~~~~g~  144 (173)
                         .++.+ ..+++++|++..+.  ....+.+.+....+ +.+       ..+++.++.    +++..+.++.+|+.+|.
T Consensus        80 ---~~l~~-~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~  153 (266)
T COG0345          80 ---SKLKP-LTKDKLVISIAAGV--SIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK  153 (266)
T ss_pred             ---HHhhc-ccCCCEEEEEeCCC--CHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC
Confidence               45655 77899999998764  44677777752222 211       223555555    34667799999999998


Q ss_pred             ceee---------cCCCchHhHhHHhHhhhHhhhhcC
Q 044797          145 DKKV---------NISGQEIHWGYLKINYFIRVMTDG  172 (173)
Q Consensus       145 ~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~~  172 (173)
                      +.++         +.+||||||+|+    |+|+|+|+
T Consensus       154 v~~v~E~~~da~TaisGSgPAyv~~----~iEal~~a  186 (266)
T COG0345         154 VVEVEESLMDAVTALSGSGPAYVFL----FIEALADA  186 (266)
T ss_pred             eEEechHHhhHHHHHhcCCHHHHHH----HHHHHHHH
Confidence            7765         789999999998    88888774

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.92  E-value=1.3e-23  Score=161.94  Aligned_cols=157  Identities=17%  Similarity=0.221  Sum_probs=122.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC----eEEEE-cCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY----KVQAF-EISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      |||+|||+|+||.+|+++|+++|+    +|++| ||++++.+.+.+.|+...+++.++++++|+||+|+| ++++++++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            589999999999999999999998    89999 999999988888898888888999999999999998 67889998 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-c---------e-eeeee---cCHhhHHHHHHHHHhhC
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-E---------R-MFLIS---SSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-~---------~-~~~~~---g~~~~~~~~~~~~~~~g  143 (173)
                        .++.+.+++++++++..++.  ....+.+.+...  +++. .         . ..++.   ++++.++.++++|+.+|
T Consensus        79 --~~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G  152 (266)
T PLN02688         79 --TELRPLLSKDKLLVSVAAGI--TLADLQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVG  152 (266)
T ss_pred             --HHHHhhcCCCCEEEEecCCC--cHHHHHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence              46777788899988774433  223444444322  3332 1         1 22332   35678899999999999


Q ss_pred             Cceee---------cCCCchHhHhHHhHhhhHhhhhc
Q 044797          144 IDKKV---------NISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       144 ~~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      .+.++         +.+||||+|+|.    ++++|++
T Consensus       153 ~~~~~~e~~~d~~~~~~g~g~a~~~~----~~~a~~e  185 (266)
T PLN02688        153 KIWVVDEKLLDAVTGLSGSGPAYIFL----AIEALAD  185 (266)
T ss_pred             CEEEeCHHHcchhHhhhcCHHHHHHH----HHHHHHH
Confidence            96564         789999999988    6666654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.91  E-value=4.9e-23  Score=159.80  Aligned_cols=157  Identities=10%  Similarity=0.135  Sum_probs=121.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCCh-HHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISD-PLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~-~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |||+|||+|+||.+|+++|.++|    ++|++|||++ ++.+.+... |+....++.++++++|+||+|+| |+++.+++
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~vl   82 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEAL   82 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHHH
Confidence            69999999999999999999998    7899999976 466776554 77778888888999999999999 66777877


Q ss_pred             cCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCceeee----------ce-eeeeecC---HhhHHHHHHHHHh
Q 044797           77 FGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTFYIL----------ER-MFLISSS---IDCFTYLFLVKNE  141 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~~v~----------~~-~~~~~g~---~~~~~~~~~~~~~  141 (173)
                         +++.+.++++++|+++ ++.++++.++   .+. .+..++.          .. +.+++++   ++.++.++++|+.
T Consensus        83 ---~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~-~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~  155 (279)
T PRK07679         83 ---IPFKEYIHNNQLIISLLAGVSTHSIRN---LLQ-KDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFET  155 (279)
T ss_pred             ---HHHHhhcCCCCEEEEECCCCCHHHHHH---HcC-CCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHh
Confidence               4677778889999997 6676665544   332 2222221          11 4444554   4577899999999


Q ss_pred             hCCcee---------ecCCCchHhHhHHhHhhhHhhhhc
Q 044797          142 FFIDKK---------VNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       142 ~g~~~~---------~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      +|...+         ++.+||||+|++.    ++++|.+
T Consensus       156 ~G~~~~v~e~~~~~~~a~~Gsgpa~~~~----~~eal~e  190 (279)
T PRK07679        156 IGLVSVVEEEDMHAVTALSGSGPAYIYY----VVEAMEK  190 (279)
T ss_pred             CCcEEEeCHHHhhhHHHhhcCHHHHHHH----HHHHHHH
Confidence            998655         7999999999998    6666654

>PRK07680 late competence protein ComER; Validated

Probab=99.89  E-value=8.9e-22  Score=152.31  Aligned_cols=159  Identities=10%  Similarity=0.085  Sum_probs=122.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |+|+|||+|+||.+++++|.+.|+    +|.+|+|++++.+.+.+.  ++....+..++++++|+||+|+| +.++.+++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            489999999999999999999983    799999999988877663  67777788888899999999999 67788888


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-------e-eeeeec---CHhhHHHHHHHHHhhCCc
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-------R-MFLISS---SIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-------~-~~~~~g---~~~~~~~~~~~~~~~g~~  145 (173)
                         +++.+++.++++|++++++.  ..+.+.+.+..+.++++..       + +.+..+   +++..+.++++|+.+|..
T Consensus        80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~  154 (273)
T PRK07680         80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTP  154 (273)
T ss_pred             ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCE
Confidence               46777888899999998743  4567777765544555431       2 222233   345678899999999976


Q ss_pred             eee---------cCCCchHhHhHHhHhhhHh
Q 044797          146 KKV---------NISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       146 ~~~---------g~~Gsg~a~~~~~~~~~~~  167 (173)
                      .++         ..+||||+|+|..++.|++
T Consensus       155 ~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~  185 (273)
T PRK07680        155 LVIEEDITRVSSDIVSCGPAFFSYLLQRFID  185 (273)
T ss_pred             EEEChHhcchhhhhccchHHHHHHHHHHHHH
Confidence            554         5689999999984444443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.88  E-value=1.9e-21  Score=150.71  Aligned_cols=160  Identities=9%  Similarity=0.069  Sum_probs=119.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCCh-HHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISD-PLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~-~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      |++|+|||+|+||.+++++|.+.|    ++|.+|+|++ ++.+.+...  +.....+..++++++|+||+|+| ++++.+
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~   79 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLP   79 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHH
Confidence            468999999999999999999988    7899999864 445554443  34455677888899999999999 677888


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc-eeee-------ceeeeeecC----HhhHHHHHHHHHhh
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT-FYIL-------ERMFLISSS----IDCFTYLFLVKNEF  142 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~-~~v~-------~~~~~~~g~----~~~~~~~~~~~~~~  142 (173)
                      ++   +++.+++++++++++...+-  +..++.+.+....+ +.+.       .+++.+..+    ++..+.++.+|+.+
T Consensus        80 vl---~~l~~~l~~~~~ivS~~aGi--~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~  154 (277)
T PRK06928         80 LL---KDCAPVLTPDRHVVSIAAGV--SLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHF  154 (277)
T ss_pred             HH---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhC
Confidence            88   46777788888999887754  33467776643222 2221       224455443    34567899999999


Q ss_pred             CCcee---------ecCCCchHhHhHHhHhhhHhhhhc
Q 044797          143 FIDKK---------VNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       143 g~~~~---------~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      |...+         ++.+||||||+|+    |+++|+|
T Consensus       155 G~~~~v~E~~~d~~tal~gsgPA~~~~----~~~al~~  188 (277)
T PRK06928        155 SHVMTIREENMDIASNLTSSSPGFIAA----IFEEFAE  188 (277)
T ss_pred             CCEEEEchhhCceeeeeecCHHHHHHH----HHHHHHH
Confidence            98654         4889999999998    7777776

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.86  E-value=1.8e-20  Score=144.53  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=118.8

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC---CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG---YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |||+|+|||+|.||..+++.|.+.|   ++|.+|+|++++.+.+.+. |+....+..++++++|+||+|+| +.++++++
T Consensus         1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~-~~~~~~v~   79 (267)
T PRK11880          1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVK-PQVMEEVL   79 (267)
T ss_pred             CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcC-HHHHHHHH
Confidence            8899999999999999999999998   7899999999998888775 77777788888899999999999 56788887


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ceeeeee----cCHhhHHHHHHHHHhh
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ERMFLIS----SSIDCFTYLFLVKNEF  142 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~~~~~~----g~~~~~~~~~~~~~~~  142 (173)
                         +.+.+.+  +++|++.+++.+  .+.+.+.+. .+.+++.          .+...+.    .+++..+.++.+++.+
T Consensus        80 ---~~l~~~~--~~~vvs~~~gi~--~~~l~~~~~-~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~l  151 (267)
T PRK11880         80 ---SELKGQL--DKLVVSIAAGVT--LARLERLLG-ADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAF  151 (267)
T ss_pred             ---HHHHhhc--CCEEEEecCCCC--HHHHHHhcC-CCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhC
Confidence               4565555  567887776543  345555553 2333321          1122222    3567788999999999


Q ss_pred             CCceee----------cCCCchHhHhHHhHhhhHhhhhc
Q 044797          143 FIDKKV----------NISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       143 g~~~~~----------g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      |...++          ..+||+|+|.|.    ++++|.+
T Consensus       152 G~~~~~~~e~~~d~~~a~~~~~pa~~~~----~~~~~~~  186 (267)
T PRK11880        152 GKVVWVDDEKQMDAVTAVSGSGPAYVFL----FIEALAD  186 (267)
T ss_pred             CeEEEECChHhcchHHHHhcChHHHHHH----HHHHHHH
Confidence            976554          478999999988    5555543

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=6.4e-21  Score=149.57  Aligned_cols=158  Identities=14%  Similarity=0.220  Sum_probs=135.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-----CceecChhhh---hcCCCEEEEeccChhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-----GIRSASPMDA---GKDVSALVVVISHVDQID   73 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-----~~~~~~~~~~---~~~~dvii~~v~~~~~~~   73 (173)
                      ...||+||++.||+.+|.++.++|+.|.+|||++++.+.+.+..     +..+.+.+|.   ++...-|+++|+....++
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            46899999999999999999999999999999999999987752     4456677665   557889999999777778


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec------------eeeeeecCHhhHHHHHHHHHh
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE------------RMFLISSSIDCFTYLFLVKNE  141 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~------------~~~~~~g~~~~~~~~~~~~~~  141 (173)
                      .++   +++.++|.+|+++||-++....++.+..+.|.+.|++|+..            +..|.||++++++.++|+|..
T Consensus        83 ~~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~  159 (473)
T COG0362          83 AVI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTK  159 (473)
T ss_pred             HHH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHH
Confidence            888   67999999999999999888888888888899999999864            388999999999999999998


Q ss_pred             hC-------CceeecCCCchHhHhHHhHh
Q 044797          142 FF-------IDKKVNISGQEIHWGYLKIN  163 (173)
Q Consensus       142 ~g-------~~~~~g~~Gsg~a~~~~~~~  163 (173)
                      +.       +..|+|+.|+| +|++++=|
T Consensus       160 IaAk~~g~pCc~~iG~~GAG-HfVKmVHN  187 (473)
T COG0362         160 IAAKVDGEPCCTWIGPDGAG-HFVKMVHN  187 (473)
T ss_pred             HHhhcCCCCceeeECCCCCC-ceeeeeec
Confidence            85       24689999999 78887533

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.85  E-value=2.4e-20  Score=151.87  Aligned_cols=161  Identities=19%  Similarity=0.174  Sum_probs=126.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~dvi   62 (173)
                      |||+|||+|.||.++|..|+++|++|++||+++++++.+.+                   .| +..++++.++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            48999999999999999999999999999999999887653                   13 45566778888999999


Q ss_pred             EEeccChhh---------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cc----e--eeece----
Q 044797           63 VVVISHVDQ---------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LT----F--YILER----  121 (173)
Q Consensus        63 i~~v~~~~~---------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~----~--~v~~~----  121 (173)
                      |+|+|++.+         +..++   +++.+.+++++++++.||..|.+.+++.+.+.+.  |.    .  +...+    
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence            999997643         44444   4677888999999999999999998887544332  22    1  11111    


Q ss_pred             ------------eeeeecCHhhHHHHHHHHHhhC--CceeecCCCchHhHhHHhHhhhHh
Q 044797          122 ------------MFLISSSIDCFTYLFLVKNEFF--IDKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       122 ------------~~~~~g~~~~~~~~~~~~~~~g--~~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                                  .+++|+++++.+.++++++.++  ...+++..|++-. .+++.|.+..
T Consensus       158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~-~Kl~~N~~~a  216 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEM-IKLAENTFRA  216 (411)
T ss_pred             CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHH-HHHHHHHHHH
Confidence                        4677888899999999999996  5678898888855 5677888743

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.84  E-value=3.7e-20  Score=142.30  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=110.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      |||+|||+|+||+++++.|.+++    .++++++|++++.      +.....++.++++++|+||+|+| |+++++++  
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl--   74 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL--   74 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH--
Confidence            79999999999999999999887    2499999987652      33456677788889999999999 78899998  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeee-------ceeeeeec----CHhhHHHHHHHHHhhCCc
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYIL-------ERMFLISS----SIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~-------~~~~~~~g----~~~~~~~~~~~~~~~g~~  145 (173)
                       .++.+++.++.+|.+.+.++.+.   +.+.+..  ..++++.       .+.+.+..    +++..+.++.+|+.+|.+
T Consensus        75 -~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~  150 (260)
T PTZ00431         75 -LEIKPYLGSKLLISICGGLNLKT---LEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGII  150 (260)
T ss_pred             -HHHHhhccCCEEEEEeCCccHHH---HHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcE
Confidence             46777776544444555555443   4444432  1233322       23444443    234678899999999986


Q ss_pred             ee---------ecCCCchHhHhHHhHhhhHhhhhcC
Q 044797          146 KK---------VNISGQEIHWGYLKINYFIRVMTDG  172 (173)
Q Consensus       146 ~~---------~g~~Gsg~a~~~~~~~~~~~~~~~~  172 (173)
                      .+         ++.+||||||+|+    |+++|+|+
T Consensus       151 ~~v~E~~~d~~ta~~gsgPA~~~~----~~~al~~~  182 (260)
T PTZ00431        151 QEIKEKDMDIATAISGCGPAYVFL----FIESLIDA  182 (260)
T ss_pred             EEEChHHcchhhhhcCCHHHHHHH----HHHHHHHH
Confidence            55         4889999999998    77777764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.83  E-value=1.3e-19  Score=147.70  Aligned_cols=163  Identities=13%  Similarity=0.141  Sum_probs=123.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc----------------eecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI----------------RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----------------~~~~~~~~~~~~dvii~~v   66 (173)
                      |||+|||+|+||.++|.+|.+ |++|++||+++++++.+. .|..                ..++..+.+++||++|+|+
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            799999999999999999877 699999999999999987 3322                3344456789999999999


Q ss_pred             cCh------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHH-Hhc-CCceeee--------ce---------
Q 044797           67 SHV------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKT-FTG-NLTFYIL--------ER---------  121 (173)
Q Consensus        67 ~~~------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~-l~~-~g~~~v~--------~~---------  121 (173)
                      |+|      .+++.++...+++.+++++|+++|+.||+.|.+++++.+. +.+ .|..+.+        ++         
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~  164 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR  164 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence            987      3446666544678889999999999999999999875443 332 3544322        11         


Q ss_pred             -----eeeeecCHhhHHHHHHHHHhhC--CceeecCCCchHhHhHHhHhhhHhh
Q 044797          122 -----MFLISSSIDCFTYLFLVKNEFF--IDKKVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       122 -----~~~~~g~~~~~~~~~~~~~~~g--~~~~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                           .+..|.++++.+.++++++.+.  ...+++..|+|-. .+++.|.|...
T Consensus       165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~-~Kl~~N~~~av  217 (425)
T PRK15182        165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEA-AKVIENTQRDL  217 (425)
T ss_pred             ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHH-HHHHHHHHHHH
Confidence                 3455666777888999998875  3567888888855 66778877643

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.83  E-value=3.9e-19  Score=135.38  Aligned_cols=157  Identities=10%  Similarity=0.113  Sum_probs=113.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---e-EEEEcC-ChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---K-VQAFEI-SDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~-V~~~d~-~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      +||+|||+|+||.++++.|.++|.   + +++++| ++++.+.+.+ .++..+.+.+++++++|+|++++| ++..++++
T Consensus         5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp-~~~~~~v~   83 (245)
T PRK07634          5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP-PSAHEELL   83 (245)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC-HHHHHHHH
Confidence            689999999999999999998873   3 778887 4777777765 377777788888999999999999 56678887


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ce----eeeeecCHhhHHHHHHHHHhh
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ER----MFLISSSIDCFTYLFLVKNEF  142 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~----~~~~~g~~~~~~~~~~~~~~~  142 (173)
                         +++.+.++ +++|++++.+.  +...+.+.+.. +..++.          .+    .+....+++..+.++.+|+.+
T Consensus        84 ---~~l~~~~~-~~~vis~~~gi--~~~~l~~~~~~-~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~  156 (245)
T PRK07634         84 ---AELSPLLS-NQLVVTVAAGI--GPSYLEERLPK-GTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGI  156 (245)
T ss_pred             ---HHHHhhcc-CCEEEEECCCC--CHHHHHHHcCC-CCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhC
Confidence               45655554 67888887654  23356666532 222211          11    122234567788999999999


Q ss_pred             CCceee---------cCCCchHhHhHHhHhhhHhhhhc
Q 044797          143 FIDKKV---------NISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       143 g~~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      |...++         +.+||||+|+|.    |+++|.|
T Consensus       157 G~~~~~~e~~~~~~~a~~gs~pa~~~~----~~~a~~~  190 (245)
T PRK07634        157 GTSQLCTEEEVHQLTAVTGSAPAFLYY----FAESLIE  190 (245)
T ss_pred             CCEEEECHHHcchHHhhhcchHHHHHH----HHHHHHH
Confidence            976543         789999999998    6666655

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.83  E-value=2.3e-19  Score=146.10  Aligned_cols=159  Identities=17%  Similarity=0.171  Sum_probs=122.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------CCceecChhhhhcCCCEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------GGIRSASPMDAGKDVSALV   63 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~dvii   63 (173)
                      +||+|||+|.||.++|.+|+++|++|++||+++++++.+...                   |.....+   ..+++|+||
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~~~~aDvvi   80 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---TPEPADAFL   80 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---ccccCCEEE
Confidence            799999999999999999999999999999999999875422                   1111111   134799999


Q ss_pred             EeccCh---------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce--------------eee-
Q 044797           64 VVISHV---------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF--------------YIL-  119 (173)
Q Consensus        64 ~~v~~~---------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~--------------~v~-  119 (173)
                      +|+|+|         ..+..++   +++.+++++|+++|+.||..|.+++++...+.+.+..              ++. 
T Consensus        81 i~vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~  157 (415)
T PRK11064         81 IAVPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYC  157 (415)
T ss_pred             EEcCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEEC
Confidence            999976         3555555   5688899999999999999999999998877654321              111 


Q ss_pred             -----ce---------eeeeec-CHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhhhHhh
Q 044797          120 -----ER---------MFLISS-SIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       120 -----~~---------~~~~~g-~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                           .+         ..+++| ++++.+.++++++.++. +.+++..+++-. .+++.|.|...
T Consensus       158 PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~-~Kl~~N~~~a~  221 (415)
T PRK11064        158 PERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEM-CKLTENSFRDV  221 (415)
T ss_pred             CCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHH-HHHHHHHHHHH
Confidence                 11         356688 88899999999999985 457888888866 56777777643

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.82  E-value=6.1e-19  Score=142.27  Aligned_cols=160  Identities=13%  Similarity=0.102  Sum_probs=122.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----------------cCCce--ecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----------------LGGIR--SASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~~dvii~   64 (173)
                      |||+|||+|.||.++|..++ .||+|++||+++++++.+.+                .+.+.  +.+..++++++|+||+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            48999999999999997776 59999999999999988765                22233  3336677899999999


Q ss_pred             eccCh----------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------
Q 044797           65 VISHV----------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------  121 (173)
Q Consensus        65 ~v~~~----------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------  121 (173)
                      |+|++          ..++.++   +++.+ +++|++++..||..|.+++++.+.+.+.++.|-.++             
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a~~d~~~p  155 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHP  155 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCcccccccCC
Confidence            99976          3555565   45665 689999999999999999999998877777653221             


Q ss_pred             -eeeeecCHhhHHHHHHHHHh--hCCce--eecCCCchHhHhHHhHhhhHhh
Q 044797          122 -MFLISSSIDCFTYLFLVKNE--FFIDK--KVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       122 -~~~~~g~~~~~~~~~~~~~~--~g~~~--~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                       .+++|++++..+.+.+++..  ++...  +++..+++-. .+++.|.|...
T Consensus       156 ~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-~Kl~~N~~~a~  206 (388)
T PRK15057        156 SRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEA-IKLFANTYLAM  206 (388)
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-HHHHHHHHHHH
Confidence             56778788878888888754  44322  5788888844 66778877653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.81  E-value=1.3e-18  Score=135.64  Aligned_cols=146  Identities=16%  Similarity=0.083  Sum_probs=112.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------c-----------------CCceecChhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------L-----------------GGIRSASPMDAGK   57 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~~~~~~~   57 (173)
                      ++||+|||+|.||..+|..|+++|++|++||+++++++++.+       .                 .++.+++..++++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            368999999999999999999999999999999998876542       1                 1335667788899


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHh-cCCceeeece-----eeeeec---
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFT-GNLTFYILER-----MFLISS---  127 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~-~~g~~~v~~~-----~~~~~g---  127 (173)
                      +||+||+|+|++.+++..++  .++.+.+++++++ +++||..+....+..+... ..|.||+...     +.++++   
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t  158 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLET  158 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCC
Confidence            99999999998877776665  3577788889877 6888888876544333221 1477887432     556666   


Q ss_pred             CHhhHHHHHHHHHhhCC-ceeec
Q 044797          128 SIDCFTYLFLVKNEFFI-DKKVN  149 (173)
Q Consensus       128 ~~~~~~~~~~~~~~~g~-~~~~g  149 (173)
                      ++++++.++++++.+|+ +.+++
T Consensus       159 ~~~~~~~~~~~l~~lg~~~v~v~  181 (288)
T PRK09260        159 SDETVQVAKEVAEQMGKETVVVN  181 (288)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEec
Confidence            78899999999999996 45665

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.79  E-value=8e-18  Score=133.54  Aligned_cols=160  Identities=15%  Similarity=0.044  Sum_probs=123.1

Q ss_pred             CeEEEEeCChh--------------------hHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceecChhhhhc
Q 044797            3 SKVGFVGLDEY--------------------SVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~m--------------------G~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~~   57 (173)
                      |||.|.|.|+-                    |.+||.+|.++|++|++|||+++     +.+.+.+.|+..+.+..++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~   80 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK   80 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence            58999999874                    88999999999999999999987     445566778888888889999


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHH-HHHHHHHh----cCCceeeece----------e
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHM-QKLEKTFT----GNLTFYILER----------M  122 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~-~~l~~~l~----~~g~~~v~~~----------~  122 (173)
                      ++|+||+|+|++.++++++   .++.++++++++|+|+|++++... +.+.+.+.    ..|+.+....          .
T Consensus        81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~  157 (342)
T PRK12557         81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHY  157 (342)
T ss_pred             CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchhe
Confidence            9999999999766588888   478889999999999999999887 67777764    2345443211          2


Q ss_pred             eeeec--------CHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhH
Q 044797          123 FLISS--------SIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       123 ~~~~g--------~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                      ++.++        +++.+++++++++.+|...++...|.+.+ +++.+|++.
T Consensus       158 Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~-vk~~~n~l~  208 (342)
T PRK12557        158 VIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSA-VADMGSLVT  208 (342)
T ss_pred             EEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHH-HHHHHHHHH
Confidence            33333        67889999999999998556554566544 455555544

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.79  E-value=1.3e-17  Score=131.18  Aligned_cols=150  Identities=10%  Similarity=0.033  Sum_probs=109.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcCC-------------ceecChhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLGG-------------IRSASPMDAGK   57 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~   57 (173)
                      +++|+|||+|.||.++|..|+++|++|++||+++++.+..           .+.|.             ..+.++.++++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            4689999999999999999999999999999999877653           23342             46678888889


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece---------eeeee--
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER---------MFLIS--  126 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~---------~~~~~--  126 (173)
                      ++|+|+.|+|++.+++..++  .++.+..+++ .++.+++. +....++.+.+...+..+.+.+         +-+++  
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~--~~l~~~~~~~-~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~  157 (308)
T PRK06129         82 DADYVQESAPENLELKRALF--AELDALAPPH-AILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAP  157 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHH--HHHHHhCCCc-ceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCC
Confidence            99999999998766666654  2354445444 44444443 3456677787755444443332         22454  


Q ss_pred             -cCHhhHHHHHHHHHhhCC-ceeecCCCchH
Q 044797          127 -SSIDCFTYLFLVKNEFFI-DKKVNISGQEI  155 (173)
Q Consensus       127 -g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~  155 (173)
                       ++++.++.++++++.+|. +.+++..|.|.
T Consensus       158 ~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~  188 (308)
T PRK06129        158 WTAPATLARAEALYRAAGQSPVRLRREIDGF  188 (308)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCccH
Confidence             778899999999999996 57888777773

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.78  E-value=6.1e-18  Score=133.61  Aligned_cols=140  Identities=12%  Similarity=0.143  Sum_probs=106.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------CCceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ||||+|||+|.||+.++..|.+.|++|++|+|++++.+.+.+.              +....++++++++++|+||+|+|
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP   80 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence            3689999999999999999999999999999999998887765              24456677778889999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhcC-----Cceeeece-------------eeeeecC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTGN-----LTFYILER-------------MFLISSS  128 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~~-----g~~~v~~~-------------~~~~~g~  128 (173)
                      + .++++++   +++.+.+.+++++++++ +..+.+.+++.+.+.+.     ...++..+             ..+.+++
T Consensus        81 ~-~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~  156 (325)
T PRK00094         81 S-QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD  156 (325)
T ss_pred             H-HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence            5 6788887   46777888899999887 66665555555555432     22233221             2334556


Q ss_pred             HhhHHHHHHHHHhhCCc
Q 044797          129 IDCFTYLFLVKNEFFID  145 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~~  145 (173)
                      .+..+.+.++|+..|..
T Consensus       157 ~~~~~~~~~~l~~~~~~  173 (325)
T PRK00094        157 EELAERVQELFHSPYFR  173 (325)
T ss_pred             HHHHHHHHHHhCCCCEE
Confidence            78889999999888753

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.78  E-value=8e-18  Score=133.39  Aligned_cols=138  Identities=12%  Similarity=0.092  Sum_probs=107.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------C------CceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------G------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +|||+|||+|.||++++.+|.++|++|++|+|++++.+.+.+.        |      +..++++.++++++|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            3699999999999999999999999999999999988877653        2      3356678888899999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCC-CHHH--HHHHHHHHhc---CCceeeece-------------eeeeecC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSH--MQKLEKTFTG---NLTFYILER-------------MFLISSS  128 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~--~~~l~~~l~~---~g~~~v~~~-------------~~~~~g~  128 (173)
                      +. ++++++       +.++++.++++++++ .+..  .+.+.+.+.+   .++.++..+             +.+.+++
T Consensus        84 ~~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~  155 (328)
T PRK14618         84 SK-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE  155 (328)
T ss_pred             hH-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence            54 566665       446678899999884 5554  5677777655   555554432             4566778


Q ss_pred             HhhHHHHHHHHHhhCCcee
Q 044797          129 IDCFTYLFLVKNEFFIDKK  147 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~~~~  147 (173)
                      ++..+.++++|+..+...+
T Consensus       156 ~~~~~~v~~ll~~~~~~v~  174 (328)
T PRK14618        156 PGLARRVQAAFSGPSFRVY  174 (328)
T ss_pred             HHHHHHHHHHhCCCcEEEE
Confidence            8889999999999886554

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.78  E-value=4.9e-18  Score=141.25  Aligned_cols=142  Identities=10%  Similarity=0.087  Sum_probs=112.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~   58 (173)
                      .+|+|||+|.||..||+.++.+|++|++||++++++++.           .+.|             +..+.++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            579999999999999999999999999999999988763           3344             456677765 569


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHhc----CCceeeece-----eeeee--
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLIS--  126 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~--  126 (173)
                      ||+||.|+|++.++++.+++  ++...+++++++. |+||.++.   ++++.+..    .|.||++..     +-+++  
T Consensus        87 aDlViEav~E~~~vK~~vf~--~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~  161 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFA--QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMKLVEVVSGL  161 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCeeEEEeCCC
Confidence            99999999999999988873  4666778888884 78888876   34554432    488998842     44455  


Q ss_pred             -cCHhhHHHHHHHHHhhCC-ceeecC
Q 044797          127 -SSIDCFTYLFLVKNEFFI-DKKVNI  150 (173)
Q Consensus       127 -g~~~~~~~~~~~~~~~g~-~~~~g~  150 (173)
                       +++++++.+.++++.+|+ .++++.
T Consensus       162 ~Ts~~~~~~~~~l~~~lgk~pv~v~d  187 (507)
T PRK08268        162 ATDPAVADALYALARAWGKTPVRAKD  187 (507)
T ss_pred             CCCHHHHHHHHHHHHHcCCceEEecC
Confidence             478899999999999996 456764

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.78  E-value=1.4e-17  Score=138.46  Aligned_cols=145  Identities=14%  Similarity=0.052  Sum_probs=108.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVS   60 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~d   60 (173)
                      |.+||+|||+|.||.+||.+|+++|++|++||+++++.+.+.+                   .+ +..++++.+++++||
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD   82 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD   82 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence            4579999999999999999999999999999999998765422                   12 567778889999999


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece---------eeeeecC---
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER---------MFLISSS---  128 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~---------~~~~~g~---  128 (173)
                      +|+.|+|++.++++.++  .++.+.++++. ++++||.++.. .++.+.+...+..++..+         +.+++|+   
T Consensus        83 ~Vieavpe~~~vk~~l~--~~l~~~~~~~~-iI~SsTsgi~~-s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         83 WIQESVPERLDLKRRVL--AEIDAAARPDA-LIGSSTSGFLP-SDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             EEEEcCcCCHHHHHHHH--HHHHhhCCCCc-EEEEcCCCCCH-HHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999998877787665  34666677665 45555555443 366676655555444432         4455555   


Q ss_pred             HhhHHHHHHHHHhhCC-ceeec
Q 044797          129 IDCFTYLFLVKNEFFI-DKKVN  149 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~-~~~~g  149 (173)
                      ++.++.++++++.+|. .++++
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~  180 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIA  180 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeec
Confidence            6889999999999996 44555

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.77  E-value=2.3e-17  Score=126.70  Aligned_cols=152  Identities=8%  Similarity=0.085  Sum_probs=110.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe---EEEEcCChHHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK---VQAFEISDPLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      |||+|||+|+||.+++++|.+.|++   +.+|||++++.+.+.+.  ++..+.++.++++++|+||+|+| |+++.+++ 
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   78 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL-   78 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            4899999999999999999998854   57999999998887764  46677888888899999999999 67788887 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee---------ceeeeeecCHhhHHHHHHHHHhhCCceee
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL---------ERMFLISSSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~---------~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                        +++  .+.+++++++++..  ...+.+.+.+......+..         .....+.++   .+.++++++.+|...++
T Consensus        79 --~~l--~~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~---~~~~~~l~~~lG~~~~~  149 (258)
T PRK06476         79 --RAL--RFRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP---DPFVAALFDALGTAVEC  149 (258)
T ss_pred             --HHh--ccCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---HHHHHHHHHhcCCcEEE
Confidence              233  25688999987653  3556777776532222211         113333333   25889999999975543


Q ss_pred             ----------cCCCchHhHhHHhHhhhHhhhh
Q 044797          149 ----------NISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       149 ----------g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                                +. .++|+|+|.    +++++.
T Consensus       150 ~~e~~~d~~~a~-~s~~a~~~~----~~~~~~  176 (258)
T PRK06476        150 DSEEEYDLLAAA-SALMATYFG----ILETAT  176 (258)
T ss_pred             CChHhccceeeh-hccHHHHHH----HHHHHH
Confidence                      33 468999987    555544

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.77  E-value=9.9e-18  Score=130.89  Aligned_cols=142  Identities=13%  Similarity=0.096  Sum_probs=105.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   58 (173)
                      +||+|||+|.||.+||..|+.+|++|++||+++++++++.+           .|             +..+++.+ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            68999999999999999999999999999999988766432           12             23455554 5789


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI  125 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~  125 (173)
                      +|+||+|+|++.++++.++  .++.+.++++++++ ++|+..+.   ++.+.+..    .|+||++..        +...
T Consensus        84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~  158 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVELIRGI  158 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEEEeCCC
Confidence            9999999998766666554  46778889999887 45555443   45665532    267777632        2223


Q ss_pred             ecCHhhHHHHHHHHHhhCCc-eeecC
Q 044797          126 SSSIDCFTYLFLVKNEFFID-KKVNI  150 (173)
Q Consensus       126 ~g~~~~~~~~~~~~~~~g~~-~~~g~  150 (173)
                      ++++++++.+.++++.+|+. .+++.
T Consensus       159 ~t~~~~~~~~~~~~~~~gk~~v~~~d  184 (292)
T PRK07530        159 ATDEATFEAAKEFVTKLGKTITVAED  184 (292)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            57789999999999999974 44443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.76  E-value=2.9e-17  Score=127.88  Aligned_cols=143  Identities=14%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcCC-------------ceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLGG-------------IRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g~-------------~~~~~~~~~~~~   58 (173)
                      .||+|||+|.||..||..++.+|++|++||++++.+++           +.+.|.             +.++++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            58999999999999999999999999999999998766           333332             256666 55799


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcC-CCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeece--------eeeeec
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGL-QKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILER--------MFLISS  127 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l-~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~~--------~~~~~g  127 (173)
                      ||+||.|+|++.++++.+++  .+.+.+ ++++++.+.|+..|.+.........++  |.||+..+        +....+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T  162 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT  162 (286)
T ss_pred             CCEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence            99999999999999888873  466666 889999988877665543332222334  77887743        445577


Q ss_pred             CHhhHHHHHHHHH-hhCCc-eee
Q 044797          128 SIDCFTYLFLVKN-EFFID-KKV  148 (173)
Q Consensus       128 ~~~~~~~~~~~~~-~~g~~-~~~  148 (173)
                      ++++.+.+.+++. .+|+. +.+
T Consensus       163 ~~~~~~~~~~~~~~~lgk~pv~v  185 (286)
T PRK07819        163 SEATVARAEEFASDVLGKQVVRA  185 (286)
T ss_pred             CHHHHHHHHHHHHHhCCCCceEe
Confidence            8899999999977 59964 444

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.76  E-value=3.7e-17  Score=127.81  Aligned_cols=146  Identities=14%  Similarity=0.173  Sum_probs=104.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcC------------CceecChhhhhcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLG------------GIRSASPMDAGKDV   59 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g------------~~~~~~~~~~~~~~   59 (173)
                      +||+|||+|.||.+||+.|+++|++|++||+++++++.           +.+.|            .....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            68999999999999999999999999999999988753           22222            12233334668999


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHH-hcCCceeeece-----eeeee---cCH
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTF-TGNLTFYILER-----MFLIS---SSI  129 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l-~~~g~~~v~~~-----~~~~~---g~~  129 (173)
                      |+||.|+|++.++++.++  .++.+.++++++|+ ++|+.++....+..+.. +-.++||++.+     +.++.   +++
T Consensus        85 D~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            999999998888877776  34777788888886 56676665443332211 11366776654     33333   467


Q ss_pred             hhHHHHHHHHHhhCCce-eecC
Q 044797          130 DCFTYLFLVKNEFFIDK-KVNI  150 (173)
Q Consensus       130 ~~~~~~~~~~~~~g~~~-~~g~  150 (173)
                      +..+.++++++.+|... +++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d  184 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQD  184 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecC
Confidence            88999999999999754 4443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.76  E-value=2e-17  Score=137.39  Aligned_cols=142  Identities=11%  Similarity=0.102  Sum_probs=108.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~   58 (173)
                      +||+|||+|.||+.||..++++|++|++||++++++++.           .+.|             ++.++++++ +.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            689999999999999999999999999999999988653           2233             335667755 569


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHh----cCCceeeece-----eeeeec-
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFT----GNLTFYILER-----MFLISS-  127 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~----~~g~~~v~~~-----~~~~~g-  127 (173)
                      ||+||.|+|++.++++.+++  ++.+.++++.++. ++|+.++.   ++.+.+.    ..|.||++..     +-+++| 
T Consensus        85 aDlVIEav~E~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~  159 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVMALVEVVSGL  159 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccCceEEEeCCC
Confidence            99999999998899888873  4666777777665 45555554   3444443    3588998843     556677 


Q ss_pred             --CHhhHHHHHHHHHhhCC-ceeecC
Q 044797          128 --SIDCFTYLFLVKNEFFI-DKKVNI  150 (173)
Q Consensus       128 --~~~~~~~~~~~~~~~g~-~~~~g~  150 (173)
                        ++++++.+.++++.+|+ .++++.
T Consensus       160 ~Ts~e~~~~~~~l~~~lgk~pv~v~d  185 (503)
T TIGR02279       160 ATAAEVAEQLYETALAWGKQPVHCHS  185 (503)
T ss_pred             CCCHHHHHHHHHHHHHcCCeeeEeCC
Confidence              78999999999999996 456664

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.76  E-value=4.7e-17  Score=141.19  Aligned_cols=163  Identities=12%  Similarity=0.142  Sum_probs=126.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHcCCc--eecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFMLGGI--RSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |..||+|||+|+||.++++.|.+.|  ++|++||+++++.+.+.+.|+.  ...+..++++++|+||+|+| ++.+++++
T Consensus         2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~vl   80 (735)
T PRK14806          2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-VLAMEKVL   80 (735)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-HHHHHHHH
Confidence            4579999999999999999999998  4899999999998887777764  34567778899999999999 56778887


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeeee----cCHhh
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLIS----SSIDC  131 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~~----g~~~~  131 (173)
                         +++.+.++++.+|++.++.+....+.+.+.+....++++.. +                    .+.+.    ++++.
T Consensus        81 ---~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~  157 (735)
T PRK14806         81 ---ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA  157 (735)
T ss_pred             ---HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence               46777888899999999988777888888775444555321 1                    11222    34566


Q ss_pred             HHHHHHHHHhhCCce-e---------ecCCCchHh-HhHHhHhhhHhhhhc
Q 044797          132 FTYLFLVKNEFFIDK-K---------VNISGQEIH-WGYLKINYFIRVMTD  171 (173)
Q Consensus       132 ~~~~~~~~~~~g~~~-~---------~g~~Gsg~a-~~~~~~~~~~~~~~~  171 (173)
                      .+.++++++.+|... +         ++.+|++|+ |.|.    ++++|.+
T Consensus       158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~----l~~~l~~  204 (735)
T PRK14806        158 LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFS----LVDQLAN  204 (735)
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHH----HHHHHhh
Confidence            788999999999633 2         478999999 7887    7777655

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.76  E-value=6.5e-17  Score=125.17  Aligned_cols=143  Identities=15%  Similarity=0.067  Sum_probs=110.8

Q ss_pred             CeEEEEeCChh--------------------hHHHHHHHHHCCCeEEEEcCChHHH-----HHHHHcCCceecChhhhhc
Q 044797            3 SKVGFVGLDEY--------------------SVDMAASLIRSGYKVQAFEISDPLV-----DKFFMLGGIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~m--------------------G~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~   57 (173)
                      |||.|.|+|+-                    |++||++|+++||+|++|||++++.     +.+.+.|+..++++.++++
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa   80 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK   80 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence            58999999974                    8899999999999999999987654     3577789999999999999


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHH-Hh--cC--Cc---------------ee
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKT-FT--GN--LT---------------FY  117 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~-l~--~~--g~---------------~~  117 (173)
                      ++|+||+|+|++.++++++   +++.+++++|+++||+||++|....+.-+. |+  +.  |+               +|
T Consensus        81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~  157 (341)
T TIGR01724        81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHY  157 (341)
T ss_pred             CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCcee
Confidence            9999999999999899997   568889999999999999999987655544 33  22  22               12


Q ss_pred             eeceeeeee---cCHhhHHHHHHHHHhhCCceee
Q 044797          118 ILERMFLIS---SSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       118 v~~~~~~~~---g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                      +-.+....+   .+++..+++..+.+..+...|+
T Consensus       158 ~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~  191 (341)
T TIGR01724       158 VIGGKPTAGKEMATEEQISKCVELAKSTGKKAYV  191 (341)
T ss_pred             eeccccccccccCCHHHHHHHHHHHHHhCCCeee
Confidence            222212221   2356677788888888876553

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.74  E-value=7.1e-17  Score=126.80  Aligned_cols=158  Identities=9%  Similarity=-0.049  Sum_probs=110.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC-ChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI-SDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~-~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||+|+||++++++|..+|++|+++++ ++++.+.+.+.|+... +..++++++|+|++++|+..+...+.   ++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~e   79 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AE   79 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HH
Confidence            6899999999999999999999998877654 4556666666787654 58888999999999999543555444   45


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-Cceee---------------eceeeeee-----cCHhhHHHHHHHHH
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-LTFYI---------------LERMFLIS-----SSIDCFTYLFLVKN  140 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g~~~v---------------~~~~~~~~-----g~~~~~~~~~~~~~  140 (173)
                      +.+.++++. +++.+.+..  ...+...+... .+-.+               ..++..+.     .+.+..+.+..+++
T Consensus        80 i~~~l~~g~-iVs~aaG~~--i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~  156 (314)
T TIGR00465        80 IQPLLKEGK-TLGFSHGFN--IHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAK  156 (314)
T ss_pred             HHhhCCCCc-EEEEeCCcc--HhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHH
Confidence            777787776 666655432  34445555321 12111               11232331     23456788999999


Q ss_pred             hhCCc-------e---e---------ecCCCchHhHhHHhHhhhHhhhhc
Q 044797          141 EFFID-------K---K---------VNISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       141 ~~g~~-------~---~---------~g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      .+|..       .   +         ++.+||+|+|+|+    ++|+|..
T Consensus       157 ~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~----~~ealv~  202 (314)
T TIGR00465       157 AIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKA----GFDTLVE  202 (314)
T ss_pred             HcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHH----HHHHHHH
Confidence            99976       2   2         4789999999998    7777753

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.73  E-value=1.5e-16  Score=123.52  Aligned_cols=149  Identities=11%  Similarity=0.138  Sum_probs=110.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-eecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |||+|||+|.||..++..|.++|++|++||+++++.+.+.+.|.. ...+..+.++++|+||+|+| +..+.+++   ++
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp-~~~~~~~~---~~   76 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALP-IGLLLPPS---EQ   76 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCC-HHHHHHHH---HH
Confidence            489999999999999999999999999999999998888777643 23233356789999999999 45566666   56


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-ce--------------------eeee----ecCHhhHHHHH
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-ER--------------------MFLI----SSSIDCFTYLF  136 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-~~--------------------~~~~----~g~~~~~~~~~  136 (173)
                      +.+.++++.+|+|+++.++...+.+.+...    +|+. .+                    .+.+    .++++..+.++
T Consensus        77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~----~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~  152 (279)
T PRK07417         77 LIPALPPEAIVTDVGSVKAPIVEAWEKLHP----RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE  152 (279)
T ss_pred             HHHhCCCCcEEEeCcchHHHHHHHHHHhhC----CceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence            778888999999999988776665555432    2332 11                    1111    23567788999


Q ss_pred             HHHHhhCCce-ee---------cCCCchHhHhH
Q 044797          137 LVKNEFFIDK-KV---------NISGQEIHWGY  159 (173)
Q Consensus       137 ~~~~~~g~~~-~~---------g~~Gsg~a~~~  159 (173)
                      ++++.+|... ++         ...+..|+|..
T Consensus       153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a  185 (279)
T PRK07417        153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVS  185 (279)
T ss_pred             HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence            9999999643 44         45667777654

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=3.1e-17  Score=127.40  Aligned_cols=157  Identities=17%  Similarity=0.242  Sum_probs=133.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc---C--CceecChhhhh---cCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML---G--GIRSASPMDAG---KDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g--~~~~~~~~~~~---~~~dvii~~v~~~~~~~~   74 (173)
                      +.||.||++.||+.++.+...+|+.|.+|||+.++.+.+.+.   |  +....|+++.+   +...+|++.++....++.
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            589999999999999999999999999999999999887654   2  34566777764   568899999998888888


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhh
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEF  142 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~  142 (173)
                      .+   +++.++|.+|++|||-++....++.+..+.+.+.|+.|+..+            ..|.+|+++++..++++|..+
T Consensus        87 ~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~i  163 (487)
T KOG2653|consen   87 FI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKI  163 (487)
T ss_pred             HH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHH
Confidence            88   689999999999999998877777777888888999998642            888999999999999998777


Q ss_pred             C--------CceeecCCCchHhHhHHhHh
Q 044797          143 F--------IDKKVNISGQEIHWGYLKIN  163 (173)
Q Consensus       143 g--------~~~~~g~~Gsg~a~~~~~~~  163 (173)
                      .        +..|+|..|+| +|++++=|
T Consensus       164 aakv~~~epCc~wvG~~GaG-hfVKMVHN  191 (487)
T KOG2653|consen  164 AAKVSDGEPCCDWVGEGGAG-HFVKMVHN  191 (487)
T ss_pred             HHHhcCCCCCeeeecCCCCc-cchhhhcc
Confidence            4        13689999999 78887644

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.72  E-value=2.4e-17  Score=108.18  Aligned_cols=89  Identities=19%  Similarity=0.326  Sum_probs=75.5

Q ss_pred             eEEEEeCChhhHHHHHHHHHCC---CeEE-EEcCChHHHHHHHHc-CCceec-ChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            4 KVGFVGLDEYSVDMAASLIRSG---YKVQ-AFEISDPLVDKFFML-GGIRSA-SPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g---~~V~-~~d~~~~~~~~~~~~-g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ||+|||+|+||++++++|.++|   ++|. +++|++++.+++.+. +..... +..++++++|+||+|+| |+++.+++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH-
Confidence            7999999999999999999999   8998 459999999888665 666555 78999999999999999 77888888 


Q ss_pred             CccchhhcCCCCCEEEEcCC
Q 044797           78 GHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st   97 (173)
                        +++ +...++++++|+++
T Consensus        79 --~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   79 --SEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             --HHH-HHHHTTSEEEEEST
T ss_pred             --HHH-hhccCCCEEEEeCC
Confidence              456 67789999999865

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.72  E-value=3.5e-16  Score=122.15  Aligned_cols=161  Identities=12%  Similarity=0.171  Sum_probs=112.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH--------------cCC-------------ceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM--------------LGG-------------IRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--------------~g~-------------~~~~~~~~~   55 (173)
                      .||+|||+|.||.++|..|+.+|++|++||++++++++..+              .+.             ...++. +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            68999999999999999999999999999999988764321              121             233344 56


Q ss_pred             hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eeee-
Q 044797           56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLI-  125 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~-  125 (173)
                      ++++|+||.|+|++..++..++  .++.+.++++++++++++..  ...++++.+..    .|.||+...     +-.+ 
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~  158 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEVVR  158 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEEeC
Confidence            7899999999997765555554  35777788888887665543  34566666643    266666532     1122 


Q ss_pred             --ecCHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhhhHhhh
Q 044797          126 --SSSIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       126 --~g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                        ..++++++.+.++++.+|+ +.++++.+...+ -.+..|++-|++
T Consensus       159 g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~-nRl~~~~~~ea~  204 (291)
T PRK06035        159 AALTSEETFNTTVELSKKIGKIPIEVADVPGFFT-TRFIEGWLLEAI  204 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeH-HHHHHHHHHHHH
Confidence              3357889999999999996 456776555544 345566666664

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.72  E-value=7e-16  Score=121.28  Aligned_cols=154  Identities=12%  Similarity=0.140  Sum_probs=117.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCC--ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGG--IRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      .++|+|||+|.||..+++.|.+.|+  +|++|||++++.+.+.+.|.  ....+..++++++|+||+|+|. .....++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH-
Confidence            4799999999999999999999985  89999999998888877764  2445677788999999999995 4556666 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeee----ecCHhhH
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLI----SSSIDCF  132 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~----~g~~~~~  132 (173)
                        +++.+.++++.+++++++.+....+.+.+.+. .+++++.. +                    .+.+    +++++..
T Consensus        84 --~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~  160 (307)
T PRK07502         84 --AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAV  160 (307)
T ss_pred             --HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHH
Confidence              45667788999999998888777776666553 35555542 1                    1112    3456678


Q ss_pred             HHHHHHHHhhCCce-e---------ecCCCchHhHhHH
Q 044797          133 TYLFLVKNEFFIDK-K---------VNISGQEIHWGYL  160 (173)
Q Consensus       133 ~~~~~~~~~~g~~~-~---------~g~~Gsg~a~~~~  160 (173)
                      +.++++++.+|... +         ++..++.|+|...
T Consensus       161 ~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~  198 (307)
T PRK07502        161 ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAY  198 (307)
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHH
Confidence            88999999999643 2         4678999998655

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.71  E-value=1.3e-16  Score=119.28  Aligned_cols=160  Identities=16%  Similarity=0.260  Sum_probs=119.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHH-HHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDK-FFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~-~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      |++||||.|+|..++++++.+.|.    ++..+-.+...... +++.|+..+.+..+.++.+|+++++++ |+.+..++ 
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vl-   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVL-   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chhHHHHh-
Confidence            589999999999999999999984    56666664444444 677788887777889999999999999 78888888 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeee-------ce--eeeeec--CHhhHHHHHHHHHhhCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYIL-------ER--MFLISS--SIDCFTYLFLVKNEFFI  144 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~-------~~--~~~~~g--~~~~~~~~~~~~~~~g~  144 (173)
                        .++.+.+..++++++...+.  +...+++.+..  +-++...       ..  ++..+.  ..+..+.++.+++..|.
T Consensus        79 --s~~~~~~~~~~iivS~aaG~--tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~  154 (267)
T KOG3124|consen   79 --SEIKPKVSKGKIIVSVAAGK--TLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGL  154 (267)
T ss_pred             --hcCccccccceEEEEEeecc--cHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCc
Confidence              45555577889999987665  44566666651  2233221       11  222222  24566889999999996


Q ss_pred             c---------eeecCCCchHhHhHHhHhhhHhhhhcC
Q 044797          145 D---------KKVNISGQEIHWGYLKINYFIRVMTDG  172 (173)
Q Consensus       145 ~---------~~~g~~Gsg~a~~~~~~~~~~~~~~~~  172 (173)
                      .         .++|.+||||||+|+    +||+|+||
T Consensus       155 ~~evpE~~iDavTgLsGSgPAy~f~----~ieaLadG  187 (267)
T KOG3124|consen  155 CEEVPEKCIDAVTGLSGSGPAYVFV----AIEALADG  187 (267)
T ss_pred             ceeCcHHhhhHHhhccCCcHHHHHH----HHHHHhcc
Confidence            3         357999999999999    99999997

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.71  E-value=8.2e-16  Score=121.03  Aligned_cols=146  Identities=11%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----C--------------CceecChhhhhcCCCEE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----G--------------GIRSASPMDAGKDVSAL   62 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~~dvi   62 (173)
                      +++|+|||+|.||.+++..|+++|++|++||+++++.+++.+.     +              +..+++..++++++|+|
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV   83 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV   83 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence            4689999999999999999999999999999999887765431     1              23456777888999999


Q ss_pred             EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eeeeec---CHh
Q 044797           63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLISS---SID  130 (173)
Q Consensus        63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~g---~~~  130 (173)
                      |+|+|++.+....++  .++.+.++++.+|++.+++.+  ..++.+.+..    .+.++...+     +.++.+   +++
T Consensus        84 i~av~~~~~~~~~v~--~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~  159 (311)
T PRK06130         84 IEAVPEKLELKRDVF--ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQ  159 (311)
T ss_pred             EEeccCcHHHHHHHH--HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHH
Confidence            999997654443332  345556666666654444322  3466666643    144444332     333444   467


Q ss_pred             hHHHHHHHHHhhCC-ceeecCC
Q 044797          131 CFTYLFLVKNEFFI-DKKVNIS  151 (173)
Q Consensus       131 ~~~~~~~~~~~~g~-~~~~g~~  151 (173)
                      ..+.++++++.+|. ..+++..
T Consensus       160 ~~~~v~~l~~~~G~~~v~~~~d  181 (311)
T PRK06130        160 TVATTMALLRSIGKRPVLVKKD  181 (311)
T ss_pred             HHHHHHHHHHHcCCEEEEEcCC
Confidence            89999999999996 4556543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.70  E-value=7.6e-16  Score=121.20  Aligned_cols=142  Identities=10%  Similarity=-0.041  Sum_probs=105.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c---------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L---------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~~dvi   62 (173)
                      +||+|||+|.||..||..++.+|++|++||++++..+++.+           .         .+..++++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999999887654322           1         124566788889999999


Q ss_pred             EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeeecCHh
Q 044797           63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLISSSID  130 (173)
Q Consensus        63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~g~~~  130 (173)
                      +.|+|++.++++.++  .++.+.++++++ +.+||++ ....++.+.+..    .+.||++.+        +.....+++
T Consensus        88 iEavpE~l~vK~~lf--~~l~~~~~~~aI-laSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e  163 (321)
T PRK07066         88 QESAPEREALKLELH--ERISRAAKPDAI-IASSTSG-LLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPE  163 (321)
T ss_pred             EECCcCCHHHHHHHH--HHHHHhCCCCeE-EEECCCc-cCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHH
Confidence            999999888988887  468888888884 4444432 234556665543    255666554        222245678


Q ss_pred             hHHHHHHHHHhhCC-ceee
Q 044797          131 CFTYLFLVKNEFFI-DKKV  148 (173)
Q Consensus       131 ~~~~~~~~~~~~g~-~~~~  148 (173)
                      +.+.+..++..+|+ .+.+
T Consensus       164 ~~~~~~~f~~~lGk~pV~v  182 (321)
T PRK07066        164 AVDAAMGIYRALGMRPLHV  182 (321)
T ss_pred             HHHHHHHHHHHcCCEeEec
Confidence            88999999999995 3444

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.70  E-value=7.2e-16  Score=120.14  Aligned_cols=143  Identities=16%  Similarity=0.177  Sum_probs=101.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------------CCceecChhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------------GGIRSASPMDAG   56 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------------g~~~~~~~~~~~   56 (173)
                      ++||+|||+|.||.++|..++.+|++|++||+++++++++.+.                         .+..+++.++++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            3689999999999999999999999999999998876554321                         233567788889


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhc----CCceeeece-----eee--
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTG----NLTFYILER-----MFL--  124 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~--  124 (173)
                      +++|+||.|+|++.+++..++  +++.+.++++++|.+. |+..+.   ++.+.+..    .|.|+....     +-+  
T Consensus        83 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~---~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~  157 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPS---QFAEATGRPEKFLALHFANEIWKNNTAEIMG  157 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHH---HHHhhcCCcccEEEEcCCCCCCcCCeEEEeC
Confidence            999999999997655554443  4577788888888544 444443   33444322    244444332     222  


Q ss_pred             -eecCHhhHHHHHHHHHhhCCc-eeec
Q 044797          125 -ISSSIDCFTYLFLVKNEFFID-KKVN  149 (173)
Q Consensus       125 -~~g~~~~~~~~~~~~~~~g~~-~~~g  149 (173)
                       ...++++.+.+..++..+|+. +.+.
T Consensus       158 ~~~t~~~~~~~~~~~~~~~Gk~pv~v~  184 (287)
T PRK08293        158 HPGTDPEVFDTVVAFAKAIGMVPIVLK  184 (287)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence             346678899999999999964 3443

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.69  E-value=1.4e-15  Score=117.82  Aligned_cols=143  Identities=16%  Similarity=0.224  Sum_probs=104.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCc-eecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |||+|||+|.||.+++++|.+.|+  +|++|||++++.+.+.+.|.. ...+..++. ++|+||+|+| +..+.+++   
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp-~~~~~~~~---   75 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIP-VDAIIEIL---   75 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCc-HHHHHHHH---
Confidence            489999999999999999999996  789999999998888777753 345666655 4999999999 45566676   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee---------------------ceeeeee----cCHhhHHH
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL---------------------ERMFLIS----SSIDCFTY  134 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~---------------------~~~~~~~----g~~~~~~~  134 (173)
                      .++.+ ++++++|+|.++..+...+.+.+..   +..|+.                     ...+.+.    ++++..+.
T Consensus        76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~~---~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~  151 (275)
T PRK08507         76 PKLLD-IKENTTIIDLGSTKAKIIESVPKHI---RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER  151 (275)
T ss_pred             HHHhc-cCCCCEEEECccchHHHHHHHHHhc---CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence            46777 8899999999887776666555442   112221                     1123333    34567789


Q ss_pred             HHHHHHhhCC-ceeecCCCch
Q 044797          135 LFLVKNEFFI-DKKVNISGQE  154 (173)
Q Consensus       135 ~~~~~~~~g~-~~~~g~~Gsg  154 (173)
                      ++++++.+|. +.++++.+..
T Consensus       152 v~~l~~~~G~~~~~~~~~~hD  172 (275)
T PRK08507        152 AKEIFSGLGMRIVYMDAKEHD  172 (275)
T ss_pred             HHHHHHHhCCEEEEeCHHHHH
Confidence            9999999994 5666655444

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.69  E-value=2.9e-15  Score=122.80  Aligned_cols=153  Identities=14%  Similarity=0.178  Sum_probs=117.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-HHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-FMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |+|+||| +|.||.++++.|.++|++|++|+|++++...+ .+.|+....+..++++++|+||+|+| +..+.+++   +
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp-~~~~~~vl---~   76 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVP-INVTEDVI---K   76 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecC-HHHHHHHH---H
Confidence            4899997 89999999999999999999999998876444 34577767778888999999999999 45667777   5


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e-------------eeeee---cCHhhHHHHHHHHHhhC
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R-------------MFLIS---SSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~-------------~~~~~---g~~~~~~~~~~~~~~~g  143 (173)
                      ++.+.++++++++|++++.+...+.+.+.+. .+.+|+.. +             .++..   .+++..+.++++++.+|
T Consensus        77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G  155 (437)
T PRK08655         77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG  155 (437)
T ss_pred             HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence            6778899999999999988888888887764 35555543 1             22222   23567788999999999


Q ss_pred             Ccee----------ecCCCchHhHhHH
Q 044797          144 IDKK----------VNISGQEIHWGYL  160 (173)
Q Consensus       144 ~~~~----------~g~~Gsg~a~~~~  160 (173)
                      ...+          ++.....|++.+.
T Consensus       156 ~~v~~~~~e~HD~~~a~vs~lph~~a~  182 (437)
T PRK08655        156 ARVIVTSPEEHDRIMSVVQGLTHFAYI  182 (437)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence            6433          2445566776654

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.68  E-value=3.6e-15  Score=119.58  Aligned_cols=153  Identities=15%  Similarity=0.123  Sum_probs=114.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc----eecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI----RSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||+|.||.++++.|.++|+++.+|++++++.+.....+..    ..++..+++++||+||+|+| +..+..++  
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP-~~~~~~vl--   77 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVP-VDATAALL--   77 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence            479999999999999999999999999999887765544433322    23456778899999999999 45677787  


Q ss_pred             ccchhh-cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeeee----cCHhhH
Q 044797           79 HEGVLK-GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLIS----SSIDCF  132 (173)
Q Consensus        79 ~~~i~~-~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~~----g~~~~~  132 (173)
                       +++.+ .++++.++.|.++++....+.+.+.+ ..+.+|+.. +                    .+.+.    .+++.+
T Consensus        78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~  155 (359)
T PRK06545         78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV  155 (359)
T ss_pred             -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence             45665 47889999999999887777776663 345556542 1                    12333    356778


Q ss_pred             HHHHHHHHhhCCce-e---------ecCCCchHhHhHH
Q 044797          133 TYLFLVKNEFFIDK-K---------VNISGQEIHWGYL  160 (173)
Q Consensus       133 ~~~~~~~~~~g~~~-~---------~g~~Gsg~a~~~~  160 (173)
                      +.++.+++.+|... +         ++.++++|+|.+.
T Consensus       156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~  193 (359)
T PRK06545        156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS  193 (359)
T ss_pred             HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH
Confidence            89999999999643 2         4789999998764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.66  E-value=2.6e-15  Score=118.13  Aligned_cols=127  Identities=11%  Similarity=0.149  Sum_probs=95.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      |||+|||+|.||+++|+.|.++|++|++|+|+++             .++.++++++|+|++++|+ .++++++   +++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l   67 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQV   67 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHH
Confidence            6999999999999999999999999999999863             4577888899999999996 5788887   456


Q ss_pred             hh-cCCCCCEEEEcCC-CCHHHHHHHHHHHh----cCCceeeec-------------eeeeeecCHhhHHHHHHHHHhhC
Q 044797           83 LK-GLQKGAVIILQST-ILPSHMQKLEKTFT----GNLTFYILE-------------RMFLISSSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        83 ~~-~l~~g~~ii~~st-~~~~~~~~l~~~l~----~~g~~~v~~-------------~~~~~~g~~~~~~~~~~~~~~~g  143 (173)
                      .+ .++++++++++++ ..|.+.+.+.+.+.    ...+..+..             .+++.+++.+..+.++++++..+
T Consensus        68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~  147 (308)
T PRK14619         68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSER  147 (308)
T ss_pred             HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCc
Confidence            55 3678899999876 55554444444333    223322221             15566778889999999999887


Q ss_pred             Cce
Q 044797          144 IDK  146 (173)
Q Consensus       144 ~~~  146 (173)
                      ...
T Consensus       148 ~~~  150 (308)
T PRK14619        148 FRV  150 (308)
T ss_pred             EEE
Confidence            544

>PLN02256 arogenate dehydrogenase

Probab=99.65  E-value=1.9e-14  Score=112.83  Aligned_cols=138  Identities=15%  Similarity=0.130  Sum_probs=103.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      .++|+|||+|.||..+++.|.+.|++|++||+++.. +...+.|+....+..+++ .++|+|++|+| +..+.+++   +
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp-~~~~~~vl---~  110 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTS-ILSTEAVL---R  110 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecC-HHHHHHHH---H
Confidence            469999999999999999999999999999999743 444456777667777776 47999999999 56777877   3


Q ss_pred             ch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec---------------eeeeeec--------CHhhHHHHH
Q 044797           81 GV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE---------------RMFLISS--------SIDCFTYLF  136 (173)
Q Consensus        81 ~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~---------------~~~~~~g--------~~~~~~~~~  136 (173)
                      ++ .+.++++++++|+++++....+.+.+.+.. +.+|+..               ..+++..        +++..+.++
T Consensus       111 ~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  189 (304)
T PLN02256        111 SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFL  189 (304)
T ss_pred             hhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHH
Confidence            45 466889999999999877777777776643 3444321               1222222        456677889


Q ss_pred             HHHHhhCCc
Q 044797          137 LVKNEFFID  145 (173)
Q Consensus       137 ~~~~~~g~~  145 (173)
                      .+++.+|..
T Consensus       190 ~l~~~lGa~  198 (304)
T PLN02256        190 DIFEEEGCR  198 (304)
T ss_pred             HHHHHCCCE
Confidence            999999853

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.64  E-value=9.9e-15  Score=116.19  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=106.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----------------ecChhhhhcCCCEEE
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----------------SASPMDAGKDVSALV   63 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~dvii   63 (173)
                      |||||+|||+|.||+.+|..|.++|++|++|+|++. .+.+.+.|...                 .++. +.++++|+||
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   78 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL   78 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence            889999999999999999999999999999999753 35555554321                 2233 5567899999


Q ss_pred             EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeee----c---------eeeeee
Q 044797           64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYIL----E---------RMFLIS  126 (173)
Q Consensus        64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~----~---------~~~~~~  126 (173)
                      +|+|.+ +..+++   +.+.+.+.++++|++++++ ....+.+.+.+.+.    ++.++.    .         +.+.++
T Consensus        79 l~vk~~-~~~~~~---~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~  153 (341)
T PRK08229         79 VTVKSA-ATADAA---AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAIE  153 (341)
T ss_pred             EEecCc-chHHHH---HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEec
Confidence            999954 566776   4677788889998888653 33445666666432    111110    0         011222


Q ss_pred             cCHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhh
Q 044797          127 SSIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINY  164 (173)
Q Consensus       127 g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~  164 (173)
                       ..+.++.+.++|+..|. ..+.++.+.+ .|.++++|.
T Consensus       154 -~~~~~~~~~~~l~~~g~~~~~~~di~~~-~w~Kl~~N~  190 (341)
T PRK08229        154 -ASPALRPFAAAFARAGLPLVTHEDMRAV-QWAKLLLNL  190 (341)
T ss_pred             -CCchHHHHHHHHHhcCCCceecchhHHH-HHHHHHHHh
Confidence             23456788899988885 4566776655 667777774

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.64  E-value=1.6e-14  Score=112.34  Aligned_cols=142  Identities=15%  Similarity=0.165  Sum_probs=99.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~   58 (173)
                      +||+|||+|.||.+++..++++|++|++||++++++++           +.+.|             +..+++.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            58999999999999999999999999999999988752           33333             23345554 4789


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eee---ee
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFL---IS  126 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~---~~  126 (173)
                      ||+||+|+|++..++..++  .++.+.+++++++.+.+++.+  ...+.+.+..    .+.|+....     +-+   -+
T Consensus        83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~--~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~  158 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLS--ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLA  158 (282)
T ss_pred             CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCC--HHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCC
Confidence            9999999997666664444  457788888888854443322  2256666532    244444321     222   24


Q ss_pred             cCHhhHHHHHHHHHhhCCc-eeec
Q 044797          127 SSIDCFTYLFLVKNEFFID-KKVN  149 (173)
Q Consensus       127 g~~~~~~~~~~~~~~~g~~-~~~g  149 (173)
                      .+++..+.++++++.+|+. .+++
T Consensus       159 t~~e~~~~~~~l~~~lGk~pv~~~  182 (282)
T PRK05808        159 TSDATHEAVEALAKKIGKTPVEVK  182 (282)
T ss_pred             CCHHHHHHHHHHHHHcCCeeEEec
Confidence            5678899999999999974 4453

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.63  E-value=4.2e-15  Score=108.73  Aligned_cols=107  Identities=19%  Similarity=0.298  Sum_probs=77.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~dvi   62 (173)
                      |||+|||+|++|.++|..|+++|++|+++|.++++++.+.+-                    ....+++..+++.++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            699999999999999999999999999999999998876431                    123566778889999999


Q ss_pred             EEeccChh---------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHH-HHHhc
Q 044797           63 VVVISHVD---------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLE-KTFTG  112 (173)
Q Consensus        63 i~~v~~~~---------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~-~~l~~  112 (173)
                      |+|+|.|.         .+..++   +.+.++++++++++..||..|.+++++. ..+++
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            99998653         233444   5678889999999999999999998444 44443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.62  E-value=1e-14  Score=111.30  Aligned_cols=137  Identities=13%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHH
Q 044797           26 YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQ  104 (173)
Q Consensus        26 ~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~  104 (173)
                      ++|++|+|++++.+.+.+. |+....++.++++++|+||+|+| |+++++++   +++.+.+.++++|++++.+-  ..+
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi--~~~   83 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGV--TLE   83 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCC--CHH
Confidence            6899999999998887654 87778888898999999999999 88899988   45666667788999998764  345


Q ss_pred             HHHHHHhc-CCc-eeee-------ceeeeeecC----HhhHHHHHHHHHhhCCceee---------cCCCchHhHhHHhH
Q 044797          105 KLEKTFTG-NLT-FYIL-------ERMFLISSS----IDCFTYLFLVKNEFFIDKKV---------NISGQEIHWGYLKI  162 (173)
Q Consensus       105 ~l~~~l~~-~g~-~~v~-------~~~~~~~g~----~~~~~~~~~~~~~~g~~~~~---------g~~Gsg~a~~~~~~  162 (173)
                      .+.+.+.. ..+ +.+.       .++..+..+    ++..+.++.+|+.+|...++         +.+||||||+|+  
T Consensus        84 ~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~--  161 (245)
T TIGR00112        84 KLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL--  161 (245)
T ss_pred             HHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHH--
Confidence            67777642 112 2111       124444433    34568899999999986654         789999999998  


Q ss_pred             hhhHhhhhcC
Q 044797          163 NYFIRVMTDG  172 (173)
Q Consensus       163 ~~~~~~~~~~  172 (173)
                        |+++|.|+
T Consensus       162 --~~~al~~~  169 (245)
T TIGR00112       162 --FIEALADA  169 (245)
T ss_pred             --HHHHHHHH
Confidence              77777653

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK07574 formate dehydrogenase; Provisional

Probab=99.60  E-value=1.3e-14  Score=116.75  Aligned_cols=112  Identities=12%  Similarity=0.056  Sum_probs=96.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.|...|++|.+|||++...+...+.++....+++++++.||+|++++|...+++.++.  .+.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~  270 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADV  270 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHH
Confidence            689999999999999999999999999999986443433445666667899999999999999998888888883  467


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|+++||++++...+.+.|.+.|+...+.
T Consensus       271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~  304 (385)
T PRK07574        271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA  304 (385)
T ss_pred             HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence            8899999999999999999999999999875553

>PLN03139 formate dehydrogenase; Provisional

Probab=99.58  E-value=2.2e-14  Score=115.30  Aligned_cols=112  Identities=11%  Similarity=0.021  Sum_probs=96.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.|...|++|.+||+++...+...+.|+....++++++++||+|++++|..++++.++.  .+.
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~  277 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KER  277 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHH
Confidence            589999999999999999999999999999986444444455766667899999999999999998888888883  467


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|+++||++.+...+.+.+.+.|+...+.
T Consensus       278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~  311 (386)
T PLN03139        278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG  311 (386)
T ss_pred             HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence            8899999999999999999999999999875553

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.58  E-value=3.1e-14  Score=114.73  Aligned_cols=130  Identities=14%  Similarity=0.195  Sum_probs=97.4

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      +++|+||| +|.||..+++.|.++|++|++||+++.             .+..+++++||+||+|+|.. ....++   .
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~---~  160 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVI---A  160 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHH---H
Confidence            47899998 999999999999999999999998641             24567788999999999954 456666   4


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-----c--------e-eeeeec-CHhhHHHHHHHHHhhCC-
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-----E--------R-MFLISS-SIDCFTYLFLVKNEFFI-  144 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-----~--------~-~~~~~g-~~~~~~~~~~~~~~~g~-  144 (173)
                      ++.+ ++++++++|++++++.....+.+.+..   .|+.     .        . +++..+ +++.++.++++++.+|. 
T Consensus       161 ~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~~---~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~  236 (374)
T PRK11199        161 RLPP-LPEDCILVDLTSVKNAPLQAMLAAHSG---PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR  236 (374)
T ss_pred             HHhC-CCCCcEEEECCCccHHHHHHHHHhCCC---CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE
Confidence            5666 889999999999888777777765432   3441     1        1 333333 45678889999999996 


Q ss_pred             ceeecCCC
Q 044797          145 DKKVNISG  152 (173)
Q Consensus       145 ~~~~g~~G  152 (173)
                      +.++++.+
T Consensus       237 v~~~~~~~  244 (374)
T PRK11199        237 LHRISAVE  244 (374)
T ss_pred             EEECCHHH
Confidence            44554433

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.58  E-value=3e-14  Score=103.83  Aligned_cols=137  Identities=12%  Similarity=0.101  Sum_probs=93.3

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c-------------CCceecChhhhhcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L-------------GGIRSASPMDAGKDV   59 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~~   59 (173)
                      ||+|||+|.||..+|..++.+|++|++||++++.++...+           .             .+..+++++++. ++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            6999999999999999999999999999999987654211           1             234567788877 99


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeeec
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLISS  127 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~g  127 (173)
                      |+||.++|.+...++-++  .++.+.++++.+|.+.++.-+.  .++.+.+..    .|.||+..+        +..-..
T Consensus        80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T  155 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSI--SELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKT  155 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS
T ss_pred             heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCH--HHHHhccCcCceEEEEecccccccCceEEEeCCCCC
Confidence            999999998887777665  4677888899998766554432  344554432    256776543        233345


Q ss_pred             CHhhHHHHHHHHHhhCCc
Q 044797          128 SIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       128 ~~~~~~~~~~~~~~~g~~  145 (173)
                      ++++.+.+..++..+|+.
T Consensus       156 ~~~~~~~~~~~~~~~gk~  173 (180)
T PF02737_consen  156 SPETVDRVRALLRSLGKT  173 (180)
T ss_dssp             -HHHHHHHHHHHHHTT-E
T ss_pred             CHHHHHHHHHHHHHCCCE
Confidence            578889999999999863

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.58  E-value=1.3e-13  Score=103.57  Aligned_cols=146  Identities=12%  Similarity=0.132  Sum_probs=100.6

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------CC--c-eecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------GG--I-RSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g~--~-~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      |||+||| +|+||+++++.|.++|++|.+|+|++++.+.+.+.        |.  . ...+..++++++|+||+|+| ++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence            5899997 89999999999999999999999999888765442        21  1 22356778889999999999 56


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHH---------------HHHHHHHHHhcCCceeeec---------------
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPS---------------HMQKLEKTFTGNLTFYILE---------------  120 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~---------------~~~~l~~~l~~~g~~~v~~---------------  120 (173)
                      .+.+++   +++.+.+. +++++|++.....               ..+.+++.+.. +.+++..               
T Consensus        80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~~  154 (219)
T TIGR01915        80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDDE  154 (219)
T ss_pred             HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCCC
Confidence            677777   34555554 5899998765332               12445555532 1222211               


Q ss_pred             --eeeeeecC-HhhHHHHHHHHHhh-CC-ceeecCCCch
Q 044797          121 --RMFLISSS-IDCFTYLFLVKNEF-FI-DKKVNISGQE  154 (173)
Q Consensus       121 --~~~~~~g~-~~~~~~~~~~~~~~-g~-~~~~g~~Gsg  154 (173)
                        ...+++|+ +++.+.+..+.+.+ |. .+..|..-.+
T Consensus       155 ~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a  193 (219)
T TIGR01915       155 VDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENA  193 (219)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhH
Confidence              13445555 66788899999999 85 4566654433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02712 arogenate dehydrogenase

Probab=99.57  E-value=1.1e-13  Score=118.48  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc-CCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK-DVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      .++|+|||+|.||..++++|.+.|++|.+|||+... +...+.|+....+.+++++ ++|+||+|+| +..+.+++   +
T Consensus       369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi---~  443 (667)
T PLN02712        369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL---K  443 (667)
T ss_pred             CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH---H
Confidence            479999999999999999999999999999999654 4455667776777888775 5899999999 56777777   3


Q ss_pred             chhh-cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           81 GVLK-GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        81 ~i~~-~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ++.. .++++++++|+++++....+.+.+.+. .+..|+
T Consensus       444 ~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v  481 (667)
T PLN02712        444 SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDIL  481 (667)
T ss_pred             HHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceE
Confidence            4443 578899999999987555566665553 456666

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.57  E-value=2.1e-14  Score=104.52  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=91.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|++|..+|+.+...|.+|.+|||+..........+. ...+++++++.||+|++++|.....+..+.  .+.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~--~~~  113 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLIN--AEF  113 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeee--eee
Confidence            68999999999999999999999999999999887664555555 455899999999999999997777777773  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|.++|+++.+...+.+.+.+.+++..+.
T Consensus       114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~  147 (178)
T PF02826_consen  114 LAKMKPGAVLVNVARGELVDEDALLDALESGKIA  147 (178)
T ss_dssp             HHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred             eeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence            7899999999999999888889999999875554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.56  E-value=9.6e-15  Score=100.21  Aligned_cols=95  Identities=18%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      +||+|||+|++|..+++.|.++|++|. +|+|++++.+++.+. +.....+..++++++|++|+++||+ .+.++.   +
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va---~   86 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA---E   86 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH---H
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH---H
Confidence            699999999999999999999999986 568998887777664 4445567788899999999999965 677887   4


Q ss_pred             chhhc--CCCCCEEEEcCCCCHH
Q 044797           81 GVLKG--LQKGAVIILQSTILPS  101 (173)
Q Consensus        81 ~i~~~--l~~g~~ii~~st~~~~  101 (173)
                      ++...  .++|++++.+|...+.
T Consensus        87 ~La~~~~~~~g~iVvHtSGa~~~  109 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTSGALGS  109 (127)
T ss_dssp             HHHCC--S-TT-EEEES-SS--G
T ss_pred             HHHHhccCCCCcEEEECCCCChH
Confidence            56665  7899999999876544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.56  E-value=4.2e-14  Score=100.94  Aligned_cols=91  Identities=16%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhhcCCCEEEEeccCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      ||+|+|+|++|+++|..|..+|++|++|.|+++..+.+.+.+              +..+++++++++++|+|++++| .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP-s   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP-S   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc-H
Confidence            799999999999999999999999999999999988877632              2357788899999999999999 5


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +..++++   +++.+++++++.++..+.+
T Consensus        80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG  105 (157)
T PF01210_consen   80 QAHREVL---EQLAPYLKKGQIIISATKG  105 (157)
T ss_dssp             GGHHHHH---HHHTTTSHTT-EEEETS-S
T ss_pred             HHHHHHH---HHHhhccCCCCEEEEecCC
Confidence            6778888   6788999999999988754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.55  E-value=5.4e-14  Score=111.64  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.|...|++|.+|||++.... ....+.. ..++++++++||+|++++|....++.++.  .+.
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~  226 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EER  226 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HHH
Confidence            6899999999999999999999999999999865432 2333544 34789999999999999998888888874  367


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ++.+++|+++||++++...+.+.+.+.++...+
T Consensus       227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i  259 (333)
T PRK13243        227 LKLMKPTAILVNTARGKVVDTKALVKALKEGWI  259 (333)
T ss_pred             HhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe
Confidence            788999999999999999999999999976544

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.54  E-value=9e-14  Score=110.19  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=91.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||.++|+.|...|++|.+||++++.....    .....+++++++++|+|++++|...+++..+.  .+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~  220 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAM  220 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHH
Confidence            589999999999999999999999999999998654322    23455789999999999999998877777774  467


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++|+++.+...+...|.+.|....+.
T Consensus       221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~  254 (330)
T PRK12480        221 FDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL  254 (330)
T ss_pred             HhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence            7889999999999999888889999999765443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.54  E-value=2.7e-13  Score=104.81  Aligned_cols=139  Identities=17%  Similarity=0.296  Sum_probs=103.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC--hHHHHHHHHcCCcee--cCh-hhhhcCCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS--DPLVDKFFMLGGIRS--ASP-MDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~--~~~~~~~~~~g~~~~--~~~-~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |+++|+|+|+|.||..+++.|.+.|+.+.+++++  .+..+...+.|+...  .+. .+...++|+||+||| -..+..+
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~   80 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEV   80 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHH
Confidence            4689999999999999999999999988666555  444555555565432  232 567778999999999 5667788


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec---------------eeeeeecC----HhhHHHHH
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE---------------RMFLISSS----IDCFTYLF  136 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~---------------~~~~~~g~----~~~~~~~~  136 (173)
                      +   +++.+++++|.+++|.++.+....+.+.+...+.. +++..               ..+.++..    .+..+.++
T Consensus        81 l---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~  156 (279)
T COG0287          81 L---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVK  156 (279)
T ss_pred             H---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHH
Confidence            8   57888999999999999998888888888775533 44421               13333322    34677888


Q ss_pred             HHHHhhCC
Q 044797          137 LVKNEFFI  144 (173)
Q Consensus       137 ~~~~~~g~  144 (173)
                      .+++.+|-
T Consensus       157 ~~~~~~ga  164 (279)
T COG0287         157 RLWEALGA  164 (279)
T ss_pred             HHHHHcCC
Confidence            88888884

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.53  E-value=3.6e-13  Score=106.61  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=88.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVS   60 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~d   60 (173)
                      |+++|+|||+|++|.++|..++++|++|..+|.++.+.+.+..                   .| .+.++++.+ ++.||
T Consensus         8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d   86 (436)
T COG0677           8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD   86 (436)
T ss_pred             CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence            4579999999999999999999999999999999998876532                   12 345555555 45899


Q ss_pred             EEEEeccChh------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797           61 ALVVVISHVD------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG  112 (173)
Q Consensus        61 vii~~v~~~~------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~  112 (173)
                      ++++|||.|-      ++..+....+.+.+.|++|+++|-.||..|.+++++...+.+
T Consensus        87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence            9999999652      222232222468899999999999999999999999998766

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.53  E-value=4.2e-13  Score=98.49  Aligned_cols=145  Identities=15%  Similarity=0.153  Sum_probs=98.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC-hHHHHHHHHc-CC-ceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKFFML-GG-IRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ||+++|+|.|++|++++++|.+.||+|.+-+|+ +++.+...+. +. ....++.++++.+|+||+++|. .++..++  
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~--   77 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL--   77 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH--
Confidence            578999999999999999999999999988665 4444444332 22 2345688999999999999995 5566776  


Q ss_pred             ccchhhcCCCCCEEEEcCCC---------------CHHHHHHHHHHHhcCCc-ee---e------------eceeeeeec
Q 044797           79 HEGVLKGLQKGAVIILQSTI---------------LPSHMQKLEKTFTGNLT-FY---I------------LERMFLISS  127 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~---------------~~~~~~~l~~~l~~~g~-~~---v------------~~~~~~~~g  127 (173)
                       .++...+. |+++||++.-               .-...+.+++.+....+ +-   +            ....++++|
T Consensus        78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vag  155 (211)
T COG2085          78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAG  155 (211)
T ss_pred             -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEec
Confidence             45655554 8999999763               11123444444433211 10   0            112556666


Q ss_pred             C-HhhHHHHHHHHHhhCC-ceeecCC
Q 044797          128 S-IDCFTYLFLVKNEFFI-DKKVNIS  151 (173)
Q Consensus       128 ~-~~~~~~~~~~~~~~g~-~~~~g~~  151 (173)
                      + .++.+.+..+.+.+|. ..-+|..
T Consensus       156 DD~~Ak~~v~~L~~~iG~~~ld~G~L  181 (211)
T COG2085         156 DDAEAKAVVAELAEDIGFRPLDAGPL  181 (211)
T ss_pred             CcHHHHHHHHHHHHhcCcceeecccc
Confidence            5 4588999999999985 3445543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.53  E-value=4.8e-13  Score=110.42  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHcC-------------------CceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFMLG-------------------GIRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g-------------------~~~~~~~~~~~~~~d   60 (173)
                      +|||+|||+|.+|..+|..|+++|  ++|+++|.++++++.+.+.+                   ...+++..++++++|
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad   80 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD   80 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence            468999999999999999999885  78999999999998864321                   234556677889999


Q ss_pred             EEEEeccChh--------------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797           61 ALVVVISHVD--------------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG  112 (173)
Q Consensus        61 vii~~v~~~~--------------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~  112 (173)
                      ++|+|||.|.              .++.++   +.+.++++++++|+..||..|.+.+++.+.+.+
T Consensus        81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~  143 (473)
T PLN02353         81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH  143 (473)
T ss_pred             EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence            9999997554              233333   467788999999999999999999999888775

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.52  E-value=3.8e-13  Score=104.96  Aligned_cols=136  Identities=14%  Similarity=0.192  Sum_probs=101.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------C------CceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------G------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ++||+|||.|.+|+++|+-|.++|++|++|.|+++-.+.+...        +      +..+++..++++++|+|++++|
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            4799999999999999999999999999999999988877653        1      3457788999999999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhc----CCceeeece-------------eeeeecCH
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTG----NLTFYILER-------------MFLISSSI  129 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~----~g~~~v~~~-------------~~~~~g~~  129 (173)
                       .+.++.++   +++.+.++++..+++++-+ .+.+.+.+.+.+++    ..+.++..+             ++.-+-++
T Consensus        81 -s~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~  156 (329)
T COG0240          81 -SQALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQ  156 (329)
T ss_pred             -hHHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence             57889998   4566788899999998753 44455555555544    223344332             33444455


Q ss_pred             hhHHHHHHHHHh
Q 044797          130 DCFTYLFLVKNE  141 (173)
Q Consensus       130 ~~~~~~~~~~~~  141 (173)
                      +..+.++.+|+.
T Consensus       157 ~~a~~v~~~f~~  168 (329)
T COG0240         157 EAAEKVQALFSS  168 (329)
T ss_pred             HHHHHHHHHhCC
Confidence            556666666654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.51  E-value=1.6e-12  Score=103.72  Aligned_cols=159  Identities=13%  Similarity=0.033  Sum_probs=105.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC---------------CceecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG---------------GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +|||+|||+|.||++++..|.++| +++.|.|+++..+.+.+.+               +..+++..++++++|+||+++
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav   85 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV   85 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence            479999999999999999999999 6888999999888776532               124556677888999999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHH-H----HHHHHHHHhcCCceeeece-----------e--eeeecC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPS-H----MQKLEKTFTGNLTFYILER-----------M--FLISSS  128 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~-~----~~~l~~~l~~~g~~~v~~~-----------~--~~~~g~  128 (173)
                      | +..+++++   +++.+.++++..+++.+.+-.. +    .+.+.+.+.......+..+           +  .+-+.+
T Consensus        86 p-s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~  161 (341)
T PRK12439         86 P-SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD  161 (341)
T ss_pred             C-HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence            9 67788888   5677888888888877664332 1    2334444422222222221           2  222334


Q ss_pred             HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhh
Q 044797          129 IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYF  165 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~  165 (173)
                      ++..+.+..+|+.-+...++..-=-|.-|..+..|-+
T Consensus       162 ~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~  198 (341)
T PRK12439        162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVF  198 (341)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHH
Confidence            4555667777666555556555445555555544443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.51  E-value=1.3e-13  Score=107.93  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-eecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||+...      .+.. ...++++++++||+|++++|..++++.++.  .+
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~  194 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SK  194 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HH
Confidence            68999999999999999999999999999998532      2322 245789999999999999998888888873  45


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+..+++|+++|+++++.+.+.+.+.+.+++..+
T Consensus       195 ~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i  228 (303)
T PRK06436        195 MLSLFRKGLAIINVARADVVDKNDMLNFLRNHND  228 (303)
T ss_pred             HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence            7788999999999999999999999999986544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.49  E-value=1e-12  Score=102.84  Aligned_cols=160  Identities=13%  Similarity=0.089  Sum_probs=105.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----------ecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----------SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----------~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |||+|||+|.||+.+|..|.++|++|++++|++++.+.+.+.|...           .++..+. +.+|+||+++|. .+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence            4899999999999999999999999999999988888877766422           3344444 789999999994 56


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eeee-------------ceeeeeecCH---hh
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYIL-------------ERMFLISSSI---DC  131 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v~-------------~~~~~~~g~~---~~  131 (173)
                      ++.++   +.+.+.+.+++.|+...++ ....+.+.+.+.+..+    .+..             .+.+.++..+   +.
T Consensus        79 ~~~~~---~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~  154 (304)
T PRK06522         79 LPAAL---PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA  154 (304)
T ss_pred             HHHHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence            77777   4677778788888877664 2333455555543211    1111             0123333322   22


Q ss_pred             HHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhh
Q 044797          132 FTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       132 ~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                      .+.+..+|+..|...++...=....|.++.+|..+..
T Consensus       155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~  191 (304)
T PRK06522        155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINP  191 (304)
T ss_pred             HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhH
Confidence            4456666666665555544445566777766655543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.49  E-value=2e-12  Score=102.52  Aligned_cols=92  Identities=12%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhh-cCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAG-KDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~-~~~dvii~~v~   67 (173)
                      |||+|||+|.||+.++..|.++|++|++|+|+++..+.+.+.+              +...++..+.+ .++|+||+++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            4899999999999999999999999999999998887776531              11334555665 58999999999


Q ss_pred             ChhhhhhhhcCccchhh-cCCCCCEEEEcCCC
Q 044797           68 HVDQIDDIFFGHEGVLK-GLQKGAVIILQSTI   98 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~-~l~~g~~ii~~st~   98 (173)
                       +.++++++   +++.+ .+.++..++..+.+
T Consensus        81 -s~~~~~~l---~~l~~~~l~~~~~vv~~~nG  108 (326)
T PRK14620         81 -TQQLRTIC---QQLQDCHLKKNTPILICSKG  108 (326)
T ss_pred             -HHHHHHHH---HHHHHhcCCCCCEEEEEEcC
Confidence             67788888   56776 77777766666544

>PLN02712 arogenate dehydrogenase

Probab=99.49  E-value=6.1e-13  Score=113.92  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=87.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||+|.||..+++.|.++|++|.+|||+..+ +...+.|+....+..+++ +++|+|++|+| +..+.+++   ++
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl---~~  127 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVL---KS  127 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHH---Hh
Confidence            68999999999999999999999999999998554 445566877777788755 56999999999 56788887   34


Q ss_pred             hh-hcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           82 VL-KGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        82 i~-~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +. +.++++++|+|+++.+....+.+.+.+.+ +..|+
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v  164 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDII  164 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEE
Confidence            54 56889999999999887666666666543 44443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.48  E-value=2.7e-13  Score=107.65  Aligned_cols=109  Identities=15%  Similarity=0.106  Sum_probs=88.8

Q ss_pred             CeEEEEeCChhhHHHHHHH-HHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASL-IRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l-~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|||||+|.||..+|+.| ...|++|++||+++....   ...+....+++++++++|+|++++|.....+.++ + .+
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~  221 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-AD  221 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HH
Confidence            6899999999999999999 557899999999875431   1234455689999999999999999777666554 2 34


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ..+.+++|+++|+++++...+.+.+.+.+....+.
T Consensus       222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  256 (332)
T PRK08605        222 LFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK  256 (332)
T ss_pred             HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence            67889999999999999999999999999765553

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.48  E-value=2.7e-13  Score=96.22  Aligned_cols=113  Identities=14%  Similarity=-0.025  Sum_probs=86.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CC----ceecChhhhhcCCCEEEEeccChhh-hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GG----IRSASPMDAGKDVSALVVVISHVDQ-IDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~----~~~~~~~~~~~~~dvii~~v~~~~~-~~~v   75 (173)
                      ++|+|+|+|.||..+++.|.+.| ++|+++||++++.+.+.+. +.    ....+..++++++|+|++|+|.+.+ ++..
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~   99 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL   99 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence            68999999999999999999986 7899999999988776543 32    2345667778899999999996554 3333


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .+.    ...++++++++|+++..+.+  .+.+.+++.|.+++...
T Consensus       100 ~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g~  139 (155)
T cd01065         100 PLP----PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDGL  139 (155)
T ss_pred             CCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCCH
Confidence            321    13468999999999875544  78888888888877654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.48  E-value=1.7e-13  Score=107.82  Aligned_cols=110  Identities=13%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.|...|++|.+||+++++......  .....++++++++||+|++++|..++++.++.  .+.
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~  212 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQL  212 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHH
Confidence            58999999999999999999999999999987654221111  11234788999999999999998888888884  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|+++|+++.+...+.+.|.+.|.+..+.
T Consensus       213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~  246 (312)
T PRK15469        213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK  246 (312)
T ss_pred             HhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence            7889999999999999888889999999876554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.48  E-value=2.3e-12  Score=101.03  Aligned_cols=162  Identities=13%  Similarity=0.128  Sum_probs=106.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------------ecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------------SASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~dvii~~v~~~   69 (173)
                      |||+|||+|.||..+|..|.++|++|++++| +++.+.+.+.|...             .++.++..+.+|+||+|+|. 
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence            5899999999999999999999999999999 88888777655321             23445556789999999995 


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeeece-------------eeeeecC----
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYILER-------------MFLISSS----  128 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~~~-------------~~~~~g~----  128 (173)
                      .++++++   +.+.+.+.++++|+...++- ...+.+.+.+.+.    ++.+....             .+.++..    
T Consensus        79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~  154 (305)
T PRK12921         79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR  154 (305)
T ss_pred             cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence            5677777   46777788888888776542 3344566655432    22222211             2233321    


Q ss_pred             HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          129 IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      .+..+.+..+|+..|...+.-..=....|.++.+|..+..++
T Consensus       155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~  196 (305)
T PRK12921        155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMT  196 (305)
T ss_pred             CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHH
Confidence            123345556666666544444434455688888887665543

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.46  E-value=2.4e-12  Score=101.49  Aligned_cols=134  Identities=13%  Similarity=0.006  Sum_probs=93.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||+|+||.++|++|+..|++|.++++++++. +...+.|+... +..++++++|+|++++|+.. ...++.  ++
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~-~~~V~~--~~   93 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV-QAEVYE--EE   93 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH-HHHHHH--HH
Confidence            689999999999999999999999999988875544 34444576654 78999999999999999554 477763  35


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-----------------ceeee---eecC--HhhHHHHHHHH
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-----------------ERMFL---ISSS--IDCFTYLFLVK  139 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-----------------~~~~~---~~g~--~~~~~~~~~~~  139 (173)
                      +.+.+++|++++-+......   .+...+. .++..+.                 .++..   +..+  .+..+.+..++
T Consensus        94 I~~~Lk~g~iL~~a~G~~i~---~~~~~p~-~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~  169 (330)
T PRK05479         94 IEPNLKEGAALAFAHGFNIH---FGQIVPP-ADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYA  169 (330)
T ss_pred             HHhcCCCCCEEEECCCCChh---hceeccC-CCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHH
Confidence            77889999988544433222   2222221 2332221                 11222   3333  56788899999


Q ss_pred             HhhCC
Q 044797          140 NEFFI  144 (173)
Q Consensus       140 ~~~g~  144 (173)
                      +.+|.
T Consensus       170 ~aiG~  174 (330)
T PRK05479        170 KGIGG  174 (330)
T ss_pred             HHcCC
Confidence            99985

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.46  E-value=1.1e-12  Score=102.16  Aligned_cols=139  Identities=13%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-----------HcC-------------CceecChhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-----------MLG-------------GIRSASPMDAG   56 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~   56 (173)
                      +.++|+|||.|.||+.||..++..|++|+++|++++.+++..           +.|             +....++. .+
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l   80 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL   80 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence            357999999999999999999998899999999987665421           112             11233333 68


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhc----CCceeeece--------ee
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTG----NLTFYILER--------MF  123 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~----~g~~~v~~~--------~~  123 (173)
                      ++||+||.+++.+..++.-++  .++.+..++++++-+.+ +.++.   ++.+.+..    .|.||++..        +-
T Consensus        81 ~~~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it---~ia~~~~rper~iG~HFfNP~~~m~LVEvI~  155 (307)
T COG1250          81 KDADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSIT---ELAEALKRPERFIGLHFFNPVPLMPLVEVIR  155 (307)
T ss_pred             ccCCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHH---HHHHHhCCchhEEEEeccCCCCcceeEEEec
Confidence            899999999999888877666  45777888888886554 44444   33444421    377877654        22


Q ss_pred             eeecCHhhHHHHHHHHHhhCCc
Q 044797          124 LISSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       124 ~~~g~~~~~~~~~~~~~~~g~~  145 (173)
                      ..-.++++.+.+..+...+|+.
T Consensus       156 g~~T~~e~~~~~~~~~~~igK~  177 (307)
T COG1250         156 GEKTSDETVERVVEFAKKIGKT  177 (307)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC
Confidence            3345678899999999999964

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.46  E-value=5.5e-13  Score=104.08  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||.++|++|...|++|.+|++.....+...+.|... .+++++++.+|+|++++|++.+ +.++.  +++
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~ei   92 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEV   92 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHH
Confidence            6899999999999999999999999999987755555555557765 4899999999999999997554 67774  468


Q ss_pred             hhcCCCCCEEEEc
Q 044797           83 LKGLQKGAVIILQ   95 (173)
Q Consensus        83 ~~~l~~g~~ii~~   95 (173)
                      ++.+++|++++-+
T Consensus        93 l~~MK~GaiL~f~  105 (335)
T PRK13403         93 EENLREGQMLLFS  105 (335)
T ss_pred             HhcCCCCCEEEEC
Confidence            8899999877654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.45  E-value=5.7e-13  Score=111.63  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=94.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+||+.... +...+.++...+++++++++||+|++++|..++++.++.  .+.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~  215 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEE  215 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHH
Confidence            58999999999999999999999999999986322 233445666666899999999999999998888888873  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++...+.+.|.+.|....+.
T Consensus       216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  249 (525)
T TIGR01327       216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR  249 (525)
T ss_pred             HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee
Confidence            7889999999999999999999999999876554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.44  E-value=6.2e-13  Score=104.92  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=93.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|++|+.+|+.+...|++|.+||+...+. .....+.....+++++++.||+|++.+|..+.++.++.  .+.
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~  219 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEE  219 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHH
Confidence            689999999999999999999999999999943332 12223556677899999999999999998888888884  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|.++|+++.+...+.+.|.+.+.+..+.
T Consensus       220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~  253 (324)
T COG0111         220 LAKMKPGAILINAARGGVVDEDALLAALDSGKIA  253 (324)
T ss_pred             HhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence            7889999999999999988899999999765443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.44  E-value=8.6e-13  Score=110.58  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=93.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||+... +...+.++... ++++++++||+|++++|..++++.++.  .+.
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~  216 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEE  216 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHH
Confidence            58999999999999999999999999999996432 23344566665 799999999999999998888888873  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ++.+++|.++|+++.+...+.+.+.+.++...+
T Consensus       217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  249 (526)
T PRK13581        217 LAKMKPGVRIINCARGGIIDEAALAEALKSGKV  249 (526)
T ss_pred             HhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence            788999999999999999999999999976544

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.43  E-value=7.6e-12  Score=100.21  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=74.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCChH-----HHHHHHHc--------------CCceecChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISDP-----LVDKFFML--------------GGIRSASPMDAG   56 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~~~   56 (173)
                      +||+|||.|.||+++|..|.++|       ++|.+|.|+++     ..+.+.+.              .+..+++..+++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            68999999999999999999987       79999999976     24555432              123467788899


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhh--cCCCCCEEEEcCCC
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLK--GLQKGAVIILQSTI   98 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~--~l~~g~~ii~~st~   98 (173)
                      +++|+|++++| ++.+++++   +++.+  .++++.++++++.+
T Consensus        92 ~~aDiIvlAVP-sq~l~~vl---~~l~~~~~l~~~~~iIS~aKG  131 (365)
T PTZ00345         92 EDADLLIFVIP-HQFLESVL---SQIKENNNLKKHARAISLTKG  131 (365)
T ss_pred             hcCCEEEEEcC-hHHHHHHH---HHhccccccCCCCEEEEEeCC
Confidence            99999999999 78899998   56766  67777788887653

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.42  E-value=1.6e-12  Score=102.56  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=93.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||.|++|.++|+++...|.+|..|||++. .+...+.+....+ ++++++++|+|++.+|...+.+.++.  .+.
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~  222 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEE  222 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHH
Confidence            6899999999999999999999999999999976 2332333455555 99999999999999998888888884  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ++.+++|.++|+++.+...+.+.+.+.|++..+
T Consensus       223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i  255 (324)
T COG1052         223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKI  255 (324)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence            789999999999999999999999999987544

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.42  E-value=3.2e-12  Score=100.74  Aligned_cols=136  Identities=11%  Similarity=0.004  Sum_probs=99.3

Q ss_pred             hhHHHHHHHHHCCCeEEEEcCChHH-------HHH-----------HHHcC-------------CceecC--hhhhhcCC
Q 044797           13 YSVDMAASLIRSGYKVQAFEISDPL-------VDK-----------FFMLG-------------GIRSAS--PMDAGKDV   59 (173)
Q Consensus        13 mG~~ia~~l~~~g~~V~~~d~~~~~-------~~~-----------~~~~g-------------~~~~~~--~~~~~~~~   59 (173)
                      ||..||..++.+|++|++||++++.       +++           +.+.|             ++.+.+  ..+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            8999999999999999999999842       111           11112             223333  55788999


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh----cCCceeeece--------eeeeec
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT----GNLTFYILER--------MFLISS  127 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~----~~g~~~v~~~--------~~~~~g  127 (173)
                      |+||.|+|++.++++.+++  ++.+.+++++++.+.++  +....++.+.+.    ..|.||++.+        +...++
T Consensus        81 D~ViEav~E~~~~K~~~f~--~l~~~~~~~~ilaSntS--~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t  156 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALR--WLGRHVDADAIIASTTS--TFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDAT  156 (314)
T ss_pred             CEEEECCcCCHHHHHHHHH--HHHhhCCCCcEEEEccc--cCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            9999999999999988874  58788899988854443  334566777663    3577888765        223356


Q ss_pred             CHhhHHHHHHHHHhhCC-ceeecCCC
Q 044797          128 SIDCFTYLFLVKNEFFI-DKKVNISG  152 (173)
Q Consensus       128 ~~~~~~~~~~~~~~~g~-~~~~g~~G  152 (173)
                      ++++++.++++++.+|+ +++++..+
T Consensus       157 ~~e~~~~~~~ll~~lGk~~v~v~d~~  182 (314)
T PRK08269        157 DPAVVDRLAALLERIGKVPVVCGPSP  182 (314)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence            77899999999999996 56777654

>PLN02928 oxidoreductase family protein

Probab=99.40  E-value=1.9e-12  Score=103.30  Aligned_cols=110  Identities=14%  Similarity=0.097  Sum_probs=89.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH------------HHcCCceecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF------------FMLGGIRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~------------~~~g~~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      +++||||+|.||..+|+.+...|++|.+|||+..+....            ..... ...++++++++||+|++++|...
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~  238 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK  238 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence            689999999999999999999999999999974322111            01112 34578999999999999999888


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .++.++.  .+.+..+++|+++||++.+...+.+.|.+.|....+
T Consensus       239 ~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i  281 (347)
T PLN02928        239 ETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL  281 (347)
T ss_pred             HhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence            8887774  467788999999999999988888999999976544

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.39  E-value=1.5e-11  Score=106.45  Aligned_cols=141  Identities=10%  Similarity=0.045  Sum_probs=102.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-----------HcC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-----------MLG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~   58 (173)
                      .+|+|||+|.||..||..++.+|++|+++|++++.+++..           +.|             ++.+++. +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999999998765421           111             2345555 45789


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeee
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLIS  126 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~  126 (173)
                      ||+||.++|.+..+++-++  .++.+.+++++++.+.++.-+.  .++.+.+..    .|.||+..+        +..-.
T Consensus       393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~  468 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK  468 (715)
T ss_pred             CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCCccEEEEecCCcccccceEEeeCCCC
Confidence            9999999998888887776  4677888888888765554332  244555433    256776544        22234


Q ss_pred             cCHhhHHHHHHHHHhhCCc-eee
Q 044797          127 SSIDCFTYLFLVKNEFFID-KKV  148 (173)
Q Consensus       127 g~~~~~~~~~~~~~~~g~~-~~~  148 (173)
                      .++++.+.+..++..+|+. +.+
T Consensus       469 T~~~~~~~~~~~~~~lgk~pv~v  491 (715)
T PRK11730        469 TSDETIATVVAYASKMGKTPIVV  491 (715)
T ss_pred             CCHHHHHHHHHHHHHhCCceEEe
Confidence            4678889999999999974 344

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.38  E-value=4.1e-11  Score=95.37  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCC--------CeEEEEcC-----ChHHHHHHHHc--------C------CceecChhhhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSG--------YKVQAFEI-----SDPLVDKFFML--------G------GIRSASPMDAG   56 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g--------~~V~~~d~-----~~~~~~~~~~~--------g------~~~~~~~~~~~   56 (173)
                      ||+|||.|+||+++|..|..+|        ++|.+|.|     +++-.+.+.+.        +      +..++++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            6899999999999999999999        99999998     44444444321        2      23557788999


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +++|+|++++| ++.+++++   +++.+++++++.+++++-+
T Consensus        81 ~~ADiIIlAVP-s~~i~~vl---~~l~~~l~~~~~iVs~tKG  118 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGIC---KQLKGHVKPNARAISCIKG  118 (342)
T ss_pred             hcCCEEEEECC-hHHHHHHH---HHHHhhcCCCCEEEEEeCC
Confidence            99999999999 57788888   5677888888889888653

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.38  E-value=4.7e-12  Score=100.11  Aligned_cols=109  Identities=8%  Similarity=0.046  Sum_probs=90.4

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++||||+|++|..+|+.+. ..|.+|..||+.... +.....+++. .+++++++.||+|++++|....++..+.  .+
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~  221 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AE  221 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HH
Confidence            68999999999999999997 889999999987432 1222335544 4899999999999999998888888873  35


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+..+++|.++|+++.+...+.+.|.+.|+...+
T Consensus       222 ~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i  255 (323)
T PRK15409        222 QFAKMKSSAIFINAGRGPVVDENALIAALQKGEI  255 (323)
T ss_pred             HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence            7789999999999999998889999999986544

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.37  E-value=2.6e-11  Score=104.71  Aligned_cols=148  Identities=11%  Similarity=0.052  Sum_probs=104.2

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHH-----------Hc-------------CCceecChhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFF-----------ML-------------GGIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~   57 (173)
                      ++|+|||+|.||+.||..++ .+|++|+++|++++.+++..           +.             .++.+++. +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999988 58999999999998665421           11             12344555 4678


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI  125 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~  125 (173)
                      +||+||.++|.+.+++.-++  .++.+.+++++++.+.++.-+.  .++.+.+..    .|.||+..+        +..-
T Consensus       384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~  459 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHA  459 (699)
T ss_pred             cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence            99999999998888877666  4677888888888765544332  244454432    256776554        2223


Q ss_pred             ecCHhhHHHHHHHHHhhCCc-eeecCCCchHhHh
Q 044797          126 SSSIDCFTYLFLVKNEFFID-KKVNISGQEIHWG  158 (173)
Q Consensus       126 ~g~~~~~~~~~~~~~~~g~~-~~~g~~Gsg~a~~  158 (173)
                      ..++++.+.+..++..+|+. +.+.   ..|.|+
T Consensus       460 ~T~~~~~~~~~~~~~~~gk~pv~v~---d~pGfi  490 (699)
T TIGR02440       460 GTSEQTIATTVALAKKQGKTPIVVA---DKAGFY  490 (699)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEc---cccchH
Confidence            45678899999999999974 4443   345543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.37  E-value=3.4e-12  Score=102.66  Aligned_cols=105  Identities=17%  Similarity=0.121  Sum_probs=85.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChh----hhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVD----QIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~----~~~~v~~~   78 (173)
                      ++|||||+|+||+.+++.+...|++|.+||+.....     .+.....++++++++||+|++++|...    .+...+. 
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~-  190 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD-  190 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC-
Confidence            589999999999999999999999999999864321     122234578999999999999999654    3555552 


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL  114 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g  114 (173)
                       .+.+..+++|+++|+++.+...+.+.+.+.+....
T Consensus       191 -~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~  225 (381)
T PRK00257        191 -EAFLASLRPGAWLINASRGAVVDNQALREALLSGE  225 (381)
T ss_pred             -HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCC
Confidence             35778899999999999999999999999987643

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.36  E-value=4.7e-12  Score=103.06  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|++|..+|+.+...|.+|.+||+++...    ..++....+++++++.||+|++++|....++..+.  .+.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~  225 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEE  225 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHH
Confidence            589999999999999999999999999999874321    12344556899999999999999998888888773  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|..+|+++.+...+.+.|.+.|....+.
T Consensus       226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  259 (409)
T PRK11790        226 LALMKPGAILINASRGTVVDIDALADALKSGHLA  259 (409)
T ss_pred             HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence            7889999999999999999999999999875553

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.36  E-value=2.8e-11  Score=104.65  Aligned_cols=141  Identities=11%  Similarity=0.060  Sum_probs=102.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c-------------CCceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L-------------GGIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   58 (173)
                      ++|+|||+|.||..||..++.+|++|+++|++++.+++..+           .             .++.+.+. +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            58999999999999999999999999999999987754211           1             12344455 45789


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeee
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLIS  126 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~  126 (173)
                      ||+||.+++.+..+++-++  .++.+.+++++++.+.++.-+.  .++++.+..    .|.||+...        +..-.
T Consensus       393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~  468 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK  468 (714)
T ss_pred             CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCcccEEEEecCCCcccCceEeecCCCC
Confidence            9999999998888877776  4677888899888765544332  344554433    366776554        22234


Q ss_pred             cCHhhHHHHHHHHHhhCCc-eee
Q 044797          127 SSIDCFTYLFLVKNEFFID-KKV  148 (173)
Q Consensus       127 g~~~~~~~~~~~~~~~g~~-~~~  148 (173)
                      .++++.+.+..+...+|+. +.+
T Consensus       469 Ts~~~~~~~~~~~~~lgk~pv~v  491 (714)
T TIGR02437       469 SSDETIATVVAYASKMGKTPIVV  491 (714)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEe
Confidence            5678899999999999974 344

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.36  E-value=7.4e-11  Score=93.80  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------C-CceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------G-GIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~dvi   62 (173)
                      |||.|+|.|++|...+.+|++.||+|+..|.++++++.+...                   | ...+++.+++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            699999999999999999999999999999999999875431                   1 45678889999999999


Q ss_pred             EEeccChhh------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC
Q 044797           63 VVVISHVDQ------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL  114 (173)
Q Consensus        63 i~~v~~~~~------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g  114 (173)
                      |+|||.|..      ++.+....+++.++++..++++.-||+.|.+.+++.+.+.+..
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            999986642      2222211156778888779999999999999999999887643

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.36  E-value=1e-11  Score=96.09  Aligned_cols=109  Identities=16%  Similarity=0.028  Sum_probs=84.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEE-EEcCChHHHHHHHHc-CC-ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQ-AFEISDPLVDKFFML-GG-IRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +||||||+|.||..+++.|.+.  ++++. +|||++++.+.+.+. +. ....+.+++++++|+|++|+|++.+ .++. 
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~-   84 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV-   84 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH-
Confidence            6899999999999999999863  67775 899999988776554 53 4567899999999999999996544 4443 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                           .+.++.|+.++..+.......+++.+..+++|.++.
T Consensus        85 -----~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~  120 (271)
T PRK13302         85 -----EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII  120 (271)
T ss_pred             -----HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence                 234567887777666656667888888888888753

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.36  E-value=5.2e-12  Score=99.46  Aligned_cols=107  Identities=18%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|++|+.+|+.+...|.+|.+|||+....    ..+.. ..+++++++.||+|++++|..+.++..+.  .+.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~  218 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKE  218 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHH
Confidence            589999999999999999999999999999974321    12333 34799999999999999998888888874  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus       219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~  252 (311)
T PRK08410        219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY  252 (311)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence            7889999999999999988889999999765443

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.35  E-value=1.6e-11  Score=106.44  Aligned_cols=137  Identities=9%  Similarity=-0.015  Sum_probs=101.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c-------------CCceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L-------------GGIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   58 (173)
                      .+|+|||+|.||..||..++.+|++|+++|++++.+++..+           .             .++.+.+. +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            58999999999999999999999999999999987654211           1             12344555 45789


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTG----NLTFYILER--------MFLI  125 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~  125 (173)
                      ||+||.+++.+.+++.-++  .++.+.+++++++.+.++ .++.   ++++.+..    .|.||+...        +..-
T Consensus       415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~---~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~  489 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPIK---DIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD  489 (737)
T ss_pred             CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence            9999999998888887776  467788889988875544 4433   44554433    366776654        2223


Q ss_pred             ecCHhhHHHHHHHHHhhCCc
Q 044797          126 SSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       126 ~g~~~~~~~~~~~~~~~g~~  145 (173)
                      ..++++.+.+..+...+|+.
T Consensus       490 ~Ts~~~~~~~~~~~~~lgk~  509 (737)
T TIGR02441       490 GTSKDTLASAVAVGLKQGKV  509 (737)
T ss_pred             CCCHHHHHHHHHHHHHCCCe
Confidence            45678889999999999974

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.34  E-value=5.6e-11  Score=95.29  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=89.6

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHH-CCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIR-SGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      .++|+|||+ |.||..+++.|.+ .+++|+++|++.+           ...++.+.++++|+||+|+| ...+.+++   
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavP-v~~~~~~l---   68 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAP-IRHTAALI---   68 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCC-HHHHHHHH---
Confidence            379999999 9999999999996 4889999998521           13356778899999999999 56677777   


Q ss_pred             cchhhc---CCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec--------------eeeeeec--CHhhHHHHHHHHH
Q 044797           80 EGVLKG---LQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE--------------RMFLISS--SIDCFTYLFLVKN  140 (173)
Q Consensus        80 ~~i~~~---l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~--------------~~~~~~g--~~~~~~~~~~~~~  140 (173)
                      +++.+.   ++++++|+|.++++....+.+.+    .+..|+..              ..+.+..  ..+..+.++.+++
T Consensus        69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~~----~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~  144 (370)
T PRK08818         69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAMLA----SQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS  144 (370)
T ss_pred             HHHhhhhcCCCCCeEEEECCCCcHHHHHHHHh----cCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence            455554   79999999999988665554432    23344431              1333332  2233567788999


Q ss_pred             hhCCc
Q 044797          141 EFFID  145 (173)
Q Consensus       141 ~~g~~  145 (173)
                      .+|..
T Consensus       145 ~~Ga~  149 (370)
T PRK08818        145 ALQAE  149 (370)
T ss_pred             HcCCE
Confidence            88853

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.34  E-value=2e-11  Score=94.20  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=81.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC--CCe-EEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS--GYK-VQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      |+||+|||+|.||..+++.+.+.  +++ +.++|+++++.+.+.+. +.....+.++++.++|+|++|+|+ ....+.. 
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~-   78 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV-   78 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH-
Confidence            46999999999999999999876  455 46899999988877653 666778888888899999999984 4445544 


Q ss_pred             CccchhhcCCCCCEEEEcCC---CCHHHHHHHHHHHhcCCcee
Q 044797           78 GHEGVLKGLQKGAVIILQST---ILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st---~~~~~~~~l~~~l~~~g~~~  117 (173)
                           .+.++.|+.++..+.   .++...+++.+..+++|.+.
T Consensus        79 -----~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l  116 (265)
T PRK13304         79 -----PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI  116 (265)
T ss_pred             -----HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence                 123455666665554   25566778888888887654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.33  E-value=6.2e-11  Score=102.60  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=102.0

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHH-----------HcC-------------CceecChhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFF-----------MLG-------------GIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~   57 (173)
                      +||+|||+|.||..||..++ .+|++|+++|++++.+++..           +.|             ++.+++. +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999998 88999999999988665421           111             2344555 5678


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI  125 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~  125 (173)
                      +||+||.++|.+..+++-++  .++.+.++|++++.+.++.-+.  .++++.+..    .|.||+..+        +..-
T Consensus       389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~  464 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHA  464 (708)
T ss_pred             cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCcccceEEEecCCccccCceEEEECCC
Confidence            99999999998888877776  4677889999888766554332  244444432    356766543        2233


Q ss_pred             ecCHhhHHHHHHHHHhhCCc-eee
Q 044797          126 SSSIDCFTYLFLVKNEFFID-KKV  148 (173)
Q Consensus       126 ~g~~~~~~~~~~~~~~~g~~-~~~  148 (173)
                      ..++++.+.+..++..+|+. +.+
T Consensus       465 ~Ts~~~~~~~~~~~~~~gk~pv~v  488 (708)
T PRK11154        465 KTSAETIATTVALAKKQGKTPIVV  488 (708)
T ss_pred             CCCHHHHHHHHHHHHHcCCceEEE
Confidence            45678889999999999974 344

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.31  E-value=1.4e-11  Score=87.03  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||.|..|.+.|++|+.+|.+|++..|..+ ..++..+.|.++. +..|+++.+|+|++.+|| ..-.+++.  ++
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy~--~~   80 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVYE--EE   80 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHHH--HH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHHH--HH
Confidence            6899999999999999999999999999988866 6677777887764 689999999999999995 45567764  56


Q ss_pred             hhhcCCCCCEEEEcC
Q 044797           82 VLKGLQKGAVIILQS   96 (173)
Q Consensus        82 i~~~l~~g~~ii~~s   96 (173)
                      +.+.|++|++++-..
T Consensus        81 I~p~l~~G~~L~fah   95 (165)
T PF07991_consen   81 IAPNLKPGATLVFAH   95 (165)
T ss_dssp             HHHHS-TT-EEEESS
T ss_pred             HHhhCCCCCEEEeCC
Confidence            889999999888654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.30  E-value=1.5e-11  Score=98.72  Aligned_cols=105  Identities=15%  Similarity=0.070  Sum_probs=83.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh----hhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ----IDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~----~~~v~~~   78 (173)
                      ++|||||+|+||+.+|+.+...|++|.+||+.....    ... ....++++++++||+|++++|-...    ....+. 
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~-  190 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD-  190 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC-
Confidence            689999999999999999999999999999753211    111 1245799999999999999995442    444542 


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL  114 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g  114 (173)
                       .+.+..+++|+++||++.+...+.+.|.+.++...
T Consensus       191 -~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~  225 (378)
T PRK15438        191 -EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQ  225 (378)
T ss_pred             -HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCC
Confidence             35678899999999999999888899999997643

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.29  E-value=2.1e-11  Score=96.34  Aligned_cols=105  Identities=14%  Similarity=0.052  Sum_probs=88.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|++|..+|+.+...|.+|.+||+.... .     ... ..+++++++.||+|++++|..+.++..+.  .+.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~  219 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--ARE  219 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHH
Confidence            58999999999999999999999999999986421 1     112 24789999999999999998888888874  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus       220 ~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~  253 (317)
T PRK06487        220 LALMKPGALLINTARGGLVDEQALADALRSGHLG  253 (317)
T ss_pred             HhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence            7899999999999999888889999999865543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.29  E-value=6.1e-11  Score=92.38  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=81.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++++|+|+|.+|..+++.|...|.+|+++||++++.+.+.+.+....  .+..+.++++|+||.++|..- +.      .
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~i-i~------~  224 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALV-LT------A  224 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHH-hC------H
Confidence            58999999999999999999999999999999988777666665433  345677889999999998531 11      2


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +..+.++++.+++|+++.. ..+. + +..++.|++.+.
T Consensus       225 ~~l~~~k~~aliIDlas~P-g~td-f-~~Ak~~G~~a~~  260 (287)
T TIGR02853       225 DVLSKLPKHAVIIDLASKP-GGTD-F-EYAKKRGIKALL  260 (287)
T ss_pred             HHHhcCCCCeEEEEeCcCC-CCCC-H-HHHHHCCCEEEE
Confidence            3456788999999998853 3332 2 455667876653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.28  E-value=2.3e-11  Score=95.90  Aligned_cols=106  Identities=13%  Similarity=0.047  Sum_probs=88.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|.+|..+|+.+...|.+|..||+.....  .   .. ...+++++++.||+|++++|..+.++..+.  .+.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~  219 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV--C---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AET  219 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc--c---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHH
Confidence            689999999999999999999999999999864311  1   11 134789999999999999998888888774  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus       220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~  253 (314)
T PRK06932        220 LALMKPTAFLINTGRGPLVDEQALLDALENGKIA  253 (314)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence            7889999999999999888889999999865553

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=99.27  E-value=1.3e-10  Score=86.12  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=90.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhh-cCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. +....++ .++. .++|+++.|.......++.+    
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~----  103 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI----  103 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH----
Confidence            689999999999999999999999999999999988877665 6665544 4444 47999997766432222222    


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee-----------eeecCH-hhHHHHHHHHHhhCC
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF-----------LISSSI-DCFTYLFLVKNEFFI  144 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~-----------~~~g~~-~~~~~~~~~~~~~g~  144 (173)
                         +.++ .++|+...+. |-+..+..+.|+++|+.|+.+...           +.++.+ ++.++++++++.+..
T Consensus       104 ---~~l~-~~~v~~~AN~-~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~~~~~~~~  174 (200)
T cd01075         104 ---PQLK-AKAIAGAANN-QLADPRHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEARVLAKVEAIYDTLLE  174 (200)
T ss_pred             ---HHcC-CCEEEECCcC-ccCCHhHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHHHHHHHHHHHHHHHHH
Confidence               3343 4567766553 333256778889999999875311           123332 566677777666543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02306 hydroxypyruvate reductase

Probab=99.27  E-value=4.2e-11  Score=96.66  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=88.6

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHH-HHHH-HHcC------------CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPL-VDKF-FMLG------------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~-~~~~-~~~g------------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ++|||||+|++|+.+|+.+. ..|.+|.+||+++.. .+.. ...+            .....+++++++.||+|++++|
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P  245 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV  245 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence            68999999999999999985 889999999998642 1111 1111            1223579999999999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ....++..+.  .+.++.+++|+++|+++.+...+.+.|.+.|+...+
T Consensus       246 lt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i  291 (386)
T PLN02306        246 LDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM  291 (386)
T ss_pred             CChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence            8778888874  457789999999999999988888999999976544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.25  E-value=1.8e-10  Score=90.66  Aligned_cols=165  Identities=14%  Similarity=0.094  Sum_probs=107.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceec-----------ChhhhhcCCCEEEEeccC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSA-----------SPMDAGKDVSALVVVISH   68 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~-----------~~~~~~~~~dvii~~v~~   68 (173)
                      |.|||+|+|+|.||+-++..|.+.|++|++++|+.++++.+.+. |....+           ...+.....|+||+|++.
T Consensus         1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~   80 (305)
T PRK05708          1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA   80 (305)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH
Confidence            57899999999999999999999999999999998888887754 332210           111223468999999994


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC----ceeee-----c--------eeeeeecC-Hh
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL----TFYIL-----E--------RMFLISSS-ID  130 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g----~~~v~-----~--------~~~~~~g~-~~  130 (173)
                       .++.+++   +.+.+.+.++..++..-++- ...+.+.+.+.+..    +.++.     .        +.+.+|.. .+
T Consensus        81 -~~~~~al---~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~  155 (305)
T PRK05708         81 -YDAEPAV---ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP  155 (305)
T ss_pred             -HhHHHHH---HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence             5677777   46778888888888776543 23345556654321    11111     0        12233321 23


Q ss_pred             hHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          131 CFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       131 ~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      ..+.+..+|+..|....+-..=....|.++.+|..+..++
T Consensus       156 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~lt  195 (305)
T PRK05708        156 TAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLT  195 (305)
T ss_pred             chHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhH
Confidence            3455666776666555544444667788888887665543

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.25  E-value=6.2e-11  Score=93.11  Aligned_cols=108  Identities=12%  Similarity=0.124  Sum_probs=92.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||+|+|++|+.+|++|...|..+.-+.|++.+.+...+.+.. ..+..+.+.++|+|++|.|....+..++.  .+.
T Consensus       163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~  239 (336)
T KOG0069|consen  163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKF  239 (336)
T ss_pred             CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHH
Confidence            689999999999999999999996677778877776666655555 44688999999999999999999999984  468


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGN  113 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~  113 (173)
                      ..++++|.++++++.+...+-+.+.+.++..
T Consensus       240 ~~~mk~g~vlVN~aRG~iide~~l~eaL~sG  270 (336)
T KOG0069|consen  240 IEKMKDGAVLVNTARGAIIDEEALVEALKSG  270 (336)
T ss_pred             HHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence            8999999999999999988889999998753

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.23  E-value=3.6e-10  Score=89.16  Aligned_cols=161  Identities=13%  Similarity=0.053  Sum_probs=101.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-------------cChhhhhcCCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-------------ASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~dvii~~v~~   68 (173)
                      .|||+|||+|.||+.+|..|.++|++|+++.|++.  +.+.+.|....             .+..+....+|+||+|+|.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~   82 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT   82 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence            47999999999999999999999999999999863  44544443211             1122345678999999995


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeeec-------------eeeeee---cC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYILE-------------RMFLIS---SS  128 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~~-------------~~~~~~---g~  128 (173)
                      . ++.+++   +.+.+.+.++..++...++- ...+.+.+.+.+.    ++.++..             +.+.++   ++
T Consensus        83 ~-~~~~~~---~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~  157 (313)
T PRK06249         83 T-ANALLA---PLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGP  157 (313)
T ss_pred             C-ChHhHH---HHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCC
Confidence            4 556666   45666777788777775542 3445666666432    2222111             112222   11


Q ss_pred             ------HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhh
Q 044797          129 ------IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       129 ------~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                            .+..+.+..+|+..|....+-..=....|.++.+|..+..+
T Consensus       158 ~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~l  204 (313)
T PRK06249        158 AADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGL  204 (313)
T ss_pred             cccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHH
Confidence                  23344566677777766555555566677777777655443

>PRK06141 ornithine cyclodeaminase; Validated

Probab=99.19  E-value=9.1e-11  Score=92.63  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=80.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      .+|+|||+|.||..+++.+.. .+ .+|++|||++++.+.+.+.    +  +..+.+.+++++++|+|+.+++.+   +.
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~p  202 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EP  202 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CC
Confidence            589999999999999986654 34 7899999999998887654    4  556678888999999999888854   34


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ++.     .+.+++|++|..++ ..+...+++...+.+++..|++..
T Consensus       203 vl~-----~~~l~~g~~i~~ig-~~~~~~~El~~~~~~~a~~~vD~~  243 (314)
T PRK06141        203 LVR-----GEWLKPGTHLDLVG-NFTPDMRECDDEAIRRASVYVDTR  243 (314)
T ss_pred             Eec-----HHHcCCCCEEEeeC-CCCcccccCCHHHHhcCcEEEcCH
Confidence            441     24678898555444 444455666666655666677653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.16  E-value=7.1e-10  Score=75.23  Aligned_cols=109  Identities=15%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHH-cCCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFM-LGGIRSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      +||++||+|.+|......+.+.  +.++ .++|+++++.+.+.+ .++...++.+++++  +.|+|++++|+..+.+.+.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~   80 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK   80 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence            4899999999999999998876  3565 589999999888654 48888899999987  7999999999766654443


Q ss_pred             cCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceee
Q 044797           77 FGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v  118 (173)
                             ..+..|..++..-  +.++.+.+++.+..+++|..+.
T Consensus        81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~  117 (120)
T PF01408_consen   81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM  117 (120)
T ss_dssp             -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred             -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence                   3445566665542  3477888999998888777643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.15  E-value=1.4e-09  Score=83.67  Aligned_cols=124  Identities=15%  Similarity=0.288  Sum_probs=89.0

Q ss_pred             HHHHHHHCC--CeEEEEcCChHHHHHHHHcCCcee-cChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE
Q 044797           17 MAASLIRSG--YKVQAFEISDPLVDKFFMLGGIRS-ASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII   93 (173)
Q Consensus        17 ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii   93 (173)
                      +|+.|.++|  ++|++||++++..+...+.|+... .+..+.++++|+||+|+| ...+.+++   +++.+.++++++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l---~~~~~~~~~~~iv~   76 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVL---EEIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHH---HHHHCGS-TTSEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHH---HHhhhhcCCCcEEE
Confidence            578899999  789999999999988878876432 222678899999999999 66788888   57888899999999


Q ss_pred             EcCCCCHHHHHHHHHHHhcCCceeeec---------------------eeeeeec----CHhhHHHHHHHHHhhCCc
Q 044797           94 LQSTILPSHMQKLEKTFTGNLTFYILE---------------------RMFLISS----SIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        94 ~~st~~~~~~~~l~~~l~~~g~~~v~~---------------------~~~~~~g----~~~~~~~~~~~~~~~g~~  145 (173)
                      |.++++....+.+.+.+. .+.+|+..                     ..+.+..    +++..+.++.++..+|..
T Consensus        77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~  152 (258)
T PF02153_consen   77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGAR  152 (258)
T ss_dssp             E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-E
T ss_pred             EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCE
Confidence            999999888888888776 56666531                     1333332    235678899999999953

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.14  E-value=2.1e-09  Score=84.50  Aligned_cols=162  Identities=16%  Similarity=0.133  Sum_probs=108.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce------------ecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR------------SASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~------------~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      |||.|+|+|.||+-++..|.++|++|+.+.|++. .+++.+.|...            .....+....+|+||++++. .
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence            6999999999999999999999988998888876 77777765432            11223445689999999994 5


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eeeec-------------eeeee----ecCH
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYILE-------------RMFLI----SSSI  129 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v~~-------------~~~~~----~g~~  129 (173)
                      ++++++   +.+.+.+.+.+.|+..-++- ...+.+.+......+    .....             +.+.+    ++.+
T Consensus        79 q~~~al---~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          79 QLEEAL---PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             cHHHHH---HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            678888   57888899998887765543 234466666654411    11110             11111    1122


Q ss_pred             hhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          130 DCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       130 ~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +..+.+...|+..+...++-..=....|.+++.|.-|..++
T Consensus       155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inplt  195 (307)
T COG1893         155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLT  195 (307)
T ss_pred             HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhh
Confidence            44556666677777766666555666777777777766543

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.13  E-value=2.1e-10  Score=84.89  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c------------------CCceecChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L------------------GGIRSASPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~~~~~   53 (173)
                      +.|+|+|.|.||+.||+-.+..|++|+++|++++.+.+..+           .                  .++.+++..
T Consensus        12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~   91 (298)
T KOG2304|consen   12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVS   91 (298)
T ss_pred             cceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHH
Confidence            57999999999999999999999999999999987755322           0                  012456777


Q ss_pred             hhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhc----CCceeeece-------
Q 044797           54 DAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTG----NLTFYILER-------  121 (173)
Q Consensus        54 ~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~----~g~~~v~~~-------  121 (173)
                      +++.++|+||.++-.+.+++.-++  .++....++..++... |+...   .++...+++    .|.||++..       
T Consensus        92 ~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~tNTSSl~l---t~ia~~~~~~srf~GlHFfNPvPvMKLvE  166 (298)
T KOG2304|consen   92 DAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILATNTSSLSL---TDIASATQRPSRFAGLHFFNPVPVMKLVE  166 (298)
T ss_pred             HhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEeecccceeH---HHHHhhccChhhhceeeccCCchhHHHhh
Confidence            888899999999887777776665  3466666676666543 33322   233333332    478888764       


Q ss_pred             -eeeeecCHhhHHHHHHHHHhhCCc
Q 044797          122 -MFLISSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       122 -~~~~~g~~~~~~~~~~~~~~~g~~  145 (173)
                       +----.+++.+.....+-+.+|+.
T Consensus       167 Vir~~~TS~eTf~~l~~f~k~~gKt  191 (298)
T KOG2304|consen  167 VIRTDDTSDETFNALVDFGKAVGKT  191 (298)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence             111234567777777777888863

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.09  E-value=7.8e-09  Score=77.90  Aligned_cols=144  Identities=16%  Similarity=0.098  Sum_probs=109.7

Q ss_pred             CCeEEEEeCChh--------------------hHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceecChhhhh
Q 044797            2 ASKVGFVGLDEY--------------------SVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSASPMDAG   56 (173)
Q Consensus         2 ~~~IgiiG~G~m--------------------G~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~   56 (173)
                      +|||.+.|+|+-                    |+.||..++.+||+|...|+|.+     ..++..+.|++.+++..+++
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa   80 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA   80 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence            478999999974                    78899999999999999988643     45666777999999999999


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHH-HHHHHHHhcC----Cceeee---------cee
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHM-QKLEKTFTGN----LTFYIL---------ERM  122 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~-~~l~~~l~~~----g~~~v~---------~~~  122 (173)
                      +++.+.++-+|-..++-.+.   .+|.++++.|++|.+++|++|... ..|+..|+..    |+.-..         .+-
T Consensus        81 ~~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~  157 (340)
T COG4007          81 EHGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGH  157 (340)
T ss_pred             hcceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCce
Confidence            99999999999876777777   578999999999999999988764 4555555422    332110         012


Q ss_pred             eeee---------cCHhhHHHHHHHHHhhCCceee
Q 044797          123 FLIS---------SSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       123 ~~~~---------g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                      ..++         ..++..+++..+.++.|+..|+
T Consensus       158 yviagr~t~g~elATeEQi~r~velaes~Gk~~yv  192 (340)
T COG4007         158 YVIAGRSTEGKELATEEQIERCVELAESTGKEVYV  192 (340)
T ss_pred             EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEe
Confidence            2222         2245678889999999998876

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.07  E-value=5.9e-10  Score=86.72  Aligned_cols=73  Identities=19%  Similarity=0.213  Sum_probs=62.8

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||.| .||.+|+.+|.++|++|++|+++..              ++++++++||+||++++.+..++..+     
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~-----  220 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW-----  220 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh-----
Confidence            689999996 9999999999999999999987642              67888999999999999876555443     


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                          +++|+++||++..
T Consensus       221 ----ik~GaiVIDvgin  233 (301)
T PRK14194        221 ----LKPGAVVIDVGIN  233 (301)
T ss_pred             ----ccCCcEEEEeccc
Confidence                7899999999864

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.07  E-value=1.6e-09  Score=84.81  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=80.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      +|++|+|.|.+|..+++.|...|.+|+++||++++.+...+.|....  .+..+.++++|+||.++|... +.      +
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~-i~------~  225 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALV-LT------K  225 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhh-hh------H
Confidence            68999999999999999999999999999999988777777776543  345677889999999998432 11      2


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +..+.++++.+++|.++.... +. + +..+++|++.+.
T Consensus       226 ~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~  261 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALL  261 (296)
T ss_pred             HHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEE
Confidence            344678899999999875433 22 2 344557776653

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.00  E-value=2e-09  Score=83.35  Aligned_cols=115  Identities=15%  Similarity=0.030  Sum_probs=82.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCceecChhh-hhcCCCEEEEeccChh--hhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGIRSASPMD-AGKDVSALVVVISHVD--QIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~-~~~~~dvii~~v~~~~--~~~~v   75 (173)
                      +++.|+|+|.+|.+++..|...|++|+++||++++.+.+.+.    +.....+..+ ...++|+||.|+|...  ..+..
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~  197 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEP  197 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCC
Confidence            578999999999999999999999999999999888776543    2222223333 2357999999999531  22211


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                      ..    ....++++.+++|++...+.+  .+.+..+++|.++++.--+
T Consensus       198 ~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG~~M  239 (270)
T TIGR00507       198 PV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDGLGM  239 (270)
T ss_pred             CC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCCHHH
Confidence            11    124578899999998876655  5778888889988776533

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.98  E-value=3e-09  Score=75.11  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             EEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecC--------------hhhhhcCCCEEEEeccChh
Q 044797            5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSAS--------------PMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~dvii~~v~~~~   70 (173)
                      |.|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.|......              ..+..+..|+||+|++ ..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK-a~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK-AY   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS-GG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec-cc
Confidence            7899999999999999999999999999999 878777766432211              1235678999999999 45


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT  111 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~  111 (173)
                      ++++++   +.+.+.+.+++.|+...++- ...+.+.+.+.
T Consensus        79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~-g~~~~l~~~~~  115 (151)
T PF02558_consen   79 QLEQAL---QSLKPYLDPNTTIVSLQNGM-GNEEVLAEYFP  115 (151)
T ss_dssp             GHHHHH---HHHCTGEETTEEEEEESSSS-SHHHHHHCHST
T ss_pred             chHHHH---HHHhhccCCCcEEEEEeCCC-CcHHHHHHHcC
Confidence            677787   46778888887777776542 33456666653

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.98  E-value=3.7e-09  Score=83.87  Aligned_cols=91  Identities=16%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHH--CCCeEEEEcCChHHHHHHHH----cC--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR--SGYKVQAFEISDPLVDKFFM----LG--GIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      .+++|||+|.+|...++.+..  ...+|.+|||++++.+.+.+    .+  +..+.+.+++++++|+|++|+|...   .
T Consensus       129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P  205 (325)
T TIGR02371       129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---P  205 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---c
Confidence            579999999999998887754  33689999999999877654    25  4567889999999999999998532   3


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~  101 (173)
                      ++.     .+.+++|.+|..+++..|.
T Consensus       206 ~~~-----~~~l~~g~~v~~vGs~~p~  227 (325)
T TIGR02371       206 VVK-----ADWVSEGTHINAIGADAPG  227 (325)
T ss_pred             Eec-----HHHcCCCCEEEecCCCCcc
Confidence            331     2457999999999887764

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.97  E-value=1.2e-08  Score=77.96  Aligned_cols=108  Identities=16%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC---CeE-EEEcCChHHHHHHHHcCCceecChhhh-hcCCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG---YKV-QAFEISDPLVDKFFMLGGIRSASPMDA-GKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~v   75 (173)
                      |++|||+||||.||..+++.|.+.+   +++ .+++|++++.+.+.+. +..+.+++++ ...+|+|+.|-. ++.+++.
T Consensus         1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~   78 (267)
T PRK13301          1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEH   78 (267)
T ss_pred             CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHH
Confidence            8899999999999999999987643   444 5788998888877654 6788889996 578999999998 6677766


Q ss_pred             hcCccchhhcCCCCCEEEEcC--C-CCHHHHHHHHHHHhcCCce
Q 044797           76 FFGHEGVLKGLQKGAVIILQS--T-ILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s--t-~~~~~~~~l~~~l~~~g~~  116 (173)
                      .   .   +.|..|.-++-.|  . .++...+++.+..++.|.+
T Consensus        79 ~---~---~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~  116 (267)
T PRK13301         79 A---E---GCLTAGLDMIICSAGALADDALRARLIAAAEAGGAR  116 (267)
T ss_pred             H---H---HHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE
Confidence            5   2   3345454444333  3 2444567777777665544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.96  E-value=8.8e-09  Score=79.18  Aligned_cols=132  Identities=11%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++||+|+|+ |+||..+++.+.+. ++++. ++|+++++.......++...++++++++++|+|+.++| |....+.+  
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~--   77 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENL--   77 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHH--
Confidence            469999998 99999999988764 57764 68988876544433356667788888888999998887 44444443  


Q ss_pred             ccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhhC
Q 044797           79 HEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~g  143 (173)
                          ...++.|..++..++ .+++..+++.+ .. +++..+-.+.+-++-.. ..+.++.....++
T Consensus        78 ----~~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~s~g~~~-~~~l~~~aa~~l~  136 (257)
T PRK00048         78 ----EFALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNFSIGVNL-LMKLAEKAAKYLG  136 (257)
T ss_pred             ----HHHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcchHHHHH-HHHHHHHHHHhcC
Confidence                234556666665444 46666677776 32 44443333333222221 2334444445555

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.95  E-value=1.3e-08  Score=81.79  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=86.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcC---Cc-------eecChhhhhcCCCEEEEeccChh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLG---GI-------RSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g---~~-------~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      |++|.+||+|.+|+.+|..|+++| .+|++.||+.++..++.+..   ++       -.+...+++++.|+||.|.|...
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            578999999999999999999999 89999999999998886652   22       12234577888999999999544


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      . ..++      ...++.|..++|+|...+.. ..+.+...+.|+..+.+
T Consensus        81 ~-~~i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~  122 (389)
T COG1748          81 D-LTIL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLG  122 (389)
T ss_pred             h-HHHH------HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcc
Confidence            3 3444      24567899999999876665 77888888888876544

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.94  E-value=1.6e-08  Score=81.99  Aligned_cols=101  Identities=16%  Similarity=0.078  Sum_probs=78.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|+|+|+|.+|..+++.+...|.+|+++|+++.+.......|.... +.+++++.+|++|.++..+..+..      +.
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~------~~  268 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG------EH  268 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH------HH
Confidence            58999999999999999999999999999999987766666676543 567888999999998874433322      24


Q ss_pred             hhcCCCCCEEEEcCCCCH-HHHHHHHHHH
Q 044797           83 LKGLQKGAVIILQSTILP-SHMQKLEKTF  110 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~-~~~~~l~~~l  110 (173)
                      ...+++|.++++.+.... .+...+.+.+
T Consensus       269 ~~~mK~GailiN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       269 FENMKDGAIVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             HhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence            467899999999988654 4456666654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.93  E-value=5e-09  Score=81.65  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEc-CChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFE-ISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d-~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++|+||| .|.||.+||.+|.+.|++|++|+ |++               +++++++.+|+|++|++.+..++..+    
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~----  219 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW----  219 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe----
Confidence            6899999 99999999999999999999995 654               35788889999999999876554432    


Q ss_pred             chhhcCCCCCEEEEcCCC
Q 044797           81 GVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~   98 (173)
                           +++|++++|++..
T Consensus       220 -----lk~GavVIDvGin  232 (296)
T PRK14188        220 -----IKPGATVIDVGIN  232 (296)
T ss_pred             -----ecCCCEEEEcCCc
Confidence                 7899999999864

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.91  E-value=1.3e-08  Score=72.33  Aligned_cols=92  Identities=18%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++.|+|.|..|..+|+.|+..|..|++++++|-+.-+....|.++. +.+++++.+|++|.++.....+.      .+.
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~------~e~   96 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT------GEH   96 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-------HHH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC------HHH
Confidence            57899999999999999999999999999999987766666687765 68899999999999987433221      134


Q ss_pred             hhcCCCCCEEEEcCCCCHH
Q 044797           83 LKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~  101 (173)
                      ++.+++|.++.+.+....+
T Consensus        97 ~~~mkdgail~n~Gh~d~E  115 (162)
T PF00670_consen   97 FRQMKDGAILANAGHFDVE  115 (162)
T ss_dssp             HHHS-TTEEEEESSSSTTS
T ss_pred             HHHhcCCeEEeccCcCcee
Confidence            4678999999999876544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.90  E-value=2e-08  Score=82.55  Aligned_cols=92  Identities=16%  Similarity=0.094  Sum_probs=73.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|+.. .+.+++++.+|+|++++..    +.++.  .+.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt----~~iI~--~e~  327 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGN----KDIIT--LEH  327 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCc----ccccC--HHH
Confidence            5899999999999999999999999999999987765444456654 3688899999999999753    23331  235


Q ss_pred             hhcCCCCCEEEEcCCCCHH
Q 044797           83 LKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~  101 (173)
                      .+.+++|.++++++....+
T Consensus       328 ~~~MKpGAiLINvGr~d~E  346 (476)
T PTZ00075        328 MRRMKNNAIVGNIGHFDNE  346 (476)
T ss_pred             HhccCCCcEEEEcCCCchH
Confidence            5789999999999987543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.88  E-value=3e-08  Score=76.55  Aligned_cols=109  Identities=13%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCC--hHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEIS--DPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~--~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      |+||+|||+|+||..+++.+.+. +.++ .++++.  .++.......++...++.+++..+.|+|+.|.|.+ ...+.. 
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~-   78 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV-   78 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH-
Confidence            46999999999999999999875 4555 344443  33333222235667778877745699999999954 334443 


Q ss_pred             CccchhhcCCCCCEEEEcCCC---CHHHHHHHHHHHhcCCcee
Q 044797           78 GHEGVLKGLQKGAVIILQSTI---LPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~---~~~~~~~l~~~l~~~g~~~  117 (173)
                           .+.++.|+.++..++.   .++..+++.+..++.|..+
T Consensus        79 -----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l  116 (265)
T PRK13303         79 -----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARL  116 (265)
T ss_pred             -----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEE
Confidence                 2456678877776653   3444577788887777753

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=98.88  E-value=1.5e-08  Score=79.12  Aligned_cols=106  Identities=13%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++|++|+|++|+-.|+++...|..|..||+-... +...+.|++.. +.+|++..+|+|-+.+|-.++++.++.  ++-
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~t  222 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DET  222 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHH
Confidence            57999999999999999999999999989864322 34455687765 689999999999999998888888874  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTG  112 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~  112 (173)
                      +..+++|..||+.+.+...+...+.+.+..
T Consensus       223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~s  252 (406)
T KOG0068|consen  223 FAKMKKGVRIINVARGGVVDEPALVRALDS  252 (406)
T ss_pred             HHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence            678999999999999998888888888864

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.86  E-value=4.9e-08  Score=77.53  Aligned_cols=135  Identities=10%  Similarity=0.042  Sum_probs=93.7

Q ss_pred             CCCeEEEEeCChhh-HHHHHHHHHCCC--e-EEEEcCChHHHHHHHHc-CCc-eecChhhhhcC--CCEEEEeccChhhh
Q 044797            1 MASKVGFVGLDEYS-VDMAASLIRSGY--K-VQAFEISDPLVDKFFML-GGI-RSASPMDAGKD--VSALVVVISHVDQI   72 (173)
Q Consensus         1 m~~~IgiiG~G~mG-~~ia~~l~~~g~--~-V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~--~dvii~~v~~~~~~   72 (173)
                      |++||||||+|.++ ...+..+.+.+.  + +.++|+++++.+.+.+. ++. ..++.++++++  .|+|++++|+..+.
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence            45799999999666 457788887763  3 56889999998887664 664 67789999875  69999999987776


Q ss_pred             hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCc
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFID  145 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~  145 (173)
                      +.+.       ..+..|+.|+.-  -+.+..+.+++.+..++.|+.+......-..   ..+..++.+++  .+|.+
T Consensus        82 e~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~---p~~~~~k~li~~g~lG~v  148 (342)
T COG0673          82 ELAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFD---PAVQALKELIDSGALGEV  148 (342)
T ss_pred             HHHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcC---HHHHHHHHHHhcCCcCce
Confidence            5554       467788888876  3456777888888888877765433322111   23445555554  35543

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.85  E-value=2.6e-08  Score=77.95  Aligned_cols=105  Identities=15%  Similarity=0.177  Sum_probs=80.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .+|||||.|+||.-+|..|.++||.+..++|+. --+.....|....+.+.+++ +.+|+|+.|+. ...++.++.   .
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekila---t  127 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILA---T  127 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHH---h
Confidence            589999999999999999999999999999986 33333445666666666665 57999999997 456777762   2


Q ss_pred             hhh-cCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797           82 VLK-GLQKGAVIILQSTILPSHMQKLEKTFTG  112 (173)
Q Consensus        82 i~~-~l~~g~~ii~~st~~~~~~~~l~~~l~~  112 (173)
                      ... .++.|+++++..+...-....+.+.|.+
T Consensus       128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPk  159 (480)
T KOG2380|consen  128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK  159 (480)
T ss_pred             cCchhhccceeEeeeeecchhHHHHHHHhCcc
Confidence            222 3788999999988776666677777653

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.84  E-value=2.8e-08  Score=78.21  Aligned_cols=91  Identities=9%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc----CCce-ecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML----GGIR-SASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+++|||+|.+|...++.+.. .+ .+|.+|||++++.+++.+.    +... ..+.+++++++|+|+.|+|.+.   .+
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl  202 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PV  202 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ce
Confidence            589999999999999999975 45 4799999999998876653    2232 4678889999999999999653   34


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSH  102 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~  102 (173)
                      +.      ..++||++|..+++..|..
T Consensus       203 ~~------~~~~~g~hi~~iGs~~p~~  223 (304)
T PRK07340        203 YP------EAARAGRLVVAVGAFTPDM  223 (304)
T ss_pred             eC------ccCCCCCEEEecCCCCCCc
Confidence            41      2368999999998877743

>PLN02494 adenosylhomocysteinase

Probab=98.84  E-value=3.1e-08  Score=81.34  Aligned_cols=100  Identities=17%  Similarity=0.125  Sum_probs=76.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+++.+......+.      .+.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~------~e~  327 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIM------VDH  327 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchH------HHH
Confidence            58999999999999999999999999999999987655555666543 57888899999998766432221      134


Q ss_pred             hhcCCCCCEEEEcCCC-CHHHHHHHHHH
Q 044797           83 LKGLQKGAVIILQSTI-LPSHMQKLEKT  109 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~-~~~~~~~l~~~  109 (173)
                      ++.++++.++++.+.. ...+...|.+.
T Consensus       328 L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        328 MRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             HhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            4679999999999884 34445666665

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.83  E-value=2.5e-08  Score=78.71  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=65.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCcee--cChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||+|.||..+++.|...| .+|+++||++++.+.+.+. |....  ++..+.+.++|+||.|++.+.. ...+  
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~--  255 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV--  255 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH--
Confidence            68999999999999999999866 6899999999988766553 54322  3356777889999999996543 2222  


Q ss_pred             ccchhhcC-CCCCEEEEcCC
Q 044797           79 HEGVLKGL-QKGAVIILQST   97 (173)
Q Consensus        79 ~~~i~~~l-~~g~~ii~~st   97 (173)
                       ....+.. .++.+++|.+.
T Consensus       256 -~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         256 -ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             -HHHHhhCCCCCeEEEEeCC
Confidence             1122222 35778999973

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.83  E-value=4.2e-08  Score=80.06  Aligned_cols=99  Identities=17%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++++|+|+|.+|..+++.+...|.+|+++|+++.+.......|... .+.+++++.+|+||.++..+..+.      ...
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~------~~~  285 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVIT------AEH  285 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHH------HHH
Confidence            5799999999999999999999999999999998876655557654 467888999999999986433222      124


Q ss_pred             hhcCCCCCEEEEcCCCCHH-HHHHHHH
Q 044797           83 LKGLQKGAVIILQSTILPS-HMQKLEK  108 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~-~~~~l~~  108 (173)
                      ...+++|.++++.+....+ ....+.+
T Consensus       286 ~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        286 MEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            5678999999999876542 2344444

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.82  E-value=9e-09  Score=83.75  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=69.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE------EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ------AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~------~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      ++|+|||+|.+|++.|.+|...|++|+      ++|.+.+..+++.+.|..+ .+..++++.||+|++.+|+. .-..+.
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~  114 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVV  114 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHH
Confidence            689999999999999999999999998      4444455666666667755 57999999999999999976 333444


Q ss_pred             cCccchhhcCCCCCEEEEc
Q 044797           77 FGHEGVLKGLQKGAVIILQ   95 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~   95 (173)
                         +++.+.+++|+.+.-+
T Consensus       115 ---~~i~p~LK~Ga~L~fs  130 (487)
T PRK05225        115 ---RAVQPLMKQGAALGYS  130 (487)
T ss_pred             ---HHHHhhCCCCCEEEec
Confidence               5788999998876543

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.79  E-value=3.5e-08  Score=76.10  Aligned_cols=87  Identities=17%  Similarity=0.154  Sum_probs=70.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||+|.-|.+-|.+|+.+|.+|++--|...+ .+++.+.|..+ .+.+|+++.+|+|++.+||.. -.+++.  ++
T Consensus        19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~-q~~vy~--~~   94 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQ-QKEVYE--KE   94 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhh-HHHHHH--HH
Confidence            68999999999999999999999998877666544 66777778775 469999999999999999654 467773  36


Q ss_pred             hhhcCCCCCEEE
Q 044797           82 VLKGLQKGAVII   93 (173)
Q Consensus        82 i~~~l~~g~~ii   93 (173)
                      +.+.|++|+.+.
T Consensus        95 I~p~Lk~G~aL~  106 (338)
T COG0059          95 IAPNLKEGAALG  106 (338)
T ss_pred             hhhhhcCCceEE
Confidence            788888877554

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.79  E-value=1.7e-07  Score=72.47  Aligned_cols=131  Identities=13%  Similarity=0.141  Sum_probs=84.0

Q ss_pred             CeEEEEe-CChhhHHHHHHHHH-CCCeE-EEEcCC-hHHH----HHHHH---cCCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIR-SGYKV-QAFEIS-DPLV----DKFFM---LGGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~-~g~~V-~~~d~~-~~~~----~~~~~---~g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+++| +|+||..+++.+.+ .++++ .++||. +++.    ..+..   .++...++++++...+|+|+.+++ |..
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~-p~~   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT-PEG   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC-hHH
Confidence            6999999 69999999999986 56776 467854 3221    11111   245666788777557999999998 444


Q ss_pred             hhhhhcCccchhhcCCCCCEEEE-cCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCH--hhHHHHHHHHH
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIIL-QSTILPSHMQKLEKTFTGNLTFYILERMFLISSSI--DCFTYLFLVKN  140 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~-~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~--~~~~~~~~~~~  140 (173)
                      ..+.+      ...++.|..++. ++..+++..+++.+..++.|+..+-.+.+-+|-..  +..+.+.++++
T Consensus        81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~  146 (266)
T TIGR00036        81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLG  146 (266)
T ss_pred             HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhcc
Confidence            44443      234566666654 44456777788888887777776665555444332  23344444443

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.78  E-value=1.5e-07  Score=69.87  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCe-EEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYK-VQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|++||||.+|..+.+.+..-  .++ +.+||++.++...+.+. +...+++.++.+++.|+++.|.. ++++++... 
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~-   78 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVP-   78 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhH-
Confidence            4899999999999999887743  344 68999999999876654 55556889999999999999988 677877762 


Q ss_pred             ccchhhcCCCC--CEEEEcCCC-CHHHHHHHHHHHhcCCc
Q 044797           79 HEGVLKGLQKG--AVIILQSTI-LPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        79 ~~~i~~~l~~g--~~ii~~st~-~~~~~~~l~~~l~~~g~  115 (173)
                        +   .|+.|  -++++.+.. .+....++.+..+..+.
T Consensus        79 --~---~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~  113 (255)
T COG1712          79 --K---ILKAGIDVIVMSVGALADEGLRERLRELAKCGGA  113 (255)
T ss_pred             --H---HHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence              2   33443  455666554 34444556555554443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=98.78  E-value=4.4e-08  Score=76.95  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=79.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc-----C--CceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML-----G--GIRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      .+++|||+|..|...++.+...-  .+|.+|+|++++.+++.+.     |  +..+++.+++++++|+|+++++...   
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---  194 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---  194 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---
Confidence            57999999999999999887532  4799999999998876542     4  4567889999999999999998543   


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHH-HHHhcCCceeeec
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLE-KTFTGNLTFYILE  120 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~-~~l~~~g~~~v~~  120 (173)
                      .++.     .+.++||.+|..+++..|.. +++. +.+.....-+++.
T Consensus       195 P~~~-----~~~l~pg~hV~aiGs~~p~~-~El~~~~l~~a~~v~vD~  236 (301)
T PRK06407        195 PIFN-----RKYLGDEYHVNLAGSNYPNR-REAEHSVLNDADIVVTEH  236 (301)
T ss_pred             cEec-----HHHcCCCceEEecCCCCCCc-ccCCHHHHHhCCEEEECC
Confidence            3431     24678999999988877743 3333 3343333344553

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.78  E-value=5.7e-08  Score=76.71  Aligned_cols=92  Identities=13%  Similarity=0.164  Sum_probs=72.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      .++++||+|..+...++.+....  .+|.+|||++++.+++.+.    +  +..+++.+++++++|+|+.|++...   .
T Consensus       129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P  205 (315)
T PRK06823        129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---P  205 (315)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---c
Confidence            57999999999999999887532  4899999999998876542    3  3347889999999999999998543   3


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSH  102 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~  102 (173)
                      ++.     .+.++||.+|..+++..|..
T Consensus       206 ~~~-----~~~l~~G~hi~~iGs~~p~~  228 (315)
T PRK06823        206 LLQ-----AEDIQPGTHITAVGADSPGK  228 (315)
T ss_pred             eeC-----HHHcCCCcEEEecCCCCccc
Confidence            441     24678999999998877743

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.76  E-value=8e-08  Score=76.30  Aligned_cols=91  Identities=14%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHH-----cCC--ceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFM-----LGG--IRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      .+++|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+     .++  ...++.+++++++|+|+.|+|...   
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---  204 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---  204 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---
Confidence            579999999999999887754 44 479999999999887764     143  346778889999999999999542   


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSH  102 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~  102 (173)
                      .++     - +.+++|++|+.+++..|..
T Consensus       205 p~i-----~-~~l~~G~hV~~iGs~~p~~  227 (325)
T PRK08618        205 PVF-----S-EKLKKGVHINAVGSFMPDM  227 (325)
T ss_pred             cch-----H-HhcCCCcEEEecCCCCccc
Confidence            343     2 5679999999998877644

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.75  E-value=1.1e-07  Score=77.47  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=73.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      .+|+|+|+|.+|..+++.+...|.+|+++|+++.+.+.....|+... +.+++++.+|+||.|+..+..+..      ..
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~------~~  275 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG------EH  275 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH------HH
Confidence            58999999999999999999999999999999999888888887544 456788899999999875443332      23


Q ss_pred             hhcCCCCCEEEEcCCC
Q 044797           83 LKGLQKGAVIILQSTI   98 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~   98 (173)
                      .+.+++|.++++.+..
T Consensus       276 l~~mk~GgilvnvG~~  291 (413)
T cd00401         276 FEQMKDGAIVCNIGHF  291 (413)
T ss_pred             HhcCCCCcEEEEeCCC
Confidence            4678999999988754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.74  E-value=2.6e-08  Score=69.29  Aligned_cols=89  Identities=18%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHc--C----CceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFML--G----GIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~--g----~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .++.|||+|.+|.+++..|...|.+ |+++||+.++.+.+.+.  +    ....++..+.+.++|+||.|+|.+..   .
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~---~   89 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP---I   89 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---S
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---c
Confidence            5899999999999999999999976 99999999999887664  1    12344555678899999999986543   2


Q ss_pred             hcCccchhhcCCCC-CEEEEcC
Q 044797           76 FFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      +.  ++..+...+. ++++|.+
T Consensus        90 i~--~~~~~~~~~~~~~v~Dla  109 (135)
T PF01488_consen   90 IT--EEMLKKASKKLRLVIDLA  109 (135)
T ss_dssp             ST--HHHHTTTCHHCSEEEES-
T ss_pred             cC--HHHHHHHHhhhhceeccc
Confidence            21  1112222111 4899996

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.74  E-value=1.7e-07  Score=73.89  Aligned_cols=105  Identities=12%  Similarity=0.116  Sum_probs=73.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCCh-HHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISD-PLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      .||+|+|+|+||..+++.+.+. ++++. ++++++ ++..  ...++....+..++..++|+|++|+|+..+.+.+    
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~----   77 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQ----   77 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHH----
Confidence            5999999999999999999765 67875 689985 4432  1234444456667778899999999976654433    


Q ss_pred             cchhhcCCCCCEEEEcCCC---CHHHHHHHHHHHhcC-Cce
Q 044797           80 EGVLKGLQKGAVIILQSTI---LPSHMQKLEKTFTGN-LTF  116 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~---~~~~~~~l~~~l~~~-g~~  116 (173)
                         .+.+..|..+|++...   .|+..+++.+..++. ++.
T Consensus        78 ---~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        78 ---APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             ---HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence               3457788888888542   245566777766653 443

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.74  E-value=4.2e-08  Score=75.92  Aligned_cols=73  Identities=18%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||. |.||.+|+..|.++|++|++|...              +.++++.+++||+||++++.+..++..      
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~------  218 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE------  218 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH------
Confidence            68999999 999999999999999999999422              126788899999999999977665443      


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                         .+++|+++||.+..
T Consensus       219 ---~ik~GavVIDvgin  232 (284)
T PRK14179        219 ---FVKEGAVVIDVGMN  232 (284)
T ss_pred             ---HccCCcEEEEecce
Confidence               37899999999764

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=98.73  E-value=8.8e-08  Score=75.74  Aligned_cols=110  Identities=11%  Similarity=0.095  Sum_probs=81.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----cC---CceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM----LG---GIRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~----~g---~~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      ..++|||+|.++...++.+..--  -+|.+|+|++++.+++..    .+   +..+.+.++++++||+|+.|+|+..   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            46899999999999999987532  589999999999988764    22   4678889999999999999999654   


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      .++     ..+.++||.+|...++-.|...+--.+.+.+.+.-+++.
T Consensus       208 Pil-----~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~  249 (330)
T COG2423         208 PVL-----KAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDS  249 (330)
T ss_pred             Cee-----cHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcC
Confidence            444     235688999999998766654333333443333444443

>PRK10206 putative oxidoreductase; Provisional

Probab=98.72  E-value=5.5e-07  Score=72.04  Aligned_cols=134  Identities=10%  Similarity=0.061  Sum_probs=87.0

Q ss_pred             CCeEEEEeCChhhHH-HHHHHHH--CCCeEE-EEcCChHHHHHHHHcC-CceecChhhhhc--CCCEEEEeccChhhhhh
Q 044797            2 ASKVGFVGLDEYSVD-MAASLIR--SGYKVQ-AFEISDPLVDKFFMLG-GIRSASPMDAGK--DVSALVVVISHVDQIDD   74 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-ia~~l~~--~g~~V~-~~d~~~~~~~~~~~~g-~~~~~~~~~~~~--~~dvii~~v~~~~~~~~   74 (173)
                      +.||||||+|.++.. .+..+..  .+.++. ++|+++++.+...+.+ +...++.+++++  +.|+|++|+|+..+.+.
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~   80 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY   80 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence            358999999998753 3454533  356764 7899986653333344 556778999986  57999999997777655


Q ss_pred             hhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCc
Q 044797           75 IFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFID  145 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~  145 (173)
                      +.       +.++.|+.|+..-  +.+....+++.+..+++|+.+......-..   ..+..++.+++.  +|.+
T Consensus        81 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~---p~~~~~k~li~~g~iG~i  145 (344)
T PRK10206         81 AK-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFD---SCFLTAKKAIESGKLGEI  145 (344)
T ss_pred             HH-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeEC---HHHHHHHHHHHcCCCCCe
Confidence            54       4556777776552  345677888888888888875443322221   234555566543  5543

>PRK11579 putative oxidoreductase; Provisional

Probab=98.69  E-value=5e-07  Score=72.27  Aligned_cols=106  Identities=13%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      .||||||+|.+|.. .+..+.+. +.++. ++|+++++..  .+. +....++.+++++  +.|+|++|+|+..+.+.+.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~   82 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK   82 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            59999999999984 56666553 57764 7899987654  222 4556788999986  5799999999777665544


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCcee
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~  117 (173)
                             ..++.|+.|+..  -+.+....+++.+..++.|+.+
T Consensus        83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l  118 (346)
T PRK11579         83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL  118 (346)
T ss_pred             -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence                   456778887755  2346677788888888877764

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=98.68  E-value=8e-08  Score=75.90  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=61.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      .+++|||+|..|...++.+.. .+ .+|.+|+|++++.+++.+.    +  +..+++.+++++++|+|+.|+|.... ..
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-AP  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC-Cc
Confidence            479999999999999998865 33 4799999999998876552    3  34678899999999999999985431 13


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~  101 (173)
                      ++.     .+.+++|.+|..+++..|.
T Consensus       208 ~~~-----~~~l~~g~hi~~iGs~~~~  229 (313)
T PF02423_consen  208 VFD-----AEWLKPGTHINAIGSYTPG  229 (313)
T ss_dssp             SB------GGGS-TT-EEEE-S-SSTT
T ss_pred             ccc-----HHHcCCCcEEEEecCCCCc
Confidence            441     2468899999999887764

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.67  E-value=8.6e-08  Score=65.73  Aligned_cols=102  Identities=17%  Similarity=0.275  Sum_probs=66.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHH-CCCeE-EEEcCChH-HH----HHH---HHcCCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIR-SGYKV-QAFEISDP-LV----DKF---FMLGGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~-~g~~V-~~~d~~~~-~~----~~~---~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |||+++|+ |+||+.+++.+.+ .++++ -+++++++ ..    ..+   ...++...++.+++++.+|++|-.+. |..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~-p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN-PDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-hHH
Confidence            58999999 9999999999998 67775 57788872 11    111   12367778899999999999998884 555


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHh
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFT  111 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~  111 (173)
                      +.+.+      ...++.+..++..+|+.. +..+++.+..+
T Consensus        80 ~~~~~------~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   80 VYDNL------EYALKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHHH------HHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             hHHHH------HHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            55554      123344777777777654 44556665443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06046 alanine dehydrogenase; Validated

Probab=98.67  E-value=1.5e-07  Score=74.85  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-C-CeEEEEcCChHHHHHHHHc-----C--CceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-G-YKVQAFEISDPLVDKFFML-----G--GIRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      .+++|||+|.+|...++.+... + .+|.+|||++++.+++.+.     +  +...++.+++++ +|+|++|+|...   
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---  205 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---  205 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---
Confidence            5799999999999999998743 3 3688999999988876552     3  234667888887 999999999532   


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~  101 (173)
                      .++.     .+.+++|++|..+++..|.
T Consensus       206 P~~~-----~~~l~~g~hV~~iGs~~p~  228 (326)
T PRK06046        206 PVVK-----AEWIKEGTHINAIGADAPG  228 (326)
T ss_pred             cEec-----HHHcCCCCEEEecCCCCCc
Confidence            3441     2457899999999887764

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.66  E-value=2e-07  Score=74.12  Aligned_cols=90  Identities=12%  Similarity=0.080  Sum_probs=69.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc-----CCc--eecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML-----GGI--RSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      .++++||+|.+|...++.|.. .+ .+|++|+|++++.+.+.+.     ++.  ..++.+++++++|+|+.|+|...   
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---  206 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---  206 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---
Confidence            479999999999999999973 56 4699999999998877542     433  35778888999999999998533   


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCH
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILP  100 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~  100 (173)
                      .++.     .+.+++|.++...++-.|
T Consensus       207 p~i~-----~~~l~~g~~i~~vg~~~p  228 (326)
T TIGR02992       207 PILH-----AEWLEPGQHVTAMGSDAE  228 (326)
T ss_pred             cEec-----HHHcCCCcEEEeeCCCCC
Confidence            3331     235789999887766444

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.65  E-value=6e-07  Score=70.69  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=48.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----Hc----C--Cce--ecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----ML----G--GIR--SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~~----g--~~~--~~~~~~~~~~~dvii~~v~   67 (173)
                      |+||+|||+|.||..++..+...|. +|.++|+++++.+...    +.    +  .+.  +.+. +.+++||+||+++.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            4799999999999999999998875 9999999887654311    11    1  122  2344 55889999999863

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.65  E-value=1.2e-06  Score=68.93  Aligned_cols=131  Identities=11%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHH----HHc--------CCceecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKF----FML--------GGIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~----~~~--------g~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      |||+|||+|.||..+|..++.+|+ +|.++|++++..+..    .+.        .++.+.+.++ +++||+||++++.|
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            599999999999999999999886 899999976644311    110        1223456655 78999999998743


Q ss_pred             hh---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHH-HHHHHHHHhcCCceeeeceeeeeecCHhhHH
Q 044797           70 DQ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSH-MQKLEKTFTGNLTFYILERMFLISSSIDCFT  133 (173)
Q Consensus        70 ~~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~-~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~  133 (173)
                      ..               ++++.   +.+.++. ++..++..++  |.+ .-......  .|  +-..+++.+++..+...
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~---~~I~~~~-p~~~iIv~tN--P~di~t~~~~~~--sg--~~~~rviG~g~~lds~R  150 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVT---GRIMEHS-PNPIIVVVSN--PLDAMTYVAWQK--SG--FPKERVIGQAGVLDSAR  150 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecC--cHHHHHHHHHHH--HC--cCHHHEEEeccchHHHH
Confidence            21               11222   2344554 4556665554  322 22222222  12  22234666666655544


Q ss_pred             HHHHHHHhhCC
Q 044797          134 YLFLVKNEFFI  144 (173)
Q Consensus       134 ~~~~~~~~~g~  144 (173)
                      .-..+-+.++.
T Consensus       151 ~~~~la~~l~v  161 (305)
T TIGR01763       151 FRTFIAMELGV  161 (305)
T ss_pred             HHHHHHHHhCc
Confidence            44444455553

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=98.64  E-value=1.7e-07  Score=74.83  Aligned_cols=94  Identities=14%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      .+++|||+|..+...++.+..-.  .+|.+|+|++++.+++.+.    +  +..+++.+++++++|+|+.+++... ...
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~P  208 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NAT  208 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCc
Confidence            57999999999999988776432  5899999999998776542    3  4457889999999999999997432 123


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSH  102 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~  102 (173)
                      ++.     .+.+++|.+|..+++..|..
T Consensus       209 vl~-----~~~lkpG~hV~aIGs~~p~~  231 (346)
T PRK07589        209 ILT-----DDMVEPGMHINAVGGDCPGK  231 (346)
T ss_pred             eec-----HHHcCCCcEEEecCCCCCCc
Confidence            341     24678999999888776643

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.62  E-value=9.7e-07  Score=70.46  Aligned_cols=109  Identities=12%  Similarity=0.109  Sum_probs=85.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccC----hhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISH----VDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~----~~~~~~   74 (173)
                      .||+|||+ .||...++.+.+.  ++++ -++|+++++.+++.+. |+...++.++++++.|++++++|.    ..+.+.
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            58999999 7899999988875  4665 4789999999887764 777788999999888998888863    233322


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +       .+.++.|+.|+..-....++.+++.+..+++|+.+..
T Consensus        83 a-------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v  120 (343)
T TIGR01761        83 A-------RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV  120 (343)
T ss_pred             H-------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            2       3467789999888776777888888888888887654

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.62  E-value=1.9e-07  Score=75.34  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=67.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCce---e---cChhhhhcCCCEEEEeccChh-hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIR---S---ASPMDAGKDVSALVVVISHVD-QIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~---~---~~~~~~~~~~dvii~~v~~~~-~~~~   74 (173)
                      .++.|+|+|.+|...++.+...|.+|+++|+++++.+.+... +...   .   .++.+.++++|+||.+++.+. ....
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~  247 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPK  247 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCc
Confidence            369999999999999999999999999999999988777554 3211   1   234566789999999984321 1122


Q ss_pred             hhcCccchhhcCCCCCEEEEcCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++.  .+....++++.+|+|.+.
T Consensus       248 lit--~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       248 LVS--NSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             CcC--HHHHhcCCCCCEEEEEec
Confidence            221  234466899999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.62  E-value=5.3e-07  Score=80.60  Aligned_cols=112  Identities=9%  Similarity=-0.012  Sum_probs=81.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC-Ce-------------EEEEcCChHHHHHHHHc--CC---ce-ecChhhh---hcC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG-YK-------------VQAFEISDPLVDKFFML--GG---IR-SASPMDA---GKD   58 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~-------------V~~~d~~~~~~~~~~~~--g~---~~-~~~~~~~---~~~   58 (173)
                      ++||+|||+|.||...++.|.+.. .+             |.+.|+++++.+++.+.  ++   .. ..+.+++   +++
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~  648 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ  648 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence            368999999999999999998653 33             89999999988877653  32   22 3455544   367


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      +|+|++|+|...+. .+.      ...++.|+.+++.+. .....+++.+..++.|+.++.+.
T Consensus       649 ~DaVIsalP~~~H~-~VA------kaAieaGkHvv~eky-~~~e~~~L~e~Ak~AGV~~m~e~  703 (1042)
T PLN02819        649 VDVVISLLPASCHA-VVA------KACIELKKHLVTASY-VSEEMSALDSKAKEAGITILCEM  703 (1042)
T ss_pred             CCEEEECCCchhhH-HHH------HHHHHcCCCEEECcC-CHHHHHHHHHHHHHcCCEEEECC
Confidence            99999999965442 332      345678889998874 45567788888888888766543

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.61  E-value=2.3e-07  Score=63.28  Aligned_cols=91  Identities=19%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             eEEEEe-CChhhHHHHHHHHHC-CCeEEEE-cCChHHHHHHHHcC--Cc-e---ecChhhh-hcCCCEEEEeccChhhhh
Q 044797            4 KVGFVG-LDEYSVDMAASLIRS-GYKVQAF-EISDPLVDKFFMLG--GI-R---SASPMDA-GKDVSALVVVISHVDQID   73 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~-d~~~~~~~~~~~~g--~~-~---~~~~~~~-~~~~dvii~~v~~~~~~~   73 (173)
                      ||+++| .|.+|..++..+... ++++... +++.++.+.+...+  +. .   ..+..++ ..++|+||+|+|+..+.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            689999 599999999999884 7777655 65543333333222  11 0   1111222 247999999999765444


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                       ++   ..+...+.+|++++|+|+.
T Consensus        81 -~~---~~~~~~~~~g~~viD~s~~  101 (122)
T smart00859       81 -IA---PLLPKAAEAGVKVIDLSSA  101 (122)
T ss_pred             -HH---HHHHhhhcCCCEEEECCcc
Confidence             33   1234557899999999864

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.58  E-value=4.8e-07  Score=72.03  Aligned_cols=90  Identities=12%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc-----CCc--eecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML-----GGI--RSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      ++++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+.     ++.  ..++.+++++++|+|+.++|...   
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~---  209 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE---  209 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---
Confidence            589999999999999998875 44 5799999999999887652     443  35778899999999999998532   


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCH
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILP  100 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~  100 (173)
                      .++.     .+.+++|.++....+..|
T Consensus       210 p~i~-----~~~l~~g~~v~~vg~d~~  231 (330)
T PRK08291        210 PILK-----AEWLHPGLHVTAMGSDAE  231 (330)
T ss_pred             cEec-----HHHcCCCceEEeeCCCCC
Confidence            3331     124678888877655433

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.56  E-value=1.9e-07  Score=76.72  Aligned_cols=68  Identities=16%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCce--ecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIR--SASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      ++|+|+|+|.||..+++.|...|. +|+++||++++.+.+.+. |...  ..+..+.+.++|+||.|++.+.
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence            589999999999999999999997 799999999988766553 4332  2345567789999999998654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.56  E-value=5.3e-07  Score=70.12  Aligned_cols=115  Identities=10%  Similarity=-0.003  Sum_probs=78.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-C----CceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-G----GIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      +++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.+. +    +....+..+.+.++|+||.|+|.+..- ..-
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~-~~~  202 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG-ELP  202 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC-CCC
Confidence            57899999999999999999999 7899999999998877653 1    111112345667899999999854321 000


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .. .-....++++.+++|.... |..+ .+.+..++.|.+.++.-
T Consensus       203 ~~-~~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~~~~~G~  244 (278)
T PRK00258        203 LP-PLPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGARTIDGL  244 (278)
T ss_pred             CC-CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcCeecCCH
Confidence            00 0012456788999999763 4333 45556667788766543

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.55  E-value=5.1e-07  Score=66.66  Aligned_cols=63  Identities=13%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |||+|||. |.||..+++.|.++|+.|+                          ++++|+||+|+| ...+.+++   ++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavP-v~~~~~~i---~~   50 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVP-IDAALNYI---ES   50 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCC-HHHHHHHH---HH
Confidence            58999987 9999999999999999986                          368999999999 55566666   22


Q ss_pred             hhhcCCCCCEEEEcCCCCHH
Q 044797           82 VLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~  101 (173)
                      +.      .+++|.++.+..
T Consensus        51 ~~------~~v~Dv~SvK~~   64 (197)
T PRK06444         51 YD------NNFVEISSVKWP   64 (197)
T ss_pred             hC------CeEEeccccCHH
Confidence            22      378999988764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.54  E-value=3.8e-06  Score=66.27  Aligned_cols=67  Identities=19%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHH-HHHc-CC-------ceecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDK-FFML-GG-------IRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~-~~~~-g~-------~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      |||+|||+|.+|.+++..|+..|  .++.++|+++++.+. ..+. +.       ....+..+.+++||++|++.+.+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            48999999999999999999999  589999999877653 2211 11       11122335688999999998743

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=98.53  E-value=4.3e-07  Score=75.65  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      ++++|+|+|.+|.+++..|.+.|++|+++||++++.+.+.+. +....  .+.. .+.++|+||.|+|....+...    
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~~~~~~----  407 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSVTIPKA----  407 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCCcchhH----
Confidence            579999999999999999999999999999999888776553 21111  1222 256899999999965432111    


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                            +.  .+++|.....+.+.  +.+.+++.|.+.++..
T Consensus       408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G~  439 (477)
T PRK09310        408 ------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIYGY  439 (477)
T ss_pred             ------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEECcH
Confidence                  11  37899988665543  6677777888877654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.53  E-value=4.3e-07  Score=70.81  Aligned_cols=113  Identities=11%  Similarity=-0.011  Sum_probs=77.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-----C-Cce--ecChhhhhcCCCEEEEeccChhhh-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-----G-GIR--SASPMDAGKDVSALVVVISHVDQI-   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g-~~~--~~~~~~~~~~~dvii~~v~~~~~~-   72 (173)
                      +++.|+|+|.+|.+++..|...|. +|+++||+.++.+.+.+.     . ...  .++..+.++++|+||.|+|..-.- 
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~  207 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKH  207 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCC
Confidence            479999999999999999999997 799999999998877542     1 111  223345677899999999843210 


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .....    -...++++.++.|..-.... + .+.+..+++|.+.++.-
T Consensus       208 ~~~~~----~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~G~  250 (284)
T PRK12549        208 PGLPL----PAELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLDGG  250 (284)
T ss_pred             CCCCC----CHHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEecCH
Confidence            01000    01346778899998764333 2 45566667888766554

>PRK06199 ornithine cyclodeaminase; Validated

Probab=98.53  E-value=4.6e-07  Score=73.28  Aligned_cols=90  Identities=11%  Similarity=0.050  Sum_probs=67.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC---CCeEEEEcCChHHHHHHHH----c--C---CceecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS---GYKVQAFEISDPLVDKFFM----L--G---GIRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~---g~~V~~~d~~~~~~~~~~~----~--g---~~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      .++++||+|.++...++.+...   --+|.+|+|++++.+++.+    .  +   +..+++.++++++||+|+.|++...
T Consensus       156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~  235 (379)
T PRK06199        156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGET  235 (379)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCC
Confidence            5799999999999999998763   2489999999999877543    1  2   4467889999999999999997432


Q ss_pred             ---hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 ---QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ---~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                         ....++.     .+.+++|.+|+..++
T Consensus       236 ~~~s~~Pv~~-----~~~lkpG~hv~~ig~  260 (379)
T PRK06199        236 GDPSTYPYVK-----REWVKPGAFLLMPAA  260 (379)
T ss_pred             CCCCcCcEec-----HHHcCCCcEEecCCc
Confidence               1123331     245788988876544

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.51  E-value=5.8e-07  Score=64.76  Aligned_cols=72  Identities=19%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             CeEEEEeCChh-hHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEY-SVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~m-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|.|||.|.| |..+++.|.+.|.+|++++|+.              .+..+.+.++|+||++++.+.    ++.    
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~----  102 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVK----  102 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eec----
Confidence            68999999997 8889999999999999999874              245667889999999998653    231    


Q ss_pred             hhhcCCCCCEEEEcCC
Q 044797           82 VLKGLQKGAVIILQST   97 (173)
Q Consensus        82 i~~~l~~g~~ii~~st   97 (173)
                       .+.++++.+++|.+.
T Consensus       103 -~~~~~~~~viIDla~  117 (168)
T cd01080         103 -GDMVKPGAVVIDVGI  117 (168)
T ss_pred             -HHHccCCeEEEEccC
Confidence             124677899999975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN00203 glutamyl-tRNA reductase

Probab=98.51  E-value=2.6e-07  Score=77.41  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=55.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--CCc----eecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--GGI----RSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~~----~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      .+|+|||+|.||..++++|...|. +|+++||++++.+.+.+.  +..    ..++..+++.++|+||.|++.+
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~  340 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE  340 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence            589999999999999999999996 799999999999887763  321    2345667788999999998744

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.47  E-value=3.4e-07  Score=75.08  Aligned_cols=68  Identities=15%  Similarity=0.126  Sum_probs=55.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCc--eecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGI--RSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      .+|+|+|+|.||..+++.|...| .+|+++||++++.+.+.+. +..  ...+..+.+.++|+||.|++.+.
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~  252 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH  252 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence            58999999999999999999999 7899999999987766543 432  22455677889999999997554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.44  E-value=1.4e-06  Score=70.63  Aligned_cols=107  Identities=11%  Similarity=0.077  Sum_probs=72.3

Q ss_pred             EEEEeCChhhHHHHHHHHHCC-C-eEEEEcCChHHHHHHHHc--C--Cce-------ecChhhhhcCCCEEEEeccChhh
Q 044797            5 VGFVGLDEYSVDMAASLIRSG-Y-KVQAFEISDPLVDKFFML--G--GIR-------SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g-~-~V~~~d~~~~~~~~~~~~--g--~~~-------~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |.|+|+|.+|+.+++.|.+.+ + +|++.||+.++++++.+.  +  +..       ..++.++++++|+||.|+|. ..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp-~~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP-FF   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG-GG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc-ch
Confidence            789999999999999999887 4 899999999999887652  1  111       11245678899999999984 33


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      -..++      ...+..|..++|.+. ......++.+..++.|+.++.
T Consensus        80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~  120 (386)
T PF03435_consen   80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALP  120 (386)
T ss_dssp             HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-
T ss_pred             hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEe
Confidence            34443      234567889999433 244566777777777876654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.43  E-value=2.1e-06  Score=67.61  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc--------C--CceecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML--------G--GIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~--------g--~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      +||+|||+|.+|++++..|+..|  +++.++|+++++.+.+...        +  ........+.++++|+||+++..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence            48999999999999999999999  6899999998887654321        1  12222333457899999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.42  E-value=2.8e-06  Score=64.19  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=72.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHHHHc-C-------CceecChhhh-hcCCCE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKFFML-G-------GIRSASPMDA-GKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~-~~~~dv   61 (173)
                      .++|+|.|+|++|+.+++.|.+.|.+|+ +.|.          +.+.+.+..+. |       .... +.++. -.+||+
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv  109 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI  109 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence            4789999999999999999999999987 7777          66666554443 2       1111 22232 247999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ++-|.+.+....+.+       +.++  .-+|-.++..|-+ .+..+.|+++|+.|+.+.
T Consensus       110 lip~a~~~~i~~~~~-------~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~~~PD~  159 (227)
T cd01076         110 LIPAALENQITADNA-------DRIK--AKIIVEAANGPTT-PEADEILHERGVLVVPDI  159 (227)
T ss_pred             EEecCccCccCHHHH-------hhce--eeEEEeCCCCCCC-HHHHHHHHHCCCEEEChH
Confidence            999987544333333       2232  3344444444544 677888999999998654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.41  E-value=8.4e-06  Score=64.63  Aligned_cols=63  Identities=13%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHH--H--HH----cC--Cc--eecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDK--F--FM----LG--GI--RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~--~--~~----~g--~~--~~~~~~~~~~~~dvii~~v   66 (173)
                      +||+|||+|.||+.++..+...| .++.++|+++++.+.  +  ..    .+  ..  ...+++ .+++||+|+++.
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            59999999999999999999888 689999998865432  1  11    11  12  224444 779999999998

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.41  E-value=1.1e-05  Score=62.23  Aligned_cols=138  Identities=15%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             EEEEeC-ChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHHH-------c----CCceecChhhhhcCCCEEEEeccC
Q 044797            5 VGFVGL-DEYSVDMAASLIRSG----YKVQAFEISDPLVDKFFM-------L----GGIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         5 IgiiG~-G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~-------~----g~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      |+|||+ |.||..++..|+..|    .++.++|+++++++....       .    .+..++++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            689999 999999999999888    789999999877654221       1    122345557889999999996521


Q ss_pred             h---------------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHH-HHHHHHHHhcCCceeeeceeeeeecCHhhH
Q 044797           69 V---------------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSH-MQKLEKTFTGNLTFYILERMFLISSSIDCF  132 (173)
Q Consensus        69 ~---------------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~-~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~  132 (173)
                      +               +.++++.   +++.++. |+..++..++  |.+ .-.+.....    .+-..+++.+++ .+..
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~~-p~a~~i~~tN--P~d~~t~~~~~~s----g~~~~kviG~~~-ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIG---DNIEKYS-PDAWIIVVSN--PVDIITYLVWRYS----GLPKEKVIGLGT-LDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecC--cHHHHHHHHHHHh----CCCchhEEEeec-chHH
Confidence            1               1122333   2344444 5666666643  332 222222221    222344666776 4444


Q ss_pred             HHHHHHHHhhCCc------eeecCCCc
Q 044797          133 TYLFLVKNEFFID------KKVNISGQ  153 (173)
Q Consensus       133 ~~~~~~~~~~g~~------~~~g~~Gs  153 (173)
                      ..-..+-+.++..      ...|..|.
T Consensus       150 r~~~~la~~l~v~~~~v~~~v~G~hg~  176 (263)
T cd00650         150 RFRRILAEKLGVDPDDVKVYILGEHGG  176 (263)
T ss_pred             HHHHHHHHHhCCCccceEEEEEEcCCC
Confidence            4444444556542      23577666

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.41  E-value=1.1e-06  Score=70.21  Aligned_cols=90  Identities=18%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH----c-CC--ceecChhh-hhcCCCEEEEeccCh
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM----L-GG--IRSASPMD-AGKDVSALVVVISHV   69 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~----~-g~--~~~~~~~~-~~~~~dvii~~v~~~   69 (173)
                      ||+||+|+|+ |.+|..+++.|.++ ++++. ++++.. ..+.+.+    . +.  ....+.++ ..+++|+|++|+|+.
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~   79 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG   79 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence            7899999997 99999999999876 56764 455432 2122221    1 10  01222222 456799999999976


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .+. ++.      ...+..|+.|||.|+-
T Consensus        80 ~~~-~~v------~~a~~aG~~VID~S~~  101 (343)
T PRK00436         80 VSM-DLA------PQLLEAGVKVIDLSAD  101 (343)
T ss_pred             HHH-HHH------HHHHhCCCEEEECCcc
Confidence            543 333      1234578999999864

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.40  E-value=1.3e-05  Score=62.30  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce--------------ecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797           13 YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR--------------SASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus        13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ||+.+|..|.++|++|++++|+ ++.+.+.+.|...              .+++++ ....|+||+++|. .++++++  
T Consensus         2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs-~~~~~~l--   76 (293)
T TIGR00745         2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKA-YQTEEAA--   76 (293)
T ss_pred             chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccc-hhHHHHH--
Confidence            7999999999999999999997 6677776655321              112233 5679999999995 4677777  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT  111 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~  111 (173)
                       +.+.+.+.+++.|+...++- ...+.+.+.+.
T Consensus        77 -~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~  107 (293)
T TIGR00745        77 -ALLLPLIGKNTKVLFLQNGL-GHEERLRELLP  107 (293)
T ss_pred             -HHhHhhcCCCCEEEEccCCC-CCHHHHHHHhC
Confidence             46778888888888776542 23345555554

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=98.40  E-value=2.9e-06  Score=66.03  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=64.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CCCeEE-EEcCChHHH--HHHHHcCCce-ecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SGYKVQ-AFEISDPLV--DKFFMLGGIR-SASPMDAGK--DVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~--~~dvii~~v~~~~~~~~v   75 (173)
                      .||+|||+|++|..++..+.+ .+.++. ++|+++++.  +...+.|+.. ..+.+++++  +.|+|++++|+..+.+..
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            589999999999999877765 456664 688888753  3344457654 446777775  578999999977665444


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                      .       ..++.|+.+++.+...
T Consensus        82 ~-------~al~aGk~VIdekPa~   98 (285)
T TIGR03215        82 R-------LLAELGKIVIDLTPAA   98 (285)
T ss_pred             H-------HHHHcCCEEEECCccc
Confidence            3       3456788888876543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.39  E-value=1.8e-06  Score=64.33  Aligned_cols=138  Identities=15%  Similarity=0.084  Sum_probs=88.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcC--------------CceecChhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLG--------------GIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g--------------~~~~~~~~~~~~   57 (173)
                      -||+|+|.|.+|+++|..+++.|++|..||..++.+..           +.+.|              +..++++.|+.+
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk   83 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK   83 (313)
T ss_pred             cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence            58999999999999999999999999999998876532           22222              124778899999


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC--HHHH-HHHHHHHhcCCceeeece--------eeeee
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL--PSHM-QKLEKTFTGNLTFYILER--------MFLIS  126 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~--~~~~-~~l~~~l~~~g~~~v~~~--------~~~~~  126 (173)
                      ++=.|-.|+|.+-+++.-++  .++.+.+ ...+|+.+||..  |... ..+...-...-.|-++.+        +..--
T Consensus        84 ~Ai~iQEcvpE~L~lkk~ly--~qlD~i~-d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPw  160 (313)
T KOG2305|consen   84 GAIHIQECVPEDLNLKKQLY--KQLDEIA-DPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPW  160 (313)
T ss_pred             hhhhHHhhchHhhHHHHHHH--HHHHHhc-CCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCC
Confidence            99889999997777665553  2343334 455666555433  3321 122211111112222222        22223


Q ss_pred             cCHhhHHHHHHHHHhhC
Q 044797          127 SSIDCFTYLFLVKNEFF  143 (173)
Q Consensus       127 g~~~~~~~~~~~~~~~g  143 (173)
                      .+++..++...++..+|
T Consensus       161 Tsp~tVdrt~~lM~sig  177 (313)
T KOG2305|consen  161 TSPDTVDRTRALMRSIG  177 (313)
T ss_pred             CChhHHHHHHHHHHHhC
Confidence            45677888888888888

>PRK04148 hypothetical protein; Provisional

Probab=98.39  E-value=5.2e-06  Score=57.38  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=67.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----ecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----SASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++|..||+| -|..+|..|.+.|++|++.|.+++..+.+.+.+...     .+...++-+++|+|...=|++.-.+.++ 
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~-   95 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL-   95 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence            579999999 999999999999999999999999998887776432     2334466789999999999665555554 


Q ss_pred             CccchhhcCCCCCEEEEcCC
Q 044797           78 GHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st   97 (173)
                         ++...+..+-+|.-.+.
T Consensus        96 ---~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         96 ---ELAKKINVPLIIKPLSG  112 (134)
T ss_pred             ---HHHHHcCCCEEEEcCCC
Confidence               45555544444444443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.39  E-value=1.2e-06  Score=66.13  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH--cCCce---ec----Chhhh-hcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM--LGGIR---SA----SPMDA-GKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~---~~----~~~~~-~~~~dvii~~v~~~   69 (173)
                      |++.|+|+|++|..+|+.|.+.|++|.++|+++++.++..+  .....   ..    .+.++ ++++|+++.++.++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            58999999999999999999999999999999999888444  33221   11    22333 56899999999854

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=98.38  E-value=6.3e-06  Score=70.04  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=71.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec---Chhhh-----hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA---SPMDA-----GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---~~~~~-----~~~~dvii~~v~~~~~~~~   74 (173)
                      .+|-|+|+|++|+.+++.|.+.|++++++|+|+++.+.+++.|.....   +..+.     ++++|.++.+++++.....
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            468899999999999999999999999999999999999887654211   11222     4589999999987654433


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +..   .+.+. .++..++...+ +++..    +.+++.|..++.
T Consensus       498 iv~---~~~~~-~~~~~iiar~~-~~~~~----~~l~~~Gad~vv  533 (558)
T PRK10669        498 IVA---SAREK-RPDIEIIARAH-YDDEV----AYITERGANQVV  533 (558)
T ss_pred             HHH---HHHHH-CCCCeEEEEEC-CHHHH----HHHHHcCCCEEE
Confidence            432   12222 34444443322 34332    334556776544

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.38  E-value=1.1e-05  Score=63.57  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CeEEEEeCChhhHHHHHHHH---HCCCeEE-EEcCChHHHHHHHHc-CC---ceecChhhhhcC--CCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLI---RSGYKVQ-AFEISDPLVDKFFML-GG---IRSASPMDAGKD--VSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~---~~g~~V~-~~d~~~~~~~~~~~~-g~---~~~~~~~~~~~~--~dvii~~v~~~~~~   72 (173)
                      -|+||+|+|.|+.-.++.|.   ..+++|+ +.+|+.+++..+.+. ++   +...+.++++++  +|+|.+..|.+++.
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~   86 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY   86 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence            58999999999999999885   3467764 779998888877664 44   466789999876  49999999999887


Q ss_pred             hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeec
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +-+.+       .+..++.+.-.  -.......+++.+..+.+|+.+.+.
T Consensus        87 evv~l-------~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg  129 (351)
T KOG2741|consen   87 EVVML-------ALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG  129 (351)
T ss_pred             HHHHH-------HHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence            66652       23445554433  2345667788888888889766554

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.36  E-value=3.6e-06  Score=58.95  Aligned_cols=65  Identities=17%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-------c---CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM-------L---GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~-------~---g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+ |++|+.++..|...+  .++.++|+++++++....       .   .........+.++++|+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            69999999 999999999998877  479999999877654211       1   12334456677899999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.36  E-value=1.3e-06  Score=70.95  Aligned_cols=67  Identities=16%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCc--eecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGI--RSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      .++.|||+|.||.-.|++|.++| .+|++.||+.++.+.+.+. |..  ..++..+.+.++|+||+++..|
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~  249 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP  249 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence            57999999999999999999999 6899999999999887764 533  3455667889999999998644

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.35  E-value=1.1e-06  Score=71.80  Aligned_cols=68  Identities=6%  Similarity=-0.015  Sum_probs=56.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-C-Cce--ecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-G-GIR--SASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g-~~~--~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      ++|.|||+|.||..+++.|...|. ++++++|+.++.+.+.+. + ...  .++..+.+.++|+||.|++.|.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence            589999999999999999999995 799999999998887764 3 222  2445677889999999998654

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.35  E-value=1.9e-05  Score=62.61  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHH--HH---HH---cC----CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVD--KF---FM---LG----GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~--~~---~~---~g----~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +||+|||+|.||+.++..++..|. ++.++|+++++.+  .+   ..   .+    +..+.+. +.+++||+||++.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            589999999999999999998895 8999999988542  11   11   11    1223444 5689999999976

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=98.33  E-value=9.2e-06  Score=69.62  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=73.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee---cChhhh-----hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS---ASPMDA-----GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~~dvii~~v~~~~~~~~   74 (173)
                      .+|-|+|+|++|+.+++.|.++|+++++.|.|+++.+.+++.|....   .+..+.     ++++|.++++++++.....
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~  480 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK  480 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence            57889999999999999999999999999999999999988775431   111222     5689999999998765545


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +..   .+. ...|+..++.... ++.    -.+.+.+.|+.++.
T Consensus       481 i~~---~~r-~~~p~~~IiaRa~-~~~----~~~~L~~~Ga~~vv  516 (601)
T PRK03659        481 IVE---LCQ-QHFPHLHILARAR-GRV----EAHELLQAGVTQFS  516 (601)
T ss_pred             HHH---HHH-HHCCCCeEEEEeC-CHH----HHHHHHhCCCCEEE
Confidence            541   222 3344444443332 232    23455566776653

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=98.32  E-value=2e-05  Score=60.07  Aligned_cols=131  Identities=13%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCC-CeE-EEEcCChHHH-----HHHH---HcCCceecChhhhhcCCCEEEEeccCh
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSG-YKV-QAFEISDPLV-----DKFF---MLGGIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g-~~V-~~~d~~~~~~-----~~~~---~~g~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      |++||+|.|+ |+||+.+.+.+.+.. +++ -+++|.++..     ..+.   ..++...+++.....++|++|=-+. |
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~-P   79 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT-P   79 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC-c
Confidence            6889999998 999999999998765 554 5778776532     1121   2356666677777788999997665 3


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCH--hhHHHHHHHHH
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSI--DCFTYLFLVKN  140 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~--~~~~~~~~~~~  140 (173)
                      ..+...+    +.  .+..+ .++|-++..+++..+.+.+..+.  +..+-.+.|-+|-+-  ...+++.++|+
T Consensus        80 ~~~~~~l----~~--~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~  145 (266)
T COG0289          80 EATLENL----EF--ALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLD  145 (266)
T ss_pred             hhhHHHH----HH--HHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence            4444443    11  12233 46666666777878888887765  444444444443332  23344444444

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.32  E-value=6.1e-06  Score=64.55  Aligned_cols=90  Identities=16%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHH--HHHHHcCCce-ecChhhhhc-----CCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLV--DKFFMLGGIR-SASPMDAGK-----DVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~~dvii~~v~~~~~~   72 (173)
                      .||||||+|++|..++..+.+. +.++ .++|+++++.  +...+.|+.. ..+.+++++     +.|+|+.++|...+.
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~   84 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV   84 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence            5899999999999988877754 4566 4788887643  3445567765 467787774     588999999965544


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                      +...       ...+.|+.++|.+...
T Consensus        85 e~a~-------~a~eaGk~VID~sPA~  104 (302)
T PRK08300         85 RHAA-------KLREAGIRAIDLTPAA  104 (302)
T ss_pred             HHHH-------HHHHcCCeEEECCccc
Confidence            3332       3456788888887543

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.31  E-value=1.8e-06  Score=58.49  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             CeEEEEe----CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVG----LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG----~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||    -++.|..+.++|.++|++|+..+++.+.+     .|.....+..|.-...|++++++| +..+.+++  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v--   72 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIV--   72 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcC-HHHHHHHH--
Confidence            4799999    79999999999999999999998776432     266677788874478999999999 66677777  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM  122 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~  122 (173)
                       +++.+. ..+.+++..+    ...+++.+.++++|++++...+
T Consensus        73 -~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~C  110 (116)
T PF13380_consen   73 -DEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPNC  110 (116)
T ss_dssp             -HHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS-
T ss_pred             -HHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCCc
Confidence             344332 3445666555    3456778888889998876543

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.31  E-value=5.5e-06  Score=66.27  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=71.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC----------CCeE-EEEcCC----------hHHHHHHHHc-CC-c------eecC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS----------GYKV-QAFEIS----------DPLVDKFFML-GG-I------RSAS   51 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~----------g~~V-~~~d~~----------~~~~~~~~~~-g~-~------~~~~   51 (173)
                      |+.+|+++|+|.||+.+++.|.+.          +.+| .++|++          .+++..+.+. +. .      ...+
T Consensus         1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            788999999999999999998765          3454 466753          3333333322 21 1      1236


Q ss_pred             hhhhhc--CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCceee
Q 044797           52 PMDAGK--DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        52 ~~~~~~--~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~v  118 (173)
                      ..++++  +.|+|+.|+|+..+..+...  +-+...+..|+.++..+... .....++.+..+++|+.+.
T Consensus        81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~--~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~  148 (341)
T PRK06270         81 GLEVIRSVDADVVVEATPTNIETGEPAL--SHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR  148 (341)
T ss_pred             HHHHhhccCCCEEEECCcCcccccchHH--HHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence            677763  68999999985433211110  11245677899988764311 1234677777777777654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.31  E-value=3.5e-06  Score=62.01  Aligned_cols=91  Identities=13%  Similarity=-0.056  Sum_probs=64.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCc--e--ecC---hhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGI--R--SAS---PMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~--~~~---~~~~~~~~dvii~~v~~~   69 (173)
                      +++.++|. |.+|..+++.|.+.|++|++++|+.++.+.+.+.     +..  .  ..+   ..++++++|+||.++|.+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g  108 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG  108 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence            57999985 9999999999999999999999999888766542     211  1  112   236678999999999865


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                      .... .     ......+++.+++|.....
T Consensus       109 ~~~~-~-----~~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         109 VELL-E-----KLAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             ceec-h-----hhhcccCceeEEEEccCCC
Confidence            4311 1     1122344578899986543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.30  E-value=5.1e-06  Score=68.33  Aligned_cols=110  Identities=16%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--------C--CeE-EEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--------G--YKV-QAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--------g--~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      .||+++|+|.+|..+++.|.++        |  .++ .++|+++++.+.+...+...+++.+++++  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            6899999999999998877543        2  343 57799887654322223456678888885  479999998743


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcCCceee
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ....+.      +...++.|+.++.... ......+++.+..+++|+.+.
T Consensus        84 ~~~~~~------~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~  127 (426)
T PRK06349         84 EPAREL------ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY  127 (426)
T ss_pred             hHHHHH------HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence            222222      3356788999986543 112334677777777887654

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=98.29  E-value=5.9e-06  Score=66.09  Aligned_cols=89  Identities=12%  Similarity=0.004  Sum_probs=59.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-c------------------CCceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-L------------------GGIRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~------------------g~~~~~~~~~~~~~~d   60 (173)
                      |+||||+|+|+||..+++.+.++ ++++. ++|++++....+.. .                  ++....+..+++.++|
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            46999999999999999988764 46765 56766654443322 1                  2334456677778899


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +|+.|+|.... .+..      ..+++.|+.+|+.++
T Consensus        81 VVIdaT~~~~~-~e~a------~~~~~aGk~VI~~~~  110 (341)
T PRK04207         81 IVVDATPGGVG-AKNK------ELYEKAGVKAIFQGG  110 (341)
T ss_pred             EEEECCCchhh-HHHH------HHHHHCCCEEEEcCC
Confidence            99999985433 3332      234455677776655

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.29  E-value=2.3e-05  Score=62.05  Aligned_cols=65  Identities=20%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHH----c-----CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFM----L-----GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~----~-----g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|.+|+.++..|...|.  ++.++|++.++++....    .     ......+..+.+++||+||++.-
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            589999999999999999998886  89999998877643211    1     12223334456899999999764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=98.29  E-value=2.1e-05  Score=52.81  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=53.8

Q ss_pred             EEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec----Chh---h-hhcCCCEEEEeccChhhhhhh
Q 044797            5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA----SPM---D-AGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~----~~~---~-~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |-|+|+|.+|..+++.|.+.+.+|++.|+++++.+.+.+.+.....    +..   + -+++++.++++++++.....+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence            5689999999999999999777999999999999999988754321    111   1 256899999999866443333

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.28  E-value=7.9e-06  Score=68.23  Aligned_cols=92  Identities=16%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--c---------------C----------hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--A---------------S----------PMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~---------------~----------~~~~   55 (173)
                      .|+.|+|+|.+|...++.+...|..|+++|+++++.+.+...|....  +               +          ..+.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~  244 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ  244 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999888777665430  0               0          2344


Q ss_pred             hcCCCEEEEec--cChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           56 GKDVSALVVVI--SHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        56 ~~~~dvii~~v--~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+++|+||.++  |.... ..++.  ++..+.+++|.+|+|.+.
T Consensus       245 ~~~~DIVI~TalipG~~a-P~Lit--~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       245 AKEVDIIITTALIPGKPA-PKLIT--EEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             hCCCCEEEECcccCCCCC-Ceeeh--HHHHhhCCCCCEEEEeee
Confidence            67899999988  21111 11222  234578999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=98.28  E-value=8.2e-06  Score=67.37  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=54.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-cCCcee-------cChhhh-hcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-LGGIRS-------ASPMDA-GKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~-------~~~~~~-~~~~dvii~~v~~~~   70 (173)
                      |+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+ .+....       ....++ ++++|.++++++++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~   77 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE   77 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence            48999999999999999999999999999999999988866 443321       122333 678999999998643

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.26  E-value=1e-05  Score=60.71  Aligned_cols=109  Identities=16%  Similarity=0.070  Sum_probs=70.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh----------HHHHHHHHcC-Ccee-----cChhhh-hcCCCEEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD----------PLVDKFFMLG-GIRS-----ASPMDA-GKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~----------~~~~~~~~~g-~~~~-----~~~~~~-~~~~dvii~   64 (173)
                      ++|.|.|+|++|+.+++.|.+.|. .|.+.|.+.          +.++...+.+ +...     .+.++. -.+||+++.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip  103 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP  103 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence            689999999999999999999987 567889888          6666554442 2111     111222 237999999


Q ss_pred             eccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        65 ~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      |.+.+....+..       +.++ -++|+.. ...|-+. +..+.|+++|+.|+.+.
T Consensus       104 aA~~~~i~~~~a-------~~l~-a~~V~e~-AN~p~t~-~a~~~L~~~Gi~v~Pd~  150 (217)
T cd05211         104 CALGNVIDLENA-------KKLK-AKVVAEG-ANNPTTD-EALRILHERGIVVAPDI  150 (217)
T ss_pred             ccccCccChhhH-------hhcC-ccEEEeC-CCCCCCH-HHHHHHHHCCcEEEChH
Confidence            988553322222       2232 2344444 3334343 67788888999887653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.26  E-value=1.7e-06  Score=71.14  Aligned_cols=66  Identities=17%  Similarity=0.222  Sum_probs=51.1

Q ss_pred             CeEEEEeCChhhHHHHH--HH----HHCCCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEYSVDMAA--SL----IRSGYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~--~l----~~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~   64 (173)
                      +||+|||.|.||.+.+.  .+    ...|++|.+||+++++++....        .+    +..+++..+++++||+|++
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            48999999999998655  34    3457899999999988765432        11    2346677889999999999


Q ss_pred             eccC
Q 044797           65 VISH   68 (173)
Q Consensus        65 ~v~~   68 (173)
                      +++.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9983

linked to 3D####ucture

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.26  E-value=5.3e-06  Score=65.20  Aligned_cols=62  Identities=13%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             EEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHH----HHHc----C--Cc--eecChhhhhcCCCEEEEecc
Q 044797            5 VGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDK----FFML----G--GI--RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~~----g--~~--~~~~~~~~~~~~dvii~~v~   67 (173)
                      |+|||+|.||..++..++..|. +|+++|+++++.+.    +.+.    +  .+  .+.+. +.+++||+||++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999998876 99999999875432    1111    1  12  22343 55899999999873

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.26  E-value=1.8e-05  Score=58.78  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec-C-hhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA-S-PMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~-~-~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|||.|.+|...++.|.+.|++|++++++. +.+..+.+.+ +.... . ..+.+.++|+||.|+.++. +...+..
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-lN~~i~~   89 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-VNEQVKE   89 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH-HHHHHHH
Confidence            689999999999999999999999999998874 3334444433 22211 1 1334678999999998654 3332210


Q ss_pred             c--cc--------------hhh-cCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797           79 H--EG--------------VLK-GLQKGAVIILQST--ILPSHMQKLEKTFTG  112 (173)
Q Consensus        79 ~--~~--------------i~~-~l~~g~~ii~~st--~~~~~~~~l~~~l~~  112 (173)
                      .  ..              +.+ ....|.+.+.+||  .+|...+.+.+.+++
T Consensus        90 ~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~  142 (202)
T PRK06718         90 DLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEA  142 (202)
T ss_pred             HHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence            0  00              001 1234666665554  577777777777654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.25  E-value=3e-06  Score=57.77  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCC-Ce-EEEEcCChHHHHHHHHc-----C---CceecChhhhhcCCCEEEEeccChhhh
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSG-YK-VQAFEISDPLVDKFFML-----G---GIRSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g-~~-V~~~d~~~~~~~~~~~~-----g---~~~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      ||+|+| .|.+|..+.+.|.++- ++ +.++.++++.-+.+...     +   ....+...+.+.++|++|+|+|+ ...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~-~~~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH-GAS   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH-HHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch-hHH
Confidence            799999 9999999999999854 34 45566665222222221     1   22333334556899999999994 334


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .+..      ...+++|..++|.|+.
T Consensus        80 ~~~~------~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   80 KELA------PKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHH------HHHHHTTSEEEESSST
T ss_pred             HHHH------HHHhhCCcEEEeCCHH
Confidence            4443      1235778899999864

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=98.24  E-value=1e-05  Score=63.06  Aligned_cols=117  Identities=13%  Similarity=0.003  Sum_probs=74.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-C----Cceec---ChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-G----GIRSA---SPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~---~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      +++.|||+|.+|.+++..|...|. +|+++||++++.+.+.+. +    +....   +..+.+.++|+||.|+|......
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~  205 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPAD  205 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCC
Confidence            478999999999999999999996 699999999999887653 1    11111   22344578999999998543221


Q ss_pred             hhhcC-ccc--hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           74 DIFFG-HEG--VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        74 ~v~~~-~~~--i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ..... ...  ....++++..++|..-. |..+ .+.+..++.|...++.-
T Consensus       206 ~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~Gl  254 (282)
T TIGR01809       206 YVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVISGL  254 (282)
T ss_pred             HHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEECcH
Confidence            11000 000  00123467788888643 3332 34555666787766544

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.24  E-value=6e-06  Score=64.16  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|. +|.+++..|.+.|.+|+++++..              .++.+.++++|+||.+++.+.-    +.    
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~----i~----  216 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL----VT----  216 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc----cC----
Confidence            5899999998 99999999999999999998653              2466788999999999986432    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       217 -~~~vk~gavVIDvGi~  232 (286)
T PRK14175        217 -KDVVKEGAVIIDVGNT  232 (286)
T ss_pred             -HHHcCCCcEEEEcCCC
Confidence             1357899999999864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.23  E-value=6.8e-06  Score=59.21  Aligned_cols=93  Identities=15%  Similarity=0.057  Sum_probs=64.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec--------------------------Chhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA--------------------------SPMDAG   56 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--------------------------~~~~~~   56 (173)
                      .+|.|+|.|+.|...++.+...|++|+++|.++++.+.+...+.....                          ...+.+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i  100 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI  100 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence            589999999999999999999999999999999988877665432111                          123556


Q ss_pred             cCCCEEEEecc-ChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           57 KDVSALVVVIS-HVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        57 ~~~dvii~~v~-~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +.+|+||.+.- +......++.  ++..+.++++.+|+|.|.
T Consensus       101 ~~~d~vI~~~~~~~~~~P~lvt--~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen  101 APADIVIGNGLYWGKRAPRLVT--EEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HH-SEEEEHHHBTTSS---SBE--HHHHHTSSTTEEEEETTG
T ss_pred             hhCcEEeeecccCCCCCCEEEE--hHHhhccCCCceEEEEEe
Confidence            78999997542 2333333432  234567889999999964

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.22  E-value=9.3e-06  Score=67.92  Aligned_cols=93  Identities=14%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cC---------------h----------hhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--AS---------------P----------MDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~---------------~----------~~~   55 (173)
                      .||.|+|+|.+|...++.+...|.+|+++|+++++.+...+.|++..  +.               .          .+.
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~  245 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ  245 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999998888887622  11               0          111


Q ss_pred             hcCCCEEEEeccChhh-hhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           56 GKDVSALVVVISHVDQ-IDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~-~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+++|++|.|+..+.. ...++.  ++..+.+++|.+|+|.+.
T Consensus       246 ~~gaDVVIetag~pg~~aP~lit--~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        246 AKEVDIIITTALIPGKPAPKLIT--AEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             cCCCCEEEECCCCCcccCcchHH--HHHHHhcCCCCEEEEEcc
Confidence            2469999999864321 111211  234467889999998875

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.20  E-value=1.2e-05  Score=51.48  Aligned_cols=61  Identities=23%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++++|+|+|.+|..+++.+.+. +.++.+|||                          |++|.+++.+..+.+-      
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------   71 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------   71 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------
Confidence            5899999999999999999998 578999998                          9999999854433221      


Q ss_pred             hhhcCCCCCEEEEc
Q 044797           82 VLKGLQKGAVIILQ   95 (173)
Q Consensus        82 i~~~l~~g~~ii~~   95 (173)
                      ..+.+.++.+|++.
T Consensus        72 ~~~~~~~~~~v~~~   85 (86)
T cd05191          72 ATAKINEGAVVIDL   85 (86)
T ss_pred             HHHhcCCCCEEEec
Confidence            12346778888875

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=98.16  E-value=3.6e-05  Score=66.23  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=71.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec---Chhhh-----hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA---SPMDA-----GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---~~~~~-----~~~~dvii~~v~~~~~~~~   74 (173)
                      .+|-|+|+|++|+.+++.|.+.|+++++.|.|+++++.+++.|.....   +..+.     ++++|.+++++.+++....
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~  480 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ  480 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence            478899999999999999999999999999999999999887754311   11222     4579999999987665544


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +..    ......|+..++..+. ++..    ...+.+.|+.++
T Consensus       481 i~~----~ar~~~p~~~iiaRa~-d~~~----~~~L~~~Gad~v  515 (621)
T PRK03562        481 LVE----LVKEHFPHLQIIARAR-DVDH----YIRLRQAGVEKP  515 (621)
T ss_pred             HHH----HHHHhCCCCeEEEEEC-CHHH----HHHHHHCCCCEE
Confidence            441    2222334433333222 2332    344555677665

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.16  E-value=0.00012  Score=57.87  Aligned_cols=64  Identities=13%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHH----Hc----C---CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFF----ML----G---GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~----g---~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|.+|+.+|..|...|.  ++.++|+++++++...    +.    .   +....++++ +++||+||++.-
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG   80 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG   80 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence            699999999999999999988774  7999999887654321    11    1   122245554 899999999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.12  E-value=2e-05  Score=62.50  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c-C---hhhhh-cCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A-S---PMDAG-KDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~-~---~~~~~-~~~dvii~~v~~~~~~~~v~   76 (173)
                      .+|+|+|+|-+|+.-.|.....|.+|+++|+++++.+.+++.|+... + +   ..+.+ +.+|+++.+++ +..+...+
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l  246 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL  246 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH
Confidence            58999999999999999999999999999999999999888876422 1 1   11222 23999999999 77666555

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.11  E-value=1.5e-05  Score=62.64  Aligned_cols=91  Identities=20%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCCh------HHHHHHHH-c--------------CCceecChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISD------PLVDKFFM-L--------------GGIRSASPMD   54 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~------~~~~~~~~-~--------------g~~~~~~~~~   54 (173)
                      .||++||.|++|+++|+.+.+.-       .+|..|-+..      +++..... .              .+...+++.+
T Consensus        22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e  101 (372)
T KOG2711|consen   22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE  101 (372)
T ss_pred             eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence            58999999999999999886421       2576663321      22222111 0              1335678889


Q ss_pred             hhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           55 AGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        55 ~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++.++|+++..+| .+-+.+++   +++..+++++...|+.+-
T Consensus       102 a~~dADilvf~vP-hQf~~~ic---~~l~g~vk~~~~aISL~K  140 (372)
T KOG2711|consen  102 AAKDADILVFVVP-HQFIPRIC---EQLKGYVKPGATAISLIK  140 (372)
T ss_pred             HhccCCEEEEeCC-hhhHHHHH---HHHhcccCCCCeEEEeec
Confidence            9999999999999 46678888   678889999999998864

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.10  E-value=0.0001  Score=58.00  Aligned_cols=129  Identities=12%  Similarity=0.209  Sum_probs=77.2

Q ss_pred             EEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----c----C-Cce--ecChhhhhcCCCEEEEeccChhh
Q 044797            5 VGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM----L----G-GIR--SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~----~----g-~~~--~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |+|||+|.+|++++..++..|  .++.++|+++++++....    .    . .+.  ..+ .+.+++||+||++...+..
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            689999999999999999888  689999999887654322    1    0 111  233 4678999999999853321


Q ss_pred             ---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHH-HHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797           72 ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHM-QKLEKTFTGNLTFYILERMFLISSSIDCFTYL  135 (173)
Q Consensus        72 ---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~-~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~  135 (173)
                                     ++++.   +.+.++. |+..++..++  |.+. ..+....  .|  +-...++.++...+....-
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~---~~i~~~~-p~~~viv~sN--P~d~~~~~~~~~--sg--~~~~kviG~gt~lDs~r~~  149 (300)
T cd00300          80 PGETRLDLINRNAPILRSVI---TNLKKYG-PDAIILVVSN--PVDILTYVAQKL--SG--LPKNRVIGSGTLLDSARFR  149 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEccC--hHHHHHHHHHHH--hC--cCHHHEEecCCcHHHHHHH
Confidence                           12222   2344444 5556666553  4432 2222221  12  2223466677776655555


Q ss_pred             HHHHHhhCC
Q 044797          136 FLVKNEFFI  144 (173)
Q Consensus       136 ~~~~~~~g~  144 (173)
                      ..+-+.++.
T Consensus       150 ~~la~~l~v  158 (300)
T cd00300         150 SLLAEKLDV  158 (300)
T ss_pred             HHHHHHhCC
Confidence            555566654

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=98.08  E-value=9.1e-06  Score=54.93  Aligned_cols=103  Identities=12%  Similarity=0.079  Sum_probs=65.0

Q ss_pred             eCChhhHHHHHHHHHC----CCeE-EEEcCC--hHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797            9 GLDEYSVDMAASLIRS----GYKV-QAFEIS--DPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         9 G~G~mG~~ia~~l~~~----g~~V-~~~d~~--~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |+|.+|+.+++.|.+.    +.++ .+++|+  .+........+.....+.+++++  +.|+||-|.+ +..+.+.+   
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~---   76 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYY---   76 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHH---
Confidence            8999999999999876    4555 577888  11111111123466778888888  8999999976 44555544   


Q ss_pred             cchhhcCCCCCEEEEcCCCC---HHHHHHHHHHHhcCCceee
Q 044797           80 EGVLKGLQKGAVIILQSTIL---PSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~---~~~~~~l~~~l~~~g~~~v  118 (173)
                         .+.++.|..++..+...   +...+++.+..+++|.++.
T Consensus        77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~  115 (117)
T PF03447_consen   77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY  115 (117)
T ss_dssp             ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred             ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence               35677899999886532   2345677777777777653

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.06  E-value=1.8e-05  Score=63.46  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=57.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-c----CC---cee-cChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-L----GG---IRS-ASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~----g~---~~~-~~~~~~~~~~dvii~~v~~~~   70 (173)
                      +||+|+|+ |.+|..+++.|.++ ++++. +++++++.-+.+.+ .    +.   ... .+.+++.+++|++|+|+|+..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            48999998 99999999999976 56776 55654422222221 1    11   111 144555568999999999654


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      + .++.      ......|..+||.|+.
T Consensus        81 s-~~~~------~~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        81 S-AELA------PELLAAGVKVIDLSAD  101 (346)
T ss_pred             H-HHHH------HHHHhCCCEEEeCChh
Confidence            3 3333      1234578999999863

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=2.9e-05  Score=60.38  Aligned_cols=112  Identities=14%  Similarity=0.053  Sum_probs=76.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc----CCc-eecChhhh--hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML----GGI-RSASPMDA--GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~----g~~-~~~~~~~~--~~~~dvii~~v~~~~~~~~   74 (173)
                      .++.++|.|-.+.+++..|++.| .+++++||+.++.+++.+.    +.. ......+.  .+++|+||-++|-.-.-..
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~  206 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPE  206 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCC
Confidence            46899999999999999999999 4799999999999887653    211 11122222  2258999999985432221


Q ss_pred             ---hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           75 ---IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        75 ---v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                         .+    . ...++++.++.|.--....+  .+.+..++.|...++.-
T Consensus       207 ~~~~~----~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~idGl  249 (283)
T COG0169         207 GDSPV----P-AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTIDGL  249 (283)
T ss_pred             CCCCC----c-HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEECcH
Confidence               11    1 35678899999986654333  45566677787755543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.03  E-value=1.4e-05  Score=62.33  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCc--ee----cChhhhhcCCCEEEEec--cChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGI--RS----ASPMDAGKDVSALVVVI--SHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~--~~----~~~~~~~~~~dvii~~v--~~~~~~~   73 (173)
                      -||.|||.|.+|..-|+-..-.|.+|++.|+|.+++..+.+. +.+  ..    .+.++.+.++|++|-++  |... ..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak-aP  247 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK-AP  247 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC-Cc
Confidence            479999999999999999999999999999999999887764 322  22    23457788999999886  4222 22


Q ss_pred             hhhcCccchhhcCCCCCEEEEcC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .+..  ++..+.++||.+|+|..
T Consensus       248 kLvt--~e~vk~MkpGsVivDVA  268 (371)
T COG0686         248 KLVT--REMVKQMKPGSVIVDVA  268 (371)
T ss_pred             eehh--HHHHHhcCCCcEEEEEE
Confidence            2332  35678899999999985

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=2.8e-05  Score=60.38  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             CeEEEEeCChh-hHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEY-SVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~m-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|.. |.+++..|.+.|..|++++..              +.++.+.++++|+||++++.+.    .+.    
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~----~i~----  216 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRN----VLT----  216 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcC----ccC----
Confidence            57999999999 999999999999999988643              2356788899999999999543    221    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       217 -~~~ik~gavVIDVGin  232 (285)
T PRK14189        217 -ADMVKPGATVIDVGMN  232 (285)
T ss_pred             -HHHcCCCCEEEEcccc
Confidence             2568999999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=98.02  E-value=8.4e-05  Score=55.31  Aligned_cols=110  Identities=12%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-HHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-LVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|||.|.+|..-++.|++.|.+|++++++.. .++.+.+.+ +....  -..+.++++++||.++.++..-..+...
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~~   89 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAHA   89 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence            5899999999999999999999999999988753 445555543 32211  1134577899999998765322222210


Q ss_pred             ------------ccc----hh-hcCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797           79 ------------HEG----VL-KGLQKGAVIILQST--ILPSHMQKLEKTFTG  112 (173)
Q Consensus        79 ------------~~~----i~-~~l~~g~~ii~~st--~~~~~~~~l~~~l~~  112 (173)
                                  +.+    +. ..+..|.+.|.+||  .+|...+.+.+.+++
T Consensus        90 a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~  142 (205)
T TIGR01470        90 ARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET  142 (205)
T ss_pred             HHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence                        000    00 11334667765555  478777777777754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=98.01  E-value=7.2e-05  Score=52.27  Aligned_cols=111  Identities=14%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQI   72 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~~   72 (173)
                      ||.++|+|.+|+.++++|...|. +++++|.+.-....+..        .|-..+....+.++  +.++-+...+.... 
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~-   79 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS-   79 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC-
Confidence            68999999999999999999997 69999876432222211        12111212222221  23444444432111 


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM  122 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~  122 (173)
                       ..     .....+.+-+++++++.. +.....+.+.++++++.++..++
T Consensus        80 -~~-----~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~  122 (143)
T cd01483          80 -ED-----NLDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGG  122 (143)
T ss_pred             -hh-----hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcC
Confidence             10     012345667788888765 55667788888888998887653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.00  E-value=2.7e-05  Score=61.47  Aligned_cols=64  Identities=11%  Similarity=0.146  Sum_probs=46.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCCh--HHHHH----HHH----cC--Cce--ecChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISD--PLVDK----FFM----LG--GIR--SASPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~--~~~~~----~~~----~g--~~~--~~~~~~~~~~~dvii~~   65 (173)
                      |||+|+|+ |.+|..++..|...|+  +|+++|+++  ++++.    +.+    .+  ...  ..+. +.++++|+||++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            59999998 9999999999999986  499999954  44321    111    12  122  2343 458999999999


Q ss_pred             cc
Q 044797           66 IS   67 (173)
Q Consensus        66 v~   67 (173)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            85

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=98.00  E-value=7.4e-05  Score=53.28  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=46.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-Cceec-Ch-hhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-GIRSA-SP-MDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~~~-~~-~~~~~~~dvii~~v~~~~   70 (173)
                      ++|.|||.|.+|...++.|.+.|++|+++++.  ..+.+.+.+ +.... .+ ++-++++|+|+.++.++.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e   82 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA   82 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence            58999999999999999999999999999644  333443332 22111 11 223678899999987543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.97  E-value=7.6e-05  Score=55.32  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~   34 (173)
                      .||+|+|+|.+|+.++..|.+.|+ +++++|++
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            689999999999999999999998 69999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.95  E-value=4.7e-05  Score=54.97  Aligned_cols=62  Identities=21%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             EEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEeccC
Q 044797            5 VGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         5 IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~~   68 (173)
                      |.|+|+ |.+|..+++.|++.|++|++.-|++++.+.  ..+++.       ..+..++++++|.|+.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            678885 999999999999999999999999998876  333321       12345678899999999974

...

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.91  E-value=8.3e-05  Score=53.09  Aligned_cols=74  Identities=19%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.+||-+. +|.+++..|.+.|..|++++.+.              .+.++.++.+|+||+++..+..++        
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~--------   94 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIK--------   94 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B---------
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccccc--------
Confidence            5889999885 99999999999999999987653              356677889999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCCC
Q 044797           82 VLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~   99 (173)
                       ...+++|.++||.+...
T Consensus        95 -~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   95 -ADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             -GGGS-TTEEEEE--CEE
T ss_pred             -cccccCCcEEEecCCcc
Confidence             24578999999997653

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.91  E-value=0.00011  Score=60.96  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=74.2

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      ++|+|||.    |++|..+.++|.+.|+  +|+..|++.+.+     .|.....+.+++-+..|++++++| +..+.+++
T Consensus         8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~~l   81 (447)
T TIGR02717         8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQVV   81 (447)
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecC-HHHHHHHH
Confidence            58999999    8899999999999998  576666654321     367777888888788999999999 56667776


Q ss_pred             cCccchhhcCCCCCEEEEcCCCC------HHHHHHHHHHHhcCCceeeec
Q 044797           77 FGHEGVLKGLQKGAVIILQSTIL------PSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~------~~~~~~l~~~l~~~g~~~v~~  120 (173)
                         +++.+. .-..+++-++...      ....+++.+..+++|++++..
T Consensus        82 ---~e~~~~-gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP  127 (447)
T TIGR02717        82 ---EECGEK-GVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGP  127 (447)
T ss_pred             ---HHHHhc-CCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence               334332 2223333222111      122467777778888887654

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.91  E-value=3.6e-05  Score=61.45  Aligned_cols=112  Identities=20%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHH--------CCC--eE-EEEcCChH----------HHHHHHHc-CC--ce-------e
Q 044797            1 MASKVGFVGLDEYSVDMAASLIR--------SGY--KV-QAFEISDP----------LVDKFFML-GG--IR-------S   49 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~--------~g~--~V-~~~d~~~~----------~~~~~~~~-g~--~~-------~   49 (173)
                      |+.+|+++|+|++|+.+++.|.+        .|.  +| .+.|++..          ++....+. +.  ..       .
T Consensus         1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            78899999999999999988866        463  33 34464421          11111111 10  01       1


Q ss_pred             cChhhhh--cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceeee
Q 044797           50 ASPMDAG--KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        50 ~~~~~~~--~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v~  119 (173)
                      .+..+.+  .++|++|-++.. ....++.      ...+..|..++..+.... ...+++.+..++++..+.-
T Consensus        81 ~~~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~  146 (336)
T PRK08374         81 FSPEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF  146 (336)
T ss_pred             CCHHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE
Confidence            1456666  479999999864 3344443      355778888987765311 2345666666667776653

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.90  E-value=7.6e-05  Score=58.42  Aligned_cols=114  Identities=12%  Similarity=-0.045  Sum_probs=72.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCCh---HHHHHHHH----cC--Cce--e--c---ChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISD---PLVDKFFM----LG--GIR--S--A---SPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~---~~~~~~~~----~g--~~~--~--~---~~~~~~~~~dvii~~   65 (173)
                      +++.|+|+|.+|.+++..|...|.+ |++++|++   ++.+.+.+    .+  +..  .  +   +..+.++.+|+||.+
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa  206 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA  206 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence            4678899999999999999999986 99999997   56555433    11  111  1  1   122345678999999


Q ss_pred             ccChhh--hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           66 ISHVDQ--IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        66 v~~~~~--~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      +|-.-.  ......   .-...+.++.++.|..-.... + .+.+..++.|.+.++.-
T Consensus       207 Tp~Gm~~~~~~~~~---~~~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~G~  259 (289)
T PRK12548        207 TLVGMKPNDGETNI---KDTSVFRKDLVVADTVYNPKK-T-KLLEDAEAAGCKTVGGL  259 (289)
T ss_pred             CCCCCCCCCCCCCC---CcHHhcCCCCEEEEecCCCCC-C-HHHHHHHHCCCeeeCcH
Confidence            984321  111110   012346778899999764333 2 45555666787766544

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=8.6e-05  Score=57.88  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|+|.|. .|.+++..|.+.|.+|+++++..              .++.+.++++|+||.+++.+.    .+.    
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v~----  217 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LIK----  217 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cCC----
Confidence            5899999998 99999999999999999999732              234555689999999996433    221    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|.+++|....
T Consensus       218 -~~~lk~gavViDvg~n  233 (283)
T PRK14192        218 -KDWIKQGAVVVDAGFH  233 (283)
T ss_pred             -HHHcCCCCEEEEEEEe
Confidence             2457899999998753

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.89  E-value=7.3e-05  Score=49.72  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHCCCeEEEEcCChHHHHHHH---HcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCC
Q 044797           13 YSVDMAASLIRSGYKVQAFEISDPLVDKFF---MLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKG   89 (173)
Q Consensus        13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g   89 (173)
                      -+..+++.|.+.|.+|.+||+.-.......   ..+++..+++.++++++|.||++++.+. .+..-.  +++...+.++
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~--~~~~~~~~~~   94 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDW--EEIAKLMRKP   94 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGH--HHHHHHSCSS
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCH--HHHHHhcCCC
Confidence            356788999999999999999866655444   2467888889999999999999999654 444211  3566667788


Q ss_pred             CEEEEcCC
Q 044797           90 AVIILQST   97 (173)
Q Consensus        90 ~~ii~~st   97 (173)
                      .+|+|+-.
T Consensus        95 ~~iiD~~~  102 (106)
T PF03720_consen   95 PVIIDGRN  102 (106)
T ss_dssp             EEEEESSS
T ss_pred             CEEEECcc
Confidence            99999854

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.89  E-value=6.4e-05  Score=59.93  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHC-C-CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRS-G-YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|+|+ |.||+.+++.|... | .++++++|+++++..+... +.....+..+++.++|+|+.++..+..+  ++ .
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I-~  232 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EI-D  232 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cC-C
Confidence            57999998 89999999999854 5 5899999998888776553 2112235678888999999988643321  12 1


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                          .+.++++.+++|.+-  |.+.+.   ...+.++.+++.+
T Consensus       233 ----~~~l~~~~~viDiAv--PRDVd~---~v~~~~V~v~~gG  266 (340)
T PRK14982        233 ----PETLKKPCLMIDGGY--PKNLDT---KVQGPGIHVLKGG  266 (340)
T ss_pred             ----HHHhCCCeEEEEecC--CCCCCc---ccCCCCEEEEeCC
Confidence                134578899999873  443332   1223677776654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=7.7e-05  Score=57.95  Aligned_cols=73  Identities=18%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-+. +|.+++..|.+.|..|+++++.              +.++.+.++.+|+||.++..+..+.        
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~--------  217 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP--------  217 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc--------
Confidence            5899999999 9999999999999999999754              2357788899999999997544322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       218 -~~~vk~gavVIDvGin  233 (285)
T PRK10792        218 -GEWIKPGAIVIDVGIN  233 (285)
T ss_pred             -HHHcCCCcEEEEcccc
Confidence             2567899999999754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.88  E-value=0.00031  Score=58.03  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--CCcee----cChh----hhhcCCCEEEEeccCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--GGIRS----ASPM----DAGKDVSALVVVISHV   69 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~~----~~~~----~~~~~~dvii~~v~~~   69 (173)
                      +++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.  +....    .+.+    .-++++|.++++++++
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            3689999999999999999999999999999999998887764  33221    1222    1245799999888854

>PRK15076 alpha-galactosidase; Provisional

Probab=97.87  E-value=3.4e-05  Score=63.54  Aligned_cols=67  Identities=12%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             CCeEEEEeCChhhHHHHH--HHH----HCCCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797            2 ASKVGFVGLDEYSVDMAA--SLI----RSGYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~--~l~----~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii   63 (173)
                      |+||+|||+|.||...+.  .++    -.+.+|+++|+++++.+....        .+    +..+.+..+++++||+|+
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv   80 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI   80 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence            379999999999966554  443    235689999999988763211        12    234567788999999999


Q ss_pred             EeccC
Q 044797           64 VVISH   68 (173)
Q Consensus        64 ~~v~~   68 (173)
                      ++...
T Consensus        81 ~ti~v   85 (431)
T PRK15076         81 NAIQV   85 (431)
T ss_pred             Eeeee
Confidence            99754

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.86  E-value=5.9e-05  Score=61.19  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcC-------CceecChh-hhhcCCCEEEEeccChh
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLG-------GIRSASPM-DAGKDVSALVVVISHVD   70 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~-~~~~~~dvii~~v~~~~   70 (173)
                      |++||+|+|+ |..|..+.+.|.++ .++++.+.++.+.-+.+....       .....+.+ +.++++|++|+|+|+. 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence            4679999976 99999999999988 678887766543322222111       11111222 2257899999999954 


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ...++.       +.+..|..+||.|+-
T Consensus       116 ~s~~i~-------~~~~~g~~VIDlSs~  136 (381)
T PLN02968        116 TTQEII-------KALPKDLKIVDLSAD  136 (381)
T ss_pred             HHHHHH-------HHHhCCCEEEEcCch
Confidence            334443       234568899999863

>PLN02602 lactate dehydrogenase

Probab=97.85  E-value=0.00067  Score=54.50  Aligned_cols=64  Identities=9%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHH----Hc----C-Ccee--cChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFF----ML----G-GIRS--ASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~----g-~~~~--~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|++|+.+|..+...+.  ++.++|+++++++...    +.    + ....  .++ +.+++||+||++.-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCC
Confidence            599999999999999999988774  7999999887654321    10    1 2222  233 44889999999853

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.85  E-value=0.00014  Score=54.98  Aligned_cols=88  Identities=11%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCC----hHHH-------HHHHHc-CC-ceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFEIS----DPLV-------DKFFML-GG-IRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~----~~~~-------~~~~~~-g~-~~~~~~~~~~~~~dvii~~v   66 (173)
                      +||.|+|+|.+|..++..|...|.   +++++||+    .++.       +.+.+. +. ....++.+.++++|++|-++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT  105 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS  105 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence            589999999999999999999996   59999998    4442       222221 11 11125667788899999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      + +..+..      +..+.+.++.++.+.++
T Consensus       106 ~-~G~~~~------~~l~~m~~~~ivf~lsn  129 (226)
T cd05311         106 R-PGVVKK------EMIKKMAKDPIVFALAN  129 (226)
T ss_pred             C-CCCCCH------HHHHhhCCCCEEEEeCC
Confidence            7 332221      23344556777777763

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.84  E-value=9e-05  Score=57.81  Aligned_cols=113  Identities=14%  Similarity=0.039  Sum_probs=73.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-----CC--ceecCh---hhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-----GG--IRSASP---MDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g~--~~~~~~---~~~~~~~dvii~~v~~~~~   71 (173)
                      +++.++|+|-.|.+++..|.+.|. +++++||++++.+.+.+.     +.  ....+.   .+....+|+||-++|-.-.
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~  207 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP  207 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence            468899999999999999999996 799999999998887542     11  111121   2345679999999984321


Q ss_pred             hh-hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 ID-DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~-~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      -. ....   . ...+.++..+.|..-... .+ .+.+..++.|.+.++.-
T Consensus       208 ~~~~~~~---~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~Gl  252 (283)
T PRK14027        208 AHPGTAF---D-VSCLTKDHWVGDVVYMPI-ET-ELLKAARALGCETLDGT  252 (283)
T ss_pred             CCCCCCC---C-HHHcCCCcEEEEcccCCC-CC-HHHHHHHHCCCEEEccH
Confidence            00 0000   0 134667788889865432 22 34555666787766544

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.83  E-value=5.1e-05  Score=62.29  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=46.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      .+|.|||+|.+|.++|+.|.+.|++|+++|++++..+.....+-....+.....+++|++|.+.+.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi   69 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGI   69 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCC
Confidence            589999999999999999999999999999887643321111001112333444678988888653

>PLN02477 glutamate dehydrogenase

Probab=97.82  E-value=0.00016  Score=59.07  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=68.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCC----------hHHHHHHHHc--------CCceecChhhh-hcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEIS----------DPLVDKFFML--------GGIRSASPMDA-GKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~~dvi   62 (173)
                      ++|+|.|+|++|+..++.|.+.|.+|+ +.|.+          .+.+.+..+.        +.+.. +.+++ ..+||++
T Consensus       207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl  285 (410)
T PLN02477        207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL  285 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence            589999999999999999999999887 77776          5555333222        11222 22333 3479999


Q ss_pred             EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +-|.-.+....+..       +.+ .=++|+...+ .|- +.+..+.|+++|+.|+.+
T Consensus       286 iP~Al~~~I~~~na-------~~i-~ak~I~egAN-~p~-t~ea~~~L~~rGI~~~PD  333 (410)
T PLN02477        286 IPAALGGVINKENA-------ADV-KAKFIVEAAN-HPT-DPEADEILRKKGVVVLPD  333 (410)
T ss_pred             eeccccccCCHhHH-------HHc-CCcEEEeCCC-CCC-CHHHHHHHHHCCcEEECh
Confidence            88865333222222       223 2234444444 444 456778889999998765

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.81  E-value=7.7e-05  Score=58.87  Aligned_cols=65  Identities=12%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |||.|.| .|.+|+.+++.|+++|++|++..|++++...+...+++.       ..+..++++++|+||.+..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4899997 699999999999999999999999987765554444432       1234567889999998764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.81  E-value=4.4e-05  Score=55.30  Aligned_cols=65  Identities=11%  Similarity=0.073  Sum_probs=50.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+||| .|+.|+.+++-..++||+|+++-||+++.......     .+--.++..+.+.+-|+||.+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence            6999997 69999999999999999999999999998654221     11112234567788999999874

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.81  E-value=0.00017  Score=59.54  Aligned_cols=110  Identities=10%  Similarity=0.073  Sum_probs=70.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEE-c----------CChHHHHHHHHc------------CCceecChhhhh-cC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF-E----------ISDPLVDKFFML------------GGIRSASPMDAG-KD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~-d----------~~~~~~~~~~~~------------g~~~~~~~~~~~-~~   58 (173)
                      ++|+|.|.|++|+..|+.|.+.|.+|++. |          .+.+.+.+..+.            +.+.. +.++.. .+
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~d  311 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSVP  311 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccccC
Confidence            68999999999999999999999998765 7          566654433321            11111 233333 37


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      ||+++-|...+....+..   ..+.   .++..+|-.++..|. +.+..+.|.++|+.|+.+
T Consensus       312 ~DVliPaAl~n~It~~~a---~~i~---~~~akiIvEgAN~p~-t~~A~~~L~~rGI~~vPD  366 (445)
T PRK09414        312 CDIALPCATQNELDEEDA---KTLI---ANGVKAVAEGANMPS-TPEAIEVFLEAGVLFAPG  366 (445)
T ss_pred             CcEEEecCCcCcCCHHHH---HHHH---HcCCeEEEcCCCCCC-CHHHHHHHHHCCcEEECc
Confidence            999999987544333332   1221   234445555444554 456778888999998764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.78  E-value=0.00039  Score=58.31  Aligned_cols=64  Identities=14%  Similarity=0.055  Sum_probs=51.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec--ChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA--SPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--~~~~~~~~~dvii~~v   66 (173)
                      .+|.|+|+|..|.+.++.|...|++|+++|+++++.+.+.+.|+....  ...+.++++|+||.+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp   78 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP   78 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence            589999999999999999999999999999887776666666765432  2335567889888875

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.77  E-value=0.00022  Score=55.82  Aligned_cols=117  Identities=14%  Similarity=0.030  Sum_probs=74.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh---HHHHHHHHc-C----C-ceecCh------hhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD---PLVDKFFML-G----G-IRSASP------MDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~---~~~~~~~~~-g----~-~~~~~~------~~~~~~~dvii~~v   66 (173)
                      +++.|+|+|..+.+++..|...|. +|+++||++   ++.+.+.+. +    . ....+.      .+.+.++|+||.++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaT  204 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT  204 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECC
Confidence            478899999999999999999885 799999995   466666542 1    1 111222      22456789999999


Q ss_pred             cChhh--hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeee
Q 044797           67 SHVDQ--IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFL  124 (173)
Q Consensus        67 ~~~~~--~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~  124 (173)
                      |-.-.  .......   -...++++.++.|.--. |..+ .+.+..+++|.+.++..-++
T Consensus       205 p~Gm~~~~~~~~~~---~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~Gl~ML  259 (288)
T PRK12749        205 KVGMKPLENESLVN---DISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTIDGYGML  259 (288)
T ss_pred             CCCCCCCCCCCCCC---cHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEECCHHHH
Confidence            84321  1111100   11346778889998754 3333 45566667888776654333

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.77  E-value=0.00031  Score=54.50  Aligned_cols=113  Identities=13%  Similarity=0.020  Sum_probs=73.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhh-hhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQI-DDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~-~~v~~~~   79 (173)
                      .++.++|+|..+.+++..|.+.|. +|+++||++++.+.+.+. +.......  ....+|+||-|+|-.-.- .+.-.  
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~~--  198 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEADK--  198 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCcccc--
Confidence            368899999999999999999996 599999999999887653 22111111  124589999999843110 00000  


Q ss_pred             cch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           80 EGV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        80 ~~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ..+ ...++++.++.|..-... .+ .+.+..++.|...++.-
T Consensus       199 ~pi~~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~Gl  239 (272)
T PRK12550        199 LAFPEAEIDAASVVFDVVALPA-ET-PLIRYARARGKTVITGA  239 (272)
T ss_pred             CCCCHHHcCCCCEEEEeecCCc-cC-HHHHHHHHCcCeEeCCH
Confidence            001 134677889999866433 32 35555667788766543

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.75  E-value=0.00044  Score=57.49  Aligned_cols=113  Identities=17%  Similarity=0.234  Sum_probs=69.6

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceec-ChhhhhcCCCEEEEec--cC-hhhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSA-SPMDAGKDVSALVVVI--SH-VDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v--~~-~~~~~~v~   76 (173)
                      ++|.|+|+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||.+-  |. .+.+....
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~   87 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR   87 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence            58999999999999 79999999999999997643 33456666766532 2334566899888763  32 12232221


Q ss_pred             c------CccchhhcC-CCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797           77 F------GHEGVLKGL-QKGAVI-ILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        77 ~------~~~~i~~~l-~~g~~i-i~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .      .+.++...+ ++.++| |.-|.++..++.-+...|+..|.
T Consensus        88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            1      111232222 233445 34455666566677777776663

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00014  Score=56.48  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-| .+|.+++..|.+.|..|++++...              .++.+.+++||+||+++..+.-+.        
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~--------  215 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIK--------  215 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCC--------
Confidence            589999999 999999999999999999986432              234577889999999998554321        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|++++|.+..
T Consensus       216 -~~~vk~GavVIDvGi~  231 (285)
T PRK14191        216 -ASMVKKGAVVVDIGIN  231 (285)
T ss_pred             -HHHcCCCcEEEEeecc
Confidence             2457899999999754

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.73  E-value=0.00057  Score=56.81  Aligned_cols=63  Identities=21%  Similarity=0.277  Sum_probs=48.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceec--ChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSA--SPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~--~~~~~~~~~dvii~~   65 (173)
                      +||+|+|.|..|.++|+.|.+.|++|+++|+++.     ..+.+.+.|+....  ...+.+.++|+||.+
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S   84 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT   84 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence            5899999999999999999999999999998652     22346666765432  223546789998887

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.00018  Score=55.98  Aligned_cols=73  Identities=22%  Similarity=0.189  Sum_probs=58.5

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-++ +|.+++..|.+.|..|++++..              +.++.+..+++|+||.++.-|.-+.        
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~--------  222 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIK--------  222 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccC--------
Confidence            5799999999 9999999999999999999843              2356777899999999987544221        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       223 -~~~vk~gavVIDvGin  238 (287)
T PRK14176        223 -ADMVKEGAVIFDVGIT  238 (287)
T ss_pred             -HHHcCCCcEEEEeccc
Confidence             2357899999999764

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.71  E-value=0.0005  Score=52.72  Aligned_cols=110  Identities=11%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHH---HH-cC------------CceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKF---FM-LG------------GIRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~---~~-~g------------~~~~~~~~~~   55 (173)
                      .||.|.|+|++|+..++.|.+.|.+|+ +.|.          +.+.++.+   .+ .+            .+.. +.++.
T Consensus        39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~  117 (254)
T cd05313          39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP  117 (254)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence            589999999999999999999999887 6662          22333221   11 11            2222 23333


Q ss_pred             -hcCCCEEEEeccChhhhhhhhcCccchhhcC-CCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           56 -GKDVSALVVVISHVDQIDDIFFGHEGVLKGL-QKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        56 -~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l-~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       ..+||+.+-|--.+....+..       +.+ .++..+|-.+...|-+. +..+.|.++|+.|+.+.
T Consensus       118 ~~~~~DIliPcAl~~~I~~~na-------~~i~~~~ak~I~EgAN~p~t~-~a~~~L~~rGI~vvPD~  177 (254)
T cd05313         118 WEVPCDIAFPCATQNEVDAEDA-------KLLVKNGCKYVAEGANMPCTA-EAIEVFRQAGVLFAPGK  177 (254)
T ss_pred             hcCCCcEEEeccccccCCHHHH-------HHHHHcCCEEEEeCCCCCCCH-HHHHHHHHCCcEEECch
Confidence             347999998865333222222       122 22444555544455544 67788999999987653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=97.70  E-value=0.00033  Score=53.01  Aligned_cols=84  Identities=12%  Similarity=-0.000  Sum_probs=61.7

Q ss_pred             EEEEcCChHHHHHHHHc-CCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC---CHHH
Q 044797           28 VQAFEISDPLVDKFFML-GGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI---LPSH  102 (173)
Q Consensus        28 V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~---~~~~  102 (173)
                      +.+||+++++.+.+.+. |+...++.++++ .+.|+|++|+|...+.+...       +.++.|+.++-.+.+   +.+.
T Consensus         5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~   77 (229)
T TIGR03855         5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL   77 (229)
T ss_pred             EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence            46899999998887664 777888899886 57999999999655543332       456677766666553   4566


Q ss_pred             HHHHHHHHhcCCceee
Q 044797          103 MQKLEKTFTGNLTFYI  118 (173)
Q Consensus       103 ~~~l~~~l~~~g~~~v  118 (173)
                      .+++.+..++.|.++.
T Consensus        78 ~~~l~~aA~~~g~~l~   93 (229)
T TIGR03855        78 RERLREVARSSGRKVY   93 (229)
T ss_pred             HHHHHHHHHhcCCEEE
Confidence            7888888888887653

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.70  E-value=0.00032  Score=58.27  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~   65 (173)
                      +||.|+|+|..|.+.|+.|.+.|++|+++|+.+.....+...|+.......+.+.++|+||.+
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s   72 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS   72 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence            479999999999999999999999999999876555455555765432222335678988864

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.68  E-value=0.00016  Score=57.01  Aligned_cols=64  Identities=13%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHH-c------CCceecChhhhhcCCCEEEEecc
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFM-L------GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~-~------g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ||+|||+|.+|+.+|..|...+.  ++.++|+++++++.    +.+ .      ..+...+..+.+++||+||++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            79999999999999999988875  79999998776532    111 0      11222334567899999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.67  E-value=0.0006  Score=56.21  Aligned_cols=110  Identities=14%  Similarity=0.171  Sum_probs=67.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEE--------Ec---CChHHHHHH---HHc-------------CCceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQA--------FE---ISDPLVDKF---FML-------------GGIRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~--------~d---~~~~~~~~~---~~~-------------g~~~~~~~~~~   55 (173)
                      .+|+|-|+|++|+..|+.|.+.|.+|++        ||   .+.++++.+   .+.             +.+..+ .++.
T Consensus       229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~  307 (445)
T PRK14030        229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKP  307 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-Cccc
Confidence            5899999999999999999999999988        88   566653222   111             222222 2333


Q ss_pred             -hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCC-EEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           56 -GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGA-VIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        56 -~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~-~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       ..+||+.+-|.-.+....+..   +.+   .+.+. +|+...+. |. +.+..+.|.++|+.|+.+.
T Consensus       308 ~~~~cDVliPcAl~n~I~~~na---~~l---~~~~ak~V~EgAN~-p~-t~eA~~iL~~rGI~~vPD~  367 (445)
T PRK14030        308 WEQKVDIALPCATQNELNGEDA---DKL---IKNGVLCVAEVSNM-GC-TAEAIDKFIAAKQLFAPGK  367 (445)
T ss_pred             eeccccEEeeccccccCCHHHH---HHH---HHcCCeEEEeCCCC-CC-CHHHHHHHHHCCCEEeCcc
Confidence             346898888765333222222   112   12234 44444444 53 4456788889999987653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.67  E-value=0.0011  Score=54.82  Aligned_cols=113  Identities=12%  Similarity=0.054  Sum_probs=66.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH----HHHHHHHcCCcee--cChhhhhcC-CCEEEEec--cC-hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP----LVDKFFMLGGIRS--ASPMDAGKD-VSALVVVI--SH-VDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~--~~~~~~~~~-~dvii~~v--~~-~~~~   72 (173)
                      +++.|+|.|.+|.++|+.|++.|++|+++|++..    ..+.+.+.|+...  ....+.... .|+||...  |. .+.+
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~   85 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMV   85 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHH
Confidence            5789999999999999999999999999998652    2244555576543  233444444 89887764  32 2222


Q ss_pred             hhhhc------CccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797           73 DDIFF------GHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        73 ~~v~~------~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .....      .+.++...+.+..+| |.-|.++..++.-+...|+..|.
T Consensus        86 ~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~  135 (447)
T PRK02472         86 EKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQ  135 (447)
T ss_pred             HHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence            22211      011222222233444 34344555555666667765543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.67  E-value=0.0005  Score=55.24  Aligned_cols=88  Identities=14%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             eEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHH-cCCceecChh---------hhh--cCCCEEEEeccChh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFM-LGGIRSASPM---------DAG--KDVSALVVVISHVD   70 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~~~~~~~---------~~~--~~~dvii~~v~~~~   70 (173)
                      ++.|+|+|.+|...++.+...| .+|++.|+++++++.+++ .+.....+..         +..  ..+|++|.|+..+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~  250 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP  250 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence            6899999999999988888888 478888999999998887 4544333221         112  25999999998655


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .+.+.+       +.++++-.++..+..
T Consensus       251 ~~~~ai-------~~~r~gG~v~~vGv~  271 (350)
T COG1063         251 ALDQAL-------EALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHHHH-------HHhcCCCEEEEEecc
Confidence            444443       456777666666544

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.66  E-value=0.00077  Score=55.74  Aligned_cols=65  Identities=23%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHH----HHHHHcCCce--ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLV----DKFFMLGGIR--SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~----~~~~~~g~~~--~~~~~~~~~~~dvii~~v~   67 (173)
                      +++.|+|.|.+|.++|+.|++.|++|+++|+++ +..    +.+.+.|+..  .+...+...++|+||.+.-
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g   77 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG   77 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence            689999999999999999999999999999985 333    3333445443  2223344567999998763

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.65  E-value=0.00072  Score=56.47  Aligned_cols=63  Identities=19%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-HHcCCceec--ChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-FMLGGIRSA--SPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~--~~~~~~~~~dvii~~   65 (173)
                      +||.|+|+|..|.++++.|.+.|++|+++|+++....++ .+.|+....  ...+.++++|+||.+
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S   81 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS   81 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence            679999999999999999999999999999887655443 334765532  233456788988876

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.64  E-value=0.00026  Score=56.26  Aligned_cols=113  Identities=10%  Similarity=0.032  Sum_probs=66.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC------C--CeE-EEEcCChHHH-------HHH---HHcC-C--ceec--Chhhhh-c
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS------G--YKV-QAFEISDPLV-------DKF---FMLG-G--IRSA--SPMDAG-K   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~------g--~~V-~~~d~~~~~~-------~~~---~~~g-~--~~~~--~~~~~~-~   57 (173)
                      |||+++|+|++|+.+++.|.+.      |  .+| .++|++....       +.+   .+.+ .  ....  +..++. .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            4899999999999999998773      3  443 4567653211       111   1111 1  1111  344443 4


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceee
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v  118 (173)
                      ++|++|-|+|....-....   .-+.+.++.|..++..+-... ....++.+..++++.++.
T Consensus        81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~  139 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR  139 (326)
T ss_pred             CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence            6899999997432101111   123466788999997764221 224667777777777664

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.63  E-value=0.00039  Score=50.40  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      ||.|+|+|.+|+.+++.|.+.|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            68999999999999999999997 599999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.63  E-value=0.00022  Score=53.66  Aligned_cols=64  Identities=20%  Similarity=0.239  Sum_probs=51.2

Q ss_pred             EEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChH--HHHHHHHcCCcee-------cChhhhhcCCCEEEEeccC
Q 044797            5 VGFVGL-DEYSVDMAASLIRSGYKVQAFEISDP--LVDKFFMLGGIRS-------ASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         5 IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~-------~~~~~~~~~~dvii~~v~~   68 (173)
                      |.|+|. |.+|..+++.|.+.+++|.+.-|++.  ..+.+.+.|++..       +++.++++++|.||++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            678875 99999999999999999999988864  4566777776532       2345678999999999983

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.62  E-value=0.0016  Score=54.72  Aligned_cols=63  Identities=14%  Similarity=0.077  Sum_probs=46.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH--HHHHHHHc--CCceec--ChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP--LVDKFFML--GGIRSA--SPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~--g~~~~~--~~~~~~~~~dvii~~   65 (173)
                      ++|.|+|+|..|.++|+.|.+.|++|+++|.+..  ..+.+.+.  |+....  ...+.+.++|+||..
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s   76 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS   76 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence            4799999999999999999999999999997542  33445554  333322  234556789988886

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.62  E-value=0.00025  Score=56.97  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=55.8

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----c-----------CCceecChhhhhcCCCEEE
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM----L-----------GGIRSASPMDAGKDVSALV   63 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----~-----------g~~~~~~~~~~~~~~dvii   63 (173)
                      |++||+|+| .|.+|..+.+.|.++.. ++..+.+++++..+...    .           .........+.++++|+|+
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~DvVf   81 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVDIVF   81 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCCEEE
Confidence            458999997 89999999999987654 77777555443321111    0           0111111223447899999


Q ss_pred             EeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .|+|... ..++.   +   .....|..+||.|.
T Consensus        82 ~a~p~~~-s~~~~---~---~~~~~G~~vIDls~  108 (349)
T PRK08664         82 SALPSDV-AGEVE---E---EFAKAGKPVFSNAS  108 (349)
T ss_pred             EeCChhH-HHHHH---H---HHHHCCCEEEECCc
Confidence            9999643 23333   1   12345778888875

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.61  E-value=0.00021  Score=56.46  Aligned_cols=80  Identities=11%  Similarity=0.044  Sum_probs=53.5

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      |+.||+|+| .|..|..+.+.|.++.. ++.....+..+       ..   .+.++..+++|++|+|+|.... .+..  
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s-~~~~--   67 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------DA---AARRELLNAADVAILCLPDDAA-REAV--   67 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------cc---cCchhhhcCCCEEEECCCHHHH-HHHH--
Confidence            889999997 89999999999988763 44333222211       01   2234455789999999996543 3333  


Q ss_pred             ccchhhcCCCCCEEEEcCC
Q 044797           79 HEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st   97 (173)
                       .+   ....|..|||.|+
T Consensus        68 -~~---~~~~g~~VIDlSa   82 (313)
T PRK11863         68 -AL---IDNPATRVIDAST   82 (313)
T ss_pred             -HH---HHhCCCEEEECCh
Confidence             12   2356889999985

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.61  E-value=0.0008  Score=55.50  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=68.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEE-Ec----------CChHHHH---HHHHc------------CCceecChhhh-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQA-FE----------ISDPLVD---KFFML------------GGIRSASPMDA-   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~-~d----------~~~~~~~---~~~~~------------g~~~~~~~~~~-   55 (173)
                      ++|.|.|.|++|+..|+.|.+.|.+|++ .|          .+.+++.   .+.+.            ++... +.++. 
T Consensus       229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~~  307 (444)
T PRK14031        229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARPW  307 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcccc
Confidence            6899999999999999999999999875 67          4554443   11111            22222 23333 


Q ss_pred             hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      -.+||+++-|.-.+....+..   +.+.   .++..+|..+...|.+. +..+.+.++|+.++.+
T Consensus       308 ~~~cDIliPaAl~n~I~~~na---~~l~---a~g~~~V~EgAN~P~t~-eA~~~L~~rgI~~~PD  365 (444)
T PRK14031        308 GEKGDIALPSATQNELNGDDA---RQLV---ANGVIAVSEGANMPSTP-EAIKVFQDAKILYAPG  365 (444)
T ss_pred             cCCCcEEeecccccccCHHHH---HHHH---hcCCeEEECCCCCCCCH-HHHHHHHHCCcEEeCh
Confidence            357999998876433222222   1121   23555666666566554 4556777889988754

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=97.61  E-value=0.0011  Score=54.92  Aligned_cols=112  Identities=16%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             eEEEEeCChhhHH-HHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceec-ChhhhhcCCCEEEEec--cC-hhhhhhhhc
Q 044797            4 KVGFVGLDEYSVD-MAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSA-SPMDAGKDVSALVVVI--SH-VDQIDDIFF   77 (173)
Q Consensus         4 ~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v--~~-~~~~~~v~~   77 (173)
                      +|.|||.|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||.+-  |. .+.+.....
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~   80 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE   80 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence            5889999999998 99999999999999997643 33456666766543 2234466799888753  32 222322211


Q ss_pred             ------Cccchh-hcCCCCCEEE-EcCCCCHHHHHHHHHHHhcCCc
Q 044797           78 ------GHEGVL-KGLQKGAVII-LQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        78 ------~~~~i~-~~l~~g~~ii-~~st~~~~~~~~l~~~l~~~g~  115 (173)
                            .+.++. ..+++.++|. .-|.++..++.-+...|+..|.
T Consensus        81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~  126 (448)
T TIGR01082        81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL  126 (448)
T ss_pred             cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence                  011222 2222334443 4455666566677777776664

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.60  E-value=0.00061  Score=47.63  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=29.8

Q ss_pred             ChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           51 SPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        51 ~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +.++.+++||+|++++..+..    +.     .+.+++|++++|.+..
T Consensus        64 ~l~~~v~~ADIVvsAtg~~~~----i~-----~~~ikpGa~Vidvg~~  102 (140)
T cd05212          64 QLQSKVHDADVVVVGSPKPEK----VP-----TEWIKPGATVINCSPT  102 (140)
T ss_pred             CHHHHHhhCCEEEEecCCCCc----cC-----HHHcCCCCEEEEcCCC
Confidence            577889999999999985532    31     2468999999988754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK05086 malate dehydrogenase; Provisional

Probab=97.60  E-value=0.00036  Score=55.22  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=45.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHH---CCCeEEEEcCChHHH---HHHHHcC--Cce----ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIR---SGYKVQAFEISDPLV---DKFFMLG--GIR----SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~---~g~~V~~~d~~~~~~---~~~~~~g--~~~----~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+ |.+|++++..+..   .++++.++|+++...   -.+.+.+  ...    .+++.+.++++|+||+|.-
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            59999999 9999999988854   346899999885431   1122211  111    2344677889999999975

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.60  E-value=0.00062  Score=53.50  Aligned_cols=111  Identities=17%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh---hhhhhc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ---IDDIFF   77 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~---~~~v~~   77 (173)
                      +..+++|||.-.=-..+++.|.+.|++|.++.-+.+..   ...|+...++.+++++++|+|+..+|...+   ++..+.
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~   77 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS   77 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence            34689999999999999999999999999876543221   234778887888889999999999884221   111110


Q ss_pred             C-----ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           78 G-----HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        78 ~-----~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      .     +.+..+.++++++++ .+...|.    +.+.+.++|+..++
T Consensus        78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~  119 (296)
T PRK08306         78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVE  119 (296)
T ss_pred             ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEE
Confidence            0     124567789998555 3555554    22445578887653

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=97.59  E-value=0.00086  Score=51.40  Aligned_cols=108  Identities=13%  Similarity=0.077  Sum_probs=80.3

Q ss_pred             EEEEeCChhhHHHHHHHHHCC---CeEEEEcCChHHHHHHHHc----------CCceecChhhhhcCCCEEEEeccChhh
Q 044797            5 VGFVGLDEYSVDMAASLIRSG---YKVQAFEISDPLVDKFFML----------GGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      ..++|.|..+.....-..+.-   .+|.+|+|+.+..+.+.+.          .+....+.++++..+|+|+.|++.   
T Consensus       141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls---  217 (333)
T KOG3007|consen  141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS---  217 (333)
T ss_pred             EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---
Confidence            467899999999887665543   4899999999888776551          134567888999999999999974   


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .+.+++     .+.++||+.|--.++..|. .++..+.+-..+.-||+.+
T Consensus       218 tePilf-----gewlkpgthIdlVGsf~p~-mhEcDdelIq~a~vfVDsr  261 (333)
T KOG3007|consen  218 TEPILF-----GEWLKPGTHIDLVGSFKPV-MHECDDELIQSACVFVDSR  261 (333)
T ss_pred             CCceee-----eeeecCCceEeeeccCCch-HHHHhHHHhhhheEEEecc
Confidence            345553     3568899888777777775 4556666656778888864

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.58  E-value=0.00066  Score=53.13  Aligned_cols=110  Identities=13%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcC--CCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKD--VSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~~~   78 (173)
                      .||.|+|. |++|..+.++|.+.|++ .+|-.+|.+ .+.  -.|.+...+..++-+.  .|+.++++| +..+.+++  
T Consensus         9 ~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp-~~~v~~~l--   82 (291)
T PRK05678          9 TKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVP-PPFAADAI--   82 (291)
T ss_pred             CeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcC-HHHHHHHH--
Confidence            58999997 88999999999999987 444333331 111  1377778888888876  899999999 55666666  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                       ++..+.- -...+|-++....+..+++.+..+++|++.+..
T Consensus        83 -~e~~~~g-vk~avI~s~Gf~~~~~~~l~~~a~~~girvlGP  122 (291)
T PRK05678         83 -LEAIDAG-IDLIVCITEGIPVLDMLEVKAYLERKKTRLIGP  122 (291)
T ss_pred             -HHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence             2333321 123334333334333458888888899987654

>PRK05442 malate dehydrogenase; Provisional

Probab=97.57  E-value=0.00073  Score=53.78  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChH--HHHH----HHHc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDP--LVDK----FFML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~--~~~~----~~~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      +||+|||+ |.+|+.+|..|...+.       ++.++|++++  +++.    +.+.      ......+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            69999998 9999999999887663       7999998643  2211    1110      223344556778999999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |++.-
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            98763

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.57  E-value=0.00012  Score=58.30  Aligned_cols=61  Identities=15%  Similarity=0.099  Sum_probs=45.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-Cce-ec---ChhhhhcCCCEE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-GIR-SA---SPMDAGKDVSAL   62 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~-~~---~~~~~~~~~dvi   62 (173)
                      +++|||||.|+.|.+|+..-.+.|+++.+.|++++....-.+.. +.. .+   .+.++++.||+|
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi   66 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI   66 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE
Confidence            46899999999999999999999999999998876543322221 111 11   355677788876

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00043  Score=53.70  Aligned_cols=73  Identities=21%  Similarity=0.194  Sum_probs=58.1

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-+ .+|.+++..|.++|..|+++....              .++.+..+.+|+||+++..+.-+.        
T Consensus       158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~--------  215 (281)
T PRK14183        158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLIT--------  215 (281)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccC--------
Confidence            578999988 899999999999999999886432              245677899999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       216 -~~~vk~gavvIDvGin  231 (281)
T PRK14183        216 -EDMVKEGAIVIDIGIN  231 (281)
T ss_pred             -HHHcCCCcEEEEeecc
Confidence             2457899999999764

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.53  E-value=0.00038  Score=54.01  Aligned_cols=73  Identities=16%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .++.|+|-+ ..|.+++..|...|..|+++.++.              .++.+.+++||+||.+++-+.    ++.    
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~----lv~----  210 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAG----FIT----  210 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCccc----ccC----
Confidence            578899988 999999999999999999888653              246777889999999997442    231    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       211 -~~~vk~GavVIDVgi~  226 (279)
T PRK14178        211 -PDMVKPGATVIDVGIN  226 (279)
T ss_pred             -HHHcCCCcEEEEeecc
Confidence             2346999999999754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.53  E-value=0.0012  Score=52.77  Aligned_cols=111  Identities=12%  Similarity=0.003  Sum_probs=62.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc----------CCceecChhhhhc--CCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML----------GGIRSASPMDAGK--DVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~--~~dvii~~v~~   68 (173)
                      ..||.|||+|.+|+.+++.|...|. +++++|.+.-....+..+          |...+....+.++  +.++-+.....
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~  103 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ  103 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            3689999999999999999999997 899999874322222111          1011111111121  34444444332


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      ... .+      .+.+.+++-++|++++. .+.+...+.+.....++.++..
T Consensus       104 ~~~-~~------~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~iP~i~~  147 (339)
T PRK07688        104 DVT-AE------ELEELVTGVDLIIDATD-NFETRFIVNDAAQKYGIPWIYG  147 (339)
T ss_pred             cCC-HH------HHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEE
Confidence            111 11      11223445577887755 3555556666666677766543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.52  E-value=0.0014  Score=50.72  Aligned_cols=88  Identities=18%  Similarity=0.224  Sum_probs=62.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCceecCh---hhh----h--cCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRSASP---MDA----G--KDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~---~~~----~--~~~dvii~~v~~~~~~   72 (173)
                      .+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+...-+.   .+.    .  ...|+++-++..+..+
T Consensus       122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~  201 (280)
T TIGR03366       122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV  201 (280)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHH
Confidence            4688999999999999999999986 8888999999888887776432221   111    1  2479999998655444


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +..+       ..++++..++..+.
T Consensus       202 ~~~~-------~~l~~~G~iv~~G~  219 (280)
T TIGR03366       202 RACL-------ESLDVGGTAVLAGS  219 (280)
T ss_pred             HHHH-------HHhcCCCEEEEecc
Confidence            4443       45667666766553

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.52  E-value=0.00084  Score=55.44  Aligned_cols=65  Identities=15%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHC-------CC--eEEEEcCChHHHHHHH----H----c--CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRS-------GY--KVQAFEISDPLVDKFF----M----L--GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~-------g~--~V~~~d~~~~~~~~~~----~----~--g~~~~~~~~~~~~~~dvi   62 (173)
                      -||+|||+ |++|+.+|..|...       +.  ++..+|++.++++...    +    .  .+....+..+.++++|+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            48999999 99999999999887       54  7899999988775321    1    1  223334556778999999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |++.-
T Consensus       181 VitAG  185 (444)
T PLN00112        181 LLIGA  185 (444)
T ss_pred             EECCC
Confidence            99863

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.51  E-value=0.00022  Score=51.79  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             CCeEEEEeCChhhHHHHHH--HHHCCCeE-EEEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAAS--LIRSGYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~--l~~~g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~   68 (173)
                      +.++.+||+|++|.+++..  ..+.|+++ -++|.+++.+...... -+.-.++++..++  +.|+.++|||.
T Consensus        84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            3578999999999999964  34677776 5899999876543221 1122334555555  68899999994

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.51  E-value=0.0013  Score=50.62  Aligned_cols=58  Identities=16%  Similarity=0.124  Sum_probs=44.3

Q ss_pred             eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc-CCCEEEEec
Q 044797            9 GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK-DVSALVVVI   66 (173)
Q Consensus         9 G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~dvii~~v   66 (173)
                      |.|.+|+++...|.+.||+|++..|++.+.+......+...+..++... ++|+||--.
T Consensus         6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA   64 (297)
T COG1090           6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA   64 (297)
T ss_pred             cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence            7899999999999999999999999988776544433333344555555 699998654

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.50  E-value=0.00036  Score=55.61  Aligned_cols=58  Identities=14%  Similarity=0.211  Sum_probs=42.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~   65 (173)
                      +++.+||+|.||.-.+++|.++|. ++++.||+....+ +.+..    ...-+....+|+||+|
T Consensus       175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~-~~~~~----~~~~~~~~~~DvVIs~  233 (338)
T PRK00676        175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP-YRTVV----REELSFQDPYDVIFFG  233 (338)
T ss_pred             CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc-hhhhh----hhhhhcccCCCEEEEc
Confidence            589999999999999999999995 6999999975411 11110    0111334689999987

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.50  E-value=0.0015  Score=51.92  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCCh--HHHHH----HHHc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISD--PLVDK----FFML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      .||+|||+ |.+|+.++..|...+.       ++.++|+++  ++++.    +.+.      +.....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            58999998 9999999999988874       799999965  22321    1111      122334456778999999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99863

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.50  E-value=0.00076  Score=53.60  Aligned_cols=65  Identities=15%  Similarity=0.149  Sum_probs=46.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChHH--HHH----HHHc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDPL--VDK----FFML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      +||+|||+ |++|+.++..|...|.       ++.++|++++.  ++.    +.+.      .+....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            69999999 9999999999988774       79999995432  221    1110      123334556778999999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |++.-
T Consensus        83 vitaG   87 (322)
T cd01338          83 LLVGA   87 (322)
T ss_pred             EEeCC
Confidence            99863

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.50  E-value=0.0015  Score=52.23  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC---ChHHHHHHHHcCCceecChhh------hhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI---SDPLVDKFFMLGGIRSASPMD------AGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~---~~~~~~~~~~~g~~~~~~~~~------~~~~~dvii~~v~~~~~~~   73 (173)
                      .+|.|+|+|.+|...++.+...|.+|+++++   ++++.+.+.+.|+......++      .....|++|-++..+..+.
T Consensus       174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  253 (355)
T cd08230         174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAF  253 (355)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHH
Confidence            4788999999999999999999999999998   678888777777654322111      1235799999997544343


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ..+       ..++++..++..+.
T Consensus       254 ~~~-------~~l~~~G~~v~~G~  270 (355)
T cd08230         254 EAL-------PALAPNGVVILFGV  270 (355)
T ss_pred             HHH-------HHccCCcEEEEEec
Confidence            333       45666666665543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.49  E-value=8.8e-05  Score=55.47  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             CeEEEEeCChhhHHHHHHH--HHCCCeEE-EEcCChHHHHHHHHcC--CceecChhhhhc--CCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASL--IRSGYKVQ-AFEISDPLVDKFFMLG--GIRSASPMDAGK--DVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l--~~~g~~V~-~~d~~~~~~~~~~~~g--~~~~~~~~~~~~--~~dvii~~v~~~~   70 (173)
                      .+|++||+|.+|..+++.+  ...|+++. ++|+++++..... .+  +...++..+.++  +.|.+++|+|...
T Consensus        85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~  158 (213)
T PRK05472         85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEA  158 (213)
T ss_pred             cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence            4799999999999999864  35677765 6788877653222 12  222344566664  4999999999644

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.49  E-value=0.0014  Score=51.54  Aligned_cols=116  Identities=12%  Similarity=0.070  Sum_probs=79.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHH--CCCeEEEEcCChHHHHHHHHc-------------------CCceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIR--SGYKVQAFEISDPLVDKFFML-------------------GGIRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~d   60 (173)
                      |+||.-||+|.+|.+-..-++-  -..+|++.|.+.+++..+...                   ..-..++.+.+++++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead   80 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD   80 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence            4789999999999987665432  235789999998888654221                   1235667888999999


Q ss_pred             EEEEeccChhhhhh-----------hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCcee
Q 044797           61 ALVVVISHVDQIDD-----------IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFY  117 (173)
Q Consensus        61 vii~~v~~~~~~~~-----------v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~  117 (173)
                      +||+.+..|..+..           +-....-+.+.-...++++.-||......+.+...+..  .|++|
T Consensus        81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~f  150 (481)
T KOG2666|consen   81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKF  150 (481)
T ss_pred             eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCcee
Confidence            99999865532211           10000124444567789999999988888888888853  46665

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00046  Score=54.72  Aligned_cols=91  Identities=15%  Similarity=0.110  Sum_probs=56.2

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-----CC---ce-ecChhhh-hcCCCEEEEeccC
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-----GG---IR-SASPMDA-GKDVSALVVVISH   68 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~~dvii~~v~~   68 (173)
                      ||+||+|+| .|.-|.-+.+.|..+- .++..+..+..+=+.+.+.     |.   .. .-+.++. .++||++|+|+|+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh   80 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH   80 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence            789999995 6999999999998876 4655554333222222221     11   11 1122332 4569999999997


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ....+-+-       +.+.+|..|||.|+-
T Consensus        81 g~s~~~v~-------~l~~~g~~VIDLSad  103 (349)
T COG0002          81 GVSAELVP-------ELLEAGCKVIDLSAD  103 (349)
T ss_pred             hhHHHHHH-------HHHhCCCeEEECCcc
Confidence            65443332       234567779999873

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.49  E-value=0.00054  Score=45.27  Aligned_cols=65  Identities=12%  Similarity=-0.004  Sum_probs=46.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-ecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      .+|.|||.|.+|..=++.|++.|.+|+++.++.+..+    ..++. ....++.++++++|+.++.++..
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~   73 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPEL   73 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHH
Confidence            5799999999999999999999999999998862111    22222 12334567889999998876543

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.49  E-value=0.00054  Score=55.71  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             CeEEEEeCChhhHHH-HHHHHHCCCeEEEEcCChHHHHHHHHcC
Q 044797            3 SKVGFVGLDEYSVDM-AASLIRSGYKVQAFEISDPLVDKFFMLG   45 (173)
Q Consensus         3 ~~IgiiG~G~mG~~i-a~~l~~~g~~V~~~d~~~~~~~~~~~~g   45 (173)
                      |||.++|+|++|++. ...|.+.|++|++.|++++..+.+.++|
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qg   44 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRK   44 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCC
Confidence            589999999999855 7778889999999999998888887765

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=97.47  E-value=0.0015  Score=53.91  Aligned_cols=114  Identities=11%  Similarity=0.047  Sum_probs=66.8

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HH---H-HH-HcCCceec-ChhhhhcCCCEEEEec--cC-hhhhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VD---K-FF-MLGGIRSA-SPMDAGKDVSALVVVI--SH-VDQID   73 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~---~-~~-~~g~~~~~-~~~~~~~~~dvii~~v--~~-~~~~~   73 (173)
                      ||.|||+|..|.++|+.|.+.|++|+++|.++.. ..   . +. ..|+.... ...+.++++|+||...  |. .+.+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~   80 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ   80 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence            5899999999999999999999999999976432 11   1 22 24665432 1244567899887754  32 12222


Q ss_pred             hhhc------CccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHhcCCcee
Q 044797           74 DIFF------GHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        74 ~v~~------~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~~~g~~~  117 (173)
                      ....      .+.++...+.+.++|. .-|.++..++.-+...|+..|..+
T Consensus        81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~  131 (433)
T TIGR01087        81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKA  131 (433)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCe
Confidence            2110      0112322222334453 444556556667777777666543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.47  E-value=0.0018  Score=51.65  Aligned_cols=87  Identities=11%  Similarity=0.078  Sum_probs=62.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhhc---CCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAGK---DVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~~---~~dvii~~v~~~~~~~   73 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-     +..+..+   ..|++|-++..+..+.
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~  250 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSIN  250 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHH
Confidence            478899999999999999999998 688999999999988888864321     1222222   3799999987544443


Q ss_pred             hhhcCccchhhcCCCCCEEEEcC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ..+       +.++++..++..+
T Consensus       251 ~~~-------~~l~~~G~iv~~G  266 (343)
T PRK09880        251 TCL-------EVTRAKGVMVQVG  266 (343)
T ss_pred             HHH-------HHhhcCCEEEEEc
Confidence            333       4566777777654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.47  E-value=0.0018  Score=54.13  Aligned_cols=64  Identities=20%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceecC-hhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSAS-PMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~-~~~~~~~~dvii~~v   66 (173)
                      ++|.|||.|..|..+|+.|.+.|++|+++|+++.     ..+.+.+.|++.... ..+...++|+||.+.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~   86 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP   86 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence            4799999999999999999999999999996642     123455567665321 112345689999875

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.46  E-value=0.00083  Score=52.93  Aligned_cols=64  Identities=14%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHH----HHH------cCCceec-ChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDK----FFM------LGGIRSA-SPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~------~g~~~~~-~~~~~~~~~dvii~~v   66 (173)
                      +||+|||.|++|+++|..|...+  .++.++|++.++.+-    +.+      ....... ...+.++++|+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            58999999999999999997665  389999999655432    111      0122222 2246688999999987

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.46  E-value=0.0064  Score=49.48  Aligned_cols=65  Identities=14%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-----eE--EEE--cCChHHHHHHH----H----c--CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-----KV--QAF--EISDPLVDKFF----M----L--GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-----~V--~~~--d~~~~~~~~~~----~----~--g~~~~~~~~~~~~~~dvi   62 (173)
                      -||+|||+ |++|+.+|..|...+.     ++  .++  |++.++++...    +    .  .+....+..+.+++||+|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV  124 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA  124 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence            48999999 9999999999988773     23  344  88887764321    1    1  223334556778999999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |++.-
T Consensus       125 VitAG  129 (387)
T TIGR01757       125 LLIGA  129 (387)
T ss_pred             EECCC
Confidence            99753

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.45  E-value=0.0013  Score=48.74  Aligned_cols=111  Identities=9%  Similarity=0.008  Sum_probs=63.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .||.|+|+|.+|+.++++|...|. +++++|.+.=....+..        .|-..+....+.++  +.++-+.+.+....
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~  101 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVT  101 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCC
Confidence            589999999999999999999996 89999987321111111        12111111112221  23444444432111


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       .+      .+.+.+.+-++++++.. .+.....+.+.+.++++.++...
T Consensus       102 -~~------~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~~  143 (202)
T TIGR02356       102 -AE------NLELLINNVDLVLDCTD-NFATRYLINDACVALGTPLISAA  143 (202)
T ss_pred             -HH------HHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence             11      12223445567887754 45555667777778888877653

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.44  E-value=0.00092  Score=53.24  Aligned_cols=66  Identities=17%  Similarity=0.065  Sum_probs=47.4

Q ss_pred             EEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-cC------------------CceecChhhhhcCCCEEE
Q 044797            5 VGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-LG------------------GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g------------------~~~~~~~~~~~~~~dvii   63 (173)
                      |||+|+|.+|...++.+.+. +.++. +.|.+++....+.. .+                  +....+++++++++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            68999999999999998754 46765 56777775444433 12                  223446788888999999


Q ss_pred             EeccChh
Q 044797           64 VVISHVD   70 (173)
Q Consensus        64 ~~v~~~~   70 (173)
                      .|+|...
T Consensus        81 e~Tp~~~   87 (333)
T TIGR01546        81 DATPGGI   87 (333)
T ss_pred             ECCCCCC
Confidence            9998543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.44  E-value=0.0034  Score=46.85  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|||.|..|..=++.|++.|.+|+++.... +....+.+.+ +....  -..+.+.++++||.++.++..-+.+...
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~~~   92 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIAKA   92 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHHHHH
Confidence            579999999999999999999999999998775 5555555443 22111  1123345599999999965433333211


Q ss_pred             cc------------c----hhh-cCCCCCEEEEcCCC--CHHHHHHHHHHHhc
Q 044797           79 HE------------G----VLK-GLQKGAVIILQSTI--LPSHMQKLEKTFTG  112 (173)
Q Consensus        79 ~~------------~----i~~-~l~~g~~ii~~st~--~~~~~~~l~~~l~~  112 (173)
                      ..            +    +.+ ....+.+.|.+||.  +|...+.+.+.+.+
T Consensus        93 a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~  145 (210)
T COG1648          93 ARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA  145 (210)
T ss_pred             HHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence            00            0    111 13346677777664  48777777777654

>cd00704 MDH Malate dehydrogenase

Probab=97.43  E-value=0.00051  Score=54.59  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=46.3

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCCh--HHHHHH----HHc------CCceecChhhhhcCCCEEE
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISD--PLVDKF----FML------GGIRSASPMDAGKDVSALV   63 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~--~~~~~~----~~~------g~~~~~~~~~~~~~~dvii   63 (173)
                      ||+|+|+ |.+|+.++..|...+.       ++.++|+++  ++.+..    .+.      +.....+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            8999999 9999999999987662       599999987  543211    110      1223345668899999999


Q ss_pred             Eecc
Q 044797           64 VVIS   67 (173)
Q Consensus        64 ~~v~   67 (173)
                      ++.-
T Consensus        82 itAG   85 (323)
T cd00704          82 LVGA   85 (323)
T ss_pred             EeCC
Confidence            8763

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.43  E-value=0.0024  Score=50.30  Aligned_cols=61  Identities=13%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             EEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HH------cCCceecChhhhhcCCCEEEEecc
Q 044797            7 FVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FM------LGGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         7 iiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~------~g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|++|+.+|..|...+.  ++.++|++.++++..    .+      ...+...+..+.+++||+||++.-
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag   73 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG   73 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence            68999999999999988774  799999987765432    11      112334344577899999999864

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=97.43  E-value=0.0017  Score=51.70  Aligned_cols=65  Identities=11%  Similarity=0.076  Sum_probs=45.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCChHHHH--HHHHc----CCce---ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISDPLVD--KFFML----GGIR---SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~~---~~~~~~~~~~~dvii~~v~   67 (173)
                      .||+|||+ |++|+.++..|...+.  ++.++|+++...+  .+.+.    .+..   .++..+.++++|+||++.-
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            58999999 9999999999987664  8999999872211  11111    1111   2234678999999999864

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.42  E-value=0.0024  Score=52.87  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH--HHHHHHH--cCCceec--ChhhhhcCCCEEEEec--cC-hhhhhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP--LVDKFFM--LGGIRSA--SPMDAGKDVSALVVVI--SH-VDQIDD   74 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~--~g~~~~~--~~~~~~~~~dvii~~v--~~-~~~~~~   74 (173)
                      .|.|+|+|..|.++|+.|.+.|++|+++|.++.  ..+.+.+  .|+....  ...+.+.++|+||.+-  |. .+.+..
T Consensus         8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~   87 (448)
T PRK03803          8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA   87 (448)
T ss_pred             eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence            589999999999999999999999999997643  2234554  2665532  2344567889887753  32 122222


Q ss_pred             hhc------CccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCcee
Q 044797           75 IFF------GHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        75 v~~------~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~~  117 (173)
                      ...      .+.++...+.+..+|.-+ |.++..++.-+...|...|..+
T Consensus        88 a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~  137 (448)
T PRK03803         88 AAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV  137 (448)
T ss_pred             HHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence            110      011232222233455433 4455555666667777666543

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.42  E-value=0.0015  Score=53.96  Aligned_cols=117  Identities=11%  Similarity=0.063  Sum_probs=70.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH----HHHHHcCCceec--ChhhhhcCCCEEEEec--c-Chhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV----DKFFMLGGIRSA--SPMDAGKDVSALVVVI--S-HVDQI   72 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~~--~~~~~~~~~dvii~~v--~-~~~~~   72 (173)
                      .+||.|+|+|.-|.+.++.|.+.|++|+++|.++...    ..+...++....  ...+...++|+|+..-  | +.+.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v   86 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV   86 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence            3799999999999999999999999999999766551    122233443322  1225577899988863  2 11222


Q ss_pred             hhhhc-C-----ccchhhcCC-CCCEE-EEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           73 DDIFF-G-----HEGVLKGLQ-KGAVI-ILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        73 ~~v~~-~-----~~~i~~~l~-~g~~i-i~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +.... +     +-++.-... +..+| |.-|+++.-++.-+...+...|....
T Consensus        87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~  140 (448)
T COG0771          87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL  140 (448)
T ss_pred             HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce
Confidence            22221 0     111222221 33344 34455666666777777777776543

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.41  E-value=0.00091  Score=52.86  Aligned_cols=63  Identities=13%  Similarity=0.098  Sum_probs=44.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHH----HHHc--CCcee---c--ChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDK----FFML--GGIRS---A--SPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~~--g~~~~---~--~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+ |++|+.+|..|...+  .++.++|++  +++.    +.+.  .....   .  ++.+.++++|+||++.-
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG   77 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG   77 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence            59999999 999999999998888  479999988  3211    1211  11222   1  23577899999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.41  E-value=0.0017  Score=53.55  Aligned_cols=111  Identities=9%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCC----------hHHHHHHHH---c-------------CCceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEIS----------DPLVDKFFM---L-------------GGIRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~---~-------------g~~~~~~~~~~   55 (173)
                      ++|.|-|.|++|...|+.|.+.|.+|+ +.|.+          .++++.+.+   .             +.+.....+-+
T Consensus       238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~  317 (454)
T PTZ00079        238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPW  317 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcc
Confidence            589999999999999999999999887 78877          555533221   0             22222222222


Q ss_pred             hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      ..+||+.+-|.-.+....+-.      ......+..+|..++..|.+. +..+.|.++|+.|+.+
T Consensus       318 ~~~cDI~iPcA~~n~I~~~~a------~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~PD  375 (454)
T PTZ00079        318 EVPCDIAFPCATQNEINLEDA------KLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCPG  375 (454)
T ss_pred             cCCccEEEeccccccCCHHHH------HHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEECh
Confidence            347998888865332211111      111244566666666566554 6677888999998754

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.41  E-value=0.00086  Score=51.24  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEE--------cCChHHHHHHHH---c-CC--ceec----------Ch-hhhh-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF--------EISDPLVDKFFM---L-GG--IRSA----------SP-MDAG-   56 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~--------d~~~~~~~~~~~---~-g~--~~~~----------~~-~~~~-   56 (173)
                      +++.|-|.|++|...++.|.+.|.++.+.        |++.-..+.+.+   . +.  ....          +. ++.+ 
T Consensus        33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~  112 (244)
T PF00208_consen   33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILS  112 (244)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccccc
Confidence            58999999999999999999999877544        655444444332   2 22  1111          12 1444 


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .+||+++.|--.+....+.+      ...++++..+|-.+...|-+.+ -.+.|.++|+.++.+.
T Consensus       113 ~~~DiliP~A~~~~I~~~~~------~~~i~~~akiIvegAN~p~t~~-a~~~L~~rGI~viPD~  170 (244)
T PF00208_consen  113 VDCDILIPCALGNVINEDNA------PSLIKSGAKIIVEGANGPLTPE-ADEILRERGILVIPDF  170 (244)
T ss_dssp             SSSSEEEEESSSTSBSCHHH------CHCHHTT-SEEEESSSSSBSHH-HHHHHHHTT-EEE-HH
T ss_pred             ccccEEEEcCCCCeeCHHHH------HHHHhccCcEEEeCcchhccHH-HHHHHHHCCCEEEcch
Confidence            58999999965333222222      1134445555544444454433 3448889999988764

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.41  E-value=0.00071  Score=53.86  Aligned_cols=64  Identities=17%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC-------CeEEEEcCChHH--HHH----HHH-----c-CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG-------YKVQAFEISDPL--VDK----FFM-----L-GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g-------~~V~~~d~~~~~--~~~----~~~-----~-g~~~~~~~~~~~~~~dvi   62 (173)
                      .||+|+|+ |.+|+.++..|...+       .++.++|+++..  ++.    +.+     . .+....+..+.+++||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            58999999 999999999998754       489999996532  221    110     0 112234556788999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      |.+.
T Consensus        83 I~tA   86 (325)
T cd01336          83 ILVG   86 (325)
T ss_pred             EEeC
Confidence            9885

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.41  E-value=0.00025  Score=46.26  Aligned_cols=72  Identities=11%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             CeEEEEeCChhhHHHHHHH-HHCCCeE-EEEcCChHHHHHHHHcCCceecChhhhhcC--CCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASL-IRSGYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKD--VSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l-~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~   76 (173)
                      .++.++|+|+.|.+++..+ ...|+.+ .++|.++++..+-. .|+....+.+++.+.  .|+.++++| +....++.
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~   79 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVA   79 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHH
Confidence            4799999999999998644 4567664 68899988754211 155666577777665  999999999 44555555

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0021  Score=52.17  Aligned_cols=108  Identities=14%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH------------------HHHHHHHc-CCceecChhhhhcCCCEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP------------------LVDKFFML-GGIRSASPMDAGKDVSALV   63 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~------------------~~~~~~~~-g~~~~~~~~~~~~~~dvii   63 (173)
                      .||+|-|.|++|+..|+.|...|.+|++++-+..                  +...+.+. +.+.....+-+..+||+.+
T Consensus       208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~  287 (411)
T COG0334         208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI  287 (411)
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence            5899999999999999999999999877755443                  22233332 4455544333445799888


Q ss_pred             EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      -|.-.+....+-.       +.++.. +|+... ..|.+ .+..+.+.++|+.|+.+
T Consensus       288 PcA~~n~I~~~na-------~~l~ak-~V~EgA-N~P~t-~eA~~i~~erGIl~~PD  334 (411)
T COG0334         288 PCALENVITEDNA-------DQLKAK-IVVEGA-NGPTT-PEADEILLERGILVVPD  334 (411)
T ss_pred             ccccccccchhhH-------HHhhhc-EEEecc-CCCCC-HHHHHHHHHCCCEEcCh
Confidence            7765433222222       223322 444443 34544 34455566899988754

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.40  E-value=0.00072  Score=53.50  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCChHHHHH--HHHc--CCcee--c---ChhhhhcCCCEEEEecc
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISDPLVDK--FFML--GGIRS--A---SPMDAGKDVSALVVVIS   67 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~--~~~~--g~~~~--~---~~~~~~~~~dvii~~v~   67 (173)
                      ||+|||+ |++|+.+|..|...+.  ++.++|+++..-+.  +.+.  .....  .   ++.+.++++|+||++..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG   76 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG   76 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence            7999999 9999999999988775  79999998722111  1111  11222  1   23578999999999864

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.37  E-value=0.0029  Score=52.48  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=45.9

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-H----HHHHHcCCceecC--hh-----hhhcCCCEEEEec
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-V----DKFFMLGGIRSAS--PM-----DAGKDVSALVVVI   66 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~----~~~~~~g~~~~~~--~~-----~~~~~~dvii~~v   66 (173)
                      ||.|||+|..|.+.|+.|.+.|++|.++|+++.. .    +.+.+.|++....  ..     +...+.|+|+.+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~   76 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP   76 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence            7999999999999999999999999999976432 2    2355556654221  11     2466789888753

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.37  E-value=0.00046  Score=55.14  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEE--EcCChHHHHH-HHHcC--Cceec-ChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQA--FEISDPLVDK-FFMLG--GIRSA-SPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~--~d~~~~~~~~-~~~~g--~~~~~-~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      +||+|+|+ |..|..+.+.|.+++|++.-  +-.+.++..+ +.-.+  ..... +..+ ++++|++|+++|.. ...+.
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~   82 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSF   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHH
Confidence            68999985 99999999999987764321  1122222211 11111  11211 2223 47899999999953 33333


Q ss_pred             hcCccchhhcCCCCCEEEEcCCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .   +   .....|..+||.|+-
T Consensus        83 v---~---~~~~~G~~VIDlS~~   99 (336)
T PRK05671         83 A---E---KARAAGCSVIDLSGA   99 (336)
T ss_pred             H---H---HHHHCCCeEEECchh
Confidence            3   1   223568899999863

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.36  E-value=0.00074  Score=52.30  Aligned_cols=65  Identities=11%  Similarity=-0.060  Sum_probs=45.2

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC----CceecChhhhh------cC-CCEEEEeccC
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG----GIRSASPMDAG------KD-VSALVVVISH   68 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g----~~~~~~~~~~~------~~-~dvii~~v~~   68 (173)
                      +|.|.|+ |.+|+.+++.|.+.|++|.+..|++++........    ..-.+++.+++      ++ +|.++.+.+.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            4778876 99999999999999999999999987643210001    11122334445      45 8999988763

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.36  E-value=0.0021  Score=57.22  Aligned_cols=112  Identities=16%  Similarity=0.119  Sum_probs=68.4

Q ss_pred             eEEEEeCChhhHHH-HHHHHHCCCeEEEEcCCh-HHHHHHHHcCCceec-ChhhhhcCCCEEEEec--c-Chhhhhhhhc
Q 044797            4 KVGFVGLDEYSVDM-AASLIRSGYKVQAFEISD-PLVDKFFMLGGIRSA-SPMDAGKDVSALVVVI--S-HVDQIDDIFF   77 (173)
Q Consensus         4 ~IgiiG~G~mG~~i-a~~l~~~g~~V~~~d~~~-~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v--~-~~~~~~~v~~   77 (173)
                      +|.|+|+|..|.+. |+.|.+.|++|+++|.++ +..+.+.+.|+.... ...+.+.++|+||..-  | +.+.+.....
T Consensus         6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~   85 (809)
T PRK14573          6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS   85 (809)
T ss_pred             eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence            69999999999997 999999999999999764 334556666766532 2335567889888753  2 1122222211


Q ss_pred             C------ccchhhcCCCC-CEEE-EcCCCCHHHHHHHHHHHhcCCc
Q 044797           78 G------HEGVLKGLQKG-AVII-LQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        78 ~------~~~i~~~l~~g-~~ii-~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .      +.+++..+.++ .+|. .-|.++..++.-+...|+..|.
T Consensus        86 ~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~  131 (809)
T PRK14573         86 RGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK  131 (809)
T ss_pred             CCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            0      11232222233 4443 4455665566667777776554

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.34  E-value=0.003  Score=49.35  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=74.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcC--CCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKD--VSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~~~   78 (173)
                      .||.+.| .|..|+.+-+++...|++ .+|..+|.+ .+.  -.|.+...+..|+-+.  .|+.++++| +..+.+++  
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vp-a~~v~~~l--   80 (286)
T TIGR01019         7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVP-APFAADAI--   80 (286)
T ss_pred             CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence            5788888 599999999999999988 666666652 111  1377778888888776  799999999 55666666  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                       ++..+.- -...++-++.......+++.+..+++|++++..
T Consensus        81 -~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGP  120 (286)
T TIGR01019        81 -FEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGP  120 (286)
T ss_pred             -HHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence             2333221 123333333333333468888888899987643

ATP citrate lyases appear to form an outgroup.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.34  E-value=0.0011  Score=52.73  Aligned_cols=89  Identities=17%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++-|.|.|..|..+|++++..|..|.+++.+|=+.-...-.|.++. ..++++..+|++|+++-+.    +++.  .+-
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnk----dVi~--~eh  282 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNK----DVIR--KEH  282 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCc----CccC--HHH
Confidence            45667799999999999999999999999999876544444576655 4788889999999998743    2331  134


Q ss_pred             hhcCCCCCEEEEcCCC
Q 044797           83 LKGLQKGAVIILQSTI   98 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~   98 (173)
                      ...+++|.++.+++-.
T Consensus       283 ~~~MkDgaIl~N~GHF  298 (420)
T COG0499         283 FEKMKDGAILANAGHF  298 (420)
T ss_pred             HHhccCCeEEeccccc
Confidence            4568899999888743

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.33  E-value=0.00044  Score=54.92  Aligned_cols=66  Identities=11%  Similarity=0.052  Sum_probs=45.2

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHH--HHHc--CCce--ecC---hhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDK--FFML--GGIR--SAS---PMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~--~~~~--g~~~--~~~---~~~~~~~~dvii~~v~   67 (173)
                      |.||+|||+ |++|+.++..|...+  .++..+|++....+.  +.+.  ....  .++   ..+.++++|+|+++.-
T Consensus         8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            469999999 999999999998655  589999984322211  1111  1122  212   1578899999999874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.32  E-value=0.0044  Score=46.64  Aligned_cols=110  Identities=11%  Similarity=-0.010  Sum_probs=66.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|||.|.++..=++.|++.|.+|+++.+.. +.+..+.+.+ ++...  -..+.++++++||.|+.++..-+.+...
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~  105 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKH  105 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHH
Confidence            479999999999999999999999999997653 2344444433 22211  1123467899999999865432222210


Q ss_pred             cc--c--------------hhhc-CCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797           79 HE--G--------------VLKG-LQKGAVIILQST--ILPSHMQKLEKTFTG  112 (173)
Q Consensus        79 ~~--~--------------i~~~-l~~g~~ii~~st--~~~~~~~~l~~~l~~  112 (173)
                      ..  +              +.|+ +..|.+.|.+||  .+|...+.+.+.+++
T Consensus       106 a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~  158 (223)
T PRK05562        106 CDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKN  158 (223)
T ss_pred             HHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHH
Confidence            00  0              1111 234566665554  567777766666643

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=97.32  E-value=0.0035  Score=48.36  Aligned_cols=101  Identities=12%  Similarity=0.141  Sum_probs=71.1

Q ss_pred             CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee---eec-
Q 044797           45 GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY---ILE-  120 (173)
Q Consensus        45 g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~---v~~-  120 (173)
                      |++++++..++++++|++|+-+|-......++   +++.+++++|++|.+++|++|...-++-+.+.+..+..   -.. 
T Consensus       126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa  202 (340)
T TIGR01723       126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC  202 (340)
T ss_pred             CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence            55678888899999999999999766556676   57889999999999999998877665555565443321   111 


Q ss_pred             ------eeeee--ecCHhhHHHHHHHHHhhCCceee
Q 044797          121 ------RMFLI--SSSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       121 ------~~~~~--~g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                            ..+..  -.++++.+++..+.+..+...|+
T Consensus       203 VPgt~~q~Yi~egyAtEEqI~klveL~~sa~k~ay~  238 (340)
T TIGR01723       203 VPEMKGQVYIAEGYASEEAVNKLYELGKKARGKAFK  238 (340)
T ss_pred             CCCCCCceEeecccCCHHHHHHHHHHHHHhCCCeee
Confidence                  12222  23456777788888888765553

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=97.32  E-value=0.0033  Score=48.46  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=71.3

Q ss_pred             CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee---eece
Q 044797           45 GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY---ILER  121 (173)
Q Consensus        45 g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~---v~~~  121 (173)
                      |++++++..|+++++|++++-+|-......++   +++.+++++|++|.+++|++|...-+.-+.+.+..+..   -.+.
T Consensus       128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa  204 (342)
T PRK00961        128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA  204 (342)
T ss_pred             CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            56678888899999999999999766556676   57889999999999999999887666555565443322   1111


Q ss_pred             ------eeeee---cCHhhHHHHHHHHHhhCCceee
Q 044797          122 ------MFLIS---SSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       122 ------~~~~~---g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                            -.+.+   .++++.+++..+.+..+...|+
T Consensus       205 VPgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~  240 (342)
T PRK00961        205 VPEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFK  240 (342)
T ss_pred             CCCCCCceecccccCCHHHHHHHHHHHHHhCCCeee
Confidence                  11111   3456677778888888876553

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.30  E-value=0.0008  Score=53.97  Aligned_cols=89  Identities=16%  Similarity=0.076  Sum_probs=54.3

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCe---EE--EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYK---VQ--AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~---V~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+||+|+| .|..|..+.+.|.+++|+   +.  ...|+..+.-..............+.++++|++|+|+|... ..+.
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s~~~   85 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-SKKF   85 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-HHHH
Confidence            47999995 799999999999988873   32  22344333211111111222112244578999999999653 3344


Q ss_pred             hcCccchhhcCCCCCEEEEcCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .   .   .....|..+||.|+
T Consensus        86 ~---~---~~~~~g~~VIDlS~  101 (344)
T PLN02383         86 G---P---IAVDKGAVVVDNSS  101 (344)
T ss_pred             H---H---HHHhCCCEEEECCc
Confidence            3   1   22356889999985

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.29  E-value=0.00099  Score=46.07  Aligned_cols=112  Identities=13%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH--------HcCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF--------MLGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~--------~~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .||.++|+|.+|+.++++|...|. +++++|.+.=..+.+.        +.|...+....+.+.  +.++=+.+.+....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~   82 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID   82 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence            589999999999999999999997 7899987632211111        112211111222222  23444444443221


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM  122 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~  122 (173)
                       ++..      ...+.+-+++++++. ++.....+.+.+.+++..++...+
T Consensus        83 -~~~~------~~~~~~~d~vi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~  125 (135)
T PF00899_consen   83 -EENI------EELLKDYDIVIDCVD-SLAARLLLNEICREYGIPFIDAGV  125 (135)
T ss_dssp             -HHHH------HHHHHTSSEEEEESS-SHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             -cccc------cccccCCCEEEEecC-CHHHHHHHHHHHHHcCCCEEEEEe
Confidence             1111      112234467777754 355667788888888888876653

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.28  E-value=0.00043  Score=55.43  Aligned_cols=87  Identities=13%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCeE---EEEcCChHHHHHHHHcCC--ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYKV---QAFEISDPLVDKFFMLGG--IRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~V---~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ||+|+| .|..|..+.+.|.+++|++   ..+.++.+.-+.+...+.  ...+...+.++++|++|+|+|... ..+.. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHHHH-
Confidence            689998 8999999999999988863   233333222122222221  121111234578999999999543 33333 


Q ss_pred             CccchhhcCCCCCEEEEcCC
Q 044797           78 GHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st   97 (173)
                           ..++..|..|||.|+
T Consensus        79 -----~~~~~~G~~VID~ss   93 (339)
T TIGR01296        79 -----PKAAKCGAIVIDNTS   93 (339)
T ss_pred             -----HHHHHCCCEEEECCH
Confidence                 123456788998875

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.25  E-value=0.001  Score=52.98  Aligned_cols=64  Identities=16%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChHH--HHH----HHH------cCCceecChhhhhcCCCEEE
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDPL--VDK----FFM------LGGIRSASPMDAGKDVSALV   63 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~~dvii   63 (173)
                      ||+|||+ |++|+.++..|...+.       ++.++|++++.  ++.    +.+      .++....+..+.++++|+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            6899999 9999999999987553       59999996543  211    110      01112224467789999999


Q ss_pred             Eecc
Q 044797           64 VVIS   67 (173)
Q Consensus        64 ~~v~   67 (173)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            8763

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.25  E-value=0.003  Score=48.17  Aligned_cols=111  Identities=14%  Similarity=0.145  Sum_probs=66.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .||.|+|+|.+|+.+++.|...|. +++++|.+.-....+..        .|-..+....+.++  +.++-+.+.+..  
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~--  102 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK--  102 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc--
Confidence            589999999999999999999995 78888876433322211        12111111112221  345555555421  


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      +..     +.+.+.+..-++|++++- .+.....+.+...++++.++...
T Consensus       103 i~~-----~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~ip~v~~~  146 (240)
T TIGR02355       103 LDD-----AELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKVPLVSGA  146 (240)
T ss_pred             CCH-----HHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence            111     012233455678888764 45666677888888888887653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.25  E-value=0.004  Score=46.08  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=65.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----------HcCCceecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----------MLGGIRSASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----------~~g~~~~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      .||.|+|+|.+|+.++++|...|. +++++|.+.-....+.          +.|...+....+.++  +.++-+.+....
T Consensus        20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~   99 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED   99 (198)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence            689999999999999999999996 5889987632211111          112111111112221  355555554321


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .  ....   +...+.+.+-++|+++.. .+.....+.+...++++.++...
T Consensus       100 ~--~~~~---~~~~~~~~~~dvVi~~~d-~~~~~~~ln~~c~~~~ip~i~~~  145 (198)
T cd01485         100 S--LSND---SNIEEYLQKFTLVIATEE-NYERTAKVNDVCRKHHIPFISCA  145 (198)
T ss_pred             c--ccch---hhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence            1  0000   011122344567887743 46666778888888898887765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.24  E-value=0.0026  Score=50.96  Aligned_cols=110  Identities=11%  Similarity=0.015  Sum_probs=61.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc----------CCceecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML----------GGIRSASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      .+|.|||+|.+|+.+++.|.+.|+ +++++|++.-....+..+          |...+....+.++  +.++-+.+....
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~  104 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTD  104 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            689999999999999999999997 789999874211111100          0001111111111  345555554322


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      .. .+.      +.+.+..-++|++++- .+.+...+.+.+.+.++.++..
T Consensus       105 ~~-~~~------~~~~~~~~DlVid~~D-~~~~r~~in~~~~~~~ip~i~~  147 (338)
T PRK12475        105 VT-VEE------LEELVKEVDLIIDATD-NFDTRLLINDLSQKYNIPWIYG  147 (338)
T ss_pred             CC-HHH------HHHHhcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence            11 111      1122344567777764 3445455666666777777654

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.24  E-value=0.00089  Score=53.49  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=54.8

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeE---EEEcCChHHHHHHHHcC--CceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKV---QAFEISDPLVDKFFMLG--GIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V---~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      ++||+|+| .|..|..+.+.|.+++|++   ....++++.-+.+.-.+  ....+...+.++++|+||+|+|... .++.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~-s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSV-SKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHH-HHHH
Confidence            46899995 7999999999999988753   55543332222221112  1222111233478999999998543 3444


Q ss_pred             hcCccchhhcCCCCCEEEEcCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .      ..++..|..|||.|+
T Consensus        80 ~------~~~~~~G~~VIDlS~   95 (334)
T PRK14874         80 A------PKAAAAGAVVIDNSS   95 (334)
T ss_pred             H------HHHHhCCCEEEECCc
Confidence            3      123456788998875

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.23  E-value=0.0018  Score=54.86  Aligned_cols=113  Identities=12%  Similarity=0.004  Sum_probs=71.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCce--ecChhhh-hcCCCEEEEeccChhh--hhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIR--SASPMDA-GKDVSALVVVISHVDQ--IDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~-~~~~dvii~~v~~~~~--~~~v~   76 (173)
                      +++.|+|+|.+|.+++..|.+.|.+|+++||+.++.+.+.+. +...  ..+..+. ...+|+|+.++|..-.  .....
T Consensus       380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~p  459 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETP  459 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCc
Confidence            467889999999999999999999999999999988877653 2111  1122222 2356888877763321  11110


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .    -...+++..+++|..-... .+ .+.+..++.|...++.-
T Consensus       460 l----~~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~Gl  498 (529)
T PLN02520        460 I----SKHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIVSGT  498 (529)
T ss_pred             c----cHhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEeCcH
Confidence            0    0134667888999876433 32 34555566777665543

>PRK08017 oxidoreductase; Provisional

Probab=97.22  E-value=0.0013  Score=49.89  Aligned_cols=46  Identities=28%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG   46 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~   46 (173)
                      |+++|.|.|+ |.+|.++++.|++.|++|.+.+|++++.+.+.+.++
T Consensus         1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   47 (256)
T PRK08017          1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGF   47 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCC
Confidence            6678999987 999999999999999999999999988876665543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.22  E-value=0.005  Score=50.93  Aligned_cols=113  Identities=11%  Similarity=0.037  Sum_probs=65.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHH--HHHHHHcCCceecC--hhhhhcCCCEEEEec--cC-hhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPL--VDKFFMLGGIRSAS--PMDAGKDVSALVVVI--SH-VDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~--~~~~~~~g~~~~~~--~~~~~~~~dvii~~v--~~-~~~~~   73 (173)
                      ++|.|+|+|..|.+.++.|++.  |++|+++|.++..  .+.+.+ |++....  ..+.+.++|+||.+.  |. .+.+.
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~   86 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ   86 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence            5799999999999999999987  5889999976432  234433 6654211  234467899887753  31 22222


Q ss_pred             hhhc------CccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCce
Q 044797           74 DIFF------GHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        74 ~v~~------~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ....      .+.++...+.+.++|--+ |.++..++.-+...|...|..
T Consensus        87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~  136 (438)
T PRK04663         87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVK  136 (438)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCC
Confidence            2211      011232222234455444 445555556666777666554

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.22  E-value=0.0025  Score=47.70  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=29.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~   34 (173)
                      .+|.|+|+|.+|+.+++.|.+.|. +++++|.+
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999999997 58999887

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0021  Score=51.00  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=66.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC--------CCeE---EEEcCChHHHHHHHHcC-CceecCh-----hhhh--cCCCE
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS--------GYKV---QAFEISDPLVDKFFMLG-GIRSASP-----MDAG--KDVSA   61 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~--------g~~V---~~~d~~~~~~~~~~~~g-~~~~~~~-----~~~~--~~~dv   61 (173)
                      |+.+|+++|+|.+|+.+++-|.++        |.++   .+.+|+..+...+.-.. ....++.     .+.+  ++.|+
T Consensus         2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   81 (333)
T COG0460           2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDV   81 (333)
T ss_pred             ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCE
Confidence            357999999999999999998764        3333   34566655443111111 1122222     3333  35678


Q ss_pred             EEEeccC-hhhhhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCcee
Q 044797           62 LVVVISH-VDQIDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        62 ii~~v~~-~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~  117 (173)
                      ++.+++. ....+. .   +-+.++++.|++++...-.. .....++.+..+++|..+
T Consensus        82 vve~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l  135 (333)
T COG0460          82 VVELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKL  135 (333)
T ss_pred             EEecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeE
Confidence            9988875 222232 2   23557788999998764321 112357777777777654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.18  E-value=0.006  Score=51.04  Aligned_cols=108  Identities=11%  Similarity=0.115  Sum_probs=70.2

Q ss_pred             CeEEEEeC----------ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----------------------CCceec
Q 044797            3 SKVGFVGL----------DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----------------------GGIRSA   50 (173)
Q Consensus         3 ~~IgiiG~----------G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~~~~   50 (173)
                      +||+|+|+          ..-...+++.|.+.|.+|.+||+.-+..+.-...                      ++..++
T Consensus       325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
T PLN02353        325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW  404 (473)
T ss_pred             CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence            58999997          4467789999999999999999864332111011                      234556


Q ss_pred             ChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           51 SPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        51 ~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +..++++++|+|++++..+. ++..-  .+.+.+.+.+..+|+|.-.....      +.+++.|..|..
T Consensus       405 ~~~~a~~~aD~vvi~t~~~e-f~~l~--~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~  464 (473)
T PLN02353        405 DAYEATKGAHGICILTEWDE-FKTLD--YQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS  464 (473)
T ss_pred             CHHHHhcCCCEEEECCCChH-hcccC--HHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence            66789999999999998654 43321  12344445555689998765421      223345777654

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.17  E-value=0.0014  Score=52.54  Aligned_cols=88  Identities=10%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC-CeEEEE-cCChHHHHHHHHc-------CC-------ceecChhhhhcCCCEEEEe
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG-YKVQAF-EISDPLVDKFFML-------GG-------IRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g-~~V~~~-d~~~~~~~~~~~~-------g~-------~~~~~~~~~~~~~dvii~~   65 (173)
                      +||+|+|+ |.||..+++.|..+. +++... +++++.-+.+.+.       +.       .......+..+++|+|+.|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            48999995 999999999998876 576544 5443221111110       00       1111122345789999999


Q ss_pred             ccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        66 v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +|.... .++.   +   .....|..++|.|.
T Consensus        81 ~p~~~s-~~~~---~---~~~~~G~~VIDlsg  105 (341)
T TIGR00978        81 LPSEVA-EEVE---P---KLAEAGKPVFSNAS  105 (341)
T ss_pred             CCHHHH-HHHH---H---HHHHCCCEEEECCh
Confidence            996533 3332   1   22346777888764

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=97.16  E-value=0.0062  Score=50.28  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             eEEEEeCChhhH-HHHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceecChhhh-hcCCCEEEEec--c-Chhhhhhhhc
Q 044797            4 KVGFVGLDEYSV-DMAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSASPMDA-GKDVSALVVVI--S-HVDQIDDIFF   77 (173)
Q Consensus         4 ~IgiiG~G~mG~-~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v--~-~~~~~~~v~~   77 (173)
                      +|-|||.|-.|. ++|+-|++.|++|+..|.+.. ..+++.++|++.....++. +.+.|+||...  + +++.+.....
T Consensus         9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A~e   88 (459)
T COG0773           9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEIVAALE   88 (459)
T ss_pred             eEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHHHHHHH
Confidence            599999999985 578889999999999997654 4567888888765443332 56677666543  3 2233333321


Q ss_pred             -------CccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797           78 -------GHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        78 -------~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~  115 (173)
                             +++-+.+.++....| |.-+-++..++.-+...+.+.|.
T Consensus        89 ~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~gl  134 (459)
T COG0773          89 RGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGL  134 (459)
T ss_pred             cCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCC
Confidence                   111123334443333 23333555555666666665543

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.15  E-value=0.0023  Score=47.04  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CC--cee--cC----hhhhhcCCCEEEEeccChhh-
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GG--IRS--AS----PMDAGKDVSALVVVISHVDQ-   71 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--~~~--~~----~~~~~~~~dvii~~v~~~~~-   71 (173)
                      +++.|||-+ .+|.+++..|.+.|..|+++|.+.-..  +... ..  ..+  .+    ..+.+++||+||++++.+.- 
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~  140 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYK  140 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCc
Confidence            578899754 579999999999999999998654222  0000 00  011  12    56788999999999986543 


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +.         .+.+++|+++||.+..
T Consensus       141 i~---------~d~ik~GavVIDVGi~  158 (197)
T cd01079         141 VP---------TELLKDGAICINFASI  158 (197)
T ss_pred             cC---------HHHcCCCcEEEEcCCC
Confidence            21         2457899999999865

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.15  E-value=0.0063  Score=47.88  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChh-------hhhc-----CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPM-------DAGK-----DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~-------~~~~-----~~dvii~~v~~~   69 (173)
                      .+++|.|+|.+|.+.++..+.+|. +++..|.|+++.+...+.|++-.-++.       |.+.     +.|+-+.|+-..
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~  273 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV  273 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence            478999999999999999999995 799999999999999988876444443       2221     578888888876


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      +.+++.+
T Consensus       274 ~~m~~al  280 (375)
T KOG0022|consen  274 STMRAAL  280 (375)
T ss_pred             HHHHHHH
Confidence            6666665

>PRK08328 hypothetical protein; Provisional

Probab=97.14  E-value=0.0069  Score=45.90  Aligned_cols=111  Identities=13%  Similarity=0.031  Sum_probs=66.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--------CCc-eecChhhhhc--CCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--------GGI-RSASPMDAGK--DVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~-~~~~~~~~~~--~~dvii~~v~~~~   70 (173)
                      .+|.|+|+|..|+.+++.|...|. +++++|.+.-....+..+        |.. ......+.++  +.|+.+.+.+...
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~  107 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL  107 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence            589999999999999999999996 688998775433333221        110 0000011111  4677776654211


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       .++      .+.+.+++-++|+++.-. +.+-..+.+...++++.++...
T Consensus       108 -~~~------~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~  150 (231)
T PRK08328        108 -SEE------NIDEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGA  150 (231)
T ss_pred             -CHH------HHHHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEe
Confidence             111      122234556788887654 5555566667777888887654

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.11  E-value=0.0032  Score=49.40  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-+ .+|.+++..|.+.|..|++++..              +.++.+.++++|+||.++.-+.    .+     
T Consensus       168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~----~i-----  224 (299)
T PLN02516        168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAM----MI-----  224 (299)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcC----cc-----
Confidence            578899755 57999999999999999998643              2357788899999999997543    22     


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                      -.+.+++|+++||.+..
T Consensus       225 ~~~~vk~gavVIDvGin  241 (299)
T PLN02516        225 KGDWIKPGAAVIDVGTN  241 (299)
T ss_pred             CHHHcCCCCEEEEeecc
Confidence            12468899999999764

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.11  E-value=0.0036  Score=51.26  Aligned_cols=106  Identities=11%  Similarity=-0.032  Sum_probs=61.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh--cCCCEEEEe--ccCh-hhh---hh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG--KDVSALVVV--ISHV-DQI---DD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~~dvii~~--v~~~-~~~---~~   74 (173)
                      |+|.|+|+|.-|.++|+.|. .|++|+++|.++.... ..+.|+... . .+..  +++|+||..  +|.. +.+   ++
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            58999999999999999999 9999999996543221 223355543 2 2223  468987765  2322 212   12


Q ss_pred             hhcCccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCC
Q 044797           75 IFFGHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNL  114 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g  114 (173)
                      ++. +.++...+. ..+| |.-|.++..++.-+...|...+
T Consensus        77 i~~-~~e~~~~~~-~~~i~ITGT~GKTTTt~ml~~iL~~~g  115 (401)
T PRK03815         77 LIS-EYDYFYDVM-PFSIWISGTNGKTTTTQMTTHLLEDFG  115 (401)
T ss_pred             Hhh-HHHHHHHhc-CCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence            221 112222222 2344 4445555555666677777655

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.10  E-value=0.0042  Score=46.90  Aligned_cols=33  Identities=21%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      .+|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            689999999999999999999996 788888753

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.07  E-value=0.0018  Score=51.70  Aligned_cols=64  Identities=8%  Similarity=0.084  Sum_probs=44.9

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHc-CCce-----e---cChhhhhcCCCEEEEe
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFML-GGIR-----S---ASPMDAGKDVSALVVV   65 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~~~-----~---~~~~~~~~~~dvii~~   65 (173)
                      ||+|.|.|+ |.+|+.+++.|++. |++|++.+|++++...+... +++.     .   ....++++++|+||-+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~   75 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL   75 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence            468999986 99999999999986 69999999987655443321 2221     1   1123456789999964

>PLN00016 RNA-binding protein; Provisional

Probab=97.07  E-value=0.0098  Score=48.13  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             CCCeEEEE----e-CChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797            1 MASKVGFV----G-LDEYSVDMAASLIRSGYKVQAFEISDPL   37 (173)
Q Consensus         1 m~~~Igii----G-~G~mG~~ia~~l~~~g~~V~~~d~~~~~   37 (173)
                      |+++|.|+    | .|.+|..+++.|++.|++|++.+|+++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            46789999    5 5999999999999999999999998754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.05  E-value=0.012  Score=48.83  Aligned_cols=114  Identities=17%  Similarity=0.047  Sum_probs=67.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH--HHHHHH--cCCceec--ChhhhhcCCCEEEEec--c-Chhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL--VDKFFM--LGGIRSA--SPMDAGKDVSALVVVI--S-HVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~~--~~~~~~~~~dvii~~v--~-~~~~~~   73 (173)
                      ++|.|+|.|..|.+.|+.|.+.|++|+++|.++..  .+++.+  .|+....  ...+...++|+||.+.  | +.+.+.
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~   85 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE   85 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence            58999999999999999999999999999976542  344443  2554322  1233346789988864  2 122222


Q ss_pred             hhhcC------ccchh-hcCC--CCCEE-EEcCCCCHHHHHHHHHHHhcCCce
Q 044797           74 DIFFG------HEGVL-KGLQ--KGAVI-ILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        74 ~v~~~------~~~i~-~~l~--~g~~i-i~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .....      +.++. ...+  +..+| |.-|.++..++.-+...|+..|..
T Consensus        86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~  138 (445)
T PRK04308         86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD  138 (445)
T ss_pred             HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence            22110      11222 2222  23444 344555555566666777665554

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.04  E-value=0.004  Score=48.46  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-+ .+|.+++..|.+.+..|+++...              +.++.+.+++||+||+++.-+.-+.        
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~--------  215 (284)
T PRK14170        158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVK--------  215 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC--------
Confidence            578899755 57999999999999999988643              2356778899999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCCC
Q 044797           82 VLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~   99 (173)
                       .+.+++|+++||.+...
T Consensus       216 -~~~vk~GavVIDvGin~  232 (284)
T PRK14170        216 -KDYIKPGAIVIDVGMDR  232 (284)
T ss_pred             -HHHcCCCCEEEEccCcc
Confidence             24578999999998653

>PRK08223 hypothetical protein; Validated

Probab=97.03  E-value=0.0057  Score=47.75  Aligned_cols=111  Identities=13%  Similarity=-0.003  Sum_probs=63.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.|||+|.+|+.++++|+..|. ++.++|.+.=....+..        .|-..+....+.+.  +.++=|.+.+..-.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~  107 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG  107 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            589999999999999999999996 78888876432222211        12111111222222  23333444332111


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCceeeec
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~v~~  120 (173)
                       +      +.+.+.+..-++|+|.+... ..+-..+.+....+++.++..
T Consensus       108 -~------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~  150 (287)
T PRK08223        108 -K------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA  150 (287)
T ss_pred             -c------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence             1      11122334457888876532 345566777777888888765

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.01  E-value=0.0031  Score=48.01  Aligned_cols=66  Identities=14%  Similarity=0.081  Sum_probs=47.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--CCce-----ec---Chhhhh-cCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--GGIR-----SA---SPMDAG-KDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-----~~---~~~~~~-~~~dvii~~v~   67 (173)
                      +++|.|+| .|.+|..+++.|++.|++|++..|++++.......  ++..     .+   +..+.+ .++|+||.+.+
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g   94 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATG   94 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence            36899998 59999999999999999999999998876544322  2221     11   122344 57899998765

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=97.01  E-value=0.0081  Score=47.69  Aligned_cols=87  Identities=14%  Similarity=0.235  Sum_probs=60.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChh-hhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPM-DAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .+|.|.|+|.+|...++.+...|..|++.++++++.+.+.+.|+...-+.. ...+..|+++.+...+..+..       
T Consensus       167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~-------  239 (329)
T TIGR02822       167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPP-------  239 (329)
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHH-------
Confidence            368899999999999988889999999999999999888888875433221 112346887777664433332       


Q ss_pred             hhhcCCCCCEEEEcC
Q 044797           82 VLKGLQKGAVIILQS   96 (173)
Q Consensus        82 i~~~l~~g~~ii~~s   96 (173)
                      ..+.++++..++..+
T Consensus       240 ~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       240 ALEALDRGGVLAVAG  254 (329)
T ss_pred             HHHhhCCCcEEEEEe
Confidence            234566666666544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=97.01  E-value=0.0095  Score=47.19  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=60.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-cC----hh---hhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-AS----PM---DAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-~~----~~---~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+... +.    .+   +...  ..|+++-++..+..
T Consensus       165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~  244 (339)
T cd08239         165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAA  244 (339)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHH
Confidence            4788999999999999999999988 9999999999888877775322 11    11   2222  58999999875443


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ....+       ..++++..++..+
T Consensus       245 ~~~~~-------~~l~~~G~~v~~g  262 (339)
T cd08239         245 RRLAL-------EAVRPWGRLVLVG  262 (339)
T ss_pred             HHHHH-------HHhhcCCEEEEEc
Confidence            33333       3455555665544

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=97.01  E-value=0.0064  Score=47.80  Aligned_cols=85  Identities=19%  Similarity=0.110  Sum_probs=57.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .++.|+|+|.+|...++.+...|.+ |.++++++++++...+..+  .+..++.-...|++|-|+..+..++..+     
T Consensus       146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~~~~~~~-----  218 (308)
T TIGR01202       146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPSLIDTLV-----  218 (308)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHHHHHHHH-----
Confidence            3688999999999999999889976 6678888888765544321  1111112235899999998654444443     


Q ss_pred             hhhcCCCCCEEEEcC
Q 044797           82 VLKGLQKGAVIILQS   96 (173)
Q Consensus        82 i~~~l~~g~~ii~~s   96 (173)
                        +.++++..++..+
T Consensus       219 --~~l~~~G~iv~~G  231 (308)
T TIGR01202       219 --RRLAKGGEIVLAG  231 (308)
T ss_pred             --HhhhcCcEEEEEe
Confidence              4556666666554

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.0045  Score=48.30  Aligned_cols=73  Identities=21%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.+..|+++....              .++.+..++||+||+++..+.-+.        
T Consensus       156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~--------  213 (287)
T PRK14173        156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPHLIT--------  213 (287)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccC--------
Confidence            57888974 5689999999999999999886432              356778889999999998554221        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ..++++|+++||.+..
T Consensus       214 -~~~vk~GavVIDVGin  229 (287)
T PRK14173        214 -PEMVRPGAVVVDVGIN  229 (287)
T ss_pred             -HHHcCCCCEEEEccCc
Confidence             2457899999999764

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.004  Score=48.43  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=56.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.|..|+++....              .++.+..++||+||+++.-+.-+.        
T Consensus       157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~i~--------  214 (282)
T PRK14169        157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHFIG--------  214 (282)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCccC--------
Confidence            57888875 4679999999999999999886332              346777889999999998654322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       215 -~~~vk~GavVIDvGin  230 (282)
T PRK14169        215 -ADAVKPGAVVIDVGIS  230 (282)
T ss_pred             -HHHcCCCcEEEEeecc
Confidence             2467899999999764

>PRK06813 homoserine dehydrogenase; Validated

Probab=97.00  E-value=0.0061  Score=48.92  Aligned_cols=116  Identities=11%  Similarity=0.044  Sum_probs=64.0

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC--------CCeE---EEEcCChHHHH-------HHHHcC--Cc-----eecChhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS--------GYKV---QAFEISDPLVD-------KFFMLG--GI-----RSASPMDA   55 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~--------g~~V---~~~d~~~~~~~-------~~~~~g--~~-----~~~~~~~~   55 (173)
                      |+.+|+++|+|.+|+.+++-|.++        |.++   .+.+++.....       .+.+..  ..     ......+.
T Consensus         1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            678999999999999999987543        4443   34465543322       111110  00     11122222


Q ss_pred             h-c--CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceee
Q 044797           56 G-K--DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        56 ~-~--~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v  118 (173)
                      . .  +.|+||-|+|++..-.+...  .-+.++++.|+.+|..+-... ....++.+..+++|+.|.
T Consensus        81 ~~~~~~~dVvVe~T~s~~~~~e~a~--~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~  145 (346)
T PRK06813         81 ATDNISGTVLVESTVTNLKDGNPGK--QYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR  145 (346)
T ss_pred             hcCCCCCCEEEECCCCccCCchHHH--HHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence            2 2  47999999874311001110  113466788999987753211 123667777777787764

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.99  E-value=0.0047  Score=47.96  Aligned_cols=73  Identities=22%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.|..|++++..              +.++.+..++||+||+++.-+.-+.        
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------  216 (278)
T PRK14172        159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFID--------  216 (278)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC--------
Confidence            57889974 568999999999999999998743              2356778889999999998554321        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       217 -~~~ik~gavVIDvGin  232 (278)
T PRK14172        217 -EEYVKEGAIVIDVGTS  232 (278)
T ss_pred             -HHHcCCCcEEEEeecc
Confidence             2457899999998653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.99  E-value=0.0037  Score=54.31  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCceec--------Chh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRSA--------SPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~~--------~~~   53 (173)
                      ++|.|||.|..|...|..|.+.|++|+++++.+.                     ..+.+.+.|+....        +..
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~  407 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE  407 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence            5899999999999999999999999999998643                     22334455654321        233


Q ss_pred             hhhcCCCEEEEecc
Q 044797           54 DAGKDVSALVVVIS   67 (173)
Q Consensus        54 ~~~~~~dvii~~v~   67 (173)
                      +...+.|.||+++.
T Consensus       408 ~~~~~~DavilAtG  421 (654)
T PRK12769        408 SLLEDYDAVFVGVG  421 (654)
T ss_pred             HHHhcCCEEEEeCC
Confidence            44567899999875

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.98  E-value=0.0042  Score=48.32  Aligned_cols=73  Identities=15%  Similarity=0.139  Sum_probs=56.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+++..|+++....              .++.+..+.||+||+++.-+.-+.        
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~--------  216 (282)
T PRK14180        159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFIT--------  216 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCC--------
Confidence            57888864 5689999999999999999887432              256667889999999998654322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       217 -~~~vk~gavVIDvGin  232 (282)
T PRK14180        217 -ADMVKEGAVVIDVGIN  232 (282)
T ss_pred             -HHHcCCCcEEEEeccc
Confidence             2457899999999754

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=96.97  E-value=0.0039  Score=48.24  Aligned_cols=74  Identities=19%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||-++ +|.+|+..|.+.++.|+++....              .+..+..+++|+++.++.-+.-++        
T Consensus       157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~--------  214 (283)
T COG0190         157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIK--------  214 (283)
T ss_pred             CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccc--------
Confidence            5788998775 69999999999999999997542              356777889999999997544322        


Q ss_pred             hhhcCCCCCEEEEcCCCC
Q 044797           82 VLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~   99 (173)
                       .+.+++|.+++|.+...
T Consensus       215 -~d~vk~gavVIDVGinr  231 (283)
T COG0190         215 -ADMVKPGAVVIDVGINR  231 (283)
T ss_pred             -cccccCCCEEEecCCcc
Confidence             24678999999987643

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.97  E-value=0.0012  Score=51.74  Aligned_cols=65  Identities=20%  Similarity=0.046  Sum_probs=47.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |+|.|.| +|.+|..+++.|++.|++|++.+|++++...+...++..       ..+..++++++|+||.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4788996 599999999999999999999999877654333223221       1234456778999988763

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.97  E-value=0.0047  Score=48.40  Aligned_cols=74  Identities=16%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.|..|+++...              +.++.+..++||+||+++.-+.-+.        
T Consensus       159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------  216 (297)
T PRK14186        159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIG--------  216 (297)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC--------
Confidence            57889975 467999999999999999988643              2356777889999999998554221        


Q ss_pred             hhhcCCCCCEEEEcCCCC
Q 044797           82 VLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~   99 (173)
                       ...+++|+++||.+...
T Consensus       217 -~~~ik~gavVIDvGin~  233 (297)
T PRK14186        217 -AEMVKPGAVVVDVGIHR  233 (297)
T ss_pred             -HHHcCCCCEEEEecccc
Confidence             24678999999998653

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.96  E-value=0.0049  Score=47.98  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.||| ...+|.+++..|.+.+..|++++..              +.++.+..++||+||+++.-+.-+.        
T Consensus       160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~--------  217 (284)
T PRK14177        160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK--------  217 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC--------
Confidence            5788886 4568999999999999999988743              2356677899999999998554321        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       218 -~~~ik~gavVIDvGin  233 (284)
T PRK14177        218 -ADWISEGAVLLDAGYN  233 (284)
T ss_pred             -HHHcCCCCEEEEecCc
Confidence             2467899999999864

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.95  E-value=0.0023  Score=46.73  Aligned_cols=64  Identities=11%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             eEEEEeCChhhHHHH-HHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEEe
Q 044797            4 KVGFVGLDEYSVDMA-ASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia-~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~~   65 (173)
                      ||+|||.|..-.+.- ..+...     +.++..+|+++++++....        .+    +..+++.+++++++|+||.+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~   80 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ   80 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence            799999999887743 233322     2489999999999875322        23    34578999999999999999


Q ss_pred             cc
Q 044797           66 IS   67 (173)
Q Consensus        66 v~   67 (173)
                      ..
T Consensus        81 ir   82 (183)
T PF02056_consen   81 IR   82 (183)
T ss_dssp             --
T ss_pred             ee
Confidence            85

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.94  E-value=0.0051  Score=47.95  Aligned_cols=73  Identities=16%  Similarity=0.164  Sum_probs=56.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.||| ...+|.+++..|.+.+..|++++..              +.++.+.+++||+||.++..+.-    +.    
T Consensus       159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~----i~----  216 (284)
T PRK14190        159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKL----IT----  216 (284)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCc----CC----
Confidence            5788886 5578999999999999999988643              23567788999999999975542    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       217 -~~~ik~gavVIDvGi~  232 (284)
T PRK14190        217 -ADMVKEGAVVIDVGVN  232 (284)
T ss_pred             -HHHcCCCCEEEEeecc
Confidence             2457899999999754

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.94  E-value=0.0055  Score=47.71  Aligned_cols=73  Identities=14%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.+..|+++....              .++.+..++||++|+++.-+.-+.        
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~--------  215 (282)
T PRK14166        158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLR--------  215 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccC--------
Confidence            57888875 4679999999999999999887542              346778889999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       216 -~~~vk~GavVIDvGin  231 (282)
T PRK14166        216 -SDMVKEGVIVVDVGIN  231 (282)
T ss_pred             -HHHcCCCCEEEEeccc
Confidence             2457899999999754

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.94  E-value=0.0089  Score=45.70  Aligned_cols=110  Identities=11%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH--------HcCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF--------MLGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~--------~~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .||.|+|+|.+|+.++++|...|. +++++|.+.=....+.        +.|-..+....+.++  +.++-+.+.+..-.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~  112 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD  112 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            589999999999999999999996 7888887632221111        112111111112121  34444444432111


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                       +      +.+.+.++.-++|++++- .+.....+.+...++++.++..
T Consensus       113 -~------~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~  153 (245)
T PRK05690        113 -D------DELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSG  153 (245)
T ss_pred             -H------HHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEe
Confidence             1      111223445568888764 4555556777777778877754

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.93  E-value=0.01  Score=47.32  Aligned_cols=85  Identities=16%  Similarity=0.107  Sum_probs=56.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccC---hhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISH---VDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~---~~~~~~v   75 (173)
                      .+|.|+|+|.+|...++.+++ .| .+|+++++++++.+.+.+.+....  ..+..+  ..|+||-++..   +..+.+.
T Consensus       165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~~~~~~~~~~  242 (341)
T cd08237         165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGRGSQSAINQI  242 (341)
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCCccHHHHHHH
Confidence            478899999999999888775 44 689999999999887765443321  112222  47999999873   2233333


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                             ...++++..++..+
T Consensus       243 -------~~~l~~~G~iv~~G  256 (341)
T cd08237         243 -------IDYIRPQGTIGLMG  256 (341)
T ss_pred             -------HHhCcCCcEEEEEe
Confidence                   34566666665443

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.92  E-value=0.0058  Score=47.63  Aligned_cols=73  Identities=11%  Similarity=0.089  Sum_probs=56.4

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHH--CCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIR--SGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      +++.|||- ..+|.+++..|.+  .+..|+++...              +.++.+..+.||+||+++.-+.-    +   
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~----i---  217 (284)
T PRK14193        159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHL----V---  217 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCc----c---
Confidence            57888864 5689999999988  68899988753              23577888999999999985542    2   


Q ss_pred             cchhhcCCCCCEEEEcCCC
Q 044797           80 EGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~   98 (173)
                        -.+++++|+++||.+..
T Consensus       218 --~~~~ik~GavVIDvGin  234 (284)
T PRK14193        218 --TADMVKPGAAVLDVGVS  234 (284)
T ss_pred             --CHHHcCCCCEEEEcccc
Confidence              12468999999999764

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.91  E-value=0.0017  Score=51.88  Aligned_cols=87  Identities=11%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC---eEEEEc--CChHHHHHHHHcCCceecChhhh-hcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY---KVQAFE--ISDPLVDKFFMLGGIRSASPMDA-GKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~---~V~~~d--~~~~~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~v   75 (173)
                      ++|+|||+ |..|.-+.+.|.++.|   ++....  ++..+.-.+........ +.++. ..++|++|+|+|.. ...++
T Consensus         5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~~~   82 (336)
T PRK08040          5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASAAY   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHHHH
Confidence            68999986 9999999999998654   444332  22222111111112222 33333 36899999999954 33334


Q ss_pred             hcCccchhhcCCCCCEEEEcCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .   .   .....|..+||.|+
T Consensus        83 ~---~---~~~~~g~~VIDlS~   98 (336)
T PRK08040         83 A---E---EATNAGCLVIDSSG   98 (336)
T ss_pred             H---H---HHHHCCCEEEECCh
Confidence            3   1   22356899999985

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.91  E-value=0.011  Score=47.63  Aligned_cols=87  Identities=14%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhh-----cCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG-----KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~-----~~~dvii~~v~~~~~   71 (173)
                      .+|.|.|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...-     +..+.+     ...|++|-++..+..
T Consensus       193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~  272 (371)
T cd08281         193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPA  272 (371)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHH
Confidence            468899999999999999999998 699999999999888777764221     111111     147999999865444


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +...+       ..++++..++..+
T Consensus       273 ~~~~~-------~~l~~~G~iv~~G  290 (371)
T cd08281         273 LETAY-------EITRRGGTTVTAG  290 (371)
T ss_pred             HHHHH-------HHHhcCCEEEEEc
Confidence            44433       3455565665554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.91  E-value=0.021  Score=42.25  Aligned_cols=110  Identities=12%  Similarity=0.130  Sum_probs=64.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .||.|+|+|.+|+.++++|...|. +++++|.+.=....+..        .|-..+....+.++  +.++-+.+.+... 
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~-  100 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI-  100 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc-
Confidence            689999999999999999999996 68899876322221111        12111111112221  4555555443211 


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       .+.      ..+.+..-++++++.. .+.....+.+...++++.++...
T Consensus       101 -~~~------~~~~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~  142 (197)
T cd01492         101 -SEK------PEEFFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATG  142 (197)
T ss_pred             -ccc------HHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence             111      0112233467777643 46666788888888888887654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.90  E-value=0.022  Score=43.58  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=65.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHc----CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFML----GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      .+|.-+|||. |. ++..+.+.|.. |+++|.++..++...+.    ++...-...+.-...|+|+.... .......+ 
T Consensus       121 ~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~-~~~~~~l~-  196 (250)
T PRK00517        121 KTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANIL-ANPLLELA-  196 (250)
T ss_pred             CEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCc-HHHHHHHH-
Confidence            4788999998 63 44556667764 99999999888765442    33100000000014788876554 23344444 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                        +++...+++|..++-+.. .......+.+.+.+.|...+
T Consensus       197 --~~~~~~LkpgG~lilsgi-~~~~~~~v~~~l~~~Gf~~~  234 (250)
T PRK00517        197 --PDLARLLKPGGRLILSGI-LEEQADEVLEAYEEAGFTLD  234 (250)
T ss_pred             --HHHHHhcCCCcEEEEEEC-cHhhHHHHHHHHHHCCCEEE
Confidence              456677888877765433 33455677777777776544

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.90  E-value=0.0021  Score=52.00  Aligned_cols=62  Identities=11%  Similarity=0.106  Sum_probs=43.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCc-eecC---hhhhhcCCCEEE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGI-RSAS---PMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~-~~~~---~~~~~~~~dvii   63 (173)
                      |++|+|||.|..|..+++...+.|++|.++|.+++.. ..+.+.-+. ..++   ..++++.+|+|.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit   68 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVIT   68 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999999999999999876542 222221111 1122   345567788764

>PLN02427 UDP-apiose/xylose synthase

Probab=96.90  E-value=0.0027  Score=51.41  Aligned_cols=64  Identities=9%  Similarity=0.029  Sum_probs=46.6

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHc-------CCce-------ecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFML-------GGIR-------SASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~~dvii~~v   66 (173)
                      |||.|.| +|.+|+.+++.|++. |++|.+.+|++++.+.+...       +++.       ..+..++++++|+||-+.
T Consensus        15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA   94 (386)
T PLN02427         15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA   94 (386)
T ss_pred             cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence            6899996 699999999999998 59999999987766554322       1111       112345677899999765

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.89  E-value=0.0051  Score=49.02  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+++..|+++....              .++.+..++||+||.++.-+.-+.        
T Consensus       215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~v~--------  272 (345)
T PLN02897        215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNLVR--------  272 (345)
T ss_pred             CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCccC--------
Confidence            57888875 4579999999999999998886432              346777899999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       273 -~d~vk~GavVIDVGin  288 (345)
T PLN02897        273 -GSWLKPGAVVIDVGTT  288 (345)
T ss_pred             -HHHcCCCCEEEEcccc
Confidence             2457899999999764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.89  E-value=0.0044  Score=53.72  Aligned_cols=65  Identities=20%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCceec--------Chh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRSA--------SPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~~--------~~~   53 (173)
                      ++|.|||.|..|...|..|.+.|++|++|++.+.                     ..+.+.+.|+....        +..
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~  390 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS  390 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence            6899999999999999999999999999998763                     23444555654321        234


Q ss_pred             hhhcCCCEEEEecc
Q 044797           54 DAGKDVSALVVVIS   67 (173)
Q Consensus        54 ~~~~~~dvii~~v~   67 (173)
                      ++..+.|.||+++-
T Consensus       391 ~l~~~~DaV~latG  404 (639)
T PRK12809        391 DLTSEYDAVFIGVG  404 (639)
T ss_pred             HHHhcCCEEEEeCC
Confidence            55567899999885

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=96.89  E-value=0.0083  Score=47.90  Aligned_cols=32  Identities=16%  Similarity=0.104  Sum_probs=26.2

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-CeEEEEc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-YKVQAFE   32 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d   32 (173)
                      |++||||.|+|+||..+.+.+.+.. .++.+.+
T Consensus         1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivain   33 (334)
T PRK08955          1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQIN   33 (334)
T ss_pred             CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEec
Confidence            6789999999999999999987654 5765554

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.88  E-value=0.0065  Score=47.57  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=56.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.+..|++++...              .++.+..++||+||+++.-+.-+.        
T Consensus       161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~--------  218 (294)
T PRK14187        161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNFVK--------  218 (294)
T ss_pred             CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccC--------
Confidence            57888864 5679999999999999999887532              356778899999999998654322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       219 -~~~ik~gaiVIDVGin  234 (294)
T PRK14187        219 -YSWIKKGAIVIDVGIN  234 (294)
T ss_pred             -HHHcCCCCEEEEeccc
Confidence             2457899999999754

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.018  Score=43.39  Aligned_cols=146  Identities=8%  Similarity=-0.059  Sum_probs=82.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +.++|||.|..|.+...+....++.+. +..|++++.+.+.+.-+-..-+.+...+-.+++|.-+|+. .+..+.     
T Consensus        11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va-----   84 (289)
T COG5495          11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA-----   84 (289)
T ss_pred             eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH-----
Confidence            579999999999996666555555553 4467888877765532112222333344467888888854 344443     


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee-eeceeeeeecCHh------------------hHHHHHHHHHhh
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY-ILERMFLISSSID------------------CFTYLFLVKNEF  142 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~-v~~~~~~~~g~~~------------------~~~~~~~~~~~~  142 (173)
                      .....+||++++.+|...-   ..+.+.+.+.|..- --.+.|+.+|.++                  -+..++.+...+
T Consensus        85 a~~~~rpg~iv~HcSga~~---~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~em  161 (289)
T COG5495          85 ATSLNRPGTIVAHCSGANG---SGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEM  161 (289)
T ss_pred             HhcccCCCeEEEEccCCCc---hhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHh
Confidence            1233578999999876432   23344444444321 1122333333332                  344567777777


Q ss_pred             CCceeecCCCchHhH
Q 044797          143 FIDKKVNISGQEIHW  157 (173)
Q Consensus       143 g~~~~~g~~Gsg~a~  157 (173)
                      |...++-..+.-..|
T Consensus       162 gg~~f~V~~~~r~lY  176 (289)
T COG5495         162 GGEPFCVREEARILY  176 (289)
T ss_pred             CCCceeechhHHHHH
Confidence            765555555544443

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.85  E-value=0.014  Score=46.68  Aligned_cols=45  Identities=18%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI   47 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~   47 (173)
                      .+|.|.|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~  212 (349)
T TIGR03201       168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD  212 (349)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc
Confidence            468899999999999999999999999999999999888777753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.0047  Score=47.67  Aligned_cols=45  Identities=18%  Similarity=0.093  Sum_probs=38.1

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG   46 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~   46 (173)
                      ++++.|.|+ |.+|.++++.|.+.|++|++.+|++++.+.+.+.++
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~   49 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGL   49 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCc
Confidence            356777776 999999999999999999999999998887766543

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.83  E-value=0.0065  Score=47.43  Aligned_cols=73  Identities=11%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.+..|++++..              +.++.+..+++|+||+++.-+.-+.        
T Consensus       160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~--------  217 (288)
T PRK14171        160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLT--------  217 (288)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccC--------
Confidence            57888975 457999999999999999988743              2356778889999999998554222        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       ...+++|+++||.+..
T Consensus       218 -~~~vk~GavVIDvGin  233 (288)
T PRK14171        218 -AEYFNPESIVIDVGIN  233 (288)
T ss_pred             -HHHcCCCCEEEEeecc
Confidence             2457899999998754

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.013  Score=44.58  Aligned_cols=43  Identities=19%  Similarity=0.172  Sum_probs=36.8

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |++++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus         1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~   44 (257)
T PRK07024          1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA   44 (257)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            667887775 8999999999999999999999999888766543

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.83  E-value=0.022  Score=47.02  Aligned_cols=113  Identities=10%  Similarity=-0.024  Sum_probs=63.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH--HHHHHHcCCceec--ChhhhhcCCCEEEEec--c-Chhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL--VDKFFMLGGIRSA--SPMDAGKDVSALVVVI--S-HVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~~~--~~~~~~~~~dvii~~v--~-~~~~~~~v   75 (173)
                      ++|.|+|.|..|.+.++.|++.|++|+++|..+..  .+.+. .|+....  ...+.+++.|++|..-  | +.+.+...
T Consensus         7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a   85 (438)
T PRK03806          7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAA   85 (438)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHH
Confidence            47999999999999999999999999999975432  23343 3654422  2334466788666543  2 11112211


Q ss_pred             hcC------ccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCce
Q 044797           76 FFG------HEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        76 ~~~------~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ...      +.++...+.+..+| |.-|.++..++.-+...|+..|..
T Consensus        86 ~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~  133 (438)
T PRK03806         86 ADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWK  133 (438)
T ss_pred             HHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            100      01222222233344 333445555566666677665543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.83  E-value=0.008  Score=50.19  Aligned_cols=66  Identities=21%  Similarity=0.220  Sum_probs=49.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCceec--------Chh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRSA--------SPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~~--------~~~   53 (173)
                      .+|.|||.|..|...|..|.+.|++|+++++.+.                     ..+.+.+.|+....        ...
T Consensus       142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~  221 (467)
T TIGR01318       142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLD  221 (467)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHH
Confidence            5899999999999999999999999999997642                     23445556654321        223


Q ss_pred             hhhcCCCEEEEeccC
Q 044797           54 DAGKDVSALVVVISH   68 (173)
Q Consensus        54 ~~~~~~dvii~~v~~   68 (173)
                      +.....|.||+++..
T Consensus       222 ~~~~~~D~vilAtGa  236 (467)
T TIGR01318       222 DLLEDYDAVFLGVGT  236 (467)
T ss_pred             HHHhcCCEEEEEeCC
Confidence            444578999999853

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.82  E-value=0.0074  Score=46.97  Aligned_cols=73  Identities=19%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||- ..+|.+++..|.+.+..|+++...              +.++.+..++||++|+++.-+.-+.        
T Consensus       158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~--------  215 (282)
T PRK14182        158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVK--------  215 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC--------
Confidence            57888864 567999999999999999988643              2346677889999999998543221        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       216 -~~~ik~gaiVIDvGin  231 (282)
T PRK14182        216 -GAWVKEGAVVIDVGMN  231 (282)
T ss_pred             -HHHcCCCCEEEEeece
Confidence             2457899999999754

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.81  E-value=0.019  Score=47.90  Aligned_cols=113  Identities=13%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCc-eecChhhhhcCCCEEEEec--cC-hhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGI-RSASPMDAGKDVSALVVVI--SH-VDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~~dvii~~v--~~-~~~~~~v~~   77 (173)
                      ++|+|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+. ... ......+.+.++|+||..-  |. .+.+.....
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~   85 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKN   85 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHH
Confidence            589999999999999999994 99999999664433222221 111 1111234566789887753  21 122222110


Q ss_pred             ------Cccchh-hcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCce
Q 044797           78 ------GHEGVL-KGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        78 ------~~~~i~-~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~  116 (173)
                            .+-++. ...++..+|--+ |.++..++.-+...|+..|..
T Consensus        86 ~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~  132 (454)
T PRK01368         86 FNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLD  132 (454)
T ss_pred             CCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence                  011222 222222455333 445555566667777665543

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=96.81  E-value=0.009  Score=46.86  Aligned_cols=89  Identities=20%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      |+++| |.|.+|..-|+.|...|..|++...+|=.+-...-.|.+++ +.+|++++.|+++.++-..    +++.  .+-
T Consensus       215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~----dii~--~~H  287 (434)
T KOG1370|consen  215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCK----DIIT--GEH  287 (434)
T ss_pred             cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCc----chhh--HHH
Confidence            56665 99999999999999999999999988754433333476765 5899999999999988632    2232  234


Q ss_pred             hhcCCCCCEEEEcCCCC
Q 044797           83 LKGLQKGAVIILQSTIL   99 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~   99 (173)
                      ...++++.++.+++-..
T Consensus       288 ~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  288 FDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             HHhCcCCcEEecccccc
Confidence            56688888888886543

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.80  E-value=0.0047  Score=48.92  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=49.6

Q ss_pred             CCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHH---HHHc-C-----------CceecChhhhhcCCCEEEEe
Q 044797            2 ASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDK---FFML-G-----------GIRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         2 ~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~---~~~~-g-----------~~~~~~~~~~~~~~dvii~~   65 (173)
                      +++|.|- +.|.+|+.+.+.|+++||.|.+.-|+++..+.   +.+. +           +....+..+++++||.||-+
T Consensus         6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~   85 (327)
T KOG1502|consen    6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT   85 (327)
T ss_pred             CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEe
Confidence            3688888 57999999999999999999999888876322   3332 1           12345677899999999976


Q ss_pred             c
Q 044797           66 I   66 (173)
Q Consensus        66 v   66 (173)
                      .
T Consensus        86 A   86 (327)
T KOG1502|consen   86 A   86 (327)
T ss_pred             C
Confidence            5

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=96.80  E-value=0.0026  Score=44.80  Aligned_cols=104  Identities=15%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      .||++||.  + .++++.|.+.+.++.++|++++....-  .+........+++.+||++++.-.  ..+...+   +.+
T Consensus        12 ~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti---~~i   81 (147)
T PF04016_consen   12 DKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS--TLVNGTI---DDI   81 (147)
T ss_dssp             SEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH---HHH
T ss_pred             CEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee--eeecCCH---HHH
Confidence            58999995  1 137788888889999999999775321  122244566788999999998753  2233333   345


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +...++++.++-.+++.|-    .-+.+...|+.++..
T Consensus        82 L~~~~~~~~vil~GpS~~~----~P~~l~~~Gv~~v~g  115 (147)
T PF04016_consen   82 LELARNAREVILYGPSAPL----HPEALFDYGVTYVGG  115 (147)
T ss_dssp             HHHTTTSSEEEEESCCGGS-----GGGGCCTT-SEEEE
T ss_pred             HHhCccCCeEEEEecCchh----hHHHHHhCCCCEEEE
Confidence            5666667777766554432    234566678776544

; PDB: 3L5O_B 3NPG_A.

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.0057  Score=46.30  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus         1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   43 (257)
T PRK09291          1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALR   43 (257)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            667888886 589999999999999999999999987765543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.80  E-value=0.039  Score=43.22  Aligned_cols=108  Identities=13%  Similarity=0.168  Sum_probs=68.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh---hhhhhcC-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ---IDDIFFG-   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~---~~~v~~~-   78 (173)
                      ++++|||.-.==..+++.|.+.|++|.++.-.... ..+.  |+...++.++.++++|+||+++|...+   ++.++.. 
T Consensus         2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~   78 (287)
T TIGR02853         2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGFT--GAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE   78 (287)
T ss_pred             cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-cccc--cceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence            58999999999999999999999999888644210 1111  566677777789999999999993222   2222211 


Q ss_pred             ----ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           79 ----HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        79 ----~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                          .+++.+.++++.++. ++...+    .+.+.++++|+.+.
T Consensus        79 ~~~l~~~~l~~~~~~~~~~-~G~~~~----~l~~~a~~~gi~v~  117 (287)
T TIGR02853        79 KVVLTPELLESTKGHCTIY-VGISNP----YLEQLAADAGVKLI  117 (287)
T ss_pred             CccccHHHHHhcCCCCEEE-EecCCH----HHHHHHHHCCCeEE
Confidence                123556666655433 332222    33346666787765

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.79  E-value=0.023  Score=42.92  Aligned_cols=88  Identities=16%  Similarity=0.170  Sum_probs=58.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhh-----hcCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDA-----GKDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~-----~~~~dvii~~v~~~~~~   72 (173)
                      .+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|.... +    +..+.     -...|+++.++..+...
T Consensus       136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~  215 (271)
T cd05188         136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETL  215 (271)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHH
Confidence            47889999999999999999999999999999888877766553211 1    11111     23578888887642333


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ...       .+.++++..++..+.
T Consensus       216 ~~~-------~~~l~~~G~~v~~~~  233 (271)
T cd05188         216 AQA-------LRLLRPGGRIVVVGG  233 (271)
T ss_pred             HHH-------HHhcccCCEEEEEcc
Confidence            322       244556666665543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.79  E-value=0.015  Score=43.44  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      ++|.|.| .|.+|..+++.|.++|++|.+.+|++++.+.+
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            4688886 59999999999999999999999998776543

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.79  E-value=0.0031  Score=50.57  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHH-CCCe---EEEE--cCChHHHHHHHHcCCceec-ChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIR-SGYK---VQAF--EISDPLVDKFFMLGGIRSA-SPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~-~g~~---V~~~--d~~~~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      +||+|||. |..|.-+.+.|.+ ..++   +..+  .++..+.-.+......... +.. .+.++|++|+|+|.. ...+
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~-~s~~   83 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGE-VSRQ   83 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChH-HHHH
Confidence            58999986 9999999999985 5566   4333  2332221112111122221 333 347899999999854 3344


Q ss_pred             hhcCccchhhcCCCCCEEEEcCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +.   .   .....|..+||.|+
T Consensus        84 ~~---~---~~~~~G~~VID~Ss  100 (347)
T PRK06728         84 FV---N---QAVSSGAIVIDNTS  100 (347)
T ss_pred             HH---H---HHHHCCCEEEECch
Confidence            43   1   23457889999875

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.78  E-value=0.0099  Score=47.93  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH--------HcCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF--------MLGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~--------~~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|+.++++|...|. +++++|.+.=....+.        +.|-..+....+.++  +.++-+.+.+..-.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~  108 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLT  108 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecC
Confidence            689999999999999999999996 6888887642211111        112111111112121  35555555442111


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .+.       ..+.++.-++|++++-. +.+-..+.+...++++.++...
T Consensus       109 ~~~-------~~~~~~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~  150 (355)
T PRK05597        109 WSN-------ALDELRDADVILDGSDN-FDTRHLASWAAARLGIPHVWAS  150 (355)
T ss_pred             HHH-------HHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence            111       11223455788888653 4444456667777888877654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.77  E-value=0.0053  Score=52.28  Aligned_cols=64  Identities=16%  Similarity=0.087  Sum_probs=45.9

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH---------cC------Cce----ec---ChhhhhcCCC
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM---------LG------GIR----SA---SPMDAGKDVS   60 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~---------~g------~~~----~~---~~~~~~~~~d   60 (173)
                      +|.|.| .|.+|..+++.|++.|++|++++|+.++.+.+.+         .|      +..    ..   +..+++.++|
T Consensus        82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD  161 (576)
T PLN03209         82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS  161 (576)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence            466665 5999999999999999999999999888765432         01      111    11   2334567899


Q ss_pred             EEEEecc
Q 044797           61 ALVVVIS   67 (173)
Q Consensus        61 vii~~v~   67 (173)
                      +||.+..
T Consensus       162 iVVn~AG  168 (576)
T PLN03209        162 VVICCIG  168 (576)
T ss_pred             EEEEccc
Confidence            9998864

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.77  E-value=0.044  Score=44.52  Aligned_cols=111  Identities=13%  Similarity=0.009  Sum_probs=61.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|..|+.+++.|...|. +++++|++.-....+..        .|-..+....+.++  +.++-+...+....
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~  215 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT  215 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            689999999999999999999997 78999987321111111        11111111112221  23333333321110


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       .+.      +.+.++.-++|++++.. +..-..+.+.+.++++.++...
T Consensus       216 -~~~------~~~~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~  257 (376)
T PRK08762        216 -SDN------VEALLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGA  257 (376)
T ss_pred             -hHH------HHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence             111      11223445688887653 4444567777777888877654

>PRK10537 voltage-gated potassium channel; Provisional

Probab=96.76  E-value=0.027  Score=46.04  Aligned_cols=106  Identities=8%  Similarity=0.008  Sum_probs=63.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce---ecChhhh-----hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR---SASPMDA-----GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~---~~~~~~~-----~~~~dvii~~v~~~~~~~~   74 (173)
                      .++-|+|.|.+|..+++.|.+.|.++.+.|.+..  +...+.+...   ..+..+.     +++|+.++.+.+++..-..
T Consensus       241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~  318 (393)
T PRK10537        241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF  318 (393)
T ss_pred             CeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence            3588999999999999999999999999987632  3333333221   1111222     4578999998886554333


Q ss_pred             hhcCccchhhcCCCC-CEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           75 IFFGHEGVLKGLQKG-AVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        75 v~~~~~~i~~~l~~g-~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +..    ....+.|+ +++....  +++.    .+.+++.|...+-.
T Consensus       319 ivL----~ar~l~p~~kIIa~v~--~~~~----~~~L~~~GaD~VIs  355 (393)
T PRK10537        319 VVL----AAKEMSSDVKTVAAVN--DSKN----LEKIKRVHPDMIFS  355 (393)
T ss_pred             HHH----HHHHhCCCCcEEEEEC--CHHH----HHHHHhcCCCEEEC
Confidence            332    12234444 4444433  2332    34555667766543

>PRK06182 short chain dehydrogenase; Validated

Probab=96.75  E-value=0.023  Score=43.63  Aligned_cols=42  Identities=17%  Similarity=0.106  Sum_probs=34.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      +++.|.| .|.+|..+++.|.+.|++|++.+|++++++.+.+.
T Consensus         4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~   46 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL   46 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC
Confidence            4566666 59999999999999999999999999887665543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.74  E-value=0.0038  Score=39.02  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      ||.|||.|..|.-+|..|.+.|.+|+++++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            688999999999999999999999999988754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.018  Score=43.01  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      ++|.|+| .|.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA   47 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence            4687886 599999999999999999999999988766543

>PLN02214 cinnamoyl-CoA reductase

Probab=96.72  E-value=0.0054  Score=48.99  Aligned_cols=66  Identities=14%  Similarity=0.002  Sum_probs=46.1

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHH-----HHHHc--CCc-------eecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVD-----KFFML--GGI-------RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~~~--g~~-------~~~~~~~~~~~~dvii~~v   66 (173)
                      +++|.|.|. |.+|+.+++.|+++|++|++..|+.++..     .+...  .+.       -..+..++++++|+||.+.
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A   89 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTA   89 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEec
Confidence            467888976 99999999999999999999988765421     11110  111       1123445677899999886


Q ss_pred             c
Q 044797           67 S   67 (173)
Q Consensus        67 ~   67 (173)
                      .
T Consensus        90 ~   90 (342)
T PLN02214         90 S   90 (342)
T ss_pred             C
Confidence            4

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.72  E-value=0.02  Score=47.77  Aligned_cols=110  Identities=9%  Similarity=0.057  Sum_probs=69.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|||.|.++..=++.|++.|.+|+++.+.- +.+..+.+.| +....  -..+.++++++||.|+.++..-+.+...
T Consensus        13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i~~~   92 (457)
T PRK10637         13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQRVSEA   92 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhHHHHHH
Confidence            689999999999999999999999999986652 3344444443 22211  1234578899999998765432332210


Q ss_pred             c--cc--------------hhh-cCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797           79 H--EG--------------VLK-GLQKGAVIILQST--ILPSHMQKLEKTFTG  112 (173)
Q Consensus        79 ~--~~--------------i~~-~l~~g~~ii~~st--~~~~~~~~l~~~l~~  112 (173)
                      .  .+              +.+ .++.|.+.+.+||  .+|...+.+.+.+++
T Consensus        93 a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ie~  145 (457)
T PRK10637         93 AEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLES  145 (457)
T ss_pred             HHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            0  00              111 1344777776665  568878877777754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.72  E-value=0.0061  Score=47.85  Aligned_cols=65  Identities=15%  Similarity=0.054  Sum_probs=45.2

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHH---HHHHc-----CCc-------eecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVD---KFFML-----GGI-------RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~---~~~~~-----g~~-------~~~~~~~~~~~~dvii~~v   66 (173)
                      ++|.|.| +|.+|+.+++.|++.|++|++.+|++++..   .+...     .+.       -.....++++++|.||.+.
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   84 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA   84 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence            5788887 799999999999999999998888765432   21111     111       1123456677899998876


Q ss_pred             c
Q 044797           67 S   67 (173)
Q Consensus        67 ~   67 (173)
                      .
T Consensus        85 ~   85 (322)
T PLN02662         85 S   85 (322)
T ss_pred             C
Confidence            3

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.71  E-value=0.02  Score=46.19  Aligned_cols=74  Identities=14%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|.|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+       ..+.+     ...|+++-++..+
T Consensus       187 ~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~  266 (368)
T TIGR02818       187 DTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNV  266 (368)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCH
Confidence            468899999999999999999998 7999999999998887777642211       11111     1589999998754


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ..+.+.+
T Consensus       267 ~~~~~~~  273 (368)
T TIGR02818       267 NVMRAAL  273 (368)
T ss_pred             HHHHHHH
Confidence            4444443

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.021  Score=43.26  Aligned_cols=43  Identities=16%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |.+++.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus         1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~   44 (257)
T PRK07074          1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD   44 (257)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            5667888865 899999999999999999999999887765543

>PLN02740 Alcohol dehydrogenase-like

Probab=96.70  E-value=0.019  Score=46.45  Aligned_cols=74  Identities=18%  Similarity=0.170  Sum_probs=54.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh----c-CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG----K-DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~----~-~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+       ..+.+    . ..|+++-++..+
T Consensus       200 ~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~  279 (381)
T PLN02740        200 SSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNV  279 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence            478899999999999999999998 6999999999999888877642211       11211    1 489999998755


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ..+...+
T Consensus       280 ~~~~~a~  286 (381)
T PLN02740        280 EVLREAF  286 (381)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.69  E-value=0.0078  Score=47.45  Aligned_cols=45  Identities=22%  Similarity=0.192  Sum_probs=36.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGI   47 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~   47 (173)
                      ++++|+|+|-+|+.-.+...+.|++|+++|++..+. +.+...|+.
T Consensus       183 ~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd  228 (360)
T KOG0023|consen  183 KWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD  228 (360)
T ss_pred             cEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc
Confidence            589999999999998899999999999999997444 444446653

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.68  E-value=0.0026  Score=51.55  Aligned_cols=34  Identities=29%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      ++|.|||.|..|..+|..|.+.|++|++++++++
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            4899999999999999999999999999998754

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=96.66  E-value=0.022  Score=44.81  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-cCh-hh----hhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-ASP-MD----AGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~-~~----~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      .+|.|.|+|.+|..+++.+...|++|++.++++++.+.+.+.|.... ... .+    ..+..|+++.++.........+
T Consensus       164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~  243 (330)
T cd08245         164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAAL  243 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHH
Confidence            46889999999999999999999999999999998888766664321 111 01    1235899998876444443333


Q ss_pred             cCccchhhcCCCCCEEEEcC
Q 044797           77 FGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s   96 (173)
                             ..++++..++..+
T Consensus       244 -------~~l~~~G~~i~~~  256 (330)
T cd08245         244 -------GGLRRGGRIVLVG  256 (330)
T ss_pred             -------HhcccCCEEEEEC
Confidence                   4566666776654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.66  E-value=0.025  Score=43.27  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=31.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      .++-|+|.|..+.++++.+...|++|+++|..++
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            4788999999999999999999999999997765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.65  E-value=0.023  Score=45.54  Aligned_cols=88  Identities=13%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-c----Chhh----hh--cCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-A----SPMD----AG--KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-~----~~~~----~~--~~~dvii~~v~~~~   70 (173)
                      .+|.|.|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+... +    +..+    ..  ...|+++-++..+.
T Consensus       178 ~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~  257 (358)
T TIGR03451       178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPE  257 (358)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHH
Confidence            4788999999999999999999985 8999999999888877775321 1    1111    12  24799999987544


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .++..+       ..++++..++..+.
T Consensus       258 ~~~~~~-------~~~~~~G~iv~~G~  277 (358)
T TIGR03451       258 TYKQAF-------YARDLAGTVVLVGV  277 (358)
T ss_pred             HHHHHH-------HHhccCCEEEEECC
Confidence            444333       34566666665543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.026  Score=43.30  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=37.1

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |.+++.|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus         1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~   44 (276)
T PRK06482          1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA   44 (276)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            667788886 6999999999999999999999999887766544

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.64  E-value=0.0084  Score=49.49  Aligned_cols=65  Identities=15%  Similarity=0.259  Sum_probs=47.9

Q ss_pred             CeEEEEeCChh-hHHHHHHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEY-SVDMAASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~m-G~~ia~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~   64 (173)
                      +||+|||.|.. ...+.+.|+..     +.+|..+|.++++.+....        .|    +..+.+.+++++++|+||.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~   80 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN   80 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence            59999999984 22345555533     3589999999988865322        23    3467889999999999999


Q ss_pred             ecc
Q 044797           65 VIS   67 (173)
Q Consensus        65 ~v~   67 (173)
                      ...
T Consensus        81 ~ir   83 (425)
T cd05197          81 QFR   83 (425)
T ss_pred             eee
Confidence            875

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.64  E-value=0.014  Score=47.74  Aligned_cols=111  Identities=10%  Similarity=-0.003  Sum_probs=63.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.|||+|.+|+.++++|...|. +++++|.+.=....+..        .|-..+....+.+.  +.++-+.+.+....
T Consensus        43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~  122 (392)
T PRK07878         43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLD  122 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCC
Confidence            689999999999999999999996 68889876322211111        12111111111111  34555544432111


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .+.       ..+.++.-++|++++- .+..-..+.+.....++.++...
T Consensus       123 ~~~-------~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p~v~~~  164 (392)
T PRK07878        123 PSN-------AVELFSQYDLILDGTD-NFATRYLVNDAAVLAGKPYVWGS  164 (392)
T ss_pred             hhH-------HHHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence            111       1223344578888754 45555567777777888887653

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.63  E-value=0.0032  Score=51.35  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=31.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .+|.|||.|-+|.+.|..|++.|++|+++|+.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            599999999999999999999999999999875

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.024  Score=42.51  Aligned_cols=40  Identities=10%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      +++.|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus         7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   47 (241)
T PRK07454          7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA   47 (241)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4677776 599999999999999999999999987765543

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.026  Score=43.50  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=34.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      ++|.|.| .|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus         5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~   46 (277)
T PRK06180          5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA   46 (277)
T ss_pred             CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence            4577775 5999999999999999999999999988766554

>PRK08643 acetoin reductase; Validated

Probab=96.62  E-value=0.021  Score=43.20  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=34.5

Q ss_pred             CCCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            1 MASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         1 m~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |.+++.|+ |.|.+|..+++.|++.|++|.+.+|++++.+++.
T Consensus         1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~   43 (256)
T PRK08643          1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA   43 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45566666 6889999999999999999999999987765543

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.62  E-value=0.012  Score=45.97  Aligned_cols=73  Identities=21%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHC----CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRS----GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|||-+ .+|.+++..|.+.    +..|+++...              +.++.+.++.||+||+++.-+.-+.    
T Consensus       154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~----  215 (287)
T PRK14181        154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIK----  215 (287)
T ss_pred             CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC----
Confidence            578888754 5799999999888    7888887643              2357777899999999998553221    


Q ss_pred             CccchhhcCCCCCEEEEcCCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~   98 (173)
                           .+.+++|+++||.+..
T Consensus       216 -----~~~ik~GavVIDvGin  231 (287)
T PRK14181        216 -----EEMIAEKAVIVDVGTS  231 (287)
T ss_pred             -----HHHcCCCCEEEEeccc
Confidence                 2467899999999764

>PRK05865 hypothetical protein; Provisional

Probab=96.62  E-value=0.0074  Score=53.82  Aligned_cols=62  Identities=11%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||.|.| .|.+|+.+++.|.+.|++|++++|+....  .. .++.       -..+..++++++|+||.+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--~~-~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa   70 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--WP-SSADFIAADIRDATAVESAMTGADVVAHCAW   70 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--cc-cCceEEEeeCCCHHHHHHHHhCCCEEEECCC
Confidence            4899997 59999999999999999999999875321  11 1111       11234456778999998864

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.60  E-value=0.027  Score=44.60  Aligned_cols=87  Identities=22%  Similarity=0.292  Sum_probs=60.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c--Ch---hhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A--SP---MDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~--~~---~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      .++.|.|+|.+|..+++.+...|.+|++.++++++.+.+.+.|+... +  +.   .+.-...|+++.+++.+......+
T Consensus       171 ~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~  250 (337)
T cd05283         171 KRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDPYL  250 (337)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHHHH
Confidence            46888999999999999999999999999999888887776665321 1  11   112346899999987542233333


Q ss_pred             cCccchhhcCCCCCEEEEcC
Q 044797           77 FGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s   96 (173)
                             ..++++..++..+
T Consensus       251 -------~~l~~~G~~v~~g  263 (337)
T cd05283         251 -------SLLKPGGTLVLVG  263 (337)
T ss_pred             -------HHhcCCCEEEEEe
Confidence                   4556666666654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.60  E-value=0.011  Score=47.51  Aligned_cols=73  Identities=14%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.||| ...+|.+++..|.+.+..|+++...              +.++.+..++||+||.++.-+.-+.        
T Consensus       232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~--------  289 (364)
T PLN02616        232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVR--------  289 (364)
T ss_pred             CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCC--------
Confidence            5778886 4567999999999999999988643              2356778899999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       290 -~d~vK~GAvVIDVGIn  305 (364)
T PLN02616        290 -GSWIKPGAVVIDVGIN  305 (364)
T ss_pred             -HHHcCCCCEEEecccc
Confidence             2457899999998754

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=96.60  E-value=0.02  Score=45.53  Aligned_cols=74  Identities=12%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChh----------hhhc-CCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPM----------DAGK-DVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~----------~~~~-~~dvii~~v~~~~   70 (173)
                      .+++|+|+|.+|.+..+.+...|. .+.+.|.+++|.+...+.|++..-++.          ++.. .+|..|.|+-...
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~  266 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVE  266 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHH
Confidence            368999999999999999999996 688999999999999888876433332          2223 6899999988776


Q ss_pred             hhhhhh
Q 044797           71 QIDDIF   76 (173)
Q Consensus        71 ~~~~v~   76 (173)
                      .+++.+
T Consensus       267 ~~~~al  272 (366)
T COG1062         267 VMRQAL  272 (366)
T ss_pred             HHHHHH
Confidence            666665

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.59  E-value=0.029  Score=42.44  Aligned_cols=41  Identities=17%  Similarity=0.115  Sum_probs=35.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+|.|.| .|.+|..+++.|.+.|++|.+.+|++++.+.+.+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   42 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD   42 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4788886 5999999999999999999999999887766543

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.58  E-value=0.032  Score=43.65  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=59.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhh--hcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA--GKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~--~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      .+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+....+..+.  -...|+++-++.....++..+    
T Consensus       157 ~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~----  232 (319)
T cd08242         157 DKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLELAL----  232 (319)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHHHHH----
Confidence            46888899999999999999999999999999999888887776543333221  135899999876433333332    


Q ss_pred             chhhcCCCCCEEEE
Q 044797           81 GVLKGLQKGAVIIL   94 (173)
Q Consensus        81 ~i~~~l~~g~~ii~   94 (173)
                         ..++++..++.
T Consensus       233 ---~~l~~~g~~v~  243 (319)
T cd08242         233 ---RLVRPRGTVVL  243 (319)
T ss_pred             ---HHhhcCCEEEE
Confidence               34455555544

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.57  E-value=0.013  Score=46.33  Aligned_cols=77  Identities=12%  Similarity=0.013  Sum_probs=51.0

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCC-eEEEE-cCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGY-KVQAF-EISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      .||+|+| .|..|.-+.+.|..+.. ++... .++.     +     . ..+.++.++++|++|+|+|+... .+..   
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~-----~-~~~~~~~~~~~D~vFlalp~~~s-~~~~---   66 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----K-----D-AAERAKLLNAADVAILCLPDDAA-REAV---   66 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----c-----C-cCCHhHhhcCCCEEEECCCHHHH-HHHH---
Confidence            5899995 79999999999998763 44322 2221     1     1 12345666789999999996533 3333   


Q ss_pred             cchhhcCCCCCEEEEcCC
Q 044797           80 EGVLKGLQKGAVIILQST   97 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st   97 (173)
                      .   .....|..|||.|+
T Consensus        67 ~---~~~~~g~~VIDlSa   81 (310)
T TIGR01851        67 S---LVDNPNTCIIDAST   81 (310)
T ss_pred             H---HHHhCCCEEEECCh
Confidence            1   22356889999984

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.57  E-value=0.014  Score=45.74  Aligned_cols=73  Identities=15%  Similarity=0.136  Sum_probs=54.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHC----CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRS----GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.||| ...+|.+++..|.+.    +..|+++...              +.++.+.+++||+||+++.-+.-+.    
T Consensus       162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~----  223 (297)
T PRK14168        162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVK----  223 (297)
T ss_pred             CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccC----
Confidence            5788886 456899999999887    6788887543              2356778899999999997544221    


Q ss_pred             CccchhhcCCCCCEEEEcCCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~   98 (173)
                           .+.+++|+++||.+..
T Consensus       224 -----~~~ik~gavVIDvGin  239 (297)
T PRK14168        224 -----PEWIKPGATVIDVGVN  239 (297)
T ss_pred             -----HHHcCCCCEEEecCCC
Confidence                 2457899999999754

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.55  E-value=0.0039  Score=50.69  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |..+|.|||.|..|...|..|.+.|++|.++++.+.
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            778999999999999999999999999999998764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.0029  Score=52.46  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |.++++|||+|.-|.+.|++|++.|+++++++|+.+
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            357999999999999999999999999999988653

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.53  E-value=0.007  Score=41.07  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecCh---------hhhhc--CCCEEEEeccChhhhhhhhcCccc
Q 044797           13 YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASP---------MDAGK--DVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus        13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~---------~~~~~--~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +|...++.++..|.+|++.++++++.+.+++.|+...-+.         .+...  .+|++|.|+..+..++..+     
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~-----   76 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI-----   76 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH-----
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH-----
Confidence            6777788888899999999999999999988875432111         12222  4777888877554444333     


Q ss_pred             hhhcCCCCCEEEEcCC
Q 044797           82 VLKGLQKGAVIILQST   97 (173)
Q Consensus        82 i~~~l~~g~~ii~~st   97 (173)
                        +.++++..++..+.
T Consensus        77 --~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   77 --KLLRPGGRIVVVGV   90 (130)
T ss_dssp             --HHEEEEEEEEEESS
T ss_pred             --HHhccCCEEEEEEc
Confidence              34455555555543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK05868 hypothetical protein; Validated

Probab=96.53  E-value=0.0038  Score=50.48  Aligned_cols=35  Identities=26%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |++|.|||.|..|..+|..|.++|++|+++++.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            56899999999999999999999999999998764

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.53  E-value=0.033  Score=44.85  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=53.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|.|.|.+|...++.+...|. .|++.++++++.+.+.+.|+...-+       ..+.+     ..+|+|+-++..+
T Consensus       188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~  267 (368)
T cd08300         188 STVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNV  267 (368)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCCh
Confidence            468899999999999999999998 6999999999998887777532111       11211     1489999998754


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ..+...+
T Consensus       268 ~~~~~a~  274 (368)
T cd08300         268 KVMRAAL  274 (368)
T ss_pred             HHHHHHH
Confidence            4444443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.52  E-value=0.03  Score=45.42  Aligned_cols=87  Identities=14%  Similarity=0.109  Sum_probs=56.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCcee-c--Ch---hhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRS-A--SP---MDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~-~--~~---~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.+.|+|.+|...++.....|.+|++.++++++ .+.+.+.|+... +  +.   .+.....|+++-++..+..+...
T Consensus       180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~  259 (375)
T PLN02178        180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPL  259 (375)
T ss_pred             CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHHH
Confidence            36888899999999999999999999888887655 455556676422 1  11   12223579999998754333333


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +       +.++++..++..+
T Consensus       260 ~-------~~l~~~G~iv~vG  273 (375)
T PLN02178        260 F-------SLLKVSGKLVALG  273 (375)
T ss_pred             H-------HhhcCCCEEEEEc
Confidence            3       3345555555443

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.011  Score=49.51  Aligned_cols=64  Identities=8%  Similarity=-0.077  Sum_probs=44.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-H---HHHHHHcCCce-ecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-L---VDKFFMLGGIR-SASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~---~~~~~~~g~~~-~~~~~~~~~~~dvii~~v   66 (173)
                      +||+|+|+|.-|.+.++.|.+.|.+|+++|.++. .   .+++.+.+... .....+.+.++|+||.+-
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp   77 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP   77 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence            5899999999999999999999999999995432 1   12343322111 112235567899888764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.51  E-value=0.0029  Score=51.13  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=42.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v   66 (173)
                      |+|.|.|. |.+|+.+++.|.+.|++|++.+|.+............       ...+...+++++|+||-+.
T Consensus        22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            68999975 9999999999999999999999864321110000111       1112234456789999876

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.51  E-value=0.019  Score=45.74  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             eEEEEeCChhhHHHHHHHHHCC----CeEEEEc
Q 044797            4 KVGFVGLDEYSVDMAASLIRSG----YKVQAFE   32 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d   32 (173)
                      ||||.|+|++|..+.+.+.+.+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            6999999999999999988753    6776554

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.031  Score=42.04  Aligned_cols=39  Identities=18%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      +++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~   46 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV   46 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56777765 9999999999999999999999997765444

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.51  E-value=0.012  Score=51.29  Aligned_cols=65  Identities=18%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH---------------------HHHHHHcCCceec--------Chh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL---------------------VDKFFMLGGIRSA--------SPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~~~--------~~~   53 (173)
                      ++|.|||.|..|...|..|.+.|++|+++++++..                     .+.+...|++...        +.+
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~  273 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE  273 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence            58999999999999999999999999999976431                     2334445654321        223


Q ss_pred             hhhcCCCEEEEecc
Q 044797           54 DAGKDVSALVVVIS   67 (173)
Q Consensus        54 ~~~~~~dvii~~v~   67 (173)
                      +.....|.||+++.
T Consensus       274 ~~~~~~DaVilAtG  287 (652)
T PRK12814        274 ELQKEFDAVLLAVG  287 (652)
T ss_pred             HHHhhcCEEEEEcC
Confidence            33345899999875

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.51  E-value=0.011  Score=50.55  Aligned_cols=66  Identities=21%  Similarity=0.242  Sum_probs=48.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh---------------------HHHHHHHHcCCceec--------Chh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD---------------------PLVDKFFMLGGIRSA--------SPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~---------------------~~~~~~~~~g~~~~~--------~~~   53 (173)
                      ++|.|||.|..|...|..|.+.|++|+++|+.+                     .+++.+.+.|+....        +..
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~  217 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE  217 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence            589999999999999999999999999999642                     334455566754221        122


Q ss_pred             hhhcCCCEEEEeccC
Q 044797           54 DAGKDVSALVVVISH   68 (173)
Q Consensus        54 ~~~~~~dvii~~v~~   68 (173)
                      +.-...|+||+++..
T Consensus       218 ~~~~~~D~Vi~AtG~  232 (564)
T PRK12771        218 QLEGEFDAVFVAIGA  232 (564)
T ss_pred             HHHhhCCEEEEeeCC
Confidence            233468999999864

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.50  E-value=0.011  Score=47.38  Aligned_cols=65  Identities=15%  Similarity=0.034  Sum_probs=45.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |+|.|.| +|.+|+.+++.|++.|++|++.+|++++.+.+.+.     ++..       .....+++++.|.||-+..
T Consensus        11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~   88 (353)
T PLN02896         11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAA   88 (353)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCc
Confidence            6898997 69999999999999999999988887665443221     1111       1123455667898887653

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=96.50  E-value=0.014  Score=48.43  Aligned_cols=111  Identities=8%  Similarity=-0.011  Sum_probs=63.9

Q ss_pred             eEEEEeCChhhH-HHHHHHHHCCCeEEEEcCChH--HHHHHHHcCCcee--cChhhhhcCCCEEEEec--cC-hhhhhhh
Q 044797            4 KVGFVGLDEYSV-DMAASLIRSGYKVQAFEISDP--LVDKFFMLGGIRS--ASPMDAGKDVSALVVVI--SH-VDQIDDI   75 (173)
Q Consensus         4 ~IgiiG~G~mG~-~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v--~~-~~~~~~v   75 (173)
                      +|-|||.|-+|. ++|+.|.+.|++|+++|.++.  ..+.+.+.|++..  .+.....+++|+||.+-  |+ .+.+...
T Consensus         1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a   80 (448)
T TIGR01081         1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAV   80 (448)
T ss_pred             CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHH
Confidence            478999999995 578888999999999997642  2334656676553  23444445789887653  32 2222222


Q ss_pred             hc------Cccchhhc-CCCCC-EEE-EcCCCCHHHHHHHHHHHhcCC
Q 044797           76 FF------GHEGVLKG-LQKGA-VII-LQSTILPSHMQKLEKTFTGNL  114 (173)
Q Consensus        76 ~~------~~~~i~~~-l~~g~-~ii-~~st~~~~~~~~l~~~l~~~g  114 (173)
                      ..      .+.++... ..+.. +|- .-|.++..++.-+...|+..|
T Consensus        81 ~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  128 (448)
T TIGR01081        81 LNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCG  128 (448)
T ss_pred             HHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            11      01123222 22333 453 444555555566666666543

Alternate name: murein tripeptide ligase

>PRK07236 hypothetical protein; Provisional

Probab=96.49  E-value=0.0045  Score=50.14  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      .++|.|||.|..|..+|..|.+.|++|+++++.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            36899999999999999999999999999998753

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.49  E-value=0.014  Score=45.64  Aligned_cols=73  Identities=16%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHH----CCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIR----SGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|||- ..+|.+++..|.+    .+..|+.+..+.              .++.+.+++||+||.++..+.-+.    
T Consensus       158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~----  219 (286)
T PRK14184        158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVT----  219 (286)
T ss_pred             CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCC----
Confidence            57888864 5679999999988    678888887442              246778899999999997554322    


Q ss_pred             CccchhhcCCCCCEEEEcCCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~   98 (173)
                           .+.+++|+++||.+..
T Consensus       220 -----~~~vk~GavVIDVGi~  235 (286)
T PRK14184        220 -----ADMVKPGAVVVDVGIN  235 (286)
T ss_pred             -----HHHcCCCCEEEEeeee
Confidence                 2456899999998753

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.49  E-value=0.03  Score=42.45  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=58.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCc---eecChhhhhc---CCCEEEEe-----cc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGI---RSASPMDAGK---DVSALVVV-----IS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~---~~dvii~~-----v~   67 (173)
                      ++|.-||||  |..++..+++.|..|++.|.+++.++..+..    |+.   ...+.+++..   .-|+|+.+     +|
T Consensus        61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            478889998  5689999999999999999999988765532    333   2233445443   57887764     56


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEc
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQ   95 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~   95 (173)
                      +|..   ++   ....+.++||.+++.+
T Consensus       139 dp~~---~~---~~c~~lvkP~G~lf~S  160 (243)
T COG2227         139 DPES---FL---RACAKLVKPGGILFLS  160 (243)
T ss_pred             CHHH---HH---HHHHHHcCCCcEEEEe
Confidence            5543   33   2355678887766554

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.047  Score=41.91  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      +++.|.| .|.+|..+++.|.+.|++|++.+|++++.+.+.+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   44 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA   44 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC
Confidence            4566665 58999999999999999999999998877665543

>PRK06753 hypothetical protein; Provisional

Probab=96.48  E-value=0.0042  Score=49.91  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |+|.|||.|..|...|..|.+.|++|++++++++
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            5899999999999999999999999999998864

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.48  E-value=0.06  Score=38.35  Aligned_cols=94  Identities=14%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             CeEEEEeC--ChhhHHHHHHHHHCCCeEEEEcCCh----H---HHHHH----HHcC--CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL--DEYSVDMAASLIRSGYKVQAFEISD----P---LVDKF----FMLG--GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~--G~mG~~ia~~l~~~g~~V~~~d~~~----~---~~~~~----~~~g--~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||++||-  +++..+++..+...|.++.++.+..    .   -++..    .+.|  +..+++.+++++++|+|..-.-
T Consensus         3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~~   82 (158)
T PF00185_consen    3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDRW   82 (158)
T ss_dssp             EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEESS
T ss_pred             CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcCc
Confidence            48999993  7999999999999999998886654    1   12111    2224  4677899999999999887654


Q ss_pred             C----hh------hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           68 H----VD------QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        68 ~----~~------~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      -    ..      .+.. +.-..++.+..+++.+|+.+..
T Consensus        83 ~s~~~~e~~~~~~~~~~-y~v~~~~m~~a~~~~i~mH~LP  121 (158)
T PF00185_consen   83 QSMGDKERFKRLEKFKP-YQVTEELMERAKPDAIFMHPLP  121 (158)
T ss_dssp             SCTTSGGHHHHHHHHGG-GSBSHHHHHTSSTT-EEEESSS
T ss_pred             ccccchHHHHHHHHhcC-CccCHHHHHhcCCCcEEEeCCC
Confidence            2    10      1111 1111245556778888888865

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=96.48  E-value=0.0044  Score=50.37  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=32.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCCh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISD   35 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~   35 (173)
                      |+.+|.|||.|-+|.++|..|.+.  |++|+++|+.+
T Consensus         1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            778999999999999999999998  99999999874

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.48  E-value=0.041  Score=43.48  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhh---hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDA---GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~---~~~~dvii~~v~~~~~~~~   74 (173)
                      .+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+... +    +..+.   ....|+++.++..+..+..
T Consensus       165 ~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~  244 (333)
T cd08296         165 DLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAISA  244 (333)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHHHH
Confidence            36888899999999999999999999999999988888877775321 1    11111   2357888887643444443


Q ss_pred             hhcCccchhhcCCCCCEEEEcC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .+       ..++++..++..+
T Consensus       245 ~~-------~~l~~~G~~v~~g  259 (333)
T cd08296         245 LV-------GGLAPRGKLLILG  259 (333)
T ss_pred             HH-------HHcccCCEEEEEe
Confidence            33       4556666666654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.47  E-value=0.0076  Score=48.71  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHH-HCCCe---EEEEcCCh--HHHHHHHHcCCceec-ChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLI-RSGYK---VQAFEISD--PLVDKFFMLGGIRSA-SPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~-~~g~~---V~~~d~~~--~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      ++|+|+|+ |..|.-+.+.++ ...++   +..+....  .+...+......... ...+.++++|++|+|+|.. ..++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~-~s~~   80 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGD-YTNE   80 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHH-HHHH
Confidence            79999986 999999998554 45565   55543321  111112211112221 1123457899999999854 3344


Q ss_pred             hhcCccchhhcCCCC--CEEEEcCC
Q 044797           75 IFFGHEGVLKGLQKG--AVIILQST   97 (173)
Q Consensus        75 v~~~~~~i~~~l~~g--~~ii~~st   97 (173)
                      +.   ..   ....|  ..+||.|+
T Consensus        81 ~~---~~---~~~aG~~~~VID~Ss   99 (369)
T PRK06598         81 VY---PK---LRAAGWQGYWIDAAS   99 (369)
T ss_pred             HH---HH---HHhCCCCeEEEECCh
Confidence            43   11   23457  56888874

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.47  E-value=0.043  Score=44.10  Aligned_cols=87  Identities=15%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|.|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+       ..+.+     ...|+++-++..+
T Consensus       189 ~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~  268 (369)
T cd08301         189 STVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNI  268 (369)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            468899999999999999999998 7999999999998888877542111       11111     1479999988654


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      ..+...+       ..++++ ..++..+
T Consensus       269 ~~~~~~~-------~~~~~~~g~~v~~g  289 (369)
T cd08301         269 DAMISAF-------ECVHDGWGVTVLLG  289 (369)
T ss_pred             HHHHHHH-------HHhhcCCCEEEEEC
Confidence            4444443       344553 4555443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.47  E-value=0.012  Score=53.29  Aligned_cols=65  Identities=25%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCcee--------cChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRS--------ASPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~--------~~~~   53 (173)
                      +||+|||.|.-|.+.|..|.+.||+|++|++.+.                     .++.+.+.|++..        -+.+
T Consensus       307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~  386 (944)
T PRK12779        307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE  386 (944)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence            6899999999999999999999999999997541                     1233444565421        1345


Q ss_pred             hhhc-CCCEEEEecc
Q 044797           54 DAGK-DVSALVVVIS   67 (173)
Q Consensus        54 ~~~~-~~dvii~~v~   67 (173)
                      ++.+ +.|.||+++-
T Consensus       387 ~l~~~~yDAV~LAtG  401 (944)
T PRK12779        387 DLKAAGFWKIFVGTG  401 (944)
T ss_pred             HhccccCCEEEEeCC
Confidence            5544 6899999975

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.45  E-value=0.018  Score=45.10  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHC----CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRS----GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|||- ..+|.+++..|.+.    +..|+++....              .++.+..++||+||+++.-+.-+.    
T Consensus       158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~----  219 (293)
T PRK14185        158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEFVK----  219 (293)
T ss_pred             CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCccC----
Confidence            57888864 46799999999887    57888876432              356777889999999998554322    


Q ss_pred             CccchhhcCCCCCEEEEcCCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~   98 (173)
                           .+.+++|+++||.+..
T Consensus       220 -----~~~vk~gavVIDvGin  235 (293)
T PRK14185        220 -----ADMVKEGAVVIDVGTT  235 (293)
T ss_pred             -----HHHcCCCCEEEEecCc
Confidence                 2457899999999764

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=96.45  E-value=0.014  Score=45.15  Aligned_cols=107  Identities=17%  Similarity=0.082  Sum_probs=65.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHH-HHH------cCCceecChhhhh-cCCCEEEEeccChh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDK-FFM------LGGIRSASPMDAG-KDVSALVVVISHVD   70 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~-~~~------~g~~~~~~~~~~~-~~~dvii~~v~~~~   70 (173)
                      |.+++-+.|.|++|....+.+.++ +++++ +|++++++..+ +.+      .|+...++.+..+ -.+|-++...-.+.
T Consensus         1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~~   80 (350)
T COG3804           1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLPS   80 (350)
T ss_pred             CCceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccch
Confidence            788999999999999887777765 88865 89999887643 222      2455555554433 34444444433231


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC-------CCHHHHHHHHHHHhcCCc
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST-------ILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st-------~~~~~~~~l~~~l~~~g~  115 (173)
                       ++       ++...|+.|.-+|..+.       ..|+..++..+...+.|.
T Consensus        81 -~~-------~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn  124 (350)
T COG3804          81 -VD-------EYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGN  124 (350)
T ss_pred             -HH-------HHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCC
Confidence             22       33445667777776532       345556666666555555

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.45  E-value=0.037  Score=44.05  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-c----Chhh---hh--cCCC-EEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-A----SPMD---AG--KDVS-ALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-~----~~~~---~~--~~~d-vii~~v~~~~   70 (173)
                      .+|.|.|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+... +    +.++   ..  ...| +++-|+..+.
T Consensus       162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~  241 (347)
T PRK10309        162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQ  241 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHH
Confidence            4788999999999999999999987 6889999999888777675321 1    1111   11  1356 7888887544


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .+...+       ..++++..++..+
T Consensus       242 ~~~~~~-------~~l~~~G~iv~~G  260 (347)
T PRK10309        242 TVELAI-------EIAGPRAQLALVG  260 (347)
T ss_pred             HHHHHH-------HHhhcCCEEEEEc
Confidence            444333       4456666665554

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.034  Score=42.03  Aligned_cols=40  Identities=15%  Similarity=0.008  Sum_probs=33.2

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      +++.|. |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   46 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA   46 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            456666 5699999999999999999999999987765543

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.43  E-value=0.046  Score=43.92  Aligned_cols=74  Identities=14%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-c--C----hhhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-A--S----PMDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~--~----~~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... +  +    ..+.+     ...|+++-++..+
T Consensus       186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~  265 (365)
T cd08277         186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNA  265 (365)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence            478889999999999999999998 69999999999888877775321 1  1    11111     2589999998754


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ..+...+
T Consensus       266 ~~~~~~~  272 (365)
T cd08277         266 DLMNEAL  272 (365)
T ss_pred             HHHHHHH
Confidence            4444443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.41  E-value=0.031  Score=43.71  Aligned_cols=107  Identities=20%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--------CCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--------GGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|..+|++|..+|. .++++|.+.-....+..+        |-..+....+.++  +.++-+...... .
T Consensus        20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~-~   98 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP-L   98 (286)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc-C
Confidence            689999999999999999999996 689998764333222111        1111111111111  344444444322 1


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ..+.          +.+-++++++.. .+.....+.+..+++++.++...
T Consensus        99 ~~~~----------l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~  137 (286)
T cd01491          99 TTDE----------LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISAD  137 (286)
T ss_pred             CHHH----------HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEe
Confidence            1111          122346666643 56666778888888888776543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN02650 dihydroflavonol-4-reductase

Probab=96.40  E-value=0.013  Score=46.78  Aligned_cols=65  Identities=23%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH---c-C----C-------ceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM---L-G----G-------IRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~---~-g----~-------~~~~~~~~~~~~~dvii~~v   66 (173)
                      ++|.|.| .|.+|+.+++.|++.|++|++.+|++++.+.+..   . +    +       .-..+..++++++|.||-+.
T Consensus         6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A   85 (351)
T PLN02650          6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA   85 (351)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence            5788886 6999999999999999999988887655443211   0 1    1       11123456677899998775


Q ss_pred             c
Q 044797           67 S   67 (173)
Q Consensus        67 ~   67 (173)
                      .
T Consensus        86 ~   86 (351)
T PLN02650         86 T   86 (351)
T ss_pred             C
Confidence            3

>PRK12320 hypothetical protein; Provisional

Probab=96.39  E-value=0.021  Score=49.98  Aligned_cols=62  Identities=8%  Similarity=-0.023  Sum_probs=44.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----e-cChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----S-ASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~-~~~~~~~~~~dvii~~v~   67 (173)
                      |||.|.| +|.+|+.+++.|.+.|++|++.++++....   ..+++.     . ....+++.++|+||.+.+
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~---~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa   69 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL---DPRVDYVCASLRNPVLQELAGEADAVIHLAP   69 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc---cCCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence            4899997 799999999999999999999998765321   112111     1 123445678999999876

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.39  E-value=0.032  Score=41.86  Aligned_cols=38  Identities=16%  Similarity=0.111  Sum_probs=32.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDK   40 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~   40 (173)
                      ++|.|.| .|.+|..+++.|+++|++|++.+|++++...
T Consensus         7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~   45 (251)
T PRK12826          7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAA   45 (251)
T ss_pred             CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            5787886 7999999999999999999999999766544

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.39  E-value=0.017  Score=47.93  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             CeEEEEeCChhhH-HHHHHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEYSV-DMAASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~-~ia~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~   64 (173)
                      |||+|||.|..=+ .+.+.|...     +-+|+.+|.++++++....        .|    +..+.+.++++++||+||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~   80 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA   80 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence            5999999998622 234555433     3589999999988865322        23    3567889999999999999


Q ss_pred             ecc
Q 044797           65 VIS   67 (173)
Q Consensus        65 ~v~   67 (173)
                      ...
T Consensus        81 ~ir   83 (437)
T cd05298          81 QIR   83 (437)
T ss_pred             Eee
Confidence            875

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.39  E-value=0.046  Score=41.63  Aligned_cols=41  Identities=12%  Similarity=0.115  Sum_probs=33.8

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      +++.|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus         7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   48 (263)
T PRK06200          7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ   48 (263)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3455554 5889999999999999999999999888776654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.39  E-value=0.0055  Score=49.77  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=33.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |..+|.|||.|..|..+|..|.+.|++|.++++.+.
T Consensus         1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            678999999999999999999999999999998864

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.041  Score=42.93  Aligned_cols=41  Identities=20%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      +++.|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4566665 5999999999999999999999999887765543

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.013  Score=43.38  Aligned_cols=64  Identities=13%  Similarity=0.033  Sum_probs=43.9

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--CCce-------ecChhhhhc---CCCEEEEec
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--GGIR-------SASPMDAGK---DVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-------~~~~~~~~~---~~dvii~~v   66 (173)
                      ++++.|.| .|.+|..+++.|++. ++|++.+|++++.+.+.+.  ++..       ..+..++++   ..|.||.+.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~a   79 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNA   79 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence            45677775 699999999999999 9999999998876655432  2211       112223333   478888775

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.37  E-value=0.0057  Score=47.58  Aligned_cols=63  Identities=13%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH---H-c--CCceecChhhhhcCC-CEEEEec
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF---M-L--GGIRSASPMDAGKDV-SALVVVI   66 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~---~-~--g~~~~~~~~~~~~~~-dvii~~v   66 (173)
                      +|.|.| .|.+|+.+++.|.+.|++|.+.+|.+.+.....   + .  .........+..+.. |.|+.+.
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a   72 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA   72 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence            588898 599999999999999999999999876654332   0 0  111112233445555 8888765

>PRK07411 hypothetical protein; Validated

Probab=96.37  E-value=0.027  Score=46.07  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      .+|.|||+|.+|+.++++|...|. +++++|.+.
T Consensus        39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            589999999999999999999996 688888753

>PLN02686 cinnamoyl-CoA reductase

Probab=96.37  E-value=0.012  Score=47.50  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      +++|.|.| .|.+|+.+++.|++.|++|.+..|+.++.+.+
T Consensus        53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l   93 (367)
T PLN02686         53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL   93 (367)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            36787785 59999999999999999999888876655443

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.049  Score=43.42  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=33.0

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      ++.|.|+ |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus         9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~   48 (330)
T PRK06139          9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA   48 (330)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4556665 89999999999999999999999998876554

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.35  E-value=0.0055  Score=48.28  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      .+|.|||+|.-|..+|..|.++|++|.+++++++
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            4799999999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.34  E-value=0.0084  Score=47.93  Aligned_cols=33  Identities=9%  Similarity=0.012  Sum_probs=29.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||.|.| +|.+|+.+++.|++.|++|+++||..
T Consensus        16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            6898996 59999999999999999999999854

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.34  E-value=0.041  Score=44.24  Aligned_cols=87  Identities=17%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-HHHcCCceec---C---hhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-FFMLGGIRSA---S---PMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~~~~---~---~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|.|+|.+|...++.+...|.+|++.+.++++... +.+.|+...-   +   ..+.....|++|-++..+..+.+.
T Consensus       185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~  264 (360)
T PLN02586        185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGPL  264 (360)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHHH
Confidence            36888999999999999999999998888777665443 3455653221   1   112223579999988754444333


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +       ..++++..++..+
T Consensus       265 ~-------~~l~~~G~iv~vG  278 (360)
T PLN02586        265 L-------GLLKVNGKLITLG  278 (360)
T ss_pred             H-------HHhcCCcEEEEeC
Confidence            3       4456666666554

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.34  E-value=0.0056  Score=49.85  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=33.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |..||.|||.|.-|..+|..|.++|++|.++++.++
T Consensus         1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            567999999999999999999999999999998764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.33  E-value=0.0056  Score=49.87  Aligned_cols=35  Identities=23%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |..+|.|||.|..|.++|..|.++|++|+++++.+
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            56689999999999999999999999999999875

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.048  Score=40.93  Aligned_cols=39  Identities=13%  Similarity=0.101  Sum_probs=33.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      +++.|.| .|.+|..+++.|.+.|++|.+.+|++++.+.+
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL   47 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            5677776 59999999999999999999999998876554

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=96.30  E-value=0.046  Score=42.99  Aligned_cols=87  Identities=13%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCce-ecC----hh--h--hhcCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIR-SAS----PM--D--AGKDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~-~~~----~~--~--~~~~~dvii~~v~~~~~~   72 (173)
                      .+|.|+|.|.+|..+++.+...|.+ |.+.++++++.+.+.+.|+.. ...    ..  .  .-+..|+++-++..+...
T Consensus       161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~  240 (334)
T cd08234         161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTL  240 (334)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHH
Confidence            4788889999999999999999987 888999999888776666421 111    10  0  124589999988643333


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ...+       ..++++..++..+
T Consensus       241 ~~~~-------~~l~~~G~~v~~g  257 (334)
T cd08234         241 EQAI-------EYARRGGTVLVFG  257 (334)
T ss_pred             HHHH-------HHHhcCCEEEEEe
Confidence            3332       3455555666554

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.30  E-value=0.048  Score=42.82  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhh-hhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMD-AGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~-~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .++.|.|+|.+|..+++.+...|.+|++.++++++.+.+.+.|+....+..+ .-+..|+++.+.+.....+.++     
T Consensus       169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~~~~-----  243 (329)
T cd08298         169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGALVPAAL-----  243 (329)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHHHHHHHH-----
Confidence            3688889999999999999999999999999888888776667643222221 1235788888765443443333     


Q ss_pred             hhhcCCCCCEEEEcC
Q 044797           82 VLKGLQKGAVIILQS   96 (173)
Q Consensus        82 i~~~l~~g~~ii~~s   96 (173)
                        ..++++..++..+
T Consensus       244 --~~l~~~G~~v~~g  256 (329)
T cd08298         244 --RAVKKGGRVVLAG  256 (329)
T ss_pred             --HHhhcCCEEEEEc
Confidence              4555555555543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK14851 hypothetical protein; Provisional

Probab=96.29  E-value=0.027  Score=49.20  Aligned_cols=112  Identities=11%  Similarity=-0.011  Sum_probs=63.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|+|+|+|.+|+.++..|...|. +++++|.+.=....+..        .|-..+.-..+.+.  +.++-|.+.+..-.
T Consensus        44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~  123 (679)
T PRK14851         44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGIN  123 (679)
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            589999999999999999999996 67778765322111111        12111111122221  34555555442211


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       .+      .+.+.+..-++|+|+.... ......+.+....+++.++..+
T Consensus       124 -~~------n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g  167 (679)
T PRK14851        124 -AD------NMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG  167 (679)
T ss_pred             -hH------HHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence             11      1122334457888887542 3344567777777888887654

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.28  E-value=0.057  Score=40.60  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=32.3

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEE-cCChHHHHHH
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAF-EISDPLVDKF   41 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~-d~~~~~~~~~   41 (173)
                      |+++|.|.| .|.+|..+++.|++.|++|.+. .|++++.+.+
T Consensus         1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~   43 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEET   43 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            778888885 5789999999999999998765 5666655443

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.055  Score=43.12  Aligned_cols=39  Identities=18%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      +|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus        10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~   49 (334)
T PRK07109         10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA   49 (334)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            455665 599999999999999999999999988776543

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.27  E-value=0.021  Score=47.06  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=47.2

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-----CCeEEEEcCC-hHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-----GYKVQAFEIS-DPLVDKFFM--------LG----GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-----g~~V~~~d~~-~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii   63 (173)
                      +||.|||.|..-++ +.+.|+..     +-++..+|.+ +++++....        .+    +..+.+.+++++++|+||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi   80 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF   80 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence            59999999997543 34555542     2589999999 888754221        23    345778999999999999


Q ss_pred             Eecc
Q 044797           64 VVIS   67 (173)
Q Consensus        64 ~~v~   67 (173)
                      ++..
T Consensus        81 ~~~~   84 (419)
T cd05296          81 TQIR   84 (419)
T ss_pred             EEEe
Confidence            9874

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
3pef_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		6e-07
2i9p_A	319	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		5e-06
2gf2_A	296	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		6e-06
1yb4_A	295	Crystal Structure Of The Tartronic Semialdehyde Red		9e-06
3pdu_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		8e-05

>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%)
Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K GF+GL      MA +L+++G  V  +  S    ++   LG  R+A+P +  +      
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            +++     +++ FG  GVL+G+ +G   +  ST+ P+  Q++
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRI 105

>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%)
Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++ 
Sbjct: 25  VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 65  VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           ++       + + G  G+LK ++KG+++I  STI P+  ++L K
Sbjct: 85  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 128

>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%)
Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++ 
Sbjct: 3   VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 65  VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           ++       + + G  G+LK ++KG+++I  STI P+  ++L K
Sbjct: 63  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 106

>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 2   ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSA 61
           A K+GF+GL       A +L R+G+++    I  P+ D+   LG +   +     +    
Sbjct: 3   AXKLGFIGLGIXGSPXAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADI 61
Query: 62  LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQK 105
           + + +    Q++D+ FG  G  K   +G  I+  S+I P   ++
Sbjct: 62  IFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKR 105

>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 6  GFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV 65
          GF+GL      MAA+L+R+G+ V  +  +         LG  +++SP +        + +
Sbjct: 5  GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
          ++      ++ FG  GVL+G+  G   I  ST+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTV 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	8e-17
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	8e-16
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	7e-15
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	7e-14
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	2e-13
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	3e-12
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	6e-12
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	9e-12
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	2e-11
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	3e-11
3qha_A	296	Putative oxidoreductase; seattle structural genomi	6e-11
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	7e-11
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	3e-08
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	2e-07
4ezb_A	317	Uncharacterized conserved protein; structural geno	1e-06
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	2e-06
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	8e-05

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score = 74.9 bits (185), Expect = 8e-17
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-SPMDAGKDVSAL 62
            VG VGL    +  A S +R+G      +++          G   +A S  +    V AL
Sbjct: 9   HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDAL 68

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           V+++ +  Q+  + FG +GV   ++ G+ +++ STI  +  Q++  
Sbjct: 69  VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA 114

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score = 72.2 bits (178), Expect = 8e-16
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 1   MAS--KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
           M    K+GF+GL      MA +L++ G  V AF++ +  V      G     +       
Sbjct: 1   MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAA 60

Query: 59  VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
              +   + +   ++ +  G  GVL   + G VI+  S++ PS   K+ K
Sbjct: 61  SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK 110

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 28/105 (26%), Positives = 54/105 (51%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
            VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++
Sbjct: 2   PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRII 61

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
            ++       + + G  G+LK ++KG+++I  STI P+  ++L K
Sbjct: 62  TMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 106

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 23/109 (21%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M  KVGF+GL      M+ +L+++GY +   + +   +      G   +++     +   
Sbjct: 4   MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCD 63

Query: 61  ALVVVISHV---DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
              V+I+ +     + ++  G  G+++G + G V+I  S+I P   +++
Sbjct: 64  ---VIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREI 109

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 27/103 (26%), Positives = 53/103 (51%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K GF+GL      MA +L+++G  V  +  S    ++   LG  R+A+P +  +      
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTF 62

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            +++     +++ FG  GVL+G+ +G   +  ST+ P+  Q++
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRI 105

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M    GF+GL      MAA+L+R+G+ V  +  +         LG  +++SP +      
Sbjct: 1   MT-TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACD 59

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
             + +++      ++ FG  GVL+G+  G   I  ST+       +
Sbjct: 60  ITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAI 105

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 25/103 (24%), Positives = 46/103 (44%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           +VGF+GL      M+ +L+++G+KV  +  +    D+    G     SP +  K     +
Sbjct: 23  EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            ++S       + F   GVL+ + +G   I  ST+      K+
Sbjct: 83  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKI 125

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
            A K+ F+G     + MA  L  +GY +Q +  +         LG         A +D  
Sbjct: 30  YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDAD 89

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            +V ++ +   + D+ F  +GV   ++ G++ +  ++I P   +  
Sbjct: 90  IVVSMLENGAVVQDVLFA-QGVAAAMKPGSLFLDMASITPREARDH 134

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 23/103 (22%), Positives = 44/103 (42%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+GF+GL      + ++L++ G+ V  +  +    D F   G     +P +         
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
             +S      D+  G  GVL+G++ G   +  ST+    + +L
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTEL 134

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+G++GL      MA  +      V  ++I    +      G   + S  D     +A +
Sbjct: 17  KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADV---AAADL 73

Query: 64  VVISHVD--QIDDIFFGHEGVLKGLQKGAVIILQSTILPS 101
           + I+ +D  Q+ ++      +    + G VI + STI  +
Sbjct: 74  IHITVLDDAQVREVVG---ELAGHAKPGTVIAIHSTISDT 110

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score = 58.3 bits (142), Expect = 7e-11
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+GF+GL      MA +L R+G+++    I  P+ D+   LG +   +     +    + 
Sbjct: 5   KLGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADIIF 63

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
           +++    Q++D+ FG  G  K   +G  I+  S+I P   ++ 
Sbjct: 64  IMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRF 106

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS----DPLVDKFFMLGGIRSASPMDAG 56
               V  +GL      MA  L++ G +V  +  S      LV      G     S   A 
Sbjct: 8   FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA----GAHLCESVKAAL 63

Query: 57  KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
               A + V+       ++  G  GV + L     I+  +T        L+ 
Sbjct: 64  SASPATIFVLLDNHATHEV-LGMPGVARAL-AHRTIVDYTTNAQDEGLALQG 113

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
           M  KV F+GL      MA  L R    +      +  +      G    A P++   +  
Sbjct: 1   ME-KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEAR 57

Query: 61  ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
              V+ + +    +++   E +   L++G   +  ++  P   ++L
Sbjct: 58  ---VIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRL 100

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 11/119 (9%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEI------SDPLVDKFFMLGGIRSASPM 53
           M + + F+G  E +  +A  L      ++ A+++      +   +       G+     +
Sbjct: 23  MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDV 82

Query: 54  DAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112
                ++   VV+S V                L   AV I  +++ P            
Sbjct: 83  AG---IACADVVLSLVVG-AATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIAT 137

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 4   KVGFVGLDEYSVDMAASLIRSG-YKVQAFEI--SDPLVDKFFMLGGIRSASPMDAGKDVS 60
           K+GF+G  E +  +A+ L ++G   + A++   ++    +   LG    AS  +   +  
Sbjct: 26  KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECD 85

Query: 61  ALVVVIS------HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
              V+ S       ++               L +GA+    ++  P+  + +    +
Sbjct: 86  ---VIFSLVTAQAALEVAQ-------QAGPHLCEGALYADFTSCSPAVKRAIGDVIS 132

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 6/109 (5%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           +VGF+G  E +  +A+ L   G +V                    + +  +       ++
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112
             ++    +         V        + +  + I P  ++        
Sbjct: 62  SAVTPGVALGAARRAGRHV------RGIYVDINNISPETVRMASSLIEK 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	100.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	100.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.96
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.96
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.96
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.96
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.96
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.96
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.96
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.95
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.95
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.95
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.94
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.94
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.93
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.93
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.93
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.92
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.92
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.92
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.92
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.92
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.91
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.91
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.9
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.9
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.9
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.89
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.89
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.87
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.86
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.86
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.86
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.86
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.86
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.86
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.85
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.85
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.85
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.84
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.83
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.83
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.83
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.83
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.82
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.81
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.81
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.81
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.8
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.8
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.8
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.79
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.79
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.79
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.79
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.79
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.78
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.76
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.76
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.76
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.61
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.75
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.74
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.74
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.73
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.72
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.71
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.7
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.69
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.69
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.68
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.68
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.66
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.66
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.65
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.64
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.64
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.63
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.63
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.63
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.63
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.63
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.62
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.62
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.62
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.62
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.62
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.61
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.61
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.61
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.61
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.61
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.61
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.6
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.59
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.59
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.59
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.58
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.58
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.58
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.57
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.56
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.56
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.56
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.55
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.55
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.55
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.53
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.53
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.53
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.52
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.52
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.51
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.51
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.51
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.49
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.49
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.46
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.46
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.43
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.43
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.42
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.4
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.34
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.34
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.34
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.33
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	99.33
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.32
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.32
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.32
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.31
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.31
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.31
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.31
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.3
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.29
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.29
2duw_A	145	Putative COA-binding protein; ligand binding prote	99.29
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.29
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.28
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.28
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.27
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.25
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.24
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.24
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.22
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.22
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.22
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	99.21
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.19
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.18
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	99.17
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.17
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	99.17
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	99.16
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	99.15
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	99.15
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.14
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.14
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.14
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.12
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.12
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.11
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.11
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.1
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.08
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.08
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	99.06
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	99.06
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.05
4had_A	350	Probable oxidoreductase protein; structural genomi	99.04
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.04
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.03
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.03
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.03
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	99.02
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.02
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.02
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.01
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.01
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.01
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	99.01
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.99
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.99
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.99
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.99
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.98
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.98
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.98
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.97
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.97
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.97
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.97
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.96
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.95
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.94
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.93
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.93
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.93
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.93
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.93
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.92
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.91
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.91
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.9
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.9
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.9
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.89
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.87
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.87
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.85
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.84
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.83
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.83
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.82
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.8
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.79
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.78
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.76
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.75
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.73
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.73
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.73
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.73
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.72
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.71
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.7
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.7
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.69
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.68
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.68
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.64
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.62
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.62
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.62
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.61
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.6
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.59
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.59
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.59
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.59
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.58
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.58
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.58
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.58
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	98.57
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.57
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.57
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.55
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.54
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.53
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.52
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.51
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.5
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.49
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	98.48
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.46
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.45
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.44
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.44
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	98.44
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.42
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.42
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.42
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.4
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.39
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.36
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.36
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.35
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.34
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.34
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	98.34
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	98.33
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	98.33
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.33
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.32
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	98.28
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.26
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	98.26
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.26
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.25
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.25
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.25
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	98.25
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.24
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.24
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	98.23
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.22
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.21
4g65_A	461	TRK system potassium uptake protein TRKA; structur	98.2
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	98.19
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	98.19
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.19
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.17
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.16
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.16
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.16
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	98.16
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.12
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.1
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.09
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.08
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.07
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.07
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.06
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	98.05
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.05
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.03
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.03
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	98.02
1lnq_A	336	MTHK channels, potassium channel related protein;	98.01
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	98.01
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	98.0
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.99
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.93
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.92
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.91
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.91
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.9
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.89
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.87
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.83
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.82
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.8
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.79
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.78
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.75
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.72
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.72
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.71
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.69
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	97.69
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.68
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.68
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.66
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.65
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.64
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.64
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.64
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.64
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.63
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.62
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.61
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.61
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	97.61
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.61
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.6
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.6
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.6
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.59
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.59
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.59
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.59
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.58
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.58
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.57
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.56
2csu_A	457	457AA long hypothetical protein; structural genomi	97.56
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.55
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.54
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	97.54
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.54
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.53
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.52
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	97.52
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.52
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.5
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.5
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.49
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.48
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	97.48
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	97.47
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.46
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.46
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.44
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.44
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.43
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.43
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.43
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.42
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.41
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.4
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.4
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.4
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.39
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.39
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.38
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.37
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.36
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.35
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	97.34
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.33
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.33
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.33
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.33
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	97.32
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.3
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.3
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.29
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	97.29
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.28
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.27
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.27
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	97.26
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.25
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.25
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.24
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.24
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.24
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.23
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.22
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.21
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.2
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.2
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.2
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.19
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.18
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.17
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.15
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.14
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.14
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.12
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.12
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.11
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.11
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.1
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	97.1
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.08
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.08
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.07
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.07
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.05
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.05
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	97.05
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.03
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.03
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.03
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	97.01
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.01
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.01
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.01
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.0
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.99
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.99
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.99
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.99
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.98
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.98
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.98
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.98
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.97
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.97
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.96
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	96.96
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.96
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.96
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.95
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	96.94
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.93
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.93
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.92
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.91
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.91
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.91
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.91
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.9
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.9
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.89
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.88
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.88
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.88
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.85
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.85
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.84
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.84
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	96.84
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.83
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.83
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.82
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.82
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.82
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.82
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.82
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.82
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.82
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.82
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.82
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	96.81

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=100.00  E-value=1.8e-36  Score=235.76  Aligned_cols=168  Identities=16%  Similarity=0.306  Sum_probs=155.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |+||||||+|+||.+||++|+++||+|++|||++++.+.+.+.|++.++++.|+++++|+||+|+|++++++++++++++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999987778


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.+++|+++||+||++|.+.+++.+.++++|++|++++             +++++|+++++++++|+|+.+|. +.|
T Consensus        83 ~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~  162 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH  162 (300)
T ss_dssp             STTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEE
Confidence            9999999999999999999999999999999999999875             77899999999999999999995 679


Q ss_pred             ecCCCchHhHhHHhHhhhHhhhh
Q 044797          148 VNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +|+.|+|.. .++++|+++-++.
T Consensus       163 ~G~~G~g~~-~Kl~~N~l~~~~~  184 (300)
T 3obb_A          163 AGPDGAGQV-AKVCNNQLLAVLM  184 (300)
T ss_dssp             EESTTHHHH-HHHHHHHHHHHHH
T ss_pred             eCCccHHHH-HHHHHHHHHHHHH
Confidence            999999966 5788888876554

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=100.00  E-value=3.2e-33  Score=217.36  Aligned_cols=167  Identities=18%  Similarity=0.239  Sum_probs=144.2

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |+.||||||+|+||.+||++|+++||+|++|||++++.+++.+.|+..++++.++++++|+||+|+|++.++++++.  .
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~--~   81 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS--M   81 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSC--H
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHH--H
Confidence            77899999999999999999999999999999999999999999999999999999999999999999888888774  3


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ce
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DK  146 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~  146 (173)
                      ++.+.+++++++||+||++|.+.+++.+.+.++|++|++.+             +++++|+++.+++++|+|+.+|. +.
T Consensus        82 ~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~  161 (297)
T 4gbj_A           82 ELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVF  161 (297)
T ss_dssp             HHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeE
Confidence            47788899999999999999999999999999999999865             67889999999999999999997 45


Q ss_pred             eec-CCCchHhHhHHhHhhhHhhhh
Q 044797          147 KVN-ISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       147 ~~g-~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      |+| ..|+|.. .++++|.++-++.
T Consensus       162 ~~g~~~G~g~~-~Kl~~N~~~~~~~  185 (297)
T 4gbj_A          162 DFGDDPGAANV-IKLAGNFMIACSL  185 (297)
T ss_dssp             ECCSCTTHHHH-HHHHHHHHHHHHH
T ss_pred             EecCCccHHHH-HHHHHHHHHHHHH
Confidence            787 5799966 6688888876543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.96  E-value=3.9e-28  Score=189.73  Aligned_cols=167  Identities=20%  Similarity=0.245  Sum_probs=149.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ||||+|||+|.||.+++++|.++|++|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.+++++++++++
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~  100 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGG  100 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchh
Confidence            47999999999999999999999999999999999999999889998999999999999999999988889999876667


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.++++++++++|+..|.+.+++.+.+.+.|++|++.+             +++++++++.++.++++++.+|. +.+
T Consensus       101 l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~  180 (310)
T 3doj_A          101 VLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFY  180 (310)
T ss_dssp             GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEE
Confidence            8889999999999999999999999999988999998753             56788999999999999999995 568


Q ss_pred             ecCCCchHhHhHHhHhhhHhhh
Q 044797          148 VNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      +|..|+|.. .+++.|.+...+
T Consensus       181 ~g~~g~a~~-~Kl~~N~~~~~~  201 (310)
T 3doj_A          181 LGQVGNGAK-MKLIVNMIMGSM  201 (310)
T ss_dssp             CSSTTHHHH-HHHHHHHHHHHH
T ss_pred             eCCcCHHHH-HHHHHHHHHHHH
Confidence            899999965 567788875443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.96  E-value=2.4e-28  Score=188.86  Aligned_cols=167  Identities=20%  Similarity=0.276  Sum_probs=148.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |+||+|||+|+||.+++++|.++|++|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.+++++++++++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~   80 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG   80 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence            46899999999999999999999999999999999999998889998899999999999999999988789999876567


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.++++++++++|+..|.+.+++.+.+.++|++|++.+             +++++++++.++.++++++.+|. +.+
T Consensus        81 l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  160 (287)
T 3pdu_A           81 VLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLH  160 (287)
T ss_dssp             GGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEE
T ss_pred             hhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEE
Confidence            8888999999999999999999999999988999998653             56788999999999999999996 568


Q ss_pred             ecCCCchHhHhHHhHhhhHhhh
Q 044797          148 VNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      +|..|+|... +++.|.+...+
T Consensus       161 ~g~~g~~~~~-Kl~~N~~~~~~  181 (287)
T 3pdu_A          161 LGEVGQGARM-KLVVNMIMGQM  181 (287)
T ss_dssp             CSSTTHHHHH-HHHHHHHHHHH
T ss_pred             cCCCChHHHH-HHHHHHHHHHH
Confidence            8999999775 56777765443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=7.8e-28  Score=187.39  Aligned_cols=165  Identities=21%  Similarity=0.276  Sum_probs=145.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-ecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-SASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      +|||+|||+|.||.+++++|.++|++|++|||++++.+.+.+.|... +.++.++++++|+||+|+|++.+++.++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            47899999999999999999999999999999999999999888887 88899999999999999998888899886555


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ce
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DK  146 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~  146 (173)
                      ++.+.++++++++++|+..|.+.+++.+.+.+.|++|++.+             .++++++++.++.++++++.+|. +.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~  166 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVY  166 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEE
Confidence            78888999999999999999999999999988899998653             56778899999999999999996 56


Q ss_pred             eecC-CCchHhHhHHhHhhhHh
Q 044797          147 KVNI-SGQEIHWGYLKINYFIR  167 (173)
Q Consensus       147 ~~g~-~Gsg~a~~~~~~~~~~~  167 (173)
                      +++. .|+|... ++++|.+..
T Consensus       167 ~~~~~~g~a~~~-Kl~~N~~~~  187 (303)
T 3g0o_A          167 RISDTPGAGSTV-KIIHQLLAG  187 (303)
T ss_dssp             EEESSTTHHHHH-HHHHHHHHH
T ss_pred             ECCCCCcHHHHH-HHHHHHHHH
Confidence            8898 8999764 566777653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.96  E-value=8.4e-28  Score=191.02  Aligned_cols=162  Identities=12%  Similarity=0.094  Sum_probs=145.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCC---CEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDV---SALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~---dvii~~v~~~~~~~~v~~~~   79 (173)
                      |||+|||+|.||.++|++|.++|++|++|||++++.+.+.+.|+..+.+++++++++   |+||+|+|++ ++++++   
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl---   98 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML---   98 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH---
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH---
Confidence            799999999999999999999999999999999999999988988888999999888   9999999976 888888   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhC----
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFF----  143 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g----  143 (173)
                      +++.+.++++++|+|++++.|.+.+++.+.+.++|++|++.+            .++++|++++++.++++++.+|    
T Consensus        99 ~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~lg~~~~  178 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGIG  178 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHHSCCGG
T ss_pred             HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHhccccc
Confidence            578889999999999999999999999999999999998764            5888999999999999999999    


Q ss_pred             -----------------CceeecCCCchHhHhHHhHhhhHhhh
Q 044797          144 -----------------IDKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       144 -----------------~~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                                       ...++|+.|+|-. .+++.|.++-++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~-~Kl~~n~l~~~~  220 (358)
T 4e21_A          179 AAPRTPGREKREGTAELGYLHCGPSGAGHF-VKMVHNGIEYGL  220 (358)
T ss_dssp             GSCCCTTGGGCCSSGGGTEEEEESTTHHHH-HHHHHHHHHHHH
T ss_pred             cCcccccccccccccccceEEECCccHHHH-HHHHHHHHHHHH
Confidence                             4678999999965 567777665443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.96  E-value=6.8e-28  Score=187.25  Aligned_cols=163  Identities=13%  Similarity=0.166  Sum_probs=146.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++||+|||+|.||.+++++|.++|++|++|||++++.+.+.+.|+..+++++++++ +|+||+|+|++.++++++   ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~~   90 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---GE   90 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---HH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---HH
Confidence            46899999999999999999999999999999999999999999999999999999 999999999888888888   57


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.++++++++++|+..|.+.+++.+.+.+.|++|++.+             .++++++++.++.++++++.+|. +.+
T Consensus        91 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  170 (296)
T 3qha_A           91 LAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIH  170 (296)
T ss_dssp             HHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEE
Confidence            8888999999999999999999999999988899998653             67788999999999999999996 668


Q ss_pred             ecCCCchHhHhHHhHhhhHhhh
Q 044797          148 VNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      +|..|+|-. .+++.|.+...+
T Consensus       171 ~g~~g~a~~-~Kl~~N~~~~~~  191 (296)
T 3qha_A          171 AGEPGAGTR-MKLARNMLTFTS  191 (296)
T ss_dssp             EESTTHHHH-HHHHHHHHHHHH
T ss_pred             cCChhHHHH-HHHHHHHHHHHH
Confidence            999999866 557788776543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.96  E-value=2.3e-27  Score=186.11  Aligned_cols=166  Identities=16%  Similarity=0.248  Sum_probs=147.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +|||+|||+|.||.+++++|.++|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+++.++.++ +
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~  109 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-G  109 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-C
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-h
Confidence            469999999999999999999999999999999999999998899999999999999999999999888899988543 6


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCceee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                      +.+.++++++|+++|++.|.+.+++.+.+.+.|++|++.+             .++++|++++++.++++++.++.+.++
T Consensus       110 ~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~  189 (320)
T 4dll_A          110 VAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHV  189 (320)
T ss_dssp             HHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhcCCEEEe
Confidence            7888999999999999999999999999998999998753             677889999999999999999446789


Q ss_pred             cCCCchHhHhHHhHhhhHhhh
Q 044797          149 NISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       149 g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      |..|+|.. .+++.|.+...+
T Consensus       190 g~~g~a~~-~Kl~~N~~~~~~  209 (320)
T 4dll_A          190 GPHGSGQL-TKLANQMIVGIT  209 (320)
T ss_dssp             ESTTHHHH-HHHHHHHHHHHH
T ss_pred             CCccHHHH-HHHHHHHHHHHH
Confidence            99999875 567788766543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.96  E-value=2.1e-27  Score=183.54  Aligned_cols=166  Identities=19%  Similarity=0.296  Sum_probs=148.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .|||+|||+|.||.+++++|.++|++|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.+++++++++++
T Consensus         1 s~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            36999999999999999999999999999999999999999989999999999999999999999988889999876567


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.++++++++++|+..|.+.+++.+.+.+.|++|++.+             .++++++++.++.++++++.+|. +.+
T Consensus        81 l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  160 (287)
T 3pef_A           81 VLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIH  160 (287)
T ss_dssp             HHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEE
Confidence            8889999999999999999999999999988999998643             56788999999999999999995 568


Q ss_pred             ecCCCchHhHhHHhHhhhHhh
Q 044797          148 VNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                      +|..|++.. .+++.|.+...
T Consensus       161 ~g~~g~~~~-~Kl~~N~~~~~  180 (287)
T 3pef_A          161 LGDVGKGAE-MKLVVNMVMGG  180 (287)
T ss_dssp             CSSTTHHHH-HHHHHHHHHHH
T ss_pred             eCCCCHHHH-HHHHHHHHHHH
Confidence            899999965 55777876653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.95  E-value=3.3e-27  Score=184.16  Aligned_cols=155  Identities=14%  Similarity=0.063  Sum_probs=137.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++||+|||+|.||.+++++|.++|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.++++++. +++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~~   87 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MPG   87 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-STT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-ccc
Confidence            4689999999999999999999999999999999999999888988888999999999999999998888888883 224


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhC-Ccee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFF-IDKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g-~~~~  147 (173)
                      +. .+.++++++|+|++.|.+.+++.+.+.+.|++|++.+             +++++|+++.++.++++++.+| .+.+
T Consensus        88 l~-~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~  166 (306)
T 3l6d_A           88 VA-RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVF  166 (306)
T ss_dssp             HH-HHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEE
T ss_pred             hh-hccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEE
Confidence            53 4579999999999999999999999988999998752             6778999999999999999995 5778


Q ss_pred             e--cC-CCchHhHh
Q 044797          148 V--NI-SGQEIHWG  158 (173)
Q Consensus       148 ~--g~-~Gsg~a~~  158 (173)
                      +  |. .|+|..+.
T Consensus       167 ~~~g~~~g~g~~~k  180 (306)
T 3l6d_A          167 LPWDEALAFATVLH  180 (306)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             ecCCCCccHHHHHH
Confidence            8  86 68887764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.95  E-value=1.7e-26  Score=189.37  Aligned_cols=165  Identities=13%  Similarity=0.156  Sum_probs=143.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-----CceecChhhhhc---CCCEEEEeccChhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-----GIRSASPMDAGK---DVSALVVVISHVDQID   73 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-----~~~~~~~~~~~~---~~dvii~~v~~~~~~~   73 (173)
                      +++|||||+|.||.+||++|.++|++|++|||++++.+.+.+.+     +..+.+++++++   ++|+||+++|+++.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            46899999999999999999999999999999999999987753     234678888876   5999999999877888


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHh
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNE  141 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~  141 (173)
                      +++   +++.+.+++|++|||++++.|.+..++.+.+.++|++|++.+            .++++|++++++.++++++.
T Consensus        84 ~vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~  160 (484)
T 4gwg_A           84 DFI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQG  160 (484)
T ss_dssp             HHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHH
T ss_pred             HHH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHH
Confidence            888   578899999999999999999999999999999999998764            57889999999999999999


Q ss_pred             hCC-c-------eeecCCCchHhHhHHhHhhhHhhhh
Q 044797          142 FFI-D-------KKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       142 ~g~-~-------~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +|. +       .|+|+.|+| ++++++.|.+.-+++
T Consensus       161 ig~~v~~~~~~~~~~G~~Gag-~~vKmv~N~i~~~~m  196 (484)
T 4gwg_A          161 IAAKVGTGEPCCDWVGDEGAG-HFVKMVHNGIEYGDM  196 (484)
T ss_dssp             HSCBCTTSCBSBCCCEETTHH-HHHHHHHHHHHHHHH
T ss_pred             hcCcccCCCceEEEECCccHH-HHHHHHHHHHHHHHH
Confidence            985 3       688999999 557788888766554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.2e-26  Score=187.52  Aligned_cols=163  Identities=14%  Similarity=0.166  Sum_probs=143.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----cCCceecChhhhhcC---CCEEEEeccChhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----LGGIRSASPMDAGKD---VSALVVVISHVDQI   72 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~---~dvii~~v~~~~~~   72 (173)
                      |..+|+|||+|.||.+||++|.++|++|++|||++++.+.+.+     .|+..+.++++++++   +|+||+++|+++++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            6789999999999999999999999999999999999999887     477778889898876   99999999987788


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHH
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKN  140 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~  140 (173)
                      ++++   +++.+.+++|++|||++++.+.+.+++.+.+.+.|++|++.+            .++.+++++.++.++++|+
T Consensus        89 ~~vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~  165 (497)
T 2p4q_A           89 DALI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQ  165 (497)
T ss_dssp             HHHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHH
T ss_pred             HHHH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHH
Confidence            9998   578889999999999999999998889998888899887643            4677899999999999999


Q ss_pred             hhCCc-------eeecCCCchHhHhHHhHhhhHh
Q 044797          141 EFFID-------KKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       141 ~~g~~-------~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      .+|..       .++|..|+|.. .+++.|.+..
T Consensus       166 ~~g~~~dGe~~v~~vg~~G~g~~-~Kl~~N~~~~  198 (497)
T 2p4q_A          166 SISAKSDGEPCCEWVGPAGAGHY-VKMVHNGIEY  198 (497)
T ss_dssp             HHSCEETTEESCCCCEETTHHHH-HHHHHHHHHH
T ss_pred             HhcCccCCCCceEEECCccHHHH-HHHHHHHHHH
Confidence            99964       68899999965 5677777743

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.94  E-value=2.7e-25  Score=174.17  Aligned_cols=161  Identities=13%  Similarity=0.121  Sum_probs=135.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCCh-------HHHHHHHHcCCceec-ChhhhhcCCCEEEEeccChhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISD-------PLVDKFFMLGGIRSA-SPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~-------~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |+|||+|||+|.||.+++++|+++| ++|++|||++       +..+.+.+.|+  .. ++.++++++|+||+|+|++..
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~  100 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAAT  100 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHH
Confidence            6789999999999999999999999 9999999998       56666666777  66 788999999999999996655


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHH
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVK  139 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~  139 (173)
                      .+ .+   +++.+.++++++|+++|++.|.+.+++.+.+.+.|++|++.+            +++++|+++  +.+++++
T Consensus       101 ~~-~~---~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vgg~~~--~~~~~ll  174 (317)
T 4ezb_A          101 KA-VA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRA--VEVAERL  174 (317)
T ss_dssp             HH-HH---HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEESTTH--HHHHHHH
T ss_pred             HH-HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEeCChH--HHHHHHH
Confidence            44 44   467888999999999999999999999999998899887643            566777766  8999999


Q ss_pred             HhhCC-ceeecC-CCchHhHhHHhHhhhHhhhh
Q 044797          140 NEFFI-DKKVNI-SGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       140 ~~~g~-~~~~g~-~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +.+|. +.++|. .|+|-. .+++.|.+...++
T Consensus       175 ~~~g~~v~~~g~~~g~a~~-~Kl~~N~~~~~~~  206 (317)
T 4ezb_A          175 NALGMNLEAVGETPGQASS-LKMIRSVMIKGVE  206 (317)
T ss_dssp             HTTTCEEEEEESSTTHHHH-HHHHHHHHHHHHH
T ss_pred             HHhCCCeEEeCCCcCHHHH-HHHHHHHHHHHHH
Confidence            99996 568898 899966 5577887765543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.93  E-value=5.9e-25  Score=170.42  Aligned_cols=166  Identities=14%  Similarity=0.279  Sum_probs=140.8

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |+|||+|||+|.||..+++.|.+.|++|.+|||++++.+.+.+.|+....++.++++++|+|++|+|++.+++.+++..+
T Consensus         4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~   83 (299)
T 1vpd_A            4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN   83 (299)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcc
Confidence            67899999999999999999999999999999999999998888888888898989999999999998888888885434


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ce
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DK  146 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~  146 (173)
                      ++.+.+++++++++++++.+.+.+++.+.+.+.|++|++.+             .++++++++..+.++++++.+|. +.
T Consensus        84 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~  163 (299)
T 1vpd_A           84 GIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV  163 (299)
T ss_dssp             CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred             hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeE
Confidence            67788999999999999999888899999988888887542             45667888889999999999996 56


Q ss_pred             eecCCCchHhHhHHhHhhhHh
Q 044797          147 KVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       147 ~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      +++..|+++. .++..|.+..
T Consensus       164 ~~~~~~~~~~-~Kl~~n~~~~  183 (299)
T 1vpd_A          164 HTGDIGAGNV-TKLANQVIVA  183 (299)
T ss_dssp             EEESTTHHHH-HHHHHHHHHH
T ss_pred             EeCCcCHHHH-HHHHHHHHHH
Confidence            7789999986 4455666553

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.93  E-value=1.1e-24  Score=170.22  Aligned_cols=159  Identities=13%  Similarity=0.150  Sum_probs=135.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC--hHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS--DPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~--~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      +|||+|||+|.||.+++++|.++|+ +|++|||+  +++.+.+.+.|+..++++.++++++|+||+|+|++... +++  
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~-~~~--  100 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAAL-EVA--  100 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHH-HHH--
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHH-HHH--
Confidence            3799999999999999999999999 99999997  58888888889988889999999999999999976544 455  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeece------------eeeeecCHhhHHHHHHHHHhhCC
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILER------------MFLISSSIDCFTYLFLVKNEFFI  144 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~  144 (173)
                       +++.+.++++++|+|+||+.|.+.+++.+.+.++  |++|++.+            +++++|+++  +.++++++.+|.
T Consensus       101 -~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~l~i~vgg~~~--~~~~~ll~~~g~  177 (312)
T 3qsg_A          101 -QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGA--RRFQAAFTLYGC  177 (312)
T ss_dssp             -HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGGSEEEEESTTH--HHHHHHHHTTTC
T ss_pred             -HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCCEEEEecCChH--HHHHHHHHHhCC
Confidence             4688889999999999999999999999998877  89998753            456667665  899999999997


Q ss_pred             -ceeecC-CCchHhHhHHhHhhhHh
Q 044797          145 -DKKVNI-SGQEIHWGYLKINYFIR  167 (173)
Q Consensus       145 -~~~~g~-~Gsg~a~~~~~~~~~~~  167 (173)
                       +.++|. .|+|.+ .+++.|.++.
T Consensus       178 ~~~~~g~~~g~a~~-~Kl~~n~~~~  201 (312)
T 3qsg_A          178 RIEVLDGEVGGAAL-LKMCRSAVLK  201 (312)
T ss_dssp             EEEECCSSTTHHHH-HHHHHHHHHH
T ss_pred             CeEEcCCCCCHHHH-HHHHHHHHHH
Confidence             567887 798866 4577777763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.93  E-value=9.9e-25  Score=179.34  Aligned_cols=161  Identities=11%  Similarity=0.126  Sum_probs=140.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCceecChhhhhcC---CCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGIRSASPMDAGKD---VSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v   75 (173)
                      ++|+|||+|.||++||++|.++|++|++|||++++.+.+.+.    |+..+.++++++++   +|+||+++|++++++++
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v   95 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAA   95 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHH
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH
Confidence            689999999999999999999999999999999999988775    77778889998877   99999999976788999


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g  143 (173)
                      +   +++.+.++++++|||++++.+.+++++.+.+.+.|++|++.+            .++++++++.++.++++|+.+|
T Consensus        96 l---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~g  172 (480)
T 2zyd_A           96 I---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA  172 (480)
T ss_dssp             H---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHHHS
T ss_pred             H---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHHHh
Confidence            8   578888999999999999999988889998988899887644            4677889999999999999999


Q ss_pred             Cc--------eeecCCCchHhHhHHhHhhhHh
Q 044797          144 ID--------KKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       144 ~~--------~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      ..        .++|..|+|.. .+++.|.+..
T Consensus       173 ~~~~dGe~~v~~~g~~G~g~~-~Kl~~N~~~~  203 (480)
T 2zyd_A          173 AVAEDGEPCVTYIGADGAGHY-VKMVHNGIEY  203 (480)
T ss_dssp             CBCTTSCBSBCCCBSTTHHHH-HHHHHHHHHH
T ss_pred             ccccCCCceEEEECCccHHHH-HHHHHHHHHH
Confidence            64        68899999976 4566777643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.92  E-value=8.5e-25  Score=165.62  Aligned_cols=160  Identities=17%  Similarity=0.268  Sum_probs=124.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |+|||+|||+|+||.+++++|.++|+    +|++|||++++.+.+.+ .|+....++.++++++|+||+|+| +++++++
T Consensus         1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v   79 (247)
T 3gt0_A            1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASI   79 (247)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHH
T ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHH
Confidence            78999999999999999999999998    99999999999998875 488888899999999999999998 6778888


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ce-eeeee---cCHhhHHHHHHHHHh
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ER-MFLIS---SSIDCFTYLFLVKNE  141 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~-~~~~~---g~~~~~~~~~~~~~~  141 (173)
                      +   +++.+.+++++++++.+++..  .+.+.+.+.. +.+++.          .+ +.+..   ++++.++.++++++.
T Consensus        80 ~---~~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~~-~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  153 (247)
T 3gt0_A           80 I---NEIKEIIKNDAIIVTIAAGKS--IESTENAFNK-KVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNS  153 (247)
T ss_dssp             C------CCSSCTTCEEEECSCCSC--HHHHHHHHCS-CCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGG
T ss_pred             H---HHHHhhcCCCCEEEEecCCCC--HHHHHHHhCC-CCcEEEEeCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            8   567788889999986654332  2355565542 222221          11 23332   567888999999999


Q ss_pred             hCCceee---------cCCCchHhHhHHhHhhhHhhhhc
Q 044797          142 FFIDKKV---------NISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       142 ~g~~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      +|...++         +.+|+||+|.|.    ++|+|.+
T Consensus       154 ~G~~~~~~e~~~d~~~a~~g~gpa~~~~----~~eal~~  188 (247)
T 3gt0_A          154 FGQTEIVSEKLMDVVTSVSGSSPAYVYM----IIEAMAD  188 (247)
T ss_dssp             GEEEEECCGGGHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             CCCEEEeCHHHccHHHHHhccHHHHHHH----HHHHHHH
Confidence            9986555         678999999998    6776665

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.92  E-value=2.8e-24  Score=165.72  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=126.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY---KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++||+|||+|+||.+++++|.++|+   +|++|||++++.+.+.+. |+..+.+..++++++|+||+|+| ++.+++++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHH-
Confidence            4799999999999999999999999   999999999999998875 88888899999999999999998 67888888 


Q ss_pred             Cccchhhc-CCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ceeeeee-c---CHhhHHHHHHHHHhh
Q 044797           78 GHEGVLKG-LQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ERMFLIS-S---SIDCFTYLFLVKNEF  142 (173)
Q Consensus        78 ~~~~i~~~-l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~~~~~~-g---~~~~~~~~~~~~~~~  142 (173)
                        +++.+. +++++++++++++.+  ...+.+.+.. +.+++.          .+...+. +   +++..+.++++++.+
T Consensus        81 --~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~-~~~vvr~mPn~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~i  155 (280)
T 3tri_A           81 --EELKDILSETKILVISLAVGVT--TPLIEKWLGK-ASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAV  155 (280)
T ss_dssp             --HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC-CSSEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGG
T ss_pred             --HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC-CCeEEEEecCChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHC
Confidence              567777 788889998765443  3566677653 222221          1233332 3   357788999999999


Q ss_pred             CCceee----------cCCCchHhHhHHhHhhhHhhhhcC
Q 044797          143 FIDKKV----------NISGQEIHWGYLKINYFIRVMTDG  172 (173)
Q Consensus       143 g~~~~~----------g~~Gsg~a~~~~~~~~~~~~~~~~  172 (173)
                      |...++          +.+||||+|+|+    |+++|.|+
T Consensus       156 G~~~~v~~E~~~d~~talsgsgpa~~~~----~~eal~~a  191 (280)
T 3tri_A          156 GLVIWVSSEDQIEKIAALSGSGPAYIFL----IMEALQEA  191 (280)
T ss_dssp             EEEEECSSHHHHHHHHHHTTSHHHHHHH----HHHHHHHH
T ss_pred             CCeEEECCHHHhhHHHHHhccHHHHHHH----HHHHHHHH
Confidence            986665          349999999998    77777653

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.92  E-value=6.2e-24  Score=164.43  Aligned_cols=162  Identities=20%  Similarity=0.288  Sum_probs=136.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      |||+|||+|.||.+++++|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|.+.+++.++....++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            48999999999999999999999999999999999999888888888889998999999999998888888888532335


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKV  148 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~  148 (173)
                      .+.++++++++++++..+.+.+++.+.+.+.+..|++.+             .++.+++++..+.++++++.+|. ..++
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~  160 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC  160 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            567889999999999999888888888877777776542             45667888899999999999996 4678


Q ss_pred             cCCCchHhHhHHhHhhh
Q 044797          149 NISGQEIHWGYLKINYF  165 (173)
Q Consensus       149 g~~Gsg~a~~~~~~~~~  165 (173)
                      +..|+|+++. +..|.+
T Consensus       161 ~~~g~~~~~k-l~~n~~  176 (296)
T 2gf2_A          161 GAVGTGQAAK-ICNNML  176 (296)
T ss_dssp             ESTTHHHHHH-HHHHHH
T ss_pred             CCccHHHHHH-HHHHHH
Confidence            9999999875 345544

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.92  E-value=1.9e-23  Score=162.02  Aligned_cols=163  Identities=21%  Similarity=0.290  Sum_probs=138.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +|||+|||+|.||..+++.|.+.|++|++|||++++.+.+.+.|+....++.++++++|+|++|+|.+.+++.++..+++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            37899999999999999999999999999999999999888878888888989899999999999988888888853336


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCc-ee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFID-KK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~-~~  147 (173)
                      +.+.++++++|++++++.|.+.+++.+.+.+.+++|++.+             .++++++++..+.++++++.+|.. .+
T Consensus        84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  163 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYH  163 (301)
T ss_dssp             HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEE
Confidence            7788899999999999998888899998887888887532             455677888889999999999964 56


Q ss_pred             ecCCCchHhHhHHhHhhh
Q 044797          148 VNISGQEIHWGYLKINYF  165 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~  165 (173)
                      ++..|++++.+ ++.|.+
T Consensus       164 ~~~~g~~~~~K-l~~N~~  180 (301)
T 3cky_A          164 VGDTGAGDAVK-IVNNLL  180 (301)
T ss_dssp             EESTTHHHHHH-HHHHHH
T ss_pred             eCCCCHHHHHH-HHHHHH
Confidence            89999998743 455554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.92  E-value=1.4e-23  Score=172.36  Aligned_cols=160  Identities=10%  Similarity=0.122  Sum_probs=137.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCceecChhhhhcC---CCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGIRSASPMDAGKD---VSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v   75 (173)
                      ++|+|||+|.||.+++++|.++|++|.+|||++++.+.+.+.    ++..+.++++++++   +|+|++|+|++.+++++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            689999999999999999999999999999999999888765    67777888888776   99999999977788888


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFF  143 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g  143 (173)
                      +   +++.+.+++|++|++++++.+...+++.+.+.+.|++|++.+            .++.+++++..+.++++++.+|
T Consensus        86 l---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~g  162 (474)
T 2iz1_A           86 I---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIA  162 (474)
T ss_dssp             H---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHHHS
T ss_pred             H---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHHHh
Confidence            8   568888999999999999998888888888887888887643            3567888899999999999999


Q ss_pred             Cc---------eeecCCCchHhHhHHhHhhhH
Q 044797          144 ID---------KKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       144 ~~---------~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                      ..         .++|..|+|.. .+++.|.+.
T Consensus       163 ~~~~~dge~~~~~~g~~g~g~~-~Kl~~N~~~  193 (474)
T 2iz1_A          163 AKAPQDGKPCVAYMGANGAGHY-VKMVHNGIE  193 (474)
T ss_dssp             CBCTTTCCBSBCCCBSTTHHHH-HHHHHHHHH
T ss_pred             cccccCCCceEEEECCccHHHH-HHHHHhHHH
Confidence            64         57899999966 456666663

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.91  E-value=3e-23  Score=160.38  Aligned_cols=164  Identities=18%  Similarity=0.300  Sum_probs=138.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ||||+|||+|.||..+++.|.+.|++|++|| ++++.+.+.+.|+....++.++++++|+|++|+|.+.+++.++...++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   81 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG   81 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence            5799999999999999999999999999999 999888888778887888999899999999999988878888853336


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.++++++|++++++.|.+.+++.+.+.++++++++.+             .++++++++..+.++++++.+|. +.+
T Consensus        82 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~  161 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITL  161 (295)
T ss_dssp             STTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEE
Confidence            7778899999999999999888999999888888887542             45667888889999999999996 467


Q ss_pred             ecCCCchHhHhHHhHhhhHh
Q 044797          148 VNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      ++..|++++.+ ++.|.+..
T Consensus       162 ~~~~~~~~~~K-l~~n~~~~  180 (295)
T 1yb4_A          162 VGGNGDGQTCK-VANQIIVA  180 (295)
T ss_dssp             EESTTHHHHHH-HHHHHHHH
T ss_pred             eCCCCHHHHHH-HHHHHHHH
Confidence            89999998744 45665443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.91  E-value=6.3e-23  Score=168.83  Aligned_cols=160  Identities=12%  Similarity=0.150  Sum_probs=137.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----cCCceecChhhhhc---CCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----LGGIRSASPMDAGK---DVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~   74 (173)
                      |+|+|||+|.||.+++.+|.++|++|.+|||++++.+.+.+     .++..+.+++++++   ++|+||+|+|++.++++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            68999999999999999999999999999999999999887     57777888888874   89999999997678888


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhh
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEF  142 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~  142 (173)
                      ++   +++.+.++++++|++++++.+.+..++.+.+.+.|++|+..+            .++.+++++..+.++++++.+
T Consensus        83 vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~  159 (482)
T 2pgd_A           83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI  159 (482)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred             HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence            88   568888999999999999999888888888888888887643            457788888999999999999


Q ss_pred             CCc--------eeecCCCchHhHhHHhHhhhH
Q 044797          143 FID--------KKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       143 g~~--------~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                      |..        .++|..|+|.. .+++.|.+.
T Consensus       160 g~~v~d~~~~~~~~g~~g~g~~-~Kl~~N~~~  190 (482)
T 2pgd_A          160 AAKVGTGEPCCDWVGDDGAGHF-VKMVHNGIE  190 (482)
T ss_dssp             SCBCTTSCBSCCCCEETTHHHH-HHHHHHHHH
T ss_pred             hhhccCCCcceEEECCCcHHHH-HHHHHHHHH
Confidence            964        57889999865 556666653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.90  E-value=7.9e-23  Score=160.42  Aligned_cols=159  Identities=13%  Similarity=0.168  Sum_probs=125.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCChH--HHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISDP--LVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~~--~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |||+|||+|+||.+++.+|.++|    ++|++|||+++  +.+.+.+.|+....++.++++++|+||+|+| ++++++++
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~vl  101 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFIL  101 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHHH
Confidence            68999999999999999999999    89999999986  7888877798888888899999999999999 67888888


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeec----------e-eeeeecC---HhhHHHHHHHHH
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILE----------R-MFLISSS---IDCFTYLFLVKN  140 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~----------~-~~~~~g~---~~~~~~~~~~~~  140 (173)
                         +++.+.++++++|++++++.+.  ..+.+.+.+.  +.+++..          + ..+.+++   ++..+.++++|+
T Consensus       102 ---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~v~~~g~~~~~~~~~~v~~ll~  176 (322)
T 2izz_A          102 ---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLS  176 (322)
T ss_dssp             ---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence               4677788899999999765432  3456666542  2333321          1 4445565   677889999999


Q ss_pred             hhCCceee---------cCCCchHhHhHHhHhhhHhhhhc
Q 044797          141 EFFIDKKV---------NISGQEIHWGYLKINYFIRVMTD  171 (173)
Q Consensus       141 ~~g~~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~  171 (173)
                      .+|...++         +.+|++|+|.+.    ++++|.+
T Consensus       177 ~~G~~~~~~e~~~~~~~a~~g~gpa~~~~----~~eala~  212 (322)
T 2izz_A          177 SVGFCTEVEEDLIDAVTGLSGSGPAYAFT----ALDALAD  212 (322)
T ss_dssp             TTEEEEECCGGGHHHHHHHTTTHHHHHHH----HHHHHHH
T ss_pred             hCCCEEEeCHHHHHHHHHHhcCHHHHHHH----HHHHHHH
Confidence            99976554         568999999998    5555543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.90  E-value=3.4e-22  Score=156.16  Aligned_cols=162  Identities=17%  Similarity=0.254  Sum_probs=135.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +||+|||+|.||..+++.|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.++++++....++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            78999999999999999999999999999999999988888888888888888899999999999888888888532235


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCc-eee
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFID-KKV  148 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~-~~~  148 (173)
                      .+.++++++|+++++..+...+++.+.+.+.+..|+..+             .++++++++..+.++++++.+|.. .++
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  190 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL  190 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEEe
Confidence            577889999999999999888999998877788776532             345578888889999999999964 466


Q ss_pred             cCCCchHhHhHHhHhhh
Q 044797          149 NISGQEIHWGYLKINYF  165 (173)
Q Consensus       149 g~~Gsg~a~~~~~~~~~  165 (173)
                      +..|.+..+ ++++|.+
T Consensus       191 ~~~~~~~~~-K~~~n~~  206 (316)
T 2uyy_A          191 GEVGNAAKM-MLIVNMV  206 (316)
T ss_dssp             SSTTHHHHH-HHHHHHH
T ss_pred             CCCCHHHHH-HHHHHHH
Confidence            788888654 4556654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.90  E-value=1.9e-22  Score=165.72  Aligned_cols=160  Identities=12%  Similarity=0.115  Sum_probs=135.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-C-------CceecChhhhhc---CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-G-------GIRSASPMDAGK---DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~~~~~---~~dvii~~v~~~~~   71 (173)
                      |||+|||+|.||.+++.+|.++|++|++|||++++.+.+.+. |       +..+.+++++++   ++|+|++|+|++.+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            589999999999999999999999999999999999888765 5       556778888876   49999999997677


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHH
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVK  139 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~  139 (173)
                      +++++   +++.+.++++++|++.+++.+...+++.+.+.+.|++|+..+            .++.+++++..+.+++++
T Consensus        82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll  158 (478)
T 1pgj_A           82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIV  158 (478)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHH
T ss_pred             HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHH
Confidence            88888   568888999999999999998888888888888888887543            456788888999999999


Q ss_pred             HhhCCc--------eeecCCCchHhHhHHhHhhhH
Q 044797          140 NEFFID--------KKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       140 ~~~g~~--------~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                      +.+|..        .++|..|+|.. .+++.|.+.
T Consensus       159 ~~~g~~~~dg~~~v~~~g~~G~g~~-~Kl~~N~~~  192 (478)
T 1pgj_A          159 EAAAAKADDGRPCVTMNGSGGAGSC-VKMYHNSGE  192 (478)
T ss_dssp             HHHSCBCTTSCBSCCCCCSTTHHHH-HHHHHHHHH
T ss_pred             HHhcccccCCCeeEEEeCCchHHHH-HhhHHHHHH
Confidence            999964        67899999965 456666553

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.89  E-value=2.1e-23  Score=157.87  Aligned_cols=160  Identities=12%  Similarity=0.103  Sum_probs=119.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH--------------HHHHHHc-CCceecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL--------------VDKFFML-GGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~--------------~~~~~~~-g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      .+||+|||+|.||.++|++|.++|++|++|||++++              .+.+.+. +.....++.++++++|+||+|+
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilav   98 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNAT   98 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEcc
Confidence            479999999999999999999999999999999987              5555443 5566778889999999999999


Q ss_pred             cChhhhhhhhcCccch-hhcCCCCCEEEEcC-----------CCCHHHH----HHHHHHHhc----CCceeeece-----
Q 044797           67 SHVDQIDDIFFGHEGV-LKGLQKGAVIILQS-----------TILPSHM----QKLEKTFTG----NLTFYILER-----  121 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i-~~~l~~g~~ii~~s-----------t~~~~~~----~~l~~~l~~----~g~~~v~~~-----  121 (173)
                      |+ ....+++   .++ .+.+ ++++|+|++           |..|.+.    +.+++.+..    ++..+++.+     
T Consensus        99 p~-~~~~~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~  173 (245)
T 3dtt_A           99 EG-ASSIAAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDP  173 (245)
T ss_dssp             CG-GGHHHHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCG
T ss_pred             Cc-HHHHHHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCc
Confidence            95 4455665   245 4555 899999999           3444333    444444422    134443321     


Q ss_pred             --------eeeeecC-HhhHHHHHHHHHhhCC--ceeecCCCchHhHhHHhHhhhHh
Q 044797          122 --------MFLISSS-IDCFTYLFLVKNEFFI--DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       122 --------~~~~~g~-~~~~~~~~~~~~~~g~--~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                              .++++|+ ++.++.++++++.+|.  ..++|..|+|.. .++..|.++.
T Consensus       174 ~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~-~k~~~~~~~~  229 (245)
T 3dtt_A          174 GRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARG-AEMLLPVWIR  229 (245)
T ss_dssp             GGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHH-HHTTHHHHHH
T ss_pred             cccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHH-hhhhHHHHHH
Confidence                    4556564 7899999999999995  478999999977 5677777765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.89  E-value=3.7e-22  Score=153.79  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=130.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ||||+|||+|.||..+++.|.+ |++|++|||++++.+.+.+.|+...+ +.++++++|+||+|+|++.++++++   ++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~   75 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EA   75 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HH
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HH
Confidence            3689999999999999999999 99999999999999888777776666 7788889999999999877788877   46


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.++++++++++++..+...+++.+.+.+.+++|+..+             .++++++++..+.+++++ .+|. ..+
T Consensus        76 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~  154 (289)
T 2cvz_A           76 LYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVH  154 (289)
T ss_dssp             HTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEE
T ss_pred             HHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEE
Confidence            7778889999999999999888999999887788887543             455677888889999999 9996 567


Q ss_pred             ecCCCchHhHhHHhHhhh
Q 044797          148 VNISGQEIHWGYLKINYF  165 (173)
Q Consensus       148 ~g~~Gsg~a~~~~~~~~~  165 (173)
                      ++..|.+.. .++..|.+
T Consensus       155 ~~~~~~~~~-~k~~~n~~  171 (289)
T 2cvz_A          155 VGPVGAGHA-VKAINNAL  171 (289)
T ss_dssp             EESTTHHHH-HHHHHHHH
T ss_pred             cCCCcHHHH-HHHHHHHH
Confidence            888887654 34555654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.87  E-value=3.2e-21  Score=157.38  Aligned_cols=165  Identities=9%  Similarity=0.071  Sum_probs=130.5

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------------CCceecChhhhhcCCC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------------GGIRSASPMDAGKDVS   60 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~d   60 (173)
                      |+|||+|||+|.||.++|..|+++|++|++||+++++++.+.+.                    ++..++++.++++++|
T Consensus         1 M~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD   80 (450)
T 3gg2_A            1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD   80 (450)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence            77899999999999999999999999999999999998887651                    1345678888899999


Q ss_pred             EEEEeccChh---------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC------cee--eece--
Q 044797           61 ALVVVISHVD---------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL------TFY--ILER--  121 (173)
Q Consensus        61 vii~~v~~~~---------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g------~~~--v~~~--  121 (173)
                      +||+|+|++.         .+++++   +++.++++++++|++.||+.|.+.+++.+.+.+.+      ..+  +..+  
T Consensus        81 vViiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~  157 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEF  157 (450)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred             EEEEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhh
Confidence            9999999764         677777   57888999999999999999999998888776531      212  2111  


Q ss_pred             --------------eeeeec-CHhhHHHHHHHHHhhCC---ceeecCCCchHhHhHHhHhhhHhhh
Q 044797          122 --------------MFLISS-SIDCFTYLFLVKNEFFI---DKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       122 --------------~~~~~g-~~~~~~~~~~~~~~~g~---~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                                    .+++|+ ++++.+.++++++.++.   ..+++..+++-. .+++.|.+....
T Consensus       158 a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~-~Kl~~N~~~a~~  222 (450)
T 3gg2_A          158 LKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEM-TKYAANAMLATR  222 (450)
T ss_dssp             CCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHH-HHHHHHHHHHHH
T ss_pred             hcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHH-HHHHHHHHHHHH
Confidence                          245565 47899999999999875   567787777644 667788776543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.86  E-value=1.8e-20  Score=146.53  Aligned_cols=156  Identities=16%  Similarity=0.110  Sum_probs=123.0

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCC--ceecChhh-hhcCCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGG--IRSASPMD-AGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~-~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |++||+|||+|.||.++++.|.+.|+  +|++|||++++.+.+.+.|+  ....++.+ +++++|+||+|+| +..+.++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v  110 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREI  110 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSC-GGGHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCC-HHHHHHH
Confidence            34799999999999999999999999  99999999999998888886  45677888 8999999999999 4567777


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeee----------------ceeeeee----cCHhhHH
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYIL----------------ERMFLIS----SSIDCFT  133 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~----------------~~~~~~~----g~~~~~~  133 (173)
                      +   +++.+.++++++|+|++++++...+.+.+.+..  -+.+.+.                ...+.+.    ++++..+
T Consensus       111 l---~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~  187 (314)
T 3ggo_A          111 A---KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLK  187 (314)
T ss_dssp             H---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHH
T ss_pred             H---HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHH
Confidence            7   568888999999999999887777888877643  1112111                1123333    4677899


Q ss_pred             HHHHHHHhhCCc-eee---------cCCCchHhHhHH
Q 044797          134 YLFLVKNEFFID-KKV---------NISGQEIHWGYL  160 (173)
Q Consensus       134 ~~~~~~~~~g~~-~~~---------g~~Gsg~a~~~~  160 (173)
                      .++++++.+|.. .++         +.+++.|+|...
T Consensus       188 ~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~  224 (314)
T 3ggo_A          188 LVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF  224 (314)
T ss_dssp             HHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999963 333         567899998754

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.86  E-value=6.8e-21  Score=154.07  Aligned_cols=161  Identities=14%  Similarity=0.123  Sum_probs=129.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc------------------CCceecChhhhhcCCCEEE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML------------------GGIRSASPMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~dvii   63 (173)
                      +|||+|||+|.||.++|..|++ |++|++||+++++++.+.+.                  ++..++++.++++++|+||
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVi  114 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVI  114 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEE
Confidence            4799999999999999999988 99999999999999887651                  3456778889999999999


Q ss_pred             EeccChh----------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------
Q 044797           64 VVISHVD----------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------  121 (173)
Q Consensus        64 ~~v~~~~----------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------  121 (173)
                      +|+|++.          .++.++   +++.+ +++++++++.||+.|.+++++.+.+.+.++.|-..+            
T Consensus       115 iaVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~~sPe~~~~G~A~~~~l~  190 (432)
T 3pid_A          115 IATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVIFSPEFLREGRALYDNLH  190 (432)
T ss_dssp             ECCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEEECCCCCCTTSHHHHHHS
T ss_pred             EeCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEeecCccCCcchhhhcccC
Confidence            9999763          355555   56777 899999999999999999999999987776652211            


Q ss_pred             --eeeeecCHhhHHHHHHHHHh--hC--CceeecCCCchHhHhHHhHhhhHhh
Q 044797          122 --MFLISSSIDCFTYLFLVKNE--FF--IDKKVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       122 --~~~~~g~~~~~~~~~~~~~~--~g--~~~~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                        .+++|++++..+.+.+++..  ++  ...+++..|+|-+ .+++.|.|...
T Consensus       191 p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~-~Kl~~N~~~a~  242 (432)
T 3pid_A          191 PSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEA-IKLFANTYLAL  242 (432)
T ss_dssp             CSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHH-HHHHHHHHHHH
T ss_pred             CceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHH-HHHHHHHHHHH
Confidence              56788888888999999976  43  3466777788855 56777777643

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.86  E-value=8.5e-21  Score=144.45  Aligned_cols=154  Identities=12%  Similarity=0.135  Sum_probs=119.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||+|||+|.||..++++|.+.| ++|++|||++++.+.+.+. |+....++.+++ ++|+||+|+| +.++++++   .
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~   75 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K   75 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence            48999999999999999999999 9999999999999988775 888877888888 9999999999 78888887   3


Q ss_pred             chhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCceeeec----------e--eeeeec--CHhhHHHHHHHHHhhCCc
Q 044797           81 GVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTFYILE----------R--MFLISS--SIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~~v~~----------~--~~~~~g--~~~~~~~~~~~~~~~g~~  145 (173)
                      ++.+  + +++|+++ ++..+   +.+.+.+.. +.+++..          +  .+..++  +++..+.++++++.+|..
T Consensus        76 ~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~-~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~  148 (263)
T 1yqg_A           76 NIRT--N-GALVLSVAAGLSV---GTLSRYLGG-TRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT  148 (263)
T ss_dssp             TCCC--T-TCEEEECCTTCCH---HHHHHHTTS-CCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEE
T ss_pred             Hhcc--C-CCEEEEecCCCCH---HHHHHHcCC-CCcEEEEcCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence            4544  4 8899998 55554   456666653 4444332          1  233344  567788999999999977


Q ss_pred             eeec-C---------CCchHhHhHHhHhhhHhh
Q 044797          146 KKVN-I---------SGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       146 ~~~g-~---------~Gsg~a~~~~~~~~~~~~  168 (173)
                      .+++ .         .|++|+|.+..++.+.|+
T Consensus       149 ~~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~  181 (263)
T 1yqg_A          149 VWLDDEEKMHGITGISGSGPAYVFYLLDALQNA  181 (263)
T ss_dssp             EECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             EEeCChhhccHHHHHHccHHHHHHHHHHHHHHH
Confidence            7888 6         899999988744444443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.86  E-value=1.3e-21  Score=151.41  Aligned_cols=154  Identities=12%  Similarity=-0.027  Sum_probs=118.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------CCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------GGIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      ++|+|||+|.||.+||++|+ +|++|++||+++++++++.+.       +++.++++++ +++||+||.|+|++.++++.
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~   90 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVE   90 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHH
Confidence            68999999999999999999 999999999999999888776       6777778876 88999999999999888888


Q ss_pred             hcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHH-HHhcCCceeeece-----eeeeec---CHhhHHHHHHHHHhhCC-
Q 044797           76 FFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEK-TFTGNLTFYILER-----MFLISS---SIDCFTYLFLVKNEFFI-  144 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~-~l~~~g~~~v~~~-----~~~~~g---~~~~~~~~~~~~~~~g~-  144 (173)
                      +++  ++.+ + ++++++ |+||.++....+..+ ..+..|.||++..     +.++.+   ++++++.++++++.+|+ 
T Consensus        91 l~~--~l~~-~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~  166 (293)
T 1zej_A           91 VLR--EVER-L-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKE  166 (293)
T ss_dssp             HHH--HHHT-T-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH--HHhc-C-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHHHHHHHHHHHHHcCCe
Confidence            763  3443 4 888885 678888765433222 1123578888743     444444   78999999999999997 


Q ss_pred             ceeecCCCchHhHhHHhHhhhHhhh
Q 044797          145 DKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       145 ~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      ++++++.       |++++.++..+
T Consensus       167 ~v~v~d~-------fi~Nrll~~~~  184 (293)
T 1zej_A          167 VVVCKGQ-------SLVNRFNAAVL  184 (293)
T ss_dssp             EEEEESS-------CHHHHHHHHHH
T ss_pred             EEEeccc-------ccHHHHHHHHH
Confidence            5677764       56565555443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.86  E-value=6e-21  Score=155.34  Aligned_cols=163  Identities=10%  Similarity=0.059  Sum_probs=130.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~dvi   62 (173)
                      .+|+|||+|.||.++|.+|+++|++|++||+++++++.+.+.                    ++..++++.+++++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            589999999999999999999999999999999999887652                    135677888999999999


Q ss_pred             EEeccChh----------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC----ceeeece-------
Q 044797           63 VVVISHVD----------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL----TFYILER-------  121 (173)
Q Consensus        63 i~~v~~~~----------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g----~~~v~~~-------  121 (173)
                      |+|||+|.          .+++++   +++.+++++++++++.||+.|.+.+++.+.+.+.+    ..++..+       
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~  165 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGA  165 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTS
T ss_pred             EEEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccccccc
Confidence            99998764          477777   57888999999999999999999999999887643    2222211       


Q ss_pred             ---------eeeeecC-HhhHHHHHHHHHhhCC----ceeecCCCchHhHhHHhHhhhHhhh
Q 044797          122 ---------MFLISSS-IDCFTYLFLVKNEFFI----DKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       122 ---------~~~~~g~-~~~~~~~~~~~~~~g~----~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                               .+++|++ +++.+.++++++.++.    +.+++..+++-. .+++.|.+....
T Consensus       166 a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~-~Kl~~N~~~a~~  226 (446)
T 4a7p_A          166 AIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSEL-IKYAANAFLAVK  226 (446)
T ss_dssp             HHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHH-HHHHHHHHHHHH
T ss_pred             hhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHH-HHHHHHHHHHHH
Confidence                     3455664 6888999999998875    367788777755 567788776543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.86  E-value=1.7e-20  Score=144.80  Aligned_cols=160  Identities=12%  Similarity=0.091  Sum_probs=123.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCC--ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGG--IRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++||+|||+|+||.++++.|.++  |++|++|||++++.+.+.+.|.  ..+.++.++++++|+||+|+| +...++++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVP-IKKTIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSC-HHHHHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCC-HHHHHHHH-
Confidence            47999999999999999999987  6899999999999988877776  356678888899999999999 55667787 


Q ss_pred             Cccchhhc-CCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec---------------------eeeeee----cCHhh
Q 044797           78 GHEGVLKG-LQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE---------------------RMFLIS----SSIDC  131 (173)
Q Consensus        78 ~~~~i~~~-l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~---------------------~~~~~~----g~~~~  131 (173)
                        +++.+. ++++++|++.+++.+...+.+.+.+.+.+++++..                     ..+.++    ++++.
T Consensus        84 --~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~  161 (290)
T 3b1f_A           84 --KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNT  161 (290)
T ss_dssp             --HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTH
T ss_pred             --HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHH
Confidence              467777 88999999998887776777888776445655431                     012222    45678


Q ss_pred             HHHHHHHHHhhCCce-ee----------cCCCchHhHhHHhHhhh
Q 044797          132 FTYLFLVKNEFFIDK-KV----------NISGQEIHWGYLKINYF  165 (173)
Q Consensus       132 ~~~~~~~~~~~g~~~-~~----------g~~Gsg~a~~~~~~~~~  165 (173)
                      .+.++++++.+|... ++          ..+++++.|.+..+|.+
T Consensus       162 ~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~  206 (290)
T 3b1f_A          162 IPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQA  206 (290)
T ss_dssp             HHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            899999999999754 33          25788888887744433

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.85  E-value=2.6e-20  Score=141.90  Aligned_cols=149  Identities=11%  Similarity=0.140  Sum_probs=117.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC--ChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI--SDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~--~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||+|||+|+||.+++++|.+.|++|++|||  ++++.+.+.+.|+.  +++.++++++|+||+|+|++...+.+    .
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~----~   74 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA----R   74 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH----H
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH----H
Confidence            4899999999999999999999999999999  77888888777876  67788889999999999966555554    2


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCCc-ee
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFID-KK  147 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~~-~~  147 (173)
                      ++.+.+++  ++++++++.+.+.+++.+.+.+.+  |++.+            .++++++++  +.+++ ++.+|.. .+
T Consensus        75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~~g~~~~~  147 (264)
T 1i36_A           75 RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNRYGLNIEV  147 (264)
T ss_dssp             HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGGGTCEEEE
T ss_pred             HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHHcCCeeEE
Confidence            46666665  999999999988889999887655  44322            344555554  78888 9999974 67


Q ss_pred             ecC-CCchHhHhHHhHhhh
Q 044797          148 VNI-SGQEIHWGYLKINYF  165 (173)
Q Consensus       148 ~g~-~Gsg~a~~~~~~~~~  165 (173)
                      ++. .|++.+.. +..|.+
T Consensus       148 ~~~~~g~~~~~k-l~~n~~  165 (264)
T 1i36_A          148 RGREPGDASAIK-MLRSSY  165 (264)
T ss_dssp             CSSSTTHHHHHH-HHHHHH
T ss_pred             CCCCcCHHHHHH-HHHHHH
Confidence            787 79887744 556654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.85  E-value=2.2e-20  Score=141.98  Aligned_cols=154  Identities=14%  Similarity=0.076  Sum_probs=117.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      +|||+|||+|.||..+++.|.+.|++|.+|||++++.+.+.+. |+....++.++++++|+|++|+| +...++++.   
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~---   78 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLK---   78 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHT---
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHH---
Confidence            5799999999999999999999999999999999999888764 88877888898999999999999 667777762   


Q ss_pred             chhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhcCCceeeec----------e-eeee-ec--CHhhHHHHHHHHHhhCCc
Q 044797           81 GVLKGLQKGAVIILQS-TILPSHMQKLEKTFTGNLTFYILE----------R-MFLI-SS--SIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~~g~~~v~~----------~-~~~~-~g--~~~~~~~~~~~~~~~g~~  145 (173)
                      +    +++++++++.+ +.++.   .+.+.+. .+.+++..          + ..++ ++  +++..+.++++++.+|..
T Consensus        79 ~----l~~~~~vv~~~~~~~~~---~l~~~~~-~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G~~  150 (259)
T 2ahr_A           79 P----LHFKQPIISMAAGISLQ---RLATFVG-QDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGST  150 (259)
T ss_dssp             T----SCCCSCEEECCTTCCHH---HHHHHHC-TTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred             H----hccCCEEEEeCCCCCHH---HHHHhcC-CCCCEEEEcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence            2    34788999885 45554   3455553 34343321          1 2233 33  677889999999999977


Q ss_pred             eeecC---------CCchHhHhHHhHhhhHh
Q 044797          146 KKVNI---------SGQEIHWGYLKINYFIR  167 (173)
Q Consensus       146 ~~~g~---------~Gsg~a~~~~~~~~~~~  167 (173)
                      .+++.         +|++|+|.+..++.+.+
T Consensus       151 ~~~~~~~~d~~~al~g~~~~~~~~~~~~la~  181 (259)
T 2ahr_A          151 FDISEKDFDTFTALAGSSPAYIYLFIEALAK  181 (259)
T ss_dssp             EECCGGGHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             EEecHHHccHHHHHhccHHHHHHHHHHHHHH
Confidence            77776         89999999884444443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.85  E-value=8.9e-21  Score=155.29  Aligned_cols=165  Identities=14%  Similarity=0.101  Sum_probs=126.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-CC-eEEEEcCChH----HHHHHHH---------------------cC-CceecChh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-GY-KVQAFEISDP----LVDKFFM---------------------LG-GIRSASPM   53 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-g~-~V~~~d~~~~----~~~~~~~---------------------~g-~~~~~~~~   53 (173)
                      +|||+|||+|.||.++|..|+++ |+ +|++||++++    +++.+.+                     .+ ...+++ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            47999999999999999999999 99 9999999999    8877754                     12 233444 6


Q ss_pred             hhhcCCCEEEEeccChh--------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHH-H-hcCCc------ee
Q 044797           54 DAGKDVSALVVVISHVD--------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKT-F-TGNLT------FY  117 (173)
Q Consensus        54 ~~~~~~dvii~~v~~~~--------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~-l-~~~g~------~~  117 (173)
                      +++++||+||+|+|++.        +++.+....+++.+++++|+++++.||+.|.+.+++.+. + ++.|.      .+
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~v  176 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFAL  176 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBEE
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCceeE
Confidence            78899999999999763        344444333578889999999999999999999888864 3 22342      33


Q ss_pred             eece----------------eeeeecCHhhHHHHHHHHHhh-C-CceeecCCCchHhHhHHhHhhhHhh
Q 044797          118 ILER----------------MFLISSSIDCFTYLFLVKNEF-F-IDKKVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       118 v~~~----------------~~~~~g~~~~~~~~~~~~~~~-g-~~~~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                      +..+                .++.|+++++.+.++++++.+ + .+.+++..|+|-. .+++.|.|...
T Consensus       177 ~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~-~Kl~~N~~~a~  244 (478)
T 3g79_A          177 AHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEV-TKTAENTFRDL  244 (478)
T ss_dssp             EECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHH-HHHHHHHHHHH
T ss_pred             EeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHH-HHHHHHHHHHH
Confidence            3322                355677888999999999999 5 4678888888866 56778877653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.84  E-value=1.6e-19  Score=138.72  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=123.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCc--eecChhhhhc-CCCEEEEeccChhhhhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGI--RSASPMDAGK-DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~-~~dvii~~v~~~~~~~~v~   76 (173)
                      |+||+|||+|.||.++++.|.+.|+  +|++|||++++.+.+.+.|+.  ..+++.++++ ++|+|++|+| +....+++
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v~   79 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA   79 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCC-HHHHHHHH
Confidence            4689999999999999999999998  999999999999888877764  3567888888 9999999999 55677777


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceee----------------ece-eeee---ecCHhhHHH
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LTFYI----------------LER-MFLI---SSSIDCFTY  134 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v----------------~~~-~~~~---~g~~~~~~~  134 (173)
                         +++.+.++++.+|++.++..+...+.+.+.+.+.  +.+.+                ... +.+.   +++++..+.
T Consensus        80 ---~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~  156 (281)
T 2g5c_A           80 ---KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL  156 (281)
T ss_dssp             ---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHH
T ss_pred             ---HHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHH
Confidence               4577788999999999888877777788777541  11111                011 3333   456778899


Q ss_pred             HHHHHHhhCCce-ee---------cCCCchHhHh-HHhHhhhHhhhh
Q 044797          135 LFLVKNEFFIDK-KV---------NISGQEIHWG-YLKINYFIRVMT  170 (173)
Q Consensus       135 ~~~~~~~~g~~~-~~---------g~~Gsg~a~~-~~~~~~~~~~~~  170 (173)
                      ++++++.+|... ++         ..+|++|+|. +.    ++++|.
T Consensus       157 v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~----~~~~~~  199 (281)
T 2g5c_A          157 VKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFA----LVDTLI  199 (281)
T ss_dssp             HHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH----HHHHHH
T ss_pred             HHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            999999999743 33         3478889884 55    555554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.83  E-value=2.9e-20  Score=152.49  Aligned_cols=161  Identities=12%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHH-------------------cCCceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFM-------------------LGGIRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~d   60 (173)
                      +|||+|||+|.||.++|.+|+++  |++|++||+++++++.+.+                   .++..++++.++++++|
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            37999999999999999999998  8999999999999887532                   23455677888889999


Q ss_pred             EEEEeccChhhhh--------------hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-------
Q 044797           61 ALVVVISHVDQID--------------DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-------  119 (173)
Q Consensus        61 vii~~v~~~~~~~--------------~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-------  119 (173)
                      +||+|+|++.+.+              .+.   +++.+.++++++|++.||+.|.+.+++.+.+.+.+..+++       
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~P  161 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP  161 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCH
Confidence            9999999766533              333   3577788999999999999999998888888765421111       


Q ss_pred             ----ce--e--------eeeec-----CHhhHHHHHHHHHhh-C-CceeecCCCchHhHhHHhHhhhH
Q 044797          120 ----ER--M--------FLISS-----SIDCFTYLFLVKNEF-F-IDKKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       120 ----~~--~--------~~~~g-----~~~~~~~~~~~~~~~-g-~~~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                          .+  .        +++++     ++++.+.++++++.+ + ...+++..+++-. .+++.|.+.
T Consensus       162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~-~Kl~~N~~~  228 (467)
T 2q3e_A          162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSEL-SKLAANAFL  228 (467)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHH-HHHHHHHHH
T ss_pred             HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHH-HHHHHHHHH
Confidence                11  1        56777     677889999999998 6 4678888777755 456677664

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.83  E-value=9.4e-20  Score=147.52  Aligned_cols=160  Identities=18%  Similarity=0.186  Sum_probs=124.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC--------------------ceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG--------------------IRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~--------------------~~~~~~~~~~~~~dvi   62 (173)
                      .|..|||+|.||.++|.+|+++|++|++||+++++++.+.+...                    ..+++    +++||+|
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~~~aDvv   87 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----PEASDVF   87 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----CCCCSEE
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----hhhCCEE
Confidence            57899999999999999999999999999999999998876321                    11222    4579999


Q ss_pred             EEeccChhh--------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc-CCc------eeeece------
Q 044797           63 VVVISHVDQ--------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG-NLT------FYILER------  121 (173)
Q Consensus        63 i~~v~~~~~--------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~-~g~------~~v~~~------  121 (173)
                      |+|||+|..        ++.+....+++.+++++|+++++.||+.|.+.+++.+.+.+ .|.      .++..+      
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G  167 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPG  167 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTT
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCc
Confidence            999998763        22343323578889999999999999999999999886533 554      233322      


Q ss_pred             ----------eeeeecCHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhhhHh
Q 044797          122 ----------MFLISSSIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       122 ----------~~~~~g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                                .++.|+++++.+.++++++.++. ..+++..|+|-. .+++.|.|..
T Consensus       168 ~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~-~Kl~~N~~~a  223 (431)
T 3ojo_A          168 KILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEM-SKLMENTYRD  223 (431)
T ss_dssp             SHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHH-HHHHHHHHHH
T ss_pred             chhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHH-HHHHHHHHHH
Confidence                      45667788899999999999985 678888898876 5677777754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.83  E-value=5.6e-20  Score=141.82  Aligned_cols=157  Identities=11%  Similarity=0.147  Sum_probs=117.9

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |||||+|||+ |+||.++++.|.+.|++|++|||++++.+.+.+.|+... +..++++++|+||+|+| +..+++++   
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~-~~~~~~v~---   84 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALP-DNIIEKVA---   84 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSC-HHHHHHHH---
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCC-chHHHHHH---
Confidence            4679999999 999999999999999999999999999988887776554 67788899999999999 45578887   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee-ece-------------------------e---eeeecCHh
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI-LER-------------------------M---FLISSSID  130 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v-~~~-------------------------~---~~~~g~~~  130 (173)
                      +++.+.++++++|+++|+..+.  ..+.+ + ..+.+++ ..+                         .   +..+++++
T Consensus        85 ~~l~~~l~~~~ivv~~s~~~~~--~~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~  160 (286)
T 3c24_A           85 EDIVPRVRPGTIVLILDAAAPY--AGVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEE  160 (286)
T ss_dssp             HHHGGGSCTTCEEEESCSHHHH--HTCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTH
T ss_pred             HHHHHhCCCCCEEEECCCCchh--HHHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHH
Confidence            5677888899999998776533  22332 2 2345555 211                         0   22346778


Q ss_pred             hHHHHHHHHHhhCC----ceeec----------CC-CchHhHhHHhHhhhHhhhh
Q 044797          131 CFTYLFLVKNEFFI----DKKVN----------IS-GQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       131 ~~~~~~~~~~~~g~----~~~~g----------~~-Gsg~a~~~~~~~~~~~~~~  170 (173)
                      ..+.++++++.+|.    +.+++          .+ |++++|.+.    ++|+|.
T Consensus       161 ~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~----~~eal~  211 (286)
T 3c24_A          161 HYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVET----MVHAVD  211 (286)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            89999999999997    45553          22 677887777    555443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.82  E-value=1.7e-19  Score=148.37  Aligned_cols=163  Identities=10%  Similarity=0.078  Sum_probs=124.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHc-------------------CCceecChhhhhcCC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFML-------------------GGIRSASPMDAGKDV   59 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~   59 (173)
                      |+|||+|||+|.||.++|.+|+++  |++|++||+++++++.+.+.                   ++..++++.++++++
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            357999999999999999999998  79999999999999887642                   234456677888899


Q ss_pred             CEEEEeccChhh--------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc-CCc----ee-e-
Q 044797           60 SALVVVISHVDQ--------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG-NLT----FY-I-  118 (173)
Q Consensus        60 dvii~~v~~~~~--------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~-~g~----~~-v-  118 (173)
                      |+||+|+|++..              +++++   +++.++++++++|++.||..|.+.+++.+.+.+ .++    .+ + 
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~  164 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL  164 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence            999999987642              55555   567888999999999999999999999988876 542    11 1 


Q ss_pred             ec------e----------eeeeecCH-----hhHHHHHHHHHhhCC--ceeecCCCchHhHhHHhHhhhHh
Q 044797          119 LE------R----------MFLISSSI-----DCFTYLFLVKNEFFI--DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       119 ~~------~----------~~~~~g~~-----~~~~~~~~~~~~~g~--~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      ..      +          .+++|+..     ++.+.++++++.++.  ..+++..+++- +.+++.|.+..
T Consensus       165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae-~~Kl~~N~~~a  235 (481)
T 2o3j_A          165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSE-LSKLVANAFLA  235 (481)
T ss_dssp             ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHH-HHHHHHHHHHH
T ss_pred             eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHH-HHHHHHHHHHH
Confidence            11      1          34566654     467888999999984  56778777764 45677777543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.81  E-value=2e-19  Score=139.70  Aligned_cols=163  Identities=15%  Similarity=0.106  Sum_probs=113.0

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec------------Chhhhhc---CCCEEEEe
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA------------SPMDAGK---DVSALVVV   65 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------------~~~~~~~---~~dvii~~   65 (173)
                      |||||+|||+|.||+.++..|.++|++|++|||++++.+.+.+.|.....            +..++.+   ++|+||+|
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~   81 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL   81 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence            56899999999999999999999999999999999999888776643221            3344444   89999999


Q ss_pred             ccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceee-----ec--------e-eeee--
Q 044797           66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYI-----LE--------R-MFLI--  125 (173)
Q Consensus        66 v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v-----~~--------~-~~~~--  125 (173)
                      +| +..+++++   +++.+.++++++|++.+++.. ..+.+.+.+.+.    |..+.     ..        + ..+.  
T Consensus        82 v~-~~~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~  156 (316)
T 2ew2_A           82 TK-AQQLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENI  156 (316)
T ss_dssp             SC-HHHHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEES
T ss_pred             ec-cccHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeec
Confidence            99 56778887   567788999999999976432 345555555433    22111     10        1 1221  


Q ss_pred             -ecCHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhh
Q 044797          126 -SSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRV  168 (173)
Q Consensus       126 -~g~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~  168 (173)
                       +++++..+.++++|+.+|...++...=.+..|.++++|..+.+
T Consensus       157 ~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~  200 (316)
T 2ew2_A          157 DPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNG  200 (316)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHH
T ss_pred             CCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHH
Confidence             2346678889999999997655433333446667777765543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.81  E-value=3e-18  Score=131.41  Aligned_cols=153  Identities=11%  Similarity=0.074  Sum_probs=116.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc--eecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI--RSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||+|||+|.||.++++.|.+.|++|++|||++++.+.+.+.|..  ...++.++ +++|+||+|+| ++.+.+++   +
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~---~   75 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTL---E   75 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHH---H
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHH---H
Confidence            489999999999999999999999999999999999888777763  46678888 89999999999 56777887   4


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-Cceeee----------------ceeeeee----cCHhhHHHHHHHH
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-LTFYIL----------------ERMFLIS----SSIDCFTYLFLVK  139 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g~~~v~----------------~~~~~~~----g~~~~~~~~~~~~  139 (173)
                      ++.+.++++++|+++++.++...+.+.+.+.+. +.+.+.                ...+.+.    ++++..+.+++++
T Consensus        76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~  155 (279)
T 2f1k_A           76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVL  155 (279)
T ss_dssp             HHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHhhCCCCCEEEECCCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHH
Confidence            677888899999999888877766666654311 111111                0022222    3577888999999


Q ss_pred             HhhCC-ceee---------cCCCchHhHhHH
Q 044797          140 NEFFI-DKKV---------NISGQEIHWGYL  160 (173)
Q Consensus       140 ~~~g~-~~~~---------g~~Gsg~a~~~~  160 (173)
                      +.+|. +.++         +.++++|+|.+.
T Consensus       156 ~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~  186 (279)
T 2f1k_A          156 EPLGVKIYLCTPADHDQAVAWISHLPVMVSA  186 (279)
T ss_dssp             GGGTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH
Confidence            99996 3333         457888888765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=6.1e-19  Score=139.12  Aligned_cols=153  Identities=10%  Similarity=0.010  Sum_probs=121.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc----CCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK----DVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~----~~dvii~~v~~~~~~~~v~~   77 (173)
                      .+||+|||+|.||.++++.|.++|++|++|||++++.+.+.+.|+..+.++.++++    ++|+||+|+| +..+.+++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP-~~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVP-MTAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSC-HHHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCC-HHHHHHHH-
Confidence            47999999999999999999999999999999999999888889887788887765    4799999999 56788887 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeeeec----CHh--
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLISS----SID--  130 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~~g----~~~--  130 (173)
                        +++.+. +++++|+|++++++...+.+.+.+.  +.+|+.. +                    .+.++.    +++  
T Consensus        86 --~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~  160 (341)
T 3ktd_A           86 --DAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDI  160 (341)
T ss_dssp             --HHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCC
T ss_pred             --HHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhh
Confidence              456665 7899999999998877777776552  4555541 1                    233433    345  


Q ss_pred             ------hHHHHHHHHHhhCC-cee---------ecCCCchHhHhHHh
Q 044797          131 ------CFTYLFLVKNEFFI-DKK---------VNISGQEIHWGYLK  161 (173)
Q Consensus       131 ------~~~~~~~~~~~~g~-~~~---------~g~~Gsg~a~~~~~  161 (173)
                            .++.++++++.+|. +.+         ++.+++.|++....
T Consensus       161 ~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~a  207 (341)
T 3ktd_A          161 NSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAET  207 (341)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHH
Confidence                  78899999999994 334         36789999987653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.81  E-value=2.1e-19  Score=137.07  Aligned_cols=143  Identities=14%  Similarity=0.288  Sum_probs=110.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||+|||+|.||..+++.|.+.|++ |.+|||++++.+.+.+. |+....++.++++++|+||+|+|++ ..++++   +
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~---~   86 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL---Q   86 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH---H
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH---H
Confidence            6899999999999999999999998 89999999999888775 8888888889889999999999954 567777   4


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec------------eeeee-ecCHhhHHHHHHHHHhhCC-ce
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE------------RMFLI-SSSIDCFTYLFLVKNEFFI-DK  146 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~------------~~~~~-~g~~~~~~~~~~~~~~~g~-~~  146 (173)
                      ++.+.+++++++++++++.+...  +.+.+.+.+..+...            ..+++ +++++..+.++++++.+|. +.
T Consensus        87 ~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~g~~~~  164 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVY  164 (266)
T ss_dssp             HHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTTCSCEE
T ss_pred             HHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHHhcCCcEE
Confidence            67777889999999998776432  444443322222111            12334 6788889999999999994 55


Q ss_pred             eecCC
Q 044797          147 KVNIS  151 (173)
Q Consensus       147 ~~g~~  151 (173)
                      +++..
T Consensus       165 ~~~~~  169 (266)
T 3d1l_A          165 DADSE  169 (266)
T ss_dssp             ECCHH
T ss_pred             EeCHH
Confidence            66543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.80  E-value=3.8e-19  Score=135.22  Aligned_cols=153  Identities=17%  Similarity=0.193  Sum_probs=111.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +|||+|||+|.||++++++|.++|    ++|++|||++++      .|+....++.++++++|+||+|+| +.++++++ 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~-   75 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVL-   75 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHH-
Confidence            379999999999999999999999    799999999876      477777788888899999999999 56788888 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeec-------e-eeeeec---CHhhHHHHHHHHHhhCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILE-------R-MFLISS---SIDCFTYLFLVKNEFFI  144 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~-------~-~~~~~g---~~~~~~~~~~~~~~~g~  144 (173)
                        +++.+.++++.++.++++.++.   .+.+.+...  .++++..       + +.+..+   +++..+.++++++.+|.
T Consensus        76 --~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~  150 (262)
T 2rcy_A           76 --NNIKPYLSSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGI  150 (262)
T ss_dssp             --HHSGGGCTTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTSEE
T ss_pred             --HHHHHhcCCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence              4576777444445556666665   344555432  2334321       1 334444   56778899999999997


Q ss_pred             ceeec---------CCCchHhHhHHhHhhhHh
Q 044797          145 DKKVN---------ISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       145 ~~~~g---------~~Gsg~a~~~~~~~~~~~  167 (173)
                      ..+++         ..+++|+|.+..++.+.+
T Consensus       151 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~  182 (262)
T 2rcy_A          151 IHEIKEKDMDIATAISGCGPAYVYLFIESLID  182 (262)
T ss_dssp             EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             EEEeCHHHccHHHHHHccHHHHHHHHHHHHHH
Confidence            55553         467888888874444433

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.80  E-value=1.1e-18  Score=143.44  Aligned_cols=162  Identities=10%  Similarity=0.053  Sum_probs=124.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------------CceecChhhhhcCCCE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------------GIRSASPMDAGKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~dv   61 (173)
                      .|||+|||+|.||.++|..|+++|++|++||+++++++.+.+.+                    +..+++++++++++|+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            47999999999999999999999999999999999998886632                    2455677778889999


Q ss_pred             EEEeccCh---------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC---C---cee--ee-----
Q 044797           62 LVVVISHV---------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN---L---TFY--IL-----  119 (173)
Q Consensus        62 ii~~v~~~---------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~---g---~~~--v~-----  119 (173)
                      ||+|+|+|         ..+++++   +++.+.++++++|++.||+.|.+.+++.+.+.+.   |   ..+  ..     
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~  164 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFL  164 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhh
Confidence            99999976         6777777   5688889999999999999898888887776542   2   222  11     


Q ss_pred             -ce----------eeeeecC-H----hhHHHHHHHHHhhCC---ceeecCCCchHhHhHHhHhhhHh
Q 044797          120 -ER----------MFLISSS-I----DCFTYLFLVKNEFFI---DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       120 -~~----------~~~~~g~-~----~~~~~~~~~~~~~g~---~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                       .+          .+++|+. +    ++.+.++++++.++.   ..+++..+++ -+.+++.|.+..
T Consensus       165 ~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~a-e~~Kl~~N~~~a  230 (478)
T 2y0c_A          165 KEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSA-EFTKYAANAMLA  230 (478)
T ss_dssp             CTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHH-HHHHHHHHHHHH
T ss_pred             cccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHH-HHHHHHHHHHHH
Confidence             11          2445654 4    678889999988764   5667776666 456677777653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.80  E-value=6.5e-19  Score=143.34  Aligned_cols=160  Identities=13%  Similarity=0.063  Sum_probs=122.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~dvi   62 (173)
                      |||+|||+|.||.++|..|+++|++|++||+++++++.+.+                   .| +..++++.++++++|+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            48999999999999999999999999999999999988765                   22 45567788888999999


Q ss_pred             EEeccChhh---------hhhhhcCccchhhcCCC---CCEEEEcCCCCHHH-HHHHHHHHhcC-Ccee------eec--
Q 044797           63 VVVISHVDQ---------IDDIFFGHEGVLKGLQK---GAVIILQSTILPSH-MQKLEKTFTGN-LTFY------ILE--  120 (173)
Q Consensus        63 i~~v~~~~~---------~~~v~~~~~~i~~~l~~---g~~ii~~st~~~~~-~~~l~~~l~~~-g~~~------v~~--  120 (173)
                      |+|+|.+.+         +++++   +++.+.+++   +++|++.||..|.+ .+.+.+.+.+. +.++      ...  
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe  157 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence            999997765         77776   567778888   99999999998888 67777776542 3221      111  


Q ss_pred             ----e----------eeeeecC-HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhH
Q 044797          121 ----R----------MFLISSS-IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       121 ----~----------~~~~~g~-~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                          +          .+.+++. +++.+.++++++.++...+++..+++- +.+++.|.+.
T Consensus       158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~~~~~~ae-~~Kl~~N~~~  217 (436)
T 1mv8_A          158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAE-MIKYTCNVWH  217 (436)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEEEEHHHHH-HHHHHHHHHH
T ss_pred             cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEcCCHHHHH-HHHHHHHHHH
Confidence                0          3455665 778889999999999766666655553 4455566654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.79  E-value=1.4e-18  Score=129.36  Aligned_cols=148  Identities=10%  Similarity=0.110  Sum_probs=111.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEE-EcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQA-FEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      ||||+|||+|+||.++++.|.+.|++|++ |||++++.+++.+. |.....+..+.++++|+||+|+| +..+++++   
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp-~~~~~~v~---   98 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVP-YDSIADIV---   98 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESC-GGGHHHHH---
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCC-hHHHHHHH---
Confidence            57999999999999999999999999998 99999998887654 76666666777899999999999 67788887   


Q ss_pred             cchhhcCCCCCEEEEcCCCCH------------HHHHHHHHHHhcCCce----e-----ee---------ceeeeeecCH
Q 044797           80 EGVLKGLQKGAVIILQSTILP------------SHMQKLEKTFTGNLTF----Y-----IL---------ERMFLISSSI  129 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~------------~~~~~l~~~l~~~g~~----~-----v~---------~~~~~~~g~~  129 (173)
                      .++.+ + ++++++++++..+            ...+.+++.+....+.    +     +.         ..++..+.++
T Consensus        99 ~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~  176 (220)
T 4huj_A           99 TQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHS  176 (220)
T ss_dssp             TTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEESCH
T ss_pred             HHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcccCCCCeeEEEeCCCH
Confidence            34555 4 6889999986542            1456777776432110    0     11         0134445567


Q ss_pred             hhHHHHHHHHHhhCC-ceeecCCCchH
Q 044797          130 DCFTYLFLVKNEFFI-DKKVNISGQEI  155 (173)
Q Consensus       130 ~~~~~~~~~~~~~g~-~~~~g~~Gsg~  155 (173)
                      +..+.++++++.+|. ++++|..+++.
T Consensus       177 ~~~~~v~~l~~~~G~~~~~~G~l~~a~  203 (220)
T 4huj_A          177 DANRQVAELISSLGFAPVDLGTLAASG  203 (220)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCSHHHHH
T ss_pred             HHHHHHHHHHHHhCCCeEeeCChhhcc
Confidence            889999999999996 45678776663

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.79  E-value=2.9e-18  Score=136.13  Aligned_cols=143  Identities=12%  Similarity=0.085  Sum_probs=109.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +|||+|||+|.||+++|..|.++|++|++|+|++++.+.+.+.+              +..++++.++++++|+||+++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            46999999999999999999999999999999999998887653              2345678888999999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHH---HHHHHHHHhcCCceeeece-------------eeeeecCHh
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSH---MQKLEKTFTGNLTFYILER-------------MFLISSSID  130 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~---~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~  130 (173)
                       ++.+++++   +++.+.++++++++++++ ..+.+   .+.+.+.+......++..+             +++-+.+++
T Consensus       109 -~~~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~  184 (356)
T 3k96_A          109 -SFAFHEVI---TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ  184 (356)
T ss_dssp             -HHHHHHHH---HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred             -HHHHHHHH---HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence             56888888   578888999999999876 33332   1334444433444444332             334456777


Q ss_pred             hHHHHHHHHHhhCCceee
Q 044797          131 CFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       131 ~~~~~~~~~~~~g~~~~~  148 (173)
                      ..+.++++|+..+...|+
T Consensus       185 ~~~~v~~lf~~~~~rv~~  202 (356)
T 3k96_A          185 FSKDLIERLHGQRFRVYK  202 (356)
T ss_dssp             HHHHHHHHHCCSSEEEEE
T ss_pred             HHHHHHHHhCCCCeeEEE
Confidence            888899999877765555

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.79  E-value=1.2e-18  Score=137.11  Aligned_cols=140  Identities=13%  Similarity=0.037  Sum_probs=101.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-----------CceecChhhhhcCCCEEEEeccCh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-----------GIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      |.+||+|||+|.||++++.+|.++|++|++|||++++.+.+.+.|           +..++++.+ ++++|+||+|+| +
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~   90 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-V   90 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-G
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-H
Confidence            779999999999999999999999999999999999999888765           456677888 889999999999 5


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcC-C--ceeeece-----------eeeeecCHhhHHH
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGN-L--TFYILER-----------MFLISSSIDCFTY  134 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~-g--~~~v~~~-----------~~~~~g~~~~~~~  134 (173)
                      +++++++   +++.+   ++++++++++ ..+.+.+.+.+.+.+. +  ..+...+           ..+..++.+ .+.
T Consensus        91 ~~~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~~~-~~~  163 (335)
T 1z82_A           91 QYIREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGEN-SKE  163 (335)
T ss_dssp             GGHHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEETT-HHH
T ss_pred             HHHHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEehh-HHH
Confidence            7888888   34443   7899999985 4554444445444321 2  1222211           222223333 778


Q ss_pred             HHHHHHhhCCceeec
Q 044797          135 LFLVKNEFFIDKKVN  149 (173)
Q Consensus       135 ~~~~~~~~g~~~~~g  149 (173)
                      ++++|+..|...++.
T Consensus       164 ~~~ll~~~g~~~~~~  178 (335)
T 1z82_A          164 LQKRISTEYFRVYTC  178 (335)
T ss_dssp             HHHHHCCSSEEEEEE
T ss_pred             HHHHhCCCCEEEEec
Confidence            899998888655543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.79  E-value=4.6e-18  Score=131.95  Aligned_cols=146  Identities=10%  Similarity=0.084  Sum_probs=111.7

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      |++||+||| +|.||.++++.|.+.|++|++|||+++.             +..++++++|+||+|+| +..+.+++   
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp-~~~~~~vl---   82 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVP-INLTLETI---   82 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSC-GGGHHHHH---
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCC-HHHHHHHH---
Confidence            557999999 9999999999999999999999998752             46677889999999999 55688888   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-------------eeeeee--cCHhhHHHHHHHHHhhCC
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-------------RMFLIS--SSIDCFTYLFLVKNEFFI  144 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-------------~~~~~~--g~~~~~~~~~~~~~~~g~  144 (173)
                      +++.+.++++++|++.+++.....+.+.+.+   +.+++..             ..+.++  .+++..+.++++++.+|.
T Consensus        83 ~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~  159 (298)
T 2pv7_A           83 ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGA  159 (298)
T ss_dssp             HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTC
T ss_pred             HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCC
Confidence            5677889999999999888877666665543   2344321             122232  257788999999999997


Q ss_pred             ce-e---------ecCCCchHhHh-HHhHhhhHhhhh
Q 044797          145 DK-K---------VNISGQEIHWG-YLKINYFIRVMT  170 (173)
Q Consensus       145 ~~-~---------~g~~Gsg~a~~-~~~~~~~~~~~~  170 (173)
                      .. +         ++.+|++|+|. |.    |+++|.
T Consensus       160 ~~~~~~~~~~d~~~a~~~~~p~~~a~~----l~~~l~  192 (298)
T 2pv7_A          160 KIYQTNATEHDHNMTYIQALRHFSTFA----NGLHLS  192 (298)
T ss_dssp             EEEECCHHHHHHHHHHHTHHHHHHHHH----HHHHHT
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            43 3         25679999984 55    555554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.79  E-value=5.8e-18  Score=130.48  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=107.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----------C--------------CceecChhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----------G--------------GIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----------g--------------~~~~~~~~~~~~   57 (173)
                      +||+|||+|.||+.+|+.|+++|++|++||+++++++++.+.           +              +..+.++.++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999999988766542           1              356778888899


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eeeeec-
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLISS-  127 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~g-  127 (173)
                      ++|+||+++|++.+....++  .++.+.+++++++++.++..+  ..++.+.+..    .|.+++...     +.++.+ 
T Consensus        85 ~aDlVi~av~~~~~~~~~v~--~~l~~~~~~~~il~s~tS~~~--~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~  160 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIY--TKLGELAPAKTIFATNSSTLL--PSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTT  160 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSC--HHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECT
T ss_pred             cCCEEEEeccCcHHHHHHHH--HHHHhhCCCCcEEEECCCCCC--HHHHHhhcCCCcceEEEccCCCcccCceEEEEeCC
Confidence            99999999997644444433  467788999999997655433  2345555532    245554322     334444 


Q ss_pred             --CHhhHHHHHHHHHhhCCc-eeecCCCc
Q 044797          128 --SIDCFTYLFLVKNEFFID-KKVNISGQ  153 (173)
Q Consensus       128 --~~~~~~~~~~~~~~~g~~-~~~g~~Gs  153 (173)
                        +++..+.++++++.+|.. ++++..+.
T Consensus       161 ~t~~~~~~~~~~l~~~~g~~~v~v~~~~~  189 (283)
T 4e12_A          161 KTDPEVYQQVVEFASAIGMVPIELKKEKA  189 (283)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence              578899999999999974 45543333

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.78  E-value=5e-18  Score=136.82  Aligned_cols=159  Identities=14%  Similarity=0.137  Sum_probs=118.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC------------------ceecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG------------------IRSASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~------------------~~~~~~~~~~~~~dvii~   64 (173)
                      |||+|||+|.||.++|.+|.+ |++|++||+++++++.+.+.+.                  ..++++.++++++|+||+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            489999999999999999999 9999999999999998876553                  345567788889999999


Q ss_pred             eccChh----------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee----eece---------
Q 044797           65 VISHVD----------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY----ILER---------  121 (173)
Q Consensus        65 ~v~~~~----------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~----v~~~---------  121 (173)
                      |+|++.          .+++++   +++.+ ++++++|++.||..|.+.+++.+.+.+..+.+    ...+         
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe~~~~G~a~~~~~~~  155 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLRESKALYDNLYP  155 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCCCTTSTTHHHHSC
T ss_pred             ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCccccCcchhhcccCC
Confidence            999763          467777   46777 88999999989999999999998876542221    1111         


Q ss_pred             -eeeeecCH-------hhHHHHHHHHHhhC-C---ceeecCCCchHhHhHHhHhhhHh
Q 044797          122 -MFLISSSI-------DCFTYLFLVKNEFF-I---DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       122 -~~~~~g~~-------~~~~~~~~~~~~~g-~---~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                       .+++|+.+       +..+.+.+++..-+ .   ..+++..+++- |.+++.|.+..
T Consensus       156 ~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae-~~Kl~~N~~~a  212 (402)
T 1dlj_A          156 SRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAE-AVKLFANTYLA  212 (402)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHH-HHHHHHHHHHH
T ss_pred             CEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHH-HHHHHHHHHHH
Confidence             25667766       44455666665422 2   46777777774 56677777643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.77  E-value=2.6e-18  Score=141.13  Aligned_cols=143  Identities=11%  Similarity=0.101  Sum_probs=107.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   58 (173)
                      +||+|||+|.||.+||+.|+++|++|++||+++++++++.+           .|             +..++++ +.+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~   84 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HALAA   84 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHhcC
Confidence            48999999999999999999999999999999998877543           23             2345566 46889


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHh----cCCceeeece-----eeeeec-
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFT----GNLTFYILER-----MFLISS-  127 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~----~~g~~~v~~~-----~~~~~g-  127 (173)
                      ||+||+|+|++.+++..++  .++.+.++++++++ ++|+.++.   ++.+.+.    -.|.||+...     +.++.+ 
T Consensus        85 aDlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~  159 (483)
T 3mog_A           85 ADLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGL  159 (483)
T ss_dssp             CSEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTCCEEEEEECS
T ss_pred             CCEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhCCeEEEecCC
Confidence            9999999998766654443  46778899999985 56777664   3334332    1356776632     445566 


Q ss_pred             --CHhhHHHHHHHHHhhCC-ceeecCC
Q 044797          128 --SIDCFTYLFLVKNEFFI-DKKVNIS  151 (173)
Q Consensus       128 --~~~~~~~~~~~~~~~g~-~~~~g~~  151 (173)
                        ++++.+.++++++.+|+ .+++++.
T Consensus       160 ~Ts~e~~~~~~~l~~~lGk~~v~v~d~  186 (483)
T 3mog_A          160 ATAAEVVEQLCELTLSWGKQPVRCHST  186 (483)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCHHHHHHHHHHHHHhCCEEEEEecc
Confidence              68899999999999997 5567654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.76  E-value=2e-17  Score=122.67  Aligned_cols=147  Identities=13%  Similarity=0.142  Sum_probs=111.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++||+|||+|.||..+++.|.+.|++|++|||++++.+.+.+.|+... +..++++++|+|++|+| +.+.+.++   + 
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~-~~~~~~v~---~-  101 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVF-REHYSSLC---S-  101 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSC-GGGSGGGG---G-
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCC-hHHHHHHH---H-
Confidence            468999999999999999999999999999999999888877677665 67788899999999999 45666665   2 


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHH--------HHHHHHHhcCCceeee-----------c-------eeeeeecCHhhHHHH
Q 044797           82 VLKGLQKGAVIILQSTILPSHM--------QKLEKTFTGNLTFYIL-----------E-------RMFLISSSIDCFTYL  135 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~--------~~l~~~l~~~g~~~v~-----------~-------~~~~~~g~~~~~~~~  135 (173)
                      +.+.+ +++++++++++.+...        +.+.+.+..  .+.+.           .       .+++.+++++..+.+
T Consensus       102 l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~--~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v  178 (215)
T 2vns_A          102 LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPT--CTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAV  178 (215)
T ss_dssp             GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTT--SEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHH
T ss_pred             HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCC--CeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHH
Confidence            44445 7999999999876432        222233321  11110           0       145556688899999


Q ss_pred             HHHHHhhCC-ceeecCCCchHhH
Q 044797          136 FLVKNEFFI-DKKVNISGQEIHW  157 (173)
Q Consensus       136 ~~~~~~~g~-~~~~g~~Gsg~a~  157 (173)
                      +++++.+|. .+++|..|+|...
T Consensus       179 ~~ll~~~G~~~~~~g~~~~~~~~  201 (215)
T 2vns_A          179 SEMALAMGFMPVDMGSLASAWEV  201 (215)
T ss_dssp             HHHHHHTTCEEEECCSGGGHHHH
T ss_pred             HHHHHHcCCceEeecchhhhhHh
Confidence            999999997 5678988888654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.76  E-value=1.8e-18  Score=137.54  Aligned_cols=147  Identities=10%  Similarity=0.024  Sum_probs=106.0

Q ss_pred             CCC-eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhhcCCCEEEEe
Q 044797            1 MAS-KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         1 m~~-~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~dvii~~   65 (173)
                      |+| ||+|||+|.||.+++.+|.++|++|++|||++++.+.+.+.+              +..++++.++++++|+||+|
T Consensus        13 m~M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVila   92 (366)
T 1evy_A           13 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   92 (366)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEEC
T ss_pred             hccCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEEC
Confidence            334 999999999999999999999999999999999988887643              34456788888999999999


Q ss_pred             ccChhhhhhhhcC-ccchhhcCCC-CCEEEEcC-CCCHHHHHHHHHHHhcC-Cc---eeeece-------------eeee
Q 044797           66 ISHVDQIDDIFFG-HEGVLKGLQK-GAVIILQS-TILPSHMQKLEKTFTGN-LT---FYILER-------------MFLI  125 (173)
Q Consensus        66 v~~~~~~~~v~~~-~~~i~~~l~~-g~~ii~~s-t~~~~~~~~l~~~l~~~-g~---~~v~~~-------------~~~~  125 (173)
                      +| +.++++++.. +.++.+.+++ ++++++++ +..+.+.+.+.+.+.+. +.   .+...+             +.+.
T Consensus        93 v~-~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~  171 (366)
T 1evy_A           93 IP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIA  171 (366)
T ss_dssp             CC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred             CC-hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEe
Confidence            99 5778888831 1117777778 89999988 45554444555555443 32   122111             2223


Q ss_pred             ecCHhhHHHHHHHHHhh--CCceee
Q 044797          126 SSSIDCFTYLFLVKNEF--FIDKKV  148 (173)
Q Consensus       126 ~g~~~~~~~~~~~~~~~--g~~~~~  148 (173)
                      +++++..+.++++|+..  +...+.
T Consensus       172 ~~~~~~~~~v~~ll~~~g~g~~~~~  196 (366)
T 1evy_A          172 SADINVARRLQRIMSTGDRSFVCWA  196 (366)
T ss_dssp             CSSHHHHHHHHHHHSCTTSSEEEEE
T ss_pred             cCCHHHHHHHHHHhcCCCCeEEEEE
Confidence            44667788899999988  654443

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.76  E-value=6.3e-18  Score=134.95  Aligned_cols=144  Identities=8%  Similarity=0.077  Sum_probs=103.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCChH-----HHHHHHHc--------------CCceecChhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISDP-----LVDKFFML--------------GGIRSASPMD   54 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~   54 (173)
                      |||||+|||+|.||++++..|.++|       ++|++|||+++     +.+.+.+.              ++..++++.+
T Consensus        20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS   99 (375)
T ss_dssp             SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence            6789999999999999999999999       99999999988     88777652              2345667788


Q ss_pred             hhcCCCEEEEeccChhhhhhhhcCccchhh----cCCCCCEEEEcCCC-CHH--HHHHHHHHHhc---CCceeeece---
Q 044797           55 AGKDVSALVVVISHVDQIDDIFFGHEGVLK----GLQKGAVIILQSTI-LPS--HMQKLEKTFTG---NLTFYILER---  121 (173)
Q Consensus        55 ~~~~~dvii~~v~~~~~~~~v~~~~~~i~~----~l~~g~~ii~~st~-~~~--~~~~l~~~l~~---~g~~~v~~~---  121 (173)
                      +++++|+||+|+| ++++++++   +++.+    .+++++++++++++ .+.  +.+.+.+.+.+   ....+...+   
T Consensus       100 a~~~aDvVilav~-~~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a  175 (375)
T 1yj8_A          100 VINDADLLIFIVP-CQYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIA  175 (375)
T ss_dssp             HHTTCSEEEECCC-HHHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCH
T ss_pred             HHcCCCEEEEcCC-HHHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchH
Confidence            8899999999999 67888888   46777    78899999999854 331  12223232222   122222211   


Q ss_pred             ----------eeeeecCHhhHHHHHHHHHhhCCceee
Q 044797          122 ----------MFLISSSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       122 ----------~~~~~g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                                +++.+++++..+.++++|+..|...+.
T Consensus       176 ~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~  212 (375)
T 1yj8_A          176 MDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINC  212 (375)
T ss_dssp             HHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEE
T ss_pred             HHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEE
Confidence                      233345667788899999888765444

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.61  E-value=6.6e-20  Score=134.89  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=109.5

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |.|||+|||+|+||..++++|.+.|++|++|||+++ .+.+.+.++... ++.++++++|+||+++|+ ++++.++    
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~-~~~~~v~----   90 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHR-EHYDFLA----   90 (201)
Confidence            347899999999999999999999999999999987 555555566655 677888899999999995 5677665    


Q ss_pred             chhhcCCCCCEEEEcCCCCHH------HHHHHHHHHhcCCc-e---e----eec-e-------eeeeecCHhhHHHHHHH
Q 044797           81 GVLKGLQKGAVIILQSTILPS------HMQKLEKTFTGNLT-F---Y----ILE-R-------MFLISSSIDCFTYLFLV  138 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~------~~~~l~~~l~~~g~-~---~----v~~-~-------~~~~~g~~~~~~~~~~~  138 (173)
                      ++.+ +.++++|++++++.+.      ..+.+.+.+....+ +   .    ... +       +++.+++++.++.++++
T Consensus        91 ~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~l  169 (201)
T 2yjz_A           91 ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDI  169 (201)
Confidence            2332 4578999999988762      23445554432111 0   0    111 1       34456667788999999


Q ss_pred             HHhhCC-ceeecCCCchHhHh
Q 044797          139 KNEFFI-DKKVNISGQEIHWG  158 (173)
Q Consensus       139 ~~~~g~-~~~~g~~Gsg~a~~  158 (173)
                      |+.+|. ..++|..|+|....
T Consensus       170 l~~~G~~~~~~G~l~~a~~~e  190 (201)
T 2yjz_A          170 ARTLGLTPLDQGSLVAAKEIE  190 (201)
Confidence            999996 56899999886543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.75  E-value=2.7e-17  Score=127.70  Aligned_cols=144  Identities=11%  Similarity=0.050  Sum_probs=102.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-----------HcC------------------CceecCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-----------MLG------------------GIRSASP   52 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g------------------~~~~~~~   52 (173)
                      ++||+|||+|.||++||..|+++|++|++||+++++++++.           +.|                  +..++++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            46899999999999999999999999999999998876532           122                  3446677


Q ss_pred             hhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHh----cCCceeeece-----e
Q 044797           53 MDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFT----GNLTFYILER-----M  122 (173)
Q Consensus        53 ~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~----~~g~~~v~~~-----~  122 (173)
                      .+++++||+||+|+|++.+++..++  .++.+.+++++++++.++ ..+.   ++.+.+.    -.+.+++...     +
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~--~~l~~~~~~~~iv~s~ts~i~~~---~l~~~~~~~~~~~g~h~~~P~~~~~~~  169 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQIT---SIANATTRQDRFAGLHFFNPVPVMKLV  169 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCCcccEEEEecCCCcccCceE
Confidence            7789999999999997655543333  457777888998886544 4433   3444432    1244554321     3


Q ss_pred             eeeec---CHhhHHHHHHHHHhhCCc-eeecC
Q 044797          123 FLISS---SIDCFTYLFLVKNEFFID-KKVNI  150 (173)
Q Consensus       123 ~~~~g---~~~~~~~~~~~~~~~g~~-~~~g~  150 (173)
                      .++.+   ++++.+.++++++.+|.. .+++.
T Consensus       170 ~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~  201 (302)
T 1f0y_A          170 EVIKTPMTSQKTFESLVDFSKALGKHPVSCKD  201 (302)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCceEEecC
Confidence            34454   678899999999999964 45554

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.74  E-value=3.5e-17  Score=133.29  Aligned_cols=143  Identities=8%  Similarity=0.009  Sum_probs=104.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHH--------HHHHcCC-------------ceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVD--------KFFMLGG-------------IRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~--------~~~~~g~-------------~~~~~~~~~~~~~d   60 (173)
                      ++||+|||+|.||.+||..|+++|++|++||+++++..        ++.+.|.             ..+++++ .+++||
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aD  132 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCD  132 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCC
Confidence            36899999999999999999999999999999998432        2333332             3466664 688999


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhc----CCceeeece-----eeeeec---
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTG----NLTFYILER-----MFLISS---  127 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~g---  127 (173)
                      +||+|+|++.+++..++  .++.+.+++++++++. |+.++   .++.+.+.+    .|.+|++..     +-++.+   
T Consensus       133 lVIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i---~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~T  207 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDL---NEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHT  207 (460)
T ss_dssp             EEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH---HHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSSC
T ss_pred             EEEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhH---HHHHHhccCCcceEEEEecchhhhCCEEEEEeCCCC
Confidence            99999998766665554  4688889999999765 44443   344444432    356666543     223333   


Q ss_pred             CHhhHHHHHHHHHhhCC-ceeecC
Q 044797          128 SIDCFTYLFLVKNEFFI-DKKVNI  150 (173)
Q Consensus       128 ~~~~~~~~~~~~~~~g~-~~~~g~  150 (173)
                      ++++++.++++++.+|+ ++++++
T Consensus       208 s~e~~~~~~~l~~~lGk~~v~v~d  231 (460)
T 3k6j_A          208 SSQAIATAFQACESIKKLPVLVGN  231 (460)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEESS
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEec
Confidence            68899999999999997 456664

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.74  E-value=3.1e-17  Score=128.61  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=111.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC--ChHHHHHHHHcCC-----------ceec--ChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI--SDPLVDKFFMLGG-----------IRSA--SPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~--~~~~~~~~~~~g~-----------~~~~--~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+|.||++++..|.++|++|++|||  ++++.+.+.+.+.           ...+  ++.++++++|+||+|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4899999999999999999999999999999  9999988877653           3344  66677889999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCC----CHHHHHHHHHHHhcC-Cc--e--eeece------------eeeee
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTI----LPSHMQKLEKTFTGN-LT--F--YILER------------MFLIS  126 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~----~~~~~~~l~~~l~~~-g~--~--~v~~~------------~~~~~  126 (173)
                      + .++++++   +++.+ ++++++|++++++    .|.+.+.+.+.+.+. +.  .  ....+            .+.++
T Consensus        81 ~-~~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~  155 (335)
T 1txg_A           81 T-DGVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS  155 (335)
T ss_dssp             G-GGHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred             h-HHHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEEE
Confidence            5 5778887   46778 8889999998754    334555667776552 32  1  11110            23344


Q ss_pred             c-CHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhh
Q 044797          127 S-SIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYF  165 (173)
Q Consensus       127 g-~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~  165 (173)
                      + +++..+.++++|+..|...+....=.+..|.++..|..
T Consensus       156 ~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~  195 (335)
T 1txg_A          156 SPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVY  195 (335)
T ss_dssp             CSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHH
Confidence            3 56778889999988876544432223334444444433

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.73  E-value=1.6e-17  Score=129.31  Aligned_cols=161  Identities=11%  Similarity=-0.001  Sum_probs=112.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-----C-CeEEEEcCChHHHHHHHH-cCCceec-------------ChhhhhcCCCE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-----G-YKVQAFEISDPLVDKFFM-LGGIRSA-------------SPMDAGKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-----g-~~V~~~d~~~~~~~~~~~-~g~~~~~-------------~~~~~~~~~dv   61 (173)
                      +|||+|||+|.||+.++.+|.++     | ++|++|+| +++.+.+.+ .|+....             +..+.++++|+
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   86 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDY   86 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCE
Confidence            47999999999999999999998     9 99999999 888888887 6755432             33456788999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeeec-------------eeee
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYILE-------------RMFL  124 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~~-------------~~~~  124 (173)
                      ||+|+|+ .++++++   +++.+.+.++++|++++++ +...+.+.+.+.+.    +..+...             +...
T Consensus        87 vil~vk~-~~~~~v~---~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~  161 (317)
T 2qyt_A           87 ILFCTKD-YDMERGV---AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELF  161 (317)
T ss_dssp             EEECCSS-SCHHHHH---HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEecCc-ccHHHHH---HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceE
Confidence            9999995 4577787   4677778888999998765 33345566655432    2222111             1222


Q ss_pred             -eecC-----HhhHHHHHHHHHhhCCce-eecCCCchHhHhHHhHhhhHhhhh
Q 044797          125 -ISSS-----IDCFTYLFLVKNEFFIDK-KVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       125 -~~g~-----~~~~~~~~~~~~~~g~~~-~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                       ++..     .+.. .+.++|+..|... +.++. .+..|.++++|..+.+++
T Consensus       162 ~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di-~~~~~~Kl~~N~~~~~~~  212 (317)
T 2qyt_A          162 YFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDI-DWYIMKKFMMISVTATAT  212 (317)
T ss_dssp             EEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCH-HHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHH-HHHHHHHHHHHHhhHHHH
Confidence             4432     4455 7899999998654 44444 345677788887765543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.72  E-value=2.2e-16  Score=116.40  Aligned_cols=156  Identities=8%  Similarity=0.014  Sum_probs=114.0

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-C-------CceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-G-------GIRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      |||+|+| +|.||+.+++.|.+.|++|++|||++++.+.+.+. +       +. ..+..++++++|+||+++| +..++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~-~~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIP-WEHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSC-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCC-hhhHH
Confidence            4899999 99999999999999999999999999988776543 2       23 3567788889999999999 56677


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCH------------HHHHHHHHHHhcCCceeeec-----------------eeee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILP------------SHMQKLEKTFTGNLTFYILE-----------------RMFL  124 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~------------~~~~~l~~~l~~~g~~~v~~-----------------~~~~  124 (173)
                      +++   +++.+.+ ++++++++++...            ...+++.+.+..  .+++..                 .+.+
T Consensus        79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  152 (212)
T 1jay_A           79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--EKVVSALHTIPAARFANLDEKFDWDVP  152 (212)
T ss_dssp             HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--SCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred             HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--CeEEEEccchHHHHhhCcCCCCCccEE
Confidence            776   3455556 4899999987322            235777777752  444432                 1345


Q ss_pred             eecC-HhhHHHHHHHHHhh-CC-ceeecCCCchHhHhHHhHhhhHh
Q 044797          125 ISSS-IDCFTYLFLVKNEF-FI-DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       125 ~~g~-~~~~~~~~~~~~~~-g~-~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      ++++ ++..+.++++++.+ |. ..+++..+++.. .+...|.++.
T Consensus       153 ~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~-~k~~~~~~~~  197 (212)
T 1jay_A          153 VCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRL-VESLTPLILN  197 (212)
T ss_dssp             EEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHH-HHTHHHHHHH
T ss_pred             EECCcHHHHHHHHHHHHHcCCCCceeccchhHHHH-hcchHHHHHH
Confidence            5665 78889999999999 96 457887776644 3344444443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.71  E-value=4.9e-18  Score=130.39  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=92.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeE-EEEcCChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKV-QAFEISDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      |+|||+|||+|+||.++++.|.++ ++| .+|||++++.+++.+ .+. .+.+++++++++|+||+|+|+ +...+++  
T Consensus         1 M~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~-~~~~~v~--   75 (276)
T 2i76_A            1 MSLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPD-RYIKTVA--   75 (276)
T ss_dssp             ---CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCT-TTHHHHH--
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCCh-HHHHHHH--
Confidence            788999999999999999999988 999 599999999888765 366 666777888899999999995 4567776  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce----eee---------ceeeeeecCHhhHHHHHHHHHhhC-C
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF----YIL---------ERMFLISSSIDCFTYLFLVKNEFF-I  144 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~----~v~---------~~~~~~~g~~~~~~~~~~~~~~~g-~  144 (173)
                       .++.   +++++++++++..+...  +.+.. ..+.+    +..         ...++++++++.++.++++++.+| .
T Consensus        76 -~~l~---~~~~ivi~~s~~~~~~~--l~~~~-~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~  148 (276)
T 2i76_A           76 -NHLN---LGDAVLVHCSGFLSSEI--FKKSG-RASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGK  148 (276)
T ss_dssp             -TTTC---CSSCCEEECCSSSCGGG--GCSSS-EEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSC
T ss_pred             -HHhc---cCCCEEEECCCCCcHHH--HHHhh-ccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCC
Confidence             2343   67889999986655432  11111 00111    001         114667788888999999999999 4


Q ss_pred             ceeecC
Q 044797          145 DKKVNI  150 (173)
Q Consensus       145 ~~~~g~  150 (173)
                      +.+++.
T Consensus       149 ~~~v~~  154 (276)
T 2i76_A          149 YFVIPS  154 (276)
T ss_dssp             EEECCG
T ss_pred             EEEECH
Confidence            666654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.70  E-value=8.4e-17  Score=137.79  Aligned_cols=144  Identities=13%  Similarity=0.045  Sum_probs=105.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcC-------------CceecChhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLG-------------GIRSASPMDAGK   57 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~   57 (173)
                      ++||+|||+|.||++||..|+++|++|++||+++++++..           .+.|             ++.++++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            4689999999999999999999999999999999887653           2233             2345566 6788


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhc----CCceeeece-----eeeeec
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTG----NLTFYILER-----MFLISS  127 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~g  127 (173)
                      +||+||+|+|++.+++..++  .++.+.+++++++++.+ +.++.   ++.+.+..    .|.||++..     +.++.+
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~---~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g  467 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS---LLAKALKRPENFVGMHFFNPVHMMPLVEVIRG  467 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEEEECCSSTTTCCEEEEEEC
T ss_pred             CCCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH---HHHHHhcCccceEEEEccCCcccCceEEEEEC
Confidence            99999999998776665554  45778889999988654 44443   34443321    356665432     333444


Q ss_pred             ---CHhhHHHHHHHHHhhCC-ceeecCC
Q 044797          128 ---SIDCFTYLFLVKNEFFI-DKKVNIS  151 (173)
Q Consensus       128 ---~~~~~~~~~~~~~~~g~-~~~~g~~  151 (173)
                         ++++++.++++++.+|+ ++++++.
T Consensus       468 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~  495 (715)
T 1wdk_A          468 EKSSDLAVATTVAYAKKMGKNPIVVNDC  495 (715)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCHHHHHHHHHHHHHhCCEeEEEcCC
Confidence               68899999999999997 4567653

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.69  E-value=6.4e-16  Score=122.17  Aligned_cols=141  Identities=13%  Similarity=0.085  Sum_probs=100.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCChH-----HHHHHHHc--------------CCceecChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISDP-----LVDKFFML--------------GGIRSASPMDAG   56 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~~~   56 (173)
                      |||+|||+|.||++++..|.++|       ++|++|||+++     +.+.+.+.              ++..++++.+++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA   88 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence            69999999999999999999999       99999999988     77776642              123456777888


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC---HHH----HHHHHHHHhcCCceeeece--------
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL---PSH----MQKLEKTFTGNLTFYILER--------  121 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~---~~~----~~~l~~~l~~~g~~~v~~~--------  121 (173)
                      +++|+||+|+| ++.+++++   +++.+.+++++++++++++.   |.+    .+.+.+.+. ........+        
T Consensus        89 ~~aD~Vilav~-~~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a~~v~~  163 (354)
T 1x0v_A           89 EDADILIFVVP-HQFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANIASEVAD  163 (354)
T ss_dssp             TTCSEEEECCC-GGGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCCHHHHHT
T ss_pred             cCCCEEEEeCC-HHHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCcHHHHHh
Confidence            99999999999 56788888   56778888999999998743   222    122333332 111111111        


Q ss_pred             -----eeeeecCHhhHHHHHHHHHhhCCceee
Q 044797          122 -----MFLISSSIDCFTYLFLVKNEFFIDKKV  148 (173)
Q Consensus       122 -----~~~~~g~~~~~~~~~~~~~~~g~~~~~  148 (173)
                           ..+.+.+++..+.++++|+..|...++
T Consensus       164 g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~  195 (354)
T 1x0v_A          164 EKFCETTIGCKDPAQGQLLKELMQTPNFRITV  195 (354)
T ss_dssp             TCCEEEEEECSSHHHHHHHHHHHCBTTEEEEE
T ss_pred             cCCceEEEEECCHHHHHHHHHHhCCCCEEEEE
Confidence                 223344567788899999888765544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.69  E-value=1.2e-17  Score=128.40  Aligned_cols=161  Identities=17%  Similarity=0.119  Sum_probs=109.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC---C----ceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG---G----IRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---~----~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |||+|||+|.||+.++..|.++|++|++|||++++.+.+...+   .    ....+..+.++++|+||+|+|+ .+++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~-~~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecH-HhHHHH
Confidence            4899999999999999999999999999999987655443322   1    1112334667889999999995 567888


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCcee----eec--------eeeee---ecCHhhHHHHHHH
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFY----ILE--------RMFLI---SSSIDCFTYLFLV  138 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~----v~~--------~~~~~---~g~~~~~~~~~~~  138 (173)
                      +   +++.+.++++++|++.+++. ...+.+.+.+.+  .|..+    ...        +.+.+   +++++..+.++++
T Consensus        80 ~---~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~~l  155 (291)
T 1ks9_A           80 V---KSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADI  155 (291)
T ss_dssp             H---HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHHH
T ss_pred             H---HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHHHH
Confidence            7   56778888999999986643 333444444433  22221    111        11222   2344567889999


Q ss_pred             HHhhCCce-eecCCCchHhHhHHhHhhhHhhh
Q 044797          139 KNEFFIDK-KVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       139 ~~~~g~~~-~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                      |+..|... +.+..+.+ .|.++++|..+..+
T Consensus       156 l~~~g~~~~~~~~~~~~-~~~Kl~~n~~~n~~  186 (291)
T 1ks9_A          156 LQTVLPDVAWHNNIRAE-LWRKLAVNCVINPL  186 (291)
T ss_dssp             HHTTSSCEEECTTHHHH-HHHHHHHHHHHHHH
T ss_pred             HHhcCCCCeecHHHHHH-HHHHHeeeeeecHH
Confidence            99999754 45555444 67788888887543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.69  E-value=2.7e-16  Score=123.98  Aligned_cols=151  Identities=15%  Similarity=0.038  Sum_probs=109.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE-   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~-   80 (173)
                      ++|+|||+|.||.+++++|.+.|++|++|+|++++ .+.+.+.|+... ++.++++++|+|++|+| +....+++   + 
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp-~~~~~~v~---~~   91 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTP-DEFQGRLY---KE   91 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSC-HHHHHHHH---HH
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCC-cHHHHHHH---HH
Confidence            68999999999999999999999999999999766 556666787766 78888999999999999 45567777   4 


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-----------------e-eeee----ecCHhhHHHHHHH
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-----------------R-MFLI----SSSIDCFTYLFLV  138 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-----------------~-~~~~----~g~~~~~~~~~~~  138 (173)
                      ++.+.+++++++++.++..  .  .+.+.....++.++..                 + ..++    ..+++..+.++.+
T Consensus        92 ~i~~~l~~~~ivi~~~gv~--~--~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l  167 (338)
T 1np3_A           92 EIEPNLKKGATLAFAHGFS--I--HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSY  167 (338)
T ss_dssp             HTGGGCCTTCEEEESCCHH--H--HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHH
T ss_pred             HHHhhCCCCCEEEEcCCch--h--HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHH
Confidence            6778899999999875422  1  2222211234444321                 1 1222    2345677889999


Q ss_pred             HHhhCC----cee---------------ecCCCchHhHhHHhH
Q 044797          139 KNEFFI----DKK---------------VNISGQEIHWGYLKI  162 (173)
Q Consensus       139 ~~~~g~----~~~---------------~g~~Gsg~a~~~~~~  162 (173)
                      ++.+|.    +.+               +...|+.|++.+..+
T Consensus       168 ~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~  210 (338)
T 1np3_A          168 ACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGF  210 (338)
T ss_dssp             HHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHH
Confidence            999986    222               256788999988743

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.68  E-value=4.3e-16  Score=115.04  Aligned_cols=140  Identities=9%  Similarity=0.061  Sum_probs=103.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .+||+|||+|.||+++++.|.++|++|++|||+++                  .++++|+|++|+| +..+++++   ++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~---~~   76 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA---KQ   76 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH---HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH---HH
Confidence            47899999999999999999999999999999875                  4678999999999 77788887   45


Q ss_pred             hhhcCCCCCEEEEcCCCCH--H-------H----HHHHHHHHhcCCceeeec------------------e-eeeeecC-
Q 044797           82 VLKGLQKGAVIILQSTILP--S-------H----MQKLEKTFTGNLTFYILE------------------R-MFLISSS-  128 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~--~-------~----~~~l~~~l~~~g~~~v~~------------------~-~~~~~g~-  128 (173)
                      +.+.++ +++++++++..+  .       .    .+.+++.+.  +.+++..                  . .+.++++ 
T Consensus        77 l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~  153 (209)
T 2raf_A           77 YATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGND  153 (209)
T ss_dssp             THHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEEESC
T ss_pred             HHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEcCCC
Confidence            666677 999999987432  1       1    455666553  3343331                  1 3334554 


Q ss_pred             HhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhhhHh
Q 044797          129 IDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      ++..+.++++++.+|. ..+++..+.+... +.+.|.++.
T Consensus       154 ~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~-K~i~~l~~~  192 (209)
T 2raf_A          154 DSAKQRFTRALADSPLEVKDAGKLKRAREL-EAMGFMQMT  192 (209)
T ss_dssp             HHHHHHHHHHTTTSSCEEEEEESGGGHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCceEeCCCHhHHHHh-cchHHHHHH
Confidence            5788899999999994 6788888887664 455555443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.68  E-value=6e-16  Score=132.66  Aligned_cols=144  Identities=16%  Similarity=0.143  Sum_probs=104.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC-------------CceecChhhhhc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG-------------GIRSASPMDAGK   57 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   57 (173)
                      ++||+|||+|.||+.||..|+++|++|++||++++++++..+           .|             ++.++++ +.++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  390 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR  390 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence            368999999999999999999999999999999988765421           12             2345566 5788


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhc----CCceeeece-----eeeeec
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTG----NLTFYILER-----MFLISS  127 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~g  127 (173)
                      +||+||+|+|++.++++.++  .++.+.+++++++++.+ +..+.   ++.+.+..    .|.||++..     +.++.|
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~---~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g  465 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLN---KIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT  465 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTCSCTTTEEEEEECSSTTTCCEEEEEEC
T ss_pred             CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH---HHHHHhcCCCCEEEecCCCCcccCceEEEEEC
Confidence            99999999998776665554  45778899999887654 44443   34443322    356666532     334454


Q ss_pred             ---CHhhHHHHHHHHHhhCC-ceeecCC
Q 044797          128 ---SIDCFTYLFLVKNEFFI-DKKVNIS  151 (173)
Q Consensus       128 ---~~~~~~~~~~~~~~~g~-~~~~g~~  151 (173)
                         ++++++.+.++++.+|+ ++++++.
T Consensus       466 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~  493 (725)
T 2wtb_A          466 NHTSAQVIVDLLDVGKKIKKTPVVVGNC  493 (725)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCHHHHHHHHHHHHHhCCEEEEECCC
Confidence               78899999999999997 4567653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.66  E-value=1e-15  Score=125.39  Aligned_cols=144  Identities=18%  Similarity=0.097  Sum_probs=102.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC-----------CceecChhhhhcCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG-----------GIRSASPMDAGKDV   59 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-----------~~~~~~~~~~~~~~   59 (173)
                      ++||+|||+|.||..||..|+++|++|++||+++++++...+           .|           ...+.++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            368999999999999999999999999999999988765432           11           1234555 567899


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eeee---ec
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLI---SS  127 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~---~g  127 (173)
                      |+||+|+|++.+++..++  .++.+.++++++|+++ |.++... ++.+.+..    .|.||+...     +.++   .+
T Consensus       116 DlVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~sn-Ts~~~~~-~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t  191 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTN-TSALNVD-DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYS  191 (463)
T ss_dssp             SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEEC-CSSSCHH-HHHTTSSCGGGEEEEEECSSTTTCCEEEEEECSSC
T ss_pred             CEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeC-CCCcCHH-HHHHHhcCCcceEEeecCCCcccceeEEEeCCCCC
Confidence            999999997655544443  4577788999999874 4444333 55555432    356665321     2233   35


Q ss_pred             CHhhHHHHHHHHHhhCC-ceeecC
Q 044797          128 SIDCFTYLFLVKNEFFI-DKKVNI  150 (173)
Q Consensus       128 ~~~~~~~~~~~~~~~g~-~~~~g~  150 (173)
                      ++++++.++++++.+|+ .++++.
T Consensus       192 ~~e~~~~~~~l~~~lGk~~v~v~~  215 (463)
T 1zcj_A          192 SPTTIATVMSLSKKIGKIGVVVGN  215 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred             CHHHHHHHHHHHHHhCCEEEEECC
Confidence            78899999999999996 445553

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.66  E-value=4.8e-15  Score=115.58  Aligned_cols=161  Identities=15%  Similarity=0.102  Sum_probs=113.8

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce--------------ecChhhhhcCCCEEEEec
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR--------------SASPMDAGKDVSALVVVI   66 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~dvii~~v   66 (173)
                      |+|||+|||+|.||+.++..|.++|++|++|+|++  .+.+.+.|...              +++.+ .++.+|+||+++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~vilav   77 (312)
T 3hn2_A            1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGL   77 (312)
T ss_dssp             ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCEEEEec
Confidence            78999999999999999999999999999999986  36666655321              23443 467899999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eee-------------eceeeeeec--
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYI-------------LERMFLISS--  127 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v-------------~~~~~~~~g--  127 (173)
                      | +.++++++   +.+.+.+.++++|++..++- +..+.+.+.+....+    .+.             ....+.++.  
T Consensus        78 k-~~~~~~~l---~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~  152 (312)
T 3hn2_A           78 K-TFANSRYE---ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFL  152 (312)
T ss_dssp             C-GGGGGGHH---HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESS
T ss_pred             C-CCCcHHHH---HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCC
Confidence            9 66788888   56888899999999987753 223456666643211    111             111333432  


Q ss_pred             --CHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhh
Q 044797          128 --SIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       128 --~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                        +.+..+.+..+|+..|...++-..=.+..|.+++.|..+.++
T Consensus       153 ~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l  196 (312)
T 3hn2_A          153 PRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGL  196 (312)
T ss_dssp             CCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHH
Confidence              234566788888888887787777778888888888876654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.65  E-value=2.7e-16  Score=124.31  Aligned_cols=112  Identities=12%  Similarity=0.070  Sum_probs=98.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++.+.+.+.+.|+....+++++++++|+|++++|....++.++.  .+.
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~  242 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFN--KEL  242 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhc--HHH
Confidence            689999999999999999999999999999997666666667888778899999999999999997777777763  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|+++||++++.+.+.+.+.+.+++..+.
T Consensus       243 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  276 (351)
T 3jtm_A          243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG  276 (351)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc
Confidence            7889999999999999999999999999876664

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.64  E-value=5.4e-16  Score=122.70  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|||||+|+||..+|+.+. ..|++|.+|||++++.+...+.|+....+++++++++|+|++++|....++.++.  .+
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~--~~  241 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID--EA  241 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC--HH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh--HH
Confidence            58999999999999999999 9999999999998766655556777666788999999999999998777777763  24


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ..+.++++++++|++++.+.+.+.+.+.+++..+
T Consensus       242 ~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i  275 (348)
T 2w2k_A          242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKL  275 (348)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred             HHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCc
Confidence            6678999999999999988888899999987544

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.64  E-value=1.1e-14  Score=113.83  Aligned_cols=162  Identities=15%  Similarity=0.071  Sum_probs=113.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC---------------ceecChhhhhcCCCEEEEe
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG---------------IRSASPMDAGKDVSALVVV   65 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~dvii~~   65 (173)
                      |+|||+|||+|.||+.++..|.++|++|++|+|++.  +.+.+.|+               ..+++++++.+.+|+||+|
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            789999999999999999999999999999999872  56655442               1234566666689999999


Q ss_pred             ccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eeee-----c--------eeeeee--
Q 044797           66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYIL-----E--------RMFLIS--  126 (173)
Q Consensus        66 v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v~-----~--------~~~~~~--  126 (173)
                      +|. .++++++   +.+.+.+.++++|++..++-. ..+.+.+.+....+    .+..     .        ..+.++  
T Consensus        79 vK~-~~~~~~l---~~l~~~l~~~t~Iv~~~nGi~-~~~~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~  153 (320)
T 3i83_A           79 IKV-VEGADRV---GLLRDAVAPDTGIVLISNGID-IEPEVAAAFPDNEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNY  153 (320)
T ss_dssp             CCC-CTTCCHH---HHHTTSCCTTCEEEEECSSSS-CSHHHHHHSTTSCEEEEEEEEEEEEEETTEEEEEEEEEEEEEES
T ss_pred             cCC-CChHHHH---HHHHhhcCCCCEEEEeCCCCC-hHHHHHHHCCCCcEEEEEEEeceEEcCCCEEEECCCCEEEEecC
Confidence            994 5677777   567788889999998876532 22456666654322    1211     0        123333  


Q ss_pred             --cCHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhh
Q 044797          127 --SSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       127 --g~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                        .+.+..+.+..+|+..|...++-..=.+..|.+++.|..+..+
T Consensus       154 ~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~l  198 (320)
T 3i83_A          154 PGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPL  198 (320)
T ss_dssp             SSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHH
Confidence              2234567788888888877777776778888888888665444

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.63  E-value=4.9e-16  Score=122.19  Aligned_cols=110  Identities=16%  Similarity=0.138  Sum_probs=93.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|++|||++++.+.+.+.|+... +++++++++|+|++++|.+..++.++.  .++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~--~~~  232 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCN--KDF  232 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhC--HHH
Confidence            58999999999999999999999999999998876666666676665 788999999999999997766777763  346


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+.+++++++++++++.+.+.+.+.+.+++.++
T Consensus       233 ~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i  265 (330)
T 2gcg_A          233 FQKMKETAVFINISRGDVVNQDDLYQALASGKI  265 (330)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred             HhcCCCCcEEEECCCCcccCHHHHHHHHHcCCc
Confidence            678999999999999988888889998877544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.63  E-value=5.8e-16  Score=122.54  Aligned_cols=111  Identities=13%  Similarity=0.035  Sum_probs=96.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++.. +...+.|++...+++++++++|+|++++|....++.++.  .+.
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~~  237 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIIT--VAD  237 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhC--HHH
Confidence            58999999999999999999999999999998643 455667888777899999999999999997777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|+++||++++.+.+.+.+.+.|++..+.
T Consensus       238 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  271 (352)
T 3gg9_A          238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPG  271 (352)
T ss_dssp             HTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS
T ss_pred             HhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc
Confidence            7889999999999999988889999999876664

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.63  E-value=2.8e-16  Score=121.29  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=92.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++.+     ......+++++++++|+|++++|..+.++.++.  .+.
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  195 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVN--SRL  195 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEeccccccc-----cccccCChHHHhhccCeEEEEeeccccchhhhh--HHH
Confidence            6899999999999999999999999999999876532     244566899999999999999997777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|+++||++++.+.+.+.+.+.+++.++.
T Consensus       196 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  229 (290)
T 3gvx_A          196 LANARKNLTIVNVARADVVSKPDMIGFLKERSDV  229 (290)
T ss_dssp             HTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             HhhhhcCceEEEeehhcccCCcchhhhhhhccce
Confidence            7889999999999999999999999999876654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.63  E-value=1.7e-14  Score=112.75  Aligned_cols=161  Identities=13%  Similarity=0.130  Sum_probs=116.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-------------eecChhhhhcCCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-------------RSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~dvii~~v~~   68 (173)
                      ++||+|||+|.||+.+|..|.++|++|++| +++++.+.+.+.|..             .+++.++ ++++|+||+|+|.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~   96 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKS   96 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEccc
Confidence            579999999999999999999999999999 999999888776532             2344443 5789999999994


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh-cC--Cceee----e---------ceeeeeecCHhhH
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT-GN--LTFYI----L---------ERMFLISSSIDCF  132 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~-~~--g~~~v----~---------~~~~~~~g~~~~~  132 (173)
                       .++++++   +++.+.+.++++|++..++-. ..+.+.+.+. +.  ++.+.    .         ...+.++. .+..
T Consensus        97 -~~~~~~l---~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~  170 (318)
T 3hwr_A           97 -TDTQSAA---LAMKPALAKSALVLSLQNGVE-NADTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHG  170 (318)
T ss_dssp             -GGHHHHH---HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTT
T ss_pred             -ccHHHHH---HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHH
Confidence             5788888   568888999999998876532 2246666663 10  11111    0         11333444 3445


Q ss_pred             HHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          133 TYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       133 ~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +.+..+|+..+...++-..=.+..|.++++|..+.+++
T Consensus       171 ~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~  208 (318)
T 3hwr_A          171 ANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALS  208 (318)
T ss_dssp             HHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHH
Confidence            67888888888877877777788899998887776553

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.63  E-value=7e-16  Score=121.90  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=94.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+||+++++. ...+.|+....+++++++++|+|++++|....++.++.  .+.
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  245 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DFT  245 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH--HHH
Confidence            589999999999999999999999999999986542 22344776666899999999999999998777777763  346


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.++++.++||++++.+.+.+.+.+.+++.++.
T Consensus       246 l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  279 (347)
T 1mx3_A          246 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  279 (347)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             HhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc
Confidence            6789999999999999999999999999877664

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.62  E-value=4.9e-16  Score=122.05  Aligned_cols=111  Identities=14%  Similarity=0.074  Sum_probs=95.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||+.+|+.+...|++|.+|||++.+.+...+.|+... +++++++++|+|++++|....++.++.  .+.
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  222 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVN--AEL  222 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhC--HHH
Confidence            68999999999999999999999999999999755555555566544 799999999999999997777777773  357


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|+++||++++.+.+.+.+.+.+...++.
T Consensus       223 l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  256 (330)
T 4e5n_A          223 LALVRPGALLVNPCRGSVVDEAAVLAALERGQLG  256 (330)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence            7889999999999999999999999999877665

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.62  E-value=1e-15  Score=119.88  Aligned_cols=111  Identities=9%  Similarity=0.037  Sum_probs=93.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC-ChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI-SDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~-~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|||||+|+||..+|+.+...|++|.+||+ ++++ +...+.|+...++++++++++|+|++++|....++.++.  ++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~--~~  223 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KA  223 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcC--HH
Confidence            5899999999999999999999999999999 8766 344455777666889999999999999997766777763  34


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .++.++++++++|++++.+.+.+.+.+.+++..+.
T Consensus       224 ~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~  258 (320)
T 1gdh_A          224 TIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA  258 (320)
T ss_dssp             HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence            66789999999999998887788899988775543

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.62  E-value=1.3e-15  Score=121.86  Aligned_cols=112  Identities=11%  Similarity=0.015  Sum_probs=95.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++++.+...+.|+....+++++++++|+|++++|....++.++.  .+.
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~  269 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DET  269 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhh--HHH
Confidence            689999999999999999999999999999987665555556777667889999999999999997777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++++++||++++.+.+.+.+.+.+++..+.
T Consensus       270 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  303 (393)
T 2nac_A          270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLA  303 (393)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred             HhhCCCCCEEEECCCchHhhHHHHHHHHHcCCee
Confidence            6789999999999999888888999999875443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.62  E-value=1.1e-15  Score=121.56  Aligned_cols=112  Identities=10%  Similarity=0.068  Sum_probs=96.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|||||+|+||..+|+.+...|++ |.+|||++.+.+...+.|+....+++++++++|+|++++|....++.++.  ++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~  242 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN--KE  242 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBC--HH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhC--HH
Confidence            5899999999999999999999997 99999988666666666777666899999999999999998777777763  34


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .++.++++.++||++++.+.+.+.+.+.++..++.
T Consensus       243 ~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~  277 (364)
T 2j6i_A          243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR  277 (364)
T ss_dssp             HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc
Confidence            66889999999999999888889999999876654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.62  E-value=1.3e-15  Score=120.15  Aligned_cols=110  Identities=12%  Similarity=0.087  Sum_probs=94.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++.+.+...  +.....++++++++||+|++++|..+.++.++.  .+.
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~--~~~  249 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD--HDR  249 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC--HHH
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC--HHH
Confidence            6899999999999999999999999999999875443322  667677899999999999999998777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++...+.+.+.+.|+...+.
T Consensus       250 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  283 (345)
T 4g2n_A          250 IAKIPEGAVVINISRGDLINDDALIEALRSKHLF  283 (345)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCce
Confidence            7889999999999999999999999999876554

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.61  E-value=1.4e-15  Score=119.73  Aligned_cols=107  Identities=17%  Similarity=0.219  Sum_probs=72.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||+.+|+++...|++|.+|||++++     ..+.....++++++++||+|++++|....++.++.  .+.
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~--~~~  244 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVD--ASL  244 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------C--HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhh--HHH
Confidence            68999999999999999999999999999999765     23455667899999999999999997777777773  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++++++||++++.+.+.+.+.+.++...+.
T Consensus       245 l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~  278 (340)
T 4dgs_A          245 LQALGPEGIVVNVARGNVVDEDALIEALKSGTIA  278 (340)
T ss_dssp             HHHTTTTCEEEECSCC--------------CCSS
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence            7889999999999999999999999999765553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.61  E-value=1.5e-14  Score=113.83  Aligned_cols=162  Identities=9%  Similarity=0.129  Sum_probs=113.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------------ecChhhhhcCCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------------SASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~dvii~~v~~   68 (173)
                      +|||+|||+|.||+.++..|.++|++|++|+|+ ++.+.+.+.|...             ++++++ ++++|+||+|+| 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk-   79 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVK-   79 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCC-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCC-
Confidence            379999999999999999999999999999996 6777777766432             345555 588999999999 


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCCCH------------------HHHHHHHHHHhcCCc----ee----eec--
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILP------------------SHMQKLEKTFTGNLT----FY----ILE--  120 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~------------------~~~~~l~~~l~~~g~----~~----v~~--  120 (173)
                      +.++++++   +++.+.+.++++|++..++-+                  ...+.+.+.+....+    .+    ...  
T Consensus        80 ~~~~~~~~---~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg  156 (335)
T 3ghy_A           80 APALESVA---AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG  156 (335)
T ss_dssp             HHHHHHHH---GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred             chhHHHHH---HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence            56788888   568888999999999877621                  122345555543221    11    111  


Q ss_pred             -------eeeeeec----CHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhh
Q 044797          121 -------RMFLISS----SIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       121 -------~~~~~~g----~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                             ..+.++.    ..+..+.+..+|+..|...++-..=.+..|.++..|..+..+
T Consensus       157 ~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l  216 (335)
T 3ghy_A          157 HIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPV  216 (335)
T ss_dssp             EEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHH
T ss_pred             EEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHH
Confidence                   1233432    234556777888888877777666667777777766655443

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.61  E-value=2e-15  Score=117.54  Aligned_cols=109  Identities=15%  Similarity=0.146  Sum_probs=92.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++++ +...+.|+... +++++++++|+|++++|....++.++.  .+.
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li~--~~~  218 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLIN--EER  218 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhcC--HHH
Confidence            58999999999999999999999999999999877 45556677654 788999999999999998777777662  346


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ++.++++.+++|++++.+.+.+.+.+.++...+
T Consensus       219 l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i  251 (307)
T 1wwk_A          219 LKLMKKTAILINTSRGPVVDTNALVKALKEGWI  251 (307)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred             HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence            678999999999999988888889999877554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.61  E-value=3.1e-15  Score=117.66  Aligned_cols=110  Identities=10%  Similarity=0.070  Sum_probs=93.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++ +...+.|+.. .+++++++++|+|++++|....++.++.  .+.
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  241 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLN--DNT  241 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBC--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhC--HHH
Confidence            58999999999999999999999999999998766 3445567654 4788999999999999998777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.++++.++||++++.+.+.+.+.+.+++..+.
T Consensus       242 l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~  275 (335)
T 2g76_A          242 FAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA  275 (335)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             HhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence            7889999999999999888888999999876553

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.61  E-value=1.9e-15  Score=118.98  Aligned_cols=110  Identities=14%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++ +...+.|+.. .+++++++++|+|++++|.+..++.++.  .++
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~--~~~  226 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLIN--EER  226 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhC--HHH
Confidence            68999999999999999999999999999999877 5555557654 4788899999999999997776777763  246


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .+.++++++++|++++.+.+.+.+.+.++...+.
T Consensus       227 ~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~  260 (334)
T 2dbq_A          227 LKLMKKTAILINIARGKVVDTNALVKALKEGWIA  260 (334)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence            6789999999999999888888899988775443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.60  E-value=2e-15  Score=117.89  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=93.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++++. ...+.|+.. .+++++++++|+|++++|....++.++.  ++.
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~--~~~  218 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIID--YPQ  218 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhC--HHH
Confidence            689999999999999999999999999999998764 345567665 4788999999999999997776777663  346


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .+.++++.+++|++++.+.+.+.+.+.+++.++.
T Consensus       219 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  252 (313)
T 2ekl_A          219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY  252 (313)
T ss_dssp             HHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence            6789999999999999888889999999876553

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.59  E-value=1.1e-14  Score=118.23  Aligned_cols=156  Identities=12%  Similarity=0.034  Sum_probs=109.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHcCCce----ecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS------GYKVQAFEISD-PLVDKFFMLGGIR----SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~------g~~V~~~d~~~-~~~~~~~~~g~~~----~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+|||+|+||.++|++|+++      |++|++++++. ...+...+.|+..    ..++.++++++|+|++++|+ ..
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~-~~  133 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISD-AA  133 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCH-HH
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCCh-HH
Confidence            6899999999999999999999      99998776654 4455566678765    36789999999999999995 44


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHH---HHhcCCceeee----------------------ceee-ee
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK---TFTGNLTFYIL----------------------ERMF-LI  125 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~---~l~~~g~~~v~----------------------~~~~-~~  125 (173)
                      ...++   +++.+.+++|+++......   +...+.+   .+ ..++.++.                      .++. ++
T Consensus       134 ~~eVl---~eI~p~LK~GaILs~AaGf---~I~~le~~~i~~-p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~li  206 (525)
T 3fr7_A          134 QADNY---EKIFSHMKPNSILGLSHGF---LLGHLQSAGLDF-PKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  206 (525)
T ss_dssp             HHHHH---HHHHHHSCTTCEEEESSSH---HHHHHHHTTCCC-CTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEE
T ss_pred             HHHHH---HHHHHhcCCCCeEEEeCCC---CHHHHhhhcccC-CCCCcEEEEecCCCchhHHHHHhcccccccCCccEEE
Confidence            55677   4688999999996554432   2333343   22 23343321                      1111 33


Q ss_pred             ecC----HhhHHHHHHHHHhhCCcee-----------------ecCCCchHhHhHHhHhhhHhhhh
Q 044797          126 SSS----IDCFTYLFLVKNEFFIDKK-----------------VNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       126 ~g~----~~~~~~~~~~~~~~g~~~~-----------------~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      +-+    .+..+.+..+++.+|....                 +..+|++|+|+..    +.++|+
T Consensus       207 Av~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA----~~d~lV  268 (525)
T 3fr7_A          207 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEA----LFRRYT  268 (525)
T ss_dssp             EEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHH----HHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHH----HHHHHH
Confidence            322    2568889999999997421                 3789999998876    555554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.59  E-value=1.7e-15  Score=119.03  Aligned_cols=106  Identities=16%  Similarity=0.131  Sum_probs=90.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++++.     .+.....+++++++++|+|++++|....++.++.  .+.
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~--~~~  237 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIIN--REV  237 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBC--HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhh--HHH
Confidence            589999999999999999999999999999998653     2556667889999999999999997667777763  246


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+.++++++++|++++.+.+.+.+.+.+.+..+
T Consensus       238 l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i  270 (333)
T 3ba1_A          238 IDALGPKGVLINIGRGPHVDEPELVSALVEGRL  270 (333)
T ss_dssp             HHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred             HhcCCCCCEEEECCCCchhCHHHHHHHHHcCCC
Confidence            678899999999999988888999999977544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.59  E-value=1.1e-14  Score=108.81  Aligned_cols=118  Identities=16%  Similarity=0.074  Sum_probs=88.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .|||+|||+|.||+++++.|.++|++|++||+.                  ++ ++++|  |+|+|+. .+.+++   .+
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl---~~   60 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV---EK   60 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH---HH
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH---HH
Confidence            379999999999999999999999999999983                  22 56789  9999964 788888   56


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e-----eeeeecCHhhHHHHHHHHHhhCCcee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R-----MFLISSSIDCFTYLFLVKNEFFIDKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~-----~~~~~g~~~~~~~~~~~~~~~g~~~~  147 (173)
                      +.+.++++++++|++...+..   +.+.+...|.+|+.. +     ....+++++..+.++++++.+|...+
T Consensus        61 l~~~l~~g~ivvd~sgs~~~~---vl~~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG~~vv  129 (232)
T 3dfu_A           61 LSAFARRGQMFLHTSLTHGIT---VMDPLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELGGSIV  129 (232)
T ss_dssp             HHTTCCTTCEEEECCSSCCGG---GGHHHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTTCEEC
T ss_pred             HHHhcCCCCEEEEECCcCHHH---HHHHHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhCCEEE
Confidence            778899999999976543322   122233467776642 2     33345577789999999999996443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.58  E-value=5.3e-15  Score=117.35  Aligned_cols=110  Identities=17%  Similarity=0.172  Sum_probs=91.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+||+++. .+...+.|+.. .+++++++++|+|++++|....++.++.  .+.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~~  252 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLG--AEA  252 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCC--HHH
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcC--HHH
Confidence            5899999999999999999999999999999863 34445567664 4799999999999999998777777773  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++.+.+.+.+.+.++...+.
T Consensus       253 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  286 (365)
T 4hy3_A          253 FSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV  286 (365)
T ss_dssp             HHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE
T ss_pred             HhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce
Confidence            7889999999999999999999999999876554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.58  E-value=3.2e-15  Score=116.19  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+++...|++|.+|||+++  +.    +.....+++++++++|+|++++|....++.++.  .+.
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~--~~~  196 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQH  196 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC--HHH
Confidence            6899999999999999999999999999999876  11    344456788999999999999998777777773  357


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ++.+++|++++|++++.+.+.+.+.+.+++..+
T Consensus       197 l~~mk~gailin~srg~~vd~~aL~~aL~~g~i  229 (303)
T 1qp8_A          197 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ  229 (303)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred             HhhCCCCCEEEECCCCcccCHHHHHHHHHhCCc
Confidence            788999999999999988888889999987654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.58  E-value=1.2e-15  Score=119.53  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=91.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++.+.+..  .....++++++++||+|++++|....++.++.  .+.
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~--~~~  213 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLFS--TEL  213 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS--HHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhcC--HHH
Confidence            68999999999999999999999999999998765432211  12345788999999999999998777777773  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|+++||++++.+.+.+.+.+.+.+..+.
T Consensus       214 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  247 (324)
T 3evt_A          214 FQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS  247 (324)
T ss_dssp             HHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCS
T ss_pred             HhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCce
Confidence            7889999999999999999999999999876554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.58  E-value=1.4e-15  Score=119.05  Aligned_cols=109  Identities=12%  Similarity=0.055  Sum_probs=90.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++...+.+.  +.....++++++++||+|++++|....++.++.  .+.
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~  216 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRETHHLFT--ASR  216 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC--TTT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH--HHH
Confidence            6899999999999999999999999999999874332211  112345788999999999999997777777774  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ++.+++|+++||++++.+.+.+.+.+.+++..+
T Consensus       217 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  249 (324)
T 3hg7_A          217 FEHCKPGAILFNVGRGNAINEGDLLTALRTGKL  249 (324)
T ss_dssp             TTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSS
T ss_pred             HhcCCCCcEEEECCCchhhCHHHHHHHHHcCCc
Confidence            788999999999999999999999999987655

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.57  E-value=4.4e-15  Score=116.84  Aligned_cols=108  Identities=13%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++ +...+.|+... +++++++++|+|++++|.+..++.++.  ++.
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~--~~~  222 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIIN--EER  222 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhC--HHH
Confidence            58999999999999999999999999999999876 44445565544 788889999999999997767777773  245


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+.++++ +++|++++.+.+.+.+.+.+++..+
T Consensus       223 ~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i  254 (333)
T 2d0i_A          223 VKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKL  254 (333)
T ss_dssp             HHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCB
T ss_pred             HhhCCCC-EEEECCCCcccCHHHHHHHHHcCCc
Confidence            6789999 9999999888888888888876544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.56  E-value=3.2e-14  Score=111.04  Aligned_cols=139  Identities=12%  Similarity=0.065  Sum_probs=103.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-----------HcC--------------CceecChhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-----------MLG--------------GIRSASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g--------------~~~~~~~~~~~~   57 (173)
                      .||+|||+|.||+.||..++.+|++|++||++++.+++..           +.|              +..++++.++++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~   86 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVE   86 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTT
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhc
Confidence            5899999999999999999999999999999998765421           111              124567788899


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI  125 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~  125 (173)
                      +||+|+.++|.+.++++-++  .++.+.+++++++.+.+++-+.  .++.+.+.+    .|.||++..        +...
T Consensus        87 ~ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~  162 (319)
T 3ado_A           87 GVVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLP--SKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHP  162 (319)
T ss_dssp             TEEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCH--HHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECT
T ss_pred             cCcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccc--hhhhhhccCCCcEEEecCCCCccccchHHhcCCC
Confidence            99999999998888877766  4688889999988766554332  234443332    256776654        2233


Q ss_pred             ecCHhhHHHHHHHHHhhCCc
Q 044797          126 SSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       126 ~g~~~~~~~~~~~~~~~g~~  145 (173)
                      ..++++.+.+..+...+|+.
T Consensus       163 ~Ts~~~~~~~~~~~~~~gk~  182 (319)
T 3ado_A          163 ETSPATVDRTHALMRKIGQS  182 (319)
T ss_dssp             TCCHHHHHHHHHHHHHTTCE
T ss_pred             CCcHHHHHHHHHHHHHhCCc
Confidence            45678899999999999953

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.56  E-value=6.7e-15  Score=116.01  Aligned_cols=108  Identities=17%  Similarity=0.101  Sum_probs=90.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++.   .+.+... .++++++++||+|++++|....++.++.  .+.
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~  222 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIG--EKQ  222 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhh--HHH
Confidence            589999999999999999999999999999997641   1223333 3899999999999999997777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++.+.+.+.+.+.++...+.
T Consensus       223 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  256 (343)
T 2yq5_A          223 LKEMKKSAYLINCARGELVDTGALIKALQDGEIA  256 (343)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCc
Confidence            7889999999999999999999999999876553

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.56  E-value=1.1e-14  Score=114.61  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=91.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++++.  +.+ .+...++++++++++|+|++++|....++.++.  .+.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~~  221 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIN--DES  221 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHh--HHH
Confidence            589999999999999999999999999999998764  222 344455788999999999999998777777763  346


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.++++.++||++++.+.+.+.+.+.++...+.
T Consensus       222 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  255 (333)
T 1j4a_A          222 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  255 (333)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCce
Confidence            6789999999999999988899999999876654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.55  E-value=6.6e-14  Score=110.52  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CC--------------ceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GG--------------IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--------------~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+|.||..++..|.+.|++|++|||++++.+.+.+. +.              ...++++++++++|+||+|+|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            699999999999999999999999999999999998888765 22              245677788889999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN  113 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~  113 (173)
                      .+ ..++++   +++.+.+++++++++..+..+.. .++.+.+.+.
T Consensus        85 ~~-~~~~~~---~~l~~~l~~~~~vv~~~~~~~~~-~~~~~~l~~~  125 (359)
T 1bg6_A           85 AI-HHASIA---ANIASYISEGQLIILNPGATGGA-LEFRKILREN  125 (359)
T ss_dssp             GG-GHHHHH---HHHGGGCCTTCEEEESSCCSSHH-HHHHHHHHHT
T ss_pred             ch-HHHHHH---HHHHHhCCCCCEEEEcCCCchHH-HHHHHHHHhc
Confidence            54 457777   56778899999999885534333 2344444443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.55  E-value=1.7e-15  Score=118.25  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||+.+|+.+...|++|.+|||++++.+.+...  ....+++++++++|+|++++|....++.++.  .+.
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~~  215 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIIN--SEL  215 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBS--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhcc--HHH
Confidence            689999999999999999999999999999987643211111  1124688999999999999997777777773  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|+++||++++...+.+.+.+.++...+.
T Consensus       216 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  249 (315)
T 3pp8_A          216 LDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK  249 (315)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc
Confidence            7889999999999999999999999999876554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.55  E-value=5.6e-14  Score=113.87  Aligned_cols=161  Identities=16%  Similarity=0.184  Sum_probs=109.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------C-CceecChhhhhcCCCE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------G-GIRSASPMDAGKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~dv   61 (173)
                      |.+|+|||+|++|.++|..|++.|++|+++|.++++++.+.+-                   | ...+++..++++++|+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~  100 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA  100 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence            4689999999999999999999999999999999998876431                   1 3356778888999999


Q ss_pred             EEEeccChh---------hhhhhhcCccchhhcCC---CCCEEEEcCCCCHHHHHHHHHHH-hcC--Cceee--------
Q 044797           62 LVVVISHVD---------QIDDIFFGHEGVLKGLQ---KGAVIILQSTILPSHMQKLEKTF-TGN--LTFYI--------  118 (173)
Q Consensus        62 ii~~v~~~~---------~~~~v~~~~~~i~~~l~---~g~~ii~~st~~~~~~~~l~~~l-~~~--g~~~v--------  118 (173)
                      +|+|||.|.         .++.+.   +.+.++++   ++++|+..||+.|.+++++...+ .+.  +..+.        
T Consensus       101 ~~I~VpTP~~~d~~~Dl~~v~~a~---~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl  177 (444)
T 3vtf_A          101 TFIAVGTPPAPDGSADLRYVEAAA---RAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFL  177 (444)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCC
T ss_pred             eEEEecCCCCCCCCCCcHHHHHHH---HHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccc
Confidence            999998653         123333   34556664   57899999999999998765543 332  23221        


Q ss_pred             ece----------eeeeec-CHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhH
Q 044797          119 LER----------MFLISS-SIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFI  166 (173)
Q Consensus       119 ~~~----------~~~~~g-~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~  166 (173)
                      ..+          ...+|+ ++.+.+.+..+.+.+.....+...-++ =+.+++.|.|.
T Consensus       178 ~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~~~~~A-E~~Kl~eN~~r  235 (444)
T 3vtf_A          178 REGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVMKPREA-ELVKYASNVFL  235 (444)
T ss_dssp             CTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEECHHHH-HHHHHHHHHHH
T ss_pred             cCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEechhHH-HHHHHHHHHHH
Confidence            111          223444 556777788887776654433222222 33455555553

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.53  E-value=1.2e-14  Score=116.89  Aligned_cols=108  Identities=11%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|+||+.+|+++...|++|.+|||++...    ..++....++++++++||+|++++|....++.++.  .+.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  219 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AKE  219 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhh--HHH
Confidence            689999999999999999999999999999976531    11355666899999999999999998777887773  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++.+.+.+.+.+.++...+.
T Consensus       220 l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~  253 (404)
T 1sc6_A          220 ISLMKPGSLLINASRGTVVDIPALADALASKHLA  253 (404)
T ss_dssp             HHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             HhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence            7889999999999999998889999999875543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.53  E-value=2.2e-14  Score=119.16  Aligned_cols=109  Identities=18%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|++|...|++|++||++++. +...+.|+... ++++++++||+|++|+|....++.++.  +++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~--~~~  218 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLID--KEA  218 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhC--HHH
Confidence            68999999999999999999999999999998753 44555677665 788999999999999997767777773  236


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+.++++++++|++++.+.+...+.+.+.+..+
T Consensus       219 ~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i  251 (529)
T 1ygy_A          219 LAKTKPGVIIVNAARGGLVDEAALADAITGGHV  251 (529)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred             HhCCCCCCEEEECCCCchhhHHHHHHHHHcCCc
Confidence            778999999999999998888889898876533

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.53  E-value=1.4e-14  Score=115.37  Aligned_cols=107  Identities=11%  Similarity=0.084  Sum_probs=89.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh----hhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ----IDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~----~~~v~~~   78 (173)
                      ++|||||+|+||..+|+.+...|++|.+||++.+..    + ......++++++++||+|++++|....    ++.++. 
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~----~-~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~-  193 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR----G-DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD-  193 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT----T-CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh----c-cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-
Confidence            689999999999999999999999999999854332    1 223456899999999999999997766    677763 


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                       .+.++.+++|+++||++++.+.+.+.+.+.++..++.
T Consensus       194 -~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~  230 (381)
T 3oet_A          194 -ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPL  230 (381)
T ss_dssp             -HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCE
T ss_pred             -HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCe
Confidence             3567889999999999999999999999999876654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=113.17  Aligned_cols=109  Identities=15%  Similarity=0.208  Sum_probs=89.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CC-eEEEEcCChHHHHHHHHc-C--CceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GY-KVQAFEISDPLVDKFFML-G--GIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~-~V~~~d~~~~~~~~~~~~-g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++|+|||+|.||..++++|.+. |+ +|.+|||++++.+++.+. +  +..+++++++++++|+|++|+|.   .+.++.
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v~~  212 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPILF  212 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCCBC
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcccC
Confidence            6899999999999999999876 76 899999999999888765 5  67778899999999999999984   234442


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                         +  +.+++|++|+++++..|.. +++.+.+.+++..|++.
T Consensus       213 ---~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~  249 (312)
T 2i99_A          213 ---G--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDS  249 (312)
T ss_dssp             ---G--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESC
T ss_pred             ---H--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECC
Confidence               1  5688999999998888865 66666676778888874

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.52  E-value=5.9e-14  Score=109.21  Aligned_cols=162  Identities=15%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecC----------hhhhhcCCCEEEEeccChh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSAS----------PMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~----------~~~~~~~~dvii~~v~~~~   70 (173)
                      |+|||+|||+|.||+.++..|. +|++|++|+|++++.+.+.+.|.....+          ..+..+.+|+||+|+| +.
T Consensus         1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK-~~   78 (307)
T 3ego_A            1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVK-QH   78 (307)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCC-GG
T ss_pred             CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeC-HH
Confidence            8899999999999999999999 9999999999999888888777544311          1245678999999999 67


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eeee-----c--------eeeeeecC---Hh
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYIL-----E--------RMFLISSS---ID  130 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v~-----~--------~~~~~~g~---~~  130 (173)
                      ++++++   +.+.+ +.+++ |++..++-.. .+.+.+.+....+    .+..     .        ..+.+|.-   .+
T Consensus        79 ~~~~~l---~~l~~-~~~~~-ivs~~nGi~~-~e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~  152 (307)
T 3ego_A           79 QLQSVF---SSLER-IGKTN-ILFLQNGMGH-IHDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEP  152 (307)
T ss_dssp             GHHHHH---HHTTS-SCCCE-EEECCSSSHH-HHHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCG
T ss_pred             HHHHHH---HHhhc-CCCCe-EEEecCCccH-HHHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcH
Confidence            788887   34544 35555 8887776432 2344444332211    1110     0        12223321   11


Q ss_pred             hHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797          131 CFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT  170 (173)
Q Consensus       131 ~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~  170 (173)
                      ..+.+...|+.-|...++-..=.+..|.++.+|..+..++
T Consensus       153 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~lt  192 (307)
T 3ego_A          153 DRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLT  192 (307)
T ss_dssp             GGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHH
Confidence            2222223333334455555556677888888887666543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.51  E-value=1.9e-14  Score=112.21  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|+||..+|+.+...|++|.+|||++++.+      + ...+++++++++|+|++++|....++.++.  .+.
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~~  215 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLN--RER  215 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcC--HHH
Confidence            5899999999999999999999999999999876543      2 245788999999999999997767777762  246


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .+.++++.+++|++++.+.+.+.+.+.++ ..+
T Consensus       216 l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i  247 (311)
T 2cuk_A          216 LFAMKRGAILLNTARGALVDTEALVEALR-GHL  247 (311)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS
T ss_pred             HhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC
Confidence            67899999999999988888888999987 544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.51  E-value=2e-14  Score=115.65  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|.||..+|+.+...|++|.+||+++...    ..+.....++++++++||+|++++|...+++.++.  .+.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~--~~~  230 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLIT--EAK  230 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcC--HHH
Confidence            589999999999999999999999999999975421    12345567899999999999999998777777773  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++.+.+.+.+.+.++...+.
T Consensus       231 l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~  264 (416)
T 3k5p_A          231 LRKMKKGAFLINNARGSDVDLEALAKVLQEGHLA  264 (416)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCcc
Confidence            7889999999999999999999999999876553

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.51  E-value=2.8e-14  Score=112.20  Aligned_cols=108  Identities=16%  Similarity=0.052  Sum_probs=90.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|++|||++++.  + +..+. ..+++++++++|+|++++|....++.++.  .+.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~--~~~  219 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA  219 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhC--HHH
Confidence            589999999999999999999999999999987643  1 12233 34788999999999999998777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++|+++++.+.+.+.+.+.++..++.
T Consensus       220 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          220 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA  253 (333)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCcc
Confidence            7889999999999999998999999999876654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.49  E-value=3.5e-14  Score=111.63  Aligned_cols=108  Identities=12%  Similarity=0.051  Sum_probs=90.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.||..+|+.+...|++|.+|||++++.  + +..+. ..+++++++++|+|++++|....++.++.  .+.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~--~~~  220 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVT--RDF  220 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBC--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhC--HHH
Confidence            589999999999999999999999999999987653  1 22233 34788999999999999998777777763  346


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++||++++.+.+.+.+.+.++..++.
T Consensus       221 l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~  254 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQLVDTEAVIEAVESGKLG  254 (331)
T ss_dssp             HHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhCCCCcEEEECCCcccccHHHHHHHHHhCCce
Confidence            7789999999999999988899999999876654

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.49  E-value=5e-14  Score=112.26  Aligned_cols=107  Identities=16%  Similarity=0.125  Sum_probs=89.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh----hhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ----IDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~----~~~v~~~   78 (173)
                      ++|||||+|+||+.+|+.+...|++|.+||++++..    +.+.. ..++++++++||+|++++|....    ++.++. 
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~-  190 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD-  190 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC-
Confidence            689999999999999999999999999999876542    23432 45788999999999999997766    667663 


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                       .+.++.+++|+++||++++.+.+.+.+.+.+++..+.
T Consensus       191 -~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~  227 (380)
T 2o4c_A          191 -EPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADL  227 (380)
T ss_dssp             -HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCE
T ss_pred             -HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence             3577889999999999999888889999999876544

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.46  E-value=2.6e-14  Score=110.51  Aligned_cols=158  Identities=13%  Similarity=0.083  Sum_probs=103.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC---ceecChhhhh-cCCCEEEEeccChhhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG---IRSASPMDAG-KDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~---~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~   76 (173)
                      |+|||+|||+|.||+.++..|.++|++|++|+|+++.++.....|.   ....+..+.+ +.+|+||+|+| +.++++++
T Consensus         1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk-~~~~~~~l   79 (294)
T 3g17_A            1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVK-THQLDAVI   79 (294)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSC-GGGHHHHG
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCC-ccCHHHHH
Confidence            8899999999999999999999999999999999765432222232   1222344544 78999999999 67788888


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeee----ce-------eeeeecCHhhHHHHHHHHHh
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYIL----ER-------MFLISSSIDCFTYLFLVKNE  141 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~----~~-------~~~~~g~~~~~~~~~~~~~~  141 (173)
                         +.+.+.+.++++|++..++-.....     +...    ++.+..    .+       ..+..++.+..+.+..+|+.
T Consensus        80 ---~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~~~~~~~~~l~~~l~~  151 (294)
T 3g17_A           80 ---PHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQDNALTRQFRDLVQD  151 (294)
T ss_dssp             ---GGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEETTEEEEEEEEEEEEECSHHHHHHHHHTTT
T ss_pred             ---HHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcCCCEEEECCCEEecCccHHHHHHHHHHHh
Confidence               5677888888889888765322111     3222    211111    11       11111334445666677766


Q ss_pred             hCCceeecCCCchHhHhHHhHhhhHh
Q 044797          142 FFIDKKVNISGQEIHWGYLKINYFIR  167 (173)
Q Consensus       142 ~g~~~~~g~~Gsg~a~~~~~~~~~~~  167 (173)
                      -|...++-..=.+..|.+++.|..+.
T Consensus       152 ~~~~~~~~~di~~~~w~Kl~~N~~in  177 (294)
T 3g17_A          152 SQIDIVLEANIQQAIWYKLLVNLGIN  177 (294)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEChHHHHHHHHHHHHHHHHH
Confidence            67666776666777888888887554

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.46  E-value=2.8e-13  Score=108.93  Aligned_cols=91  Identities=15%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHH-CCCeEEEEc---CChHHHHHH-HHcC---------C----------ceecChhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIR-SGYKVQAFE---ISDPLVDKF-FMLG---------G----------IRSASPMDAG   56 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~-~g~~V~~~d---~~~~~~~~~-~~~g---------~----------~~~~~~~~~~   56 (173)
                      |+|||+|||+|.||+.+|..|.+ .|++|++|+   |++++.+.+ .+.+         .          ..++++++++
T Consensus         1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   80 (404)
T 3c7a_A            1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI   80 (404)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence            77899999999999999999988 599999999   888888774 3322         1          1445677888


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEc
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQ   95 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~   95 (173)
                      +++|+||+|+|. ...++++   +++.+.++++++|++.
T Consensus        81 ~~aD~Vilav~~-~~~~~v~---~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           81 SGADVVILTVPA-FAHEGYF---QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TTCSEEEECSCG-GGHHHHH---HHHTTTCCTTCEEEET
T ss_pred             CCCCEEEEeCch-HHHHHHH---HHHHhhCCCCcEEEEc
Confidence            899999999994 5677777   5688888899999985

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.43  E-value=2.4e-13  Score=104.22  Aligned_cols=114  Identities=18%  Similarity=0.075  Sum_probs=85.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhh--hhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQ--IDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~--~~~v~~~~   79 (173)
                      ++|+|||+|.||.++++.|.+.|++|++|||++++.+.+.+. ++...++..++++++|+||.|+|.+..  +...+   
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i---  206 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIF---  206 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSS---
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCC---
Confidence            589999999999999999999999999999999998877654 655555778888999999999996532  11222   


Q ss_pred             cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeee
Q 044797           80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLI  125 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~  125 (173)
                      +  .+.++++++++|+++ ..   .++.+..++.|.++++.-.+++
T Consensus       207 ~--~~~l~~g~~viDv~~-~~---t~ll~~a~~~g~~~v~g~~mlv  246 (275)
T 2hk9_A          207 N--YDLIKKDHVVVDIIY-KE---TKLLKKAKEKGAKLLDGLPMLL  246 (275)
T ss_dssp             C--GGGCCTTSEEEESSS-SC---CHHHHHHHHTTCEEECSHHHHH
T ss_pred             C--HHHcCCCCEEEEcCC-Ch---HHHHHHHHHCcCEEECCHHHHH
Confidence            0  245789999999987 22   2344555567888776544333

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.43  E-value=2.4e-12  Score=100.83  Aligned_cols=135  Identities=10%  Similarity=0.043  Sum_probs=98.5

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v   75 (173)
                      |++||||||+|.||..+++.+.+. ++++. ++|+++++.+.+.+. ++. .++.+++++  ++|+|++|+|+..+.+.+
T Consensus         2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   80 (331)
T 4hkt_A            2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI   80 (331)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence            778999999999999999999885 67775 799999998887654 777 888999987  799999999976665444


Q ss_pred             hcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCce
Q 044797           76 FFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFIDK  146 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~~  146 (173)
                      .       ..+..|+.++..  .+.++...+++.+..++.|+.+......-.  . ..+..++.+++.  +|.+.
T Consensus        81 ~-------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~--~-p~~~~~~~~i~~g~iG~i~  145 (331)
T 4hkt_A           81 E-------RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRF--D-PHFMAVRKAIDDGRIGEVE  145 (331)
T ss_dssp             H-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGG--C-HHHHHHHHHHHTTTTCSEE
T ss_pred             H-------HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccC--C-HHHHHHHHHHHcCCCCceE
Confidence            3       334567766653  356788889999999888876544332211  1 234566666654  67653

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.42  E-value=7e-13  Score=100.94  Aligned_cols=110  Identities=9%  Similarity=-0.057  Sum_probs=84.2

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhh--hhhhhcCcc
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQ--IDDIFFGHE   80 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~--~~~v~~~~~   80 (173)
                      +|+|||+|.||.++++.|.+.|++|++|||++++.+.+.+. +.. ..+..++ +++|+|++|+|.+..  +...+   .
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l---~  192 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPL---P  192 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSS---C
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCC---C
Confidence            79999999999999999999999999999999988777653 554 4567787 899999999996532  11222   1


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM  122 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~  122 (173)
                        .+.++++++++|++.. |... ++.+.+++.|.++++...
T Consensus       193 --~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~g~~  230 (263)
T 2d5c_A          193 --AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQTGLP  230 (263)
T ss_dssp             --GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEECSHH
T ss_pred             --HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEECcHH
Confidence              3567889999999876 4333 466777778888775533

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.40  E-value=4.9e-13  Score=92.45  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .+|+|||+    |+||..++++|.+.|++|+.+|++.+.+     .|.....+++++.+.+|++++++| +..+.+++  
T Consensus        15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~--   86 (138)
T 1y81_A           15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA--   86 (138)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH--
T ss_pred             CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH--
Confidence            58999999    9999999999999999977777664322     477778889999889999999999 67777887  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeee
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFL  124 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~  124 (173)
                       +++.+ ...+.++++.++.    .+++.+.++++|+++++..+++
T Consensus        87 -~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpnc~g  126 (138)
T 1y81_A           87 -KEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGRCIM  126 (138)
T ss_dssp             -HHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECSCCHH
T ss_pred             -HHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCCcce
Confidence             34444 4456677777664    4677888888899998765443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.34  E-value=6e-12  Score=99.13  Aligned_cols=112  Identities=11%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhhhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQIDD   74 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~   74 (173)
                      |++||||||+|.||..+++.|.+. +.++. ++|+++++.+.+.+. ++ ...++.+++++  ++|+|++|+|+..+.+.
T Consensus         1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   80 (344)
T 3ezy_A            1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSEL   80 (344)
T ss_dssp             -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHH
Confidence            888999999999999999999875 56765 799999998877654 65 47788999987  79999999997655544


Q ss_pred             hhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +.       ..+..|+.++..  .+.++...+++.+..++.|+.+..
T Consensus        81 ~~-------~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v  120 (344)
T 3ezy_A           81 VI-------ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFT  120 (344)
T ss_dssp             HH-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HH-------HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence            43       345567766543  356788889999988888876543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.34  E-value=6e-12  Score=97.51  Aligned_cols=109  Identities=16%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce--ecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR--SASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++|+|||+|.||..+++.+...|++|++|||++++.+.+.+.|...  ..+.+++++++|+|++++|.. .+.      +
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~-~i~------~  230 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSM-ILN------Q  230 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSC-CBC------H
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChh-hhC------H
Confidence            6899999999999999999999999999999998877766667653  246778889999999999952 111      1


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      +..+.++++.+++|++.....+ . + +.....|+.++..+
T Consensus       231 ~~~~~mk~g~~lin~a~g~~~~-~-~-~~a~~~G~~~i~~p  268 (300)
T 2rir_A          231 TVLSSMTPKTLILDLASRPGGT-D-F-KYAEKQGIKALLAP  268 (300)
T ss_dssp             HHHTTSCTTCEEEECSSTTCSB-C-H-HHHHHHTCEEEECC
T ss_pred             HHHHhCCCCCEEEEEeCCCCCc-C-H-HHHHHCCCEEEECC
Confidence            2446789999999998753332 1 2 33445677765443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.34  E-value=1.7e-12  Score=97.33  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=76.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeE-EEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKV-QAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||||||+|.||..+++.|.+.|+++ .+||+++ +.+.       ..+++++++ .++|+|++|+|+..+ .+.+    
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~-~~~~----   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAV-KDYA----   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHH-HHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHH-HHHH----
Confidence            48999999999999999999999997 6999985 2211       567888888 689999999995543 3333    


Q ss_pred             chhhcCCCCCEEEEcCCCCHHH---HHHHHHHHhcCCcee
Q 044797           81 GVLKGLQKGAVIILQSTILPSH---MQKLEKTFTGNLTFY  117 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~---~~~l~~~l~~~g~~~  117 (173)
                        ...+++|+.+++.++..+..   .+++.+..+++|..+
T Consensus        68 --~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~  105 (236)
T 2dc1_A           68 --EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRV  105 (236)
T ss_dssp             --HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCE
T ss_pred             --HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeE
Confidence              24567899999998765432   277888877777774

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.33  E-value=2.1e-11  Score=104.63  Aligned_cols=139  Identities=17%  Similarity=0.092  Sum_probs=101.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH---------------c-------CCceecChhhhhcCCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM---------------L-------GGIRSASPMDAGKDVS   60 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~---------------~-------g~~~~~~~~~~~~~~d   60 (173)
                      .||+|||+|.||+.||..++.+|++|+++|++++.+++..+               .       .+..+++. +.+++||
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD  395 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  395 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCC
Confidence            68999999999999999999999999999999987654221               0       01233444 4478999


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeeecC
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLISSS  128 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~g~  128 (173)
                      +||.+++.+.++++-++  .++.+.+++++++.+.++.-+.  .++.+.+..    .|.||+...        +.....+
T Consensus       396 lVIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSsl~i--~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts  471 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNV--DDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSS  471 (742)
T ss_dssp             EEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH--HHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             EEEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCcCCh--HHHHhhcCCccccccccccCCCCCCceEEEecCCCCC
Confidence            99999998888887666  4688889999988766544332  234444322    266776543        3333456


Q ss_pred             HhhHHHHHHHHHhhCCce
Q 044797          129 IDCFTYLFLVKNEFFIDK  146 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~~~  146 (173)
                      +++.+.+..+.+.+|+..
T Consensus       472 ~e~~~~~~~~~~~lgK~p  489 (742)
T 3zwc_A          472 PTTIATVMSLSKKIGKIG  489 (742)
T ss_dssp             HHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            788999999999999753

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=99.33  E-value=1.5e-12  Score=103.05  Aligned_cols=112  Identities=17%  Similarity=0.136  Sum_probs=86.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-C-CCeEEEEcCChHHHHHHHHc-----CC--ceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-S-GYKVQAFEISDPLVDKFFML-----GG--IRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~-g~~V~~~d~~~~~~~~~~~~-----g~--~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      ++|+|||+|.||..+++.|.. . ..+|.+|||++++.+++.+.     |+  ..+++.+++++++|+|++|+|.+. ..
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-~~  208 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-YA  208 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-EE
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-CC
Confidence            589999999999999998864 3 46899999999999888764     53  456788899999999999999652 23


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .++.     .+.+++|++++++++..|. .+++...+..++..|++..
T Consensus       209 pvl~-----~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~~  250 (350)
T 1x7d_A          209 TIIT-----PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEYE  250 (350)
T ss_dssp             EEEC-----GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESSH
T ss_pred             ceec-----HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECCH
Confidence            3441     2568899999999998876 4555555555666777653

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.32  E-value=1.2e-11  Score=95.87  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             CCeEEEEeCChhhHH-HHHHHHH-CCCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            2 ASKVGFVGLDEYSVD-MAASLIR-SGYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-ia~~l~~-~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++||||||+|.||.. +++.|.+ .+.++. ++|+++++.+.+.+. |+...++.+++++++|+|++|+|+..+.+.+. 
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~-   84 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIK-   84 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHH-
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHH-
Confidence            369999999999996 8888876 467776 899999999887664 77668889999999999999999766654443 


Q ss_pred             CccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           78 GHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                            ..++.|+.++..  .+.++...+++.+..+++|+.+.
T Consensus        85 ------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~  121 (308)
T 3uuw_A           85 ------ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM  121 (308)
T ss_dssp             ------HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred             ------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence                  345567766653  55678888899998888877643

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.32  E-value=9e-12  Score=97.31  Aligned_cols=135  Identities=8%  Similarity=-0.072  Sum_probs=90.3

Q ss_pred             CCCeEEEEeCChhhH-HHHHHHHHC-CCeEEEEcCChHHHHHHHHc-CCce-ecChhhhh-cCCCEEEEeccChhhhhhh
Q 044797            1 MASKVGFVGLDEYSV-DMAASLIRS-GYKVQAFEISDPLVDKFFML-GGIR-SASPMDAG-KDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         1 m~~~IgiiG~G~mG~-~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~~~-~~~~~~~~-~~~dvii~~v~~~~~~~~v   75 (173)
                      |++||||||+|.||. .+++.|.+. +.++.++|+++++.+.+.+. |+.. ..+..+.+ .++|+|++|+|+..+.+.+
T Consensus         1 m~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~   80 (323)
T 1xea_A            1 MSLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLA   80 (323)
T ss_dssp             -CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHH
Confidence            788999999999998 599998775 67777999999998877654 6553 44445555 6899999999965554333


Q ss_pred             hcCccchhhcCCCCCEE-EEc-CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCc
Q 044797           76 FFGHEGVLKGLQKGAVI-ILQ-STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFID  145 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~i-i~~-st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~  145 (173)
                      .       +.++.|+.+ +.- .+.++...+++.+..++.|+.+......-.  . ..+..++.+++.  +|.+
T Consensus        81 ~-------~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~--~-p~~~~~~~~i~~g~iG~i  144 (323)
T 1xea_A           81 A-------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRH--I-PLYNQHLSELAQQECGAL  144 (323)
T ss_dssp             H-------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGC--C-HHHHHHCHHHHHTSCTTC
T ss_pred             H-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeecccc--C-HHHHHHHHHHhcCCcCCc
Confidence            2       334567644 443 456778888999988888876544321111  1 234455555543  5654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.32  E-value=2.1e-11  Score=80.94  Aligned_cols=103  Identities=16%  Similarity=0.041  Sum_probs=74.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCcee-------cChhhhhcCCCEEEEeccChhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGIRS-------ASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      |+++|.|+|+|.||..+++.|.+.| ++|++++|++++.+.+...++...       .+..++++++|+||.++|. ...
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~-~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF-FLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG-GGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc-hhh
Confidence            5679999999999999999999999 999999999999888775554321       2334567789999999973 333


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT  111 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~  111 (173)
                      ..+.      ....+.|..+++.++ ++...+++.+..+
T Consensus        83 ~~~~------~~~~~~g~~~~~~~~-~~~~~~~~~~~~~  114 (118)
T 3ic5_A           83 PIIA------KAAKAAGAHYFDLTE-DVAATNAVRALVE  114 (118)
T ss_dssp             HHHH------HHHHHTTCEEECCCS-CHHHHHHHHHHHH
T ss_pred             HHHH------HHHHHhCCCEEEecC-cHHHHHHHHHHHH
Confidence            3333      123456777888765 4556666666544

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.31  E-value=1.9e-11  Score=96.23  Aligned_cols=134  Identities=10%  Similarity=0.064  Sum_probs=96.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~   77 (173)
                      +||||||+|.||..+++.|.+. ++++. ++|+++++.+.+.+. |+...++.+++++  ++|+|++|+|+..+.+.+. 
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-   83 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLIT-   83 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHH-
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHH-
Confidence            6899999999999999999886 67765 899999998887664 7778889999988  8999999999766654443 


Q ss_pred             CccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCce
Q 044797           78 GHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFIDK  146 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~~  146 (173)
                            ..+..|+.++..  .+.++...+++.+..++.|+.+......-.  . ..+..++.+++.  +|.+.
T Consensus        84 ------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~--~-p~~~~~k~~i~~g~iG~i~  147 (344)
T 3euw_A           84 ------RAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRF--D-PSFAAINARVANQEIGNLE  147 (344)
T ss_dssp             ------HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGG--C-HHHHHHHHHHHTTTTSSEE
T ss_pred             ------HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhc--C-HHHHHHHHHHhcCCCCceE
Confidence                  234556655543  356778888999998888876543321111  1 234555555543  66543

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.31  E-value=1.3e-11  Score=97.29  Aligned_cols=110  Identities=10%  Similarity=0.108  Sum_probs=86.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHH-H-CCCeEE-EEcCChHHHHHHHHc-C--CceecChhhhhcC--CCEEEEeccChhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLI-R-SGYKVQ-AFEISDPLVDKFFML-G--GIRSASPMDAGKD--VSALVVVISHVDQI   72 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~-~-~g~~V~-~~d~~~~~~~~~~~~-g--~~~~~~~~~~~~~--~dvii~~v~~~~~~   72 (173)
                      |++||||||+|.||..+++.+. + .++++. ++|+++++.+.+.+. |  ....++.++++++  +|+|++|+|+..+.
T Consensus         1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHH
Confidence            7889999999999999999998 4 467765 899999998887654 6  5778899999875  89999999976665


Q ss_pred             hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCcee
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~  117 (173)
                      +.+.       ..++.|+.++..  .+.++...+++.+..+++|+.+
T Consensus        81 ~~~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (344)
T 3mz0_A           81 SSVL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL  120 (344)
T ss_dssp             HHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred             HHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence            4443       345677766654  3567788888998888877765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.31  E-value=1e-11  Score=95.96  Aligned_cols=106  Identities=14%  Similarity=0.146  Sum_probs=79.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++|+|||+|.||..+++.+...|++|++|||++++.+.+.+.|+...  .+.+++++++|+|++++|.. .+.      +
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~-~i~------~  228 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-VVT------A  228 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSC-CBC------H
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChH-HhC------H
Confidence            58999999999999999999999999999999988776666676543  46778889999999999852 111      1


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +..+.++++.+++|++......  .+ +.....|+.++
T Consensus       229 ~~l~~mk~~~~lin~ar~~~~~--~~-~~a~~~Gv~~~  263 (293)
T 3d4o_A          229 NVLAEMPSHTFVIDLASKPGGT--DF-RYAEKRGIKAL  263 (293)
T ss_dssp             HHHHHSCTTCEEEECSSTTCSB--CH-HHHHHHTCEEE
T ss_pred             HHHHhcCCCCEEEEecCCCCCC--CH-HHHHHCCCEEE
Confidence            2345789999999998743322  12 33344566654

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.31  E-value=7.4e-12  Score=98.40  Aligned_cols=109  Identities=12%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|++|..+|+.+...|.+|.+||+.+..  ...+.++. ..+.++++++||+|++++|....++.++.  .+.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~--~~~  216 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMIN--EER  216 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcC--HHH
Confidence            58999999999999999999999999999987543  23344544 45799999999999999998777877773  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus       217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~  250 (334)
T 3kb6_A          217 ISLMKDGVYLINTARGKVVDTDALYRAYQRGKFS  250 (334)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEE
T ss_pred             HhhcCCCeEEEecCccccccHHHHHHHHHhCCce
Confidence            7889999999999999888889999999865543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.30  E-value=1.4e-11  Score=97.30  Aligned_cols=134  Identities=13%  Similarity=0.142  Sum_probs=96.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHc-CCceecChhhhh--cCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAG--KDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~--~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +||||||+|.||..+++.+.+. ++++ .++|+++++.+.+.+. |+...++.++++  .++|+|++|+|+..+.+.+. 
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-   84 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIE-   84 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHH-
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHH-
Confidence            5899999999999999999886 6775 4889999998887654 777788999998  56999999999776655443 


Q ss_pred             CccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           78 GHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                            ..+..|+.++..  .+.++...+++.+..+++|+.+......-.  . ..+..++.+++  .+|.+.
T Consensus        85 ------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~--~-p~~~~~k~~i~~g~iG~i~  148 (354)
T 3db2_A           85 ------QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRR--L-GALRKMKEMIDTKEIGEVS  148 (354)
T ss_dssp             ------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGG--S-HHHHHHHHHHHTTTTCCEE
T ss_pred             ------HHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhc--C-HHHHHHHHHHhcCCCCCeE
Confidence                  345567766543  356778888999988888876543321111  1 23455555554  466543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.29  E-value=7e-12  Score=86.91  Aligned_cols=87  Identities=17%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCc--eecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGI--RSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      ++|+|||+|.||..+++.|...|++|++|||++++.+.+.+. +..  ..++..++++++|+||.|+|.+..   ++   
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~---   95 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IV---   95 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SB---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---Ee---
Confidence            689999999999999999999999999999999998876553 543  456778888999999999996532   22   


Q ss_pred             cchhhcCCCCCEEEEcCC
Q 044797           80 EGVLKGLQKGAVIILQST   97 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st   97 (173)
                        -.+.++++.+++|.+.
T Consensus        96 --~~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           96 --EERSLMPGKLFIDLGN  111 (144)
T ss_dssp             --CGGGCCTTCEEEECCS
T ss_pred             --eHHHcCCCCEEEEccC
Confidence              1245778999999864

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.29  E-value=2.9e-11  Score=94.79  Aligned_cols=134  Identities=10%  Similarity=-0.002  Sum_probs=96.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      +||||||+|.||..+++.|.+. +.++. ++|+++++.+.+.+. ++ ....+.+++++  ++|+|++|+|+..+.+.+.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   85 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAK   85 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHH
Confidence            5899999999999999999885 56765 889999998887654 66 46788999987  7999999999766654443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                             ..+..|+.++..  .+.++...+++.+..++.|+.+......-.  . ..+..++.+++  .+|.+.
T Consensus        86 -------~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~--~-p~~~~~k~~i~~g~iG~i~  149 (330)
T 3e9m_A           86 -------LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVF--L-PITQKVKATIQEGGLGEIL  149 (330)
T ss_dssp             -------HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGG--C-HHHHHHHHHHHTTTTCSEE
T ss_pred             -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhh--C-HHHHHHHHHHhCCCCCCeE
Confidence                   334556655443  356778889999998888876544332211  1 24556666665  577643

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=99.29  E-value=3.4e-12  Score=88.93  Aligned_cols=108  Identities=15%  Similarity=0.139  Sum_probs=83.1

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCCh--HHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISD--PLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~--~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      .+|+|||+    |+||..++++|.+.|++|+.+|++.  +.+     .|.....++.++.+.+|++++++| +..+.+++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~   87 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRN-SEAAWGVA   87 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSC-STHHHHHH
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHH
Confidence            57999999    8999999999999999977777765  322     377777788898889999999999 46777777


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeee
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFL  124 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~  124 (173)
                         +++.+ ...+.++++.++.    .+++.+.++++|++++...++.
T Consensus        88 ---~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igpnc~g  127 (145)
T 2duw_A           88 ---QEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVMDRCPA  127 (145)
T ss_dssp             ---HHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEECSCCHH
T ss_pred             ---HHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEcCCeee
Confidence               34444 3445677776554    4678888889999998665443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.29  E-value=1.1e-11  Score=96.49  Aligned_cols=133  Identities=7%  Similarity=0.029  Sum_probs=93.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~   78 (173)
                      +||+|||+|.||..+++.|.+. ++++ .++|+++++.+.+.+. +...++.+++++  ++|+|++|+|+..+.+.+.  
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~--   87 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL--   87 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH--
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH--
Confidence            6899999999999999999886 5665 5999999987766554 566778888885  7999999999655543332  


Q ss_pred             ccchhhcCCCCCEEE-E-cCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhhCCce
Q 044797           79 HEGVLKGLQKGAVII-L-QSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDK  146 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii-~-~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~g~~~  146 (173)
                           +.++.|+.++ . -.+.++...+++.+..++.|+.+........  .+ .+..++.+++.+|.+.
T Consensus        88 -----~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~--~p-~~~~~~~~i~~lG~i~  149 (315)
T 3c1a_A           88 -----AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLF--NP-AWEALKADLTSIGPIL  149 (315)
T ss_dssp             -----HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGG--CH-HHHHHHHTHHHHCSEE
T ss_pred             -----HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhc--CH-HHHHHHHHHHHcCCeE
Confidence                 3456677554 4 2456788888899988888876543322211  12 3445555555788653

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.28  E-value=2.7e-11  Score=95.74  Aligned_cols=134  Identities=10%  Similarity=0.006  Sum_probs=96.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      +||||||+|.||..+++.+.+.  ++++. ++|+++++.+.+.+. |+...++.+++++  ++|+|++|+|+..+.+.+.
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   93 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQSI   93 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            5899999999999999999987  67754 899999998887654 8888889999986  7999999999766554443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                             ..+..|+.++..  .+.++...+++.+..++.|+.+......-.  .+ .+..++.+++  .+|.+.
T Consensus        94 -------~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~--~p-~~~~~k~~i~~g~iG~i~  157 (354)
T 3q2i_A           94 -------ECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRR--NA-TLQLLKRAMQEKRFGRIY  157 (354)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGG--SH-HHHHHHHHHHTTTTCSEE
T ss_pred             -------HHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccC--CH-HHHHHHHHHhcCCCCceE
Confidence                   345567777654  345777888888888887776543321111  12 3455566654  466543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.28  E-value=3.5e-11  Score=94.38  Aligned_cols=136  Identities=15%  Similarity=0.042  Sum_probs=96.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC---Ce-EEEEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG---YK-VQAFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQI   72 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~-V~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~   72 (173)
                      |++||||||+|.||..+++.+.+..   ++ +.++|+++++.+.+.+. ++ ...++.+++++  +.|+|++|+|+..+.
T Consensus         1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   80 (334)
T 3ohs_X            1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHK   80 (334)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            8889999999999999999998754   34 45889999998887664 66 46788999987  699999999976665


Q ss_pred             hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHH--HhhCCce
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVK--NEFFIDK  146 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~--~~~g~~~  146 (173)
                      +.+.       ..+..|+.++..  .+.+....+++.+..+++|+.+......-.  . ..+..++.++  ..+|.+.
T Consensus        81 ~~~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~--~-p~~~~~k~~i~~g~iG~i~  148 (334)
T 3ohs_X           81 AAVM-------LCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRF--F-PASEALRSVLAQGTLGDLR  148 (334)
T ss_dssp             HHHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGG--S-HHHHHHHHHHHHTTTCSEE
T ss_pred             HHHH-------HHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhc--C-HHHHHHHHHHhcCCCCCeE
Confidence            4443       345667776654  356778888999988888876543321111  1 2345555555  3466543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.27  E-value=7.7e-11  Score=93.10  Aligned_cols=134  Identities=16%  Similarity=0.057  Sum_probs=97.7

Q ss_pred             CeEEEEeCChhhH-HHHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSV-DMAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~-~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      +||||||+|.||. .++..|.+. ++++. ++|+++++.+.+.+. |+....+.+++++  +.|+|++|+|+..+.+.+.
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~  107 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWID  107 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHH
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            5899999999998 789999887 67765 889999998887664 8887889999986  5899999999766654443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                             ..+..|+.++..  .+.++...+++.+..++.|+.+......-.   ...+..++.+++  .+|.+.
T Consensus       108 -------~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~---~p~~~~~k~~i~~G~iG~i~  171 (350)
T 3rc1_A          108 -------RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLH---HPQHRQVADMLDEGVIGEIR  171 (350)
T ss_dssp             -------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGG---CTHHHHHHHHHHTTTTCSEE
T ss_pred             -------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccC---CHHHHHHHHHHhcCCCCCeE
Confidence                   345567766543  356788889999998888886543322111   124556666665  667654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.24  E-value=9.5e-11  Score=91.45  Aligned_cols=132  Identities=14%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----H------c--CCceecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----M------L--GGIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~------~--g~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      +||+|||+|.||++++..|+..|+ +|++||+++++++...    .      .  .+..+++. ++++++|+||++++.+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~p   83 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASIP   83 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence            689999999999999999999998 9999999988776521    1      1  12334566 7789999999999321


Q ss_pred             ---------------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHH
Q 044797           70 ---------------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTY  134 (173)
Q Consensus        70 ---------------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~  134 (173)
                                     ...++++   +.+.++. ++.+++..++........+.+... .    -..+++.++...+....
T Consensus        84 ~~~g~~r~d~~~~~~~i~~~i~---~~i~~~~-~~~iii~~sNp~~~~~~~~~~~~~-~----~~~rviG~~t~ld~~r~  154 (317)
T 2ewd_A           84 GRPKDDRSELLFGNARILDSVA---EGVKKYC-PNAFVICITNPLDVMVSHFQKVSG-L----PHNKVCGMAGVLDSSRF  154 (317)
T ss_dssp             SCCSSCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECCSSHHHHHHHHHHHHC-C----CGGGEEESCHHHHHHHH
T ss_pred             CCCCCcHHHHHHhhHHHHHHHH---HHHHHHC-CCcEEEEeCChHHHHHHHHHHhhC-C----CHHHEEeccCcHHHHHH
Confidence                           1234444   3455554 578888776532222233444321 1    12334455556666666


Q ss_pred             HHHHHHhhCC
Q 044797          135 LFLVKNEFFI  144 (173)
Q Consensus       135 ~~~~~~~~g~  144 (173)
                      ...+.+.+|.
T Consensus       155 ~~~la~~lg~  164 (317)
T 2ewd_A          155 RTFIAQHFGV  164 (317)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHhCc
Confidence            7777778875

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.24  E-value=1.4e-10  Score=90.66  Aligned_cols=134  Identities=9%  Similarity=0.032  Sum_probs=93.5

Q ss_pred             CeEEEEeCChhhHHH-HHHHHHCCCeEE-EEcCChHHHHHHHHc-CCc-eecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDM-AASLIRSGYKVQ-AFEISDPLVDKFFML-GGI-RSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~i-a~~l~~~g~~V~-~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      +||+|||+|.||..+ +..|.+.++++. ++|+++++.+.+.+. |+. ..++.+++++  ++|+|++++|+..+.+.+.
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   80 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL   80 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence            489999999999998 888877778765 899999998876654 654 6778888886  5999999999655543332


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                             ..++.|+.++..  .+.++...+++.+..+++|+.+.......  ..+ .+..++.+++  .+|.+.
T Consensus        81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r--~~p-~~~~~~~~i~~g~iG~i~  144 (332)
T 2glx_A           81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLR--NAA-AHRAMRDAIAEGRIGRPI  144 (332)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGG--GSH-HHHHHHHHHHTTTTSSEE
T ss_pred             -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhh--cCH-HHHHHHHHHHcCCCCCeE
Confidence                   345668766544  35677888889988888887654432211  112 3455556654  566543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.22  E-value=2.4e-10  Score=88.88  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=55.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc----------CCce-ecChhhhhcCCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML----------GGIR-SASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~----------g~~~-~~~~~~~~~~~dvii~~v~~   68 (173)
                      ||||+|||+|.||++++..|.++|  ++|++||+++++++.+...          .... ..++ +.++++|+||+++|.
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            369999999999999999999999  7999999999887665421          1333 4555 778899999999997


Q ss_pred             hh
Q 044797           69 VD   70 (173)
Q Consensus        69 ~~   70 (173)
                      +.
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            55

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.22  E-value=7.4e-11  Score=93.51  Aligned_cols=109  Identities=11%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .||||||+|.||...++.+.+. +.++. ++|+++++.+.+.+.|+...++.+++++  +.|+|++|+|+..+.+.+.  
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~--   83 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI--   83 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH--
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH--
Confidence            4799999999999999999876 56764 7899999987666668888889999987  7899999999766654443  


Q ss_pred             ccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           79 HEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                           ..++.|+.++..  .+.++...+++.+..++.|+.+.
T Consensus        84 -----~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~  120 (359)
T 3e18_A           84 -----SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM  120 (359)
T ss_dssp             -----HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             -----HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence                 345677777654  35677888899998888777543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.22  E-value=2e-11  Score=99.70  Aligned_cols=103  Identities=15%  Similarity=0.023  Sum_probs=82.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|+|||+|.||..+|+.+...|++|++||+++.+.......|+.. .+++++++++|+|++++..    +.++.  .+.
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t----~~lI~--~~~  330 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGN----VDVIK--LEH  330 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSS----SSSBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCCh----hhhcC--HHH
Confidence            6899999999999999999999999999999998765555567654 5789999999999999632    23331  235


Q ss_pred             hhcCCCCCEEEEcCCCCH-HHHHHHHH--HHhc
Q 044797           83 LKGLQKGAVIILQSTILP-SHMQKLEK--TFTG  112 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~-~~~~~l~~--~l~~  112 (173)
                      ++.+++|.+++|++++.. .+.+.+.+  .+..
T Consensus       331 l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~  363 (479)
T 1v8b_A          331 LLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHI  363 (479)
T ss_dssp             HTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEE
T ss_pred             HhhcCCCcEEEEeCCCCccccchhhhcccccee
Confidence            577999999999999988 47778877  5543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=99.21  E-value=3.9e-10  Score=76.93  Aligned_cols=106  Identities=12%  Similarity=0.013  Sum_probs=72.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCcee-c---Chh----hhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRS-A---SPM----DAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~-~---~~~----~~~~~~dvii~~v~~~~~~~   73 (173)
                      |+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +.... .   +..    ..++++|+|++++|++....
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~   84 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL   84 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHHH
Confidence            689999999999999999999999999999999988877653 55321 1   222    12568999999999654322


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      .+.    ...+.+.++.+++..+.  +...    +.+++.|+.++
T Consensus        85 ~~~----~~~~~~~~~~ii~~~~~--~~~~----~~l~~~g~~~v  119 (140)
T 1lss_A           85 MSS----LLAKSYGINKTIARISE--IEYK----DVFERLGVDVV  119 (140)
T ss_dssp             HHH----HHHHHTTCCCEEEECSS--TTHH----HHHHHTTCSEE
T ss_pred             HHH----HHHHHcCCCEEEEEecC--HhHH----HHHHHcCCCEE
Confidence            222    24445666777765543  2222    34445666544

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.19  E-value=1.1e-10  Score=92.38  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHH-H-CCCeEE-EEcCChHHHHHHHHc-C--CceecChhhhhc--CCCEEEEeccChhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLI-R-SGYKVQ-AFEISDPLVDKFFML-G--GIRSASPMDAGK--DVSALVVVISHVDQID   73 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~-~-~g~~V~-~~d~~~~~~~~~~~~-g--~~~~~~~~~~~~--~~dvii~~v~~~~~~~   73 (173)
                      ++||||||+|.||..+++.+. + .++++. ++|+++++.+.+.+. |  .....+++++++  +.|+|++|+|+..+.+
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~  102 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHAD  102 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            359999999999999999998 4 367765 899999998877654 6  677889999987  5899999999766654


Q ss_pred             hhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCcee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~  117 (173)
                      .+.       ..++.|+.++..  .+.++...+++.+..++.|+.+
T Consensus       103 ~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  141 (357)
T 3ec7_A          103 VAV-------AALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM  141 (357)
T ss_dssp             HHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred             HHH-------HHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence            443       345567766643  3567788888999888888754

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.18  E-value=2.9e-10  Score=89.36  Aligned_cols=134  Identities=11%  Similarity=0.104  Sum_probs=93.0

Q ss_pred             CeEEEEeCChhhHHHHHHHH-H-CCCeE-EEEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLI-R-SGYKV-QAFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~-~g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~v   75 (173)
                      +||+|||+|.||..+++.+. + .++++ .++|+++++.+.+.+. |+ ...++.+++++  ++|+|++|+|+..+.+.+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   88 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMT   88 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHH
Confidence            68999999999999999998 5 46775 5899999998877664 66 56788889886  699999999966554444


Q ss_pred             hcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcC-CceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           76 FFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGN-LTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~-g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                      .       ..++.|+.++..  .+.++...+++.+..++. ++.+......  -..+ .+..++.+++  .+|.+.
T Consensus        89 ~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~--r~~p-~~~~~~~~i~~g~iG~i~  154 (346)
T 3cea_A           89 I-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMR--RYDD-SYRYAKKIVDNGDIGKII  154 (346)
T ss_dssp             H-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGG--GTCH-HHHHHHHHHHTTTTCSEE
T ss_pred             H-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEeccc--ccCH-HHHHHHHHHHcCCCCCeE
Confidence            3       345567766543  345677788888888888 8765433211  1112 2445555554  456543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.17  E-value=1.8e-10  Score=89.66  Aligned_cols=110  Identities=15%  Similarity=0.098  Sum_probs=82.6

Q ss_pred             CeEEEEeCChhhHH-HHHHHHH-CCCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVD-MAASLIR-SGYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~-~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      +||||||+|.||.. +++.+.+ .++++. ++|+++++.+.+.+. |+...++.+++..++|+|++|+|+..+.+.+.  
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~--   83 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   83 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH--
Confidence            58999999999996 8888876 467765 999999988876654 76666777776578999999999766554443  


Q ss_pred             ccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeee
Q 044797           79 HEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                           ..++.|+.++..  .+.++...+++.+..++.|+.+..
T Consensus        84 -----~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           84 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             -----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence                 345567755433  456788888999988888876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.17  E-value=2.8e-10  Score=81.74  Aligned_cols=108  Identities=11%  Similarity=0.070  Sum_probs=75.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCcee----cC---hhhh--hcCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIRS----AS---PMDA--GKDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~----~~---~~~~--~~~~dvii~~v~~~~~~   72 (173)
                      ++|.|+|+|.||..+++.|.+. |++|+++|+++++.+.+.+.|....    .+   +.++  ++++|+||+++|++...
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~  119 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGN  119 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHH
Confidence            5899999999999999999999 9999999999999998887776532    12   2233  56899999999976655


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      ..++    .....+.+...++..+. .+...+    .+.+.|+.++.
T Consensus       120 ~~~~----~~~~~~~~~~~ii~~~~-~~~~~~----~l~~~G~~~vi  157 (183)
T 3c85_A          120 QTAL----EQLQRRNYKGQIAAIAE-YPDQLE----GLLESGVDAAF  157 (183)
T ss_dssp             HHHH----HHHHHTTCCSEEEEEES-SHHHHH----HHHHHTCSEEE
T ss_pred             HHHH----HHHHHHCCCCEEEEEEC-CHHHHH----HHHHcCCCEEE
Confidence            4444    13334444555554432 444433    34445666553

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.17  E-value=1.8e-11  Score=100.36  Aligned_cols=102  Identities=14%  Similarity=0.072  Sum_probs=80.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|+|||+|.||..+|+.+...|.+|++||+++.+.......|... .+++++++.+|+|++++..    +.++.  .+.
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t----~~lI~--~~~  350 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGN----YHVIN--HDH  350 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSS----SCSBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCc----ccccC--HHH
Confidence            5899999999999999999999999999999998754444556654 4789999999999999842    23332  245


Q ss_pred             hhcCCCCCEEEEcCCCCHH-HHHHHHHHHhc
Q 044797           83 LKGLQKGAVIILQSTILPS-HMQKLEKTFTG  112 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~-~~~~l~~~l~~  112 (173)
                      ++.+++|.+++|++++... +.+.+ +.++.
T Consensus       351 l~~MK~gAilINvgrg~veID~~aL-~AL~~  380 (494)
T 3d64_A          351 MKAMRHNAIVCNIGHFDSEIDVAST-RQYQW  380 (494)
T ss_dssp             HHHCCTTEEEEECSSSSCSBCCGGG-TTSEE
T ss_pred             HhhCCCCcEEEEcCCCcchhchHHH-Hhhhc
Confidence            6789999999999998774 55666 55543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=99.16  E-value=7.9e-10  Score=76.17  Aligned_cols=109  Identities=14%  Similarity=0.076  Sum_probs=74.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec----Chh---h-hhcCCCEEEEeccChhhh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA----SPM---D-AGKDVSALVVVISHVDQI   72 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~----~~~---~-~~~~~dvii~~v~~~~~~   72 (173)
                      |..+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.|.....    +.+   + -++++|++++++|++...
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n   85 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEA   85 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHH
Confidence            45689999999999999999999999999999999999998887765321    111   1 146899999999976544


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ..++.    ....+.++..++.... .+...    +.+.+.|+.++
T Consensus        86 ~~~~~----~a~~~~~~~~iiar~~-~~~~~----~~l~~~G~d~v  122 (140)
T 3fwz_A           86 GEIVA----SARAKNPDIEIIARAH-YDDEV----AYITERGANQV  122 (140)
T ss_dssp             HHHHH----HHHHHCSSSEEEEEES-SHHHH----HHHHHTTCSEE
T ss_pred             HHHHH----HHHHHCCCCeEEEEEC-CHHHH----HHHHHCCCCEE
Confidence            43431    2223334444444332 34333    44555677544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=99.15  E-value=7.1e-11  Score=92.42  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=80.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-C-CCeEEEEcCChHHHHHHHHc------CCceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-S-GYKVQAFEISDPLVDKFFML------GGIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~-g~~V~~~d~~~~~~~~~~~~------g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      ++++|||+|.||..+++.|.+ . ..+|.+|||++++.+++.+.      .+. +++.++++ ++|+|++|+|...   .
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~---p  200 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK---P  200 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---C
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---c
Confidence            589999999999999999987 3 46899999999999887653      234 67888889 9999999999642   3


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      ++.     .+.+++|+++++.++..|. .+++...+-..+..|++.
T Consensus       201 v~~-----~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~  240 (322)
T 1omo_A          201 VVK-----AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDD  240 (322)
T ss_dssp             CBC-----GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESC
T ss_pred             eec-----HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECC
Confidence            331     2468899999999887776 444444443445566663

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=99.15  E-value=4.7e-11  Score=92.43  Aligned_cols=113  Identities=9%  Similarity=-0.007  Sum_probs=83.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CC---cee--cChhhhhcCCCEEEEeccChhh--hh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GG---IRS--ASPMDAGKDVSALVVVISHVDQ--ID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~---~~~--~~~~~~~~~~dvii~~v~~~~~--~~   73 (173)
                      +++.|+|+|.||.+++..|.+.|. +|+++||++++.+.+.+. +.   ...  ++..+.++++|+||.|+|.+..  .+
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~  221 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVE  221 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCC
Confidence            589999999999999999999997 999999999998887654 32   222  2445667889999999996532  11


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ....    -...++++.+++|++.. |..+. +.+..++.|..+++.-
T Consensus       222 ~~~i----~~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~Gl  263 (297)
T 2egg_A          222 VQPL----SLERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQNGV  263 (297)
T ss_dssp             CCSS----CCTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEECSH
T ss_pred             CCCC----CHHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEECCH
Confidence            1111    02357789999999884 55543 6677778898877653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.14  E-value=6.6e-10  Score=86.80  Aligned_cols=132  Identities=13%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHH---c------CCce-ecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFM---L------GGIR-SASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~-~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      |||+|||+|.||++++..|...|+  +|+++|+++++++.+..   .      .... ..+ .+.++++|+||+++|.+.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            589999999999999999999999  99999999988766432   1      1122 233 466789999999998543


Q ss_pred             h---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797           71 Q---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYL  135 (173)
Q Consensus        71 ~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~  135 (173)
                      .               +++++   +.+.+.. ++..++..++ ......++.....  +  +-..+++.++...+.....
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~ii~~tN-p~~~~~~~~~~~~--~--~~~~rviG~~t~ld~~r~~  150 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIA---RNVSKYA-PDSIVIVVTN-PVDVLTYFFLKES--G--MDPRKVFGSGTVLDTARLR  150 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECSS-SHHHHHHHHHHHH--T--CCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEeCC-cHHHHHHHHHHHh--C--CChhhEEeeCccHHHHHHH
Confidence            1               23444   3455554 5666666544 3333333333322  1  1112334444444444444


Q ss_pred             HHHHHhhCC
Q 044797          136 FLVKNEFFI  144 (173)
Q Consensus       136 ~~~~~~~g~  144 (173)
                      ..+.+.+|.
T Consensus       151 ~~la~~lgv  159 (319)
T 1a5z_A          151 TLIAQHCGF  159 (319)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhCc
Confidence            455555653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.14  E-value=3.3e-10  Score=91.30  Aligned_cols=100  Identities=15%  Similarity=0.085  Sum_probs=78.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|+|+|+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++.+|+|+++....    .++.  .+.
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~----~iI~--~e~  284 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGND----DIIT--SEH  284 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCS----CSBC--TTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCc----CccC--HHH
Confidence            6899999999999999999999999999999998776666667654 47999999999999865432    2331  245


Q ss_pred             hhcCCCCCEEEEcCCCCHH-HHHHHHHH
Q 044797           83 LKGLQKGAVIILQSTILPS-HMQKLEKT  109 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~-~~~~l~~~  109 (173)
                      ++.+++|.++++++...++ +...+.+.
T Consensus       285 l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          285 FPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             GGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             HhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            6789999999999987653 34455543

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.14  E-value=7.3e-11  Score=92.99  Aligned_cols=136  Identities=12%  Similarity=0.055  Sum_probs=92.0

Q ss_pred             CCCeEEEEeCChhhHH-HHHHH-HH-CCCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcC--CCEEEEeccChhhhh
Q 044797            1 MASKVGFVGLDEYSVD-MAASL-IR-SGYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKD--VSALVVVISHVDQID   73 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~-ia~~l-~~-~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~--~dvii~~v~~~~~~~   73 (173)
                      |++||||||+|.||.. .+..+ .. .++++. ++|+++++.+...+. ++...+++++++++  .|+|++|+|+..+.+
T Consensus         1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (345)
T 3f4l_A            1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   80 (345)
T ss_dssp             -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred             CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            7889999999999996 44424 32 356775 899998876444443 67778899999875  899999999766654


Q ss_pred             hhhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                      .+.       ..++.|+.++..-  +.++...+++.+..+++|+.+......-  .. ..+..++.+++  .+|.+.
T Consensus        81 ~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r--~~-p~~~~~~~~i~~g~iG~i~  147 (345)
T 3f4l_A           81 YAK-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRR--FD-SCFLTAKKAIESGKLGEIV  147 (345)
T ss_dssp             HHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGG--GC-HHHHHHHHHHHHSTTCSEE
T ss_pred             HHH-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechh--cC-HHHHHHHHHHhcCCCCCeE
Confidence            443       4566788888764  5577888889998888887654322111  11 23445555554  466543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.14  E-value=3.2e-10  Score=88.74  Aligned_cols=135  Identities=11%  Similarity=-0.005  Sum_probs=94.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeE-EEEcCChHHHHHHHHc-CCc-eecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKV-QAFEISDPLVDKFFML-GGI-RSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V-~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      +||||||+|.||..+++.+.+.+ .++ .++|+++++.+.+.+. ++. ...+.+++++  ++|+|++|+|+..+.+.+.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   85 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAK   85 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            58999999999999999988754 555 4889999988776654 654 6788999987  7999999999766554443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCcee
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDKK  147 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~  147 (173)
                             ..++.|+.++..  .+.++...+++.+..++.|+.+......-.   ...+..++.+++  .+|.+..
T Consensus        86 -------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~---~p~~~~~~~~i~~g~iG~i~~  150 (329)
T 3evn_A           86 -------AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVF---IPMTQVIKKLLASGEIGEVIS  150 (329)
T ss_dssp             -------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCS---SHHHHHHHHHHHTTTTCSEEE
T ss_pred             -------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccC---CHHHHHHHHHHhCCCCCCeEE
Confidence                   345667766643  356778888999988888876543321111   124566666665  5776543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.12  E-value=1.8e-10  Score=91.66  Aligned_cols=93  Identities=13%  Similarity=0.179  Sum_probs=73.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-------------------------Chhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-------------------------SPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-------------------------~~~~~~~   57 (173)
                      .||+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.|.+...                         ++.++++
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~  264 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT  264 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence            589999999999999999999999999999999999888877765322                         3457889


Q ss_pred             CCCEEEEeccChh-hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           58 DVSALVVVISHVD-QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        58 ~~dvii~~v~~~~-~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++|+||.++..|. ....++.  ++..+.+++|.+|+|++.
T Consensus       265 ~aDIVI~tv~iPg~~ap~Lvt--~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          265 KFDIVITTALVPGRPAPRLVT--AAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             TCSEEEECCCCTTSCCCCCBC--HHHHHTSCTTCEEEETTG
T ss_pred             cCCEEEECCCCCCcccceeec--HHHHhcCCCCcEEEEEeC
Confidence            9999999873222 1222231  356788999999999973

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.2e-10  Score=93.02  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--------eEEEEcCChHH-----HHHHHHc--------------CCceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--------KVQAFEISDPL-----VDKFFML--------------GGIRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--------~V~~~d~~~~~-----~~~~~~~--------------g~~~~~~~~~~   55 (173)
                      .||+|||.|.||+++|..|.++|+        +|.+|.|+++.     .+.+...              .+..++++.++
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a  114 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS  114 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence            389999999999999999998764        59999987652     3333321              13467788999


Q ss_pred             hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ++++|+||+++| .+.+++++   +++.++++++..+++++-+
T Consensus       115 l~~ad~ii~avP-s~~~r~~l---~~l~~~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          115 VKDVDIIVFNIP-HQFLPRIC---SQLKGHVDSHVRAISCLKG  153 (391)
T ss_dssp             HTTCSEEEECSC-GGGHHHHH---HHHTTTSCTTCEEEECCCS
T ss_pred             HhcCCEEEEECC-hhhhHHHH---HHhccccCCCceeEEeccc
Confidence            999999999999 67889998   5788889999999988754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.11  E-value=2.1e-10  Score=91.88  Aligned_cols=93  Identities=14%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-----------------------------cChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-----------------------------ASPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----------------------------~~~~   53 (173)
                      .||+|+|+|.+|..+++.+...|.+|++||+++++.+.+.+.|....                             .++.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~  270 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA  270 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence            58999999999999999999999999999999999888887765421                             1456


Q ss_pred             hhhcCCCEEEEeccChh-hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           54 DAGKDVSALVVVISHVD-QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        54 ~~~~~~dvii~~v~~~~-~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++++++|+||.++..|. ....++ . ++..+.+++|.+|+|++.
T Consensus       271 e~l~~aDVVI~tvlipg~~ap~Lv-t-~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          271 EHIAKQDIVITTALIPGRPAPRLV-T-REMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHTCSEEEECCCCSSSCCCCCB-C-HHHHTTSCTTCEEEETTG
T ss_pred             HHhcCCCEEEECCcCCCCCCCEEe-c-HHHHhcCCCCCEEEEEeC
Confidence            77889999999863222 122222 2 456788999999999973

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.11  E-value=2.3e-10  Score=90.68  Aligned_cols=109  Identities=12%  Similarity=0.080  Sum_probs=83.5

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeEE-EEcCChHHHHHHHHc--CCceecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKVQ-AFEISDPLVDKFFML--GGIRSASPMDAGK--DVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~--g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v   75 (173)
                      +||||||+|.||.. +++.|.+. +.++. ++|+++++.+.+.+.  +....++++++++  +.|+|++|+|+..+.+.+
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   85 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMG   85 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            58999999999995 88888875 56765 899999998887765  4667889999987  459999999966655444


Q ss_pred             hcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           76 FFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      .       ..++.|+.++..  .+.+....+++.+..++.|+.+.
T Consensus        86 ~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~  123 (359)
T 3m2t_A           86 L-------LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSG  123 (359)
T ss_dssp             H-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             H-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            3       345677777654  34577788888888888777543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.10  E-value=1.2e-09  Score=86.47  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=84.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHc-C----CceecChhhhhc--CCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFML-G----GIRSASPMDAGK--DVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~--~~dvii~~v~~~~~~~   73 (173)
                      +||||||+|.||..+++.|.+. ++++ .++|+++++.+.+.+. |    .....+.+++++  ++|+|++|+|+..+.+
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            6899999999999999999875 4665 5899999988776654 5    356778888886  5999999999655543


Q ss_pred             hhhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      .+.       ..++.|+.++..-  +.+....+++.+..++.|+.+..
T Consensus        87 ~~~-------~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~  127 (362)
T 1ydw_A           87 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMD  127 (362)
T ss_dssp             HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHH-------HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            332       4567788776553  56777888999988888886654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.08  E-value=6.8e-10  Score=87.04  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=96.1

Q ss_pred             CCeEEEEeCChhhH-HHHHHHHHCCCeE-EEEcCChHHHHHHHHc--CCceecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797            2 ASKVGFVGLDEYSV-DMAASLIRSGYKV-QAFEISDPLVDKFFML--GGIRSASPMDAGK--DVSALVVVISHVDQIDDI   75 (173)
Q Consensus         2 ~~~IgiiG~G~mG~-~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v   75 (173)
                      ++||||||+|.+|. .++..+...++++ .++|+++++.+.+.+.  +....++.+++++  +.|+|++|+|+..+.+.+
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   83 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA   83 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH
Confidence            36999999999996 6778887778886 6899999988877664  5677788999886  689999999976665544


Q ss_pred             hcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCcee
Q 044797           76 FFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDKK  147 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~  147 (173)
                      .       ..++.|+.++..  .+.++...+++.+..++.|+.+......-.  .+..+..++.+++  .+|.+.+
T Consensus        84 ~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~--~p~~~~~~~~~i~~g~iG~i~~  150 (336)
T 2p2s_A           84 L-------RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERI--NVDSALFAGELVQRGEIGRVIQ  150 (336)
T ss_dssp             H-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTT--TCHHHHHHHHHHHTTTTSSEEE
T ss_pred             H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc--CcHHHHHHHHHHhCCCCCceEE
Confidence            3       345678866544  456778888899888887775442221111  1222556666665  5666543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.08  E-value=6.8e-10  Score=88.75  Aligned_cols=135  Identities=15%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             CCCeEEEEeCC-hhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhh
Q 044797            1 MASKVGFVGLD-EYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDD   74 (173)
Q Consensus         1 m~~~IgiiG~G-~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~   74 (173)
                      |++||||||+| .||..++..+.+. +.++ .++|+++++.+.+.+. |+....+.+++++  +.|+|++++|+..+.+.
T Consensus         1 ~~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~   80 (387)
T 3moi_A            1 MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEH   80 (387)
T ss_dssp             CCEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHH
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHH
Confidence            67899999999 9999999999875 4565 4889999998776654 8888889999987  49999999997666544


Q ss_pred             hhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCc
Q 044797           75 IFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFID  145 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~  145 (173)
                      +.       ..+..|+.++..  .+.+....+++.+..+++|+.+......-  .. ..+..++.+++.  +|.+
T Consensus        81 ~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R--~~-p~~~~~k~~i~~g~iG~i  145 (387)
T 3moi_A           81 VV-------QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRS--HD-PVVRTLRAIVQEGSVGRV  145 (387)
T ss_dssp             HH-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGG--GS-HHHHHHHHHHHHCTTCCE
T ss_pred             HH-------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccc--cC-HHHHHHHHHHhcCCCCCe
Confidence            43       345667777654  24567788889988888887654322111  11 234455566543  6654

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=99.06  E-value=5.6e-09  Score=78.46  Aligned_cols=96  Identities=9%  Similarity=0.045  Sum_probs=68.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |+||+|+|+|+||+.+++.+.+.+.++. ++|++++.     ..|+...++++++. ++|++|-++. |..+...+    
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~~~----   71 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFPLL----   71 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHHHH----
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHHHH----
Confidence            5899999999999999999998877765 58988763     35778888888888 9999986655 44444443    


Q ss_pred             chhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhc
Q 044797           81 GVLKGLQKGAVIILQSTILP-SHMQKLEKTFTG  112 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~  112 (173)
                         + ++.|..++..+|+.. +..+++.+..++
T Consensus        72 ---~-l~~g~~vVigTTG~s~e~~~~l~~aa~~  100 (243)
T 3qy9_A           72 ---D-EDFHLPLVVATTGEKEKLLNKLDELSQN  100 (243)
T ss_dssp             ---T-SCCCCCEEECCCSSHHHHHHHHHHHTTT
T ss_pred             ---H-HhcCCceEeCCCCCCHHHHHHHHHHHhc
Confidence               2 667777776666543 344556555443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=99.06  E-value=4e-09  Score=72.42  Aligned_cols=69  Identities=19%  Similarity=0.091  Sum_probs=55.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cChhhh----hcCCCEEEEeccChh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASPMDA----GKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~   70 (173)
                      +++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+....    .+.+.+    ++++|+|++++++..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            358999999999999999999999999999999999998887765421    122211    457999999999654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.05  E-value=1.2e-09  Score=89.80  Aligned_cols=91  Identities=19%  Similarity=0.101  Sum_probs=75.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|+|+|+|.+|..+++.+...|++|+++|+++.+.+...+.|+.. .+.+++++++|+|+.+++.+..+.      .+.
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~------~~~  347 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIM------LEH  347 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBC------HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHH------HHH
Confidence            5899999999999999999999999999999999988777788764 467888899999999987543222      134


Q ss_pred             hhcCCCCCEEEEcCCCCH
Q 044797           83 LKGLQKGAVIILQSTILP  100 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~  100 (173)
                      .+.++++.++++.+....
T Consensus       348 l~~mk~ggilvnvG~~~~  365 (494)
T 3ce6_A          348 IKAMKDHAILGNIGHFDN  365 (494)
T ss_dssp             HHHSCTTCEEEECSSSGG
T ss_pred             HHhcCCCcEEEEeCCCCC
Confidence            567899999999988654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.04  E-value=1.3e-09  Score=85.70  Aligned_cols=135  Identities=8%  Similarity=0.020  Sum_probs=92.2

Q ss_pred             CCeEEEEeCChhhHH-HHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhhhhh
Q 044797            2 ASKVGFVGLDEYSVD-MAASLIRS-GYKVQ-AFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQIDD   74 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~   74 (173)
                      |+||||||+|.||.. ++..+.+. +.+|. ++|+++++.+++.+. |+ ...++.+++++  +.|+|++|+|+..+.+.
T Consensus        23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~  102 (350)
T 4had_A           23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEW  102 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHH
T ss_pred             ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHH
Confidence            469999999999975 56667665 56765 789999999887664 76 46788999885  58999999997766554


Q ss_pred             hhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           75 IFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                      +.       +.++.|+.|+..-  +.+....+++.+..++.|+.+......-.  . ..+..++.+++  .+|.+.
T Consensus       103 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~--~-p~~~~~k~~i~~G~iG~i~  168 (350)
T 4had_A          103 SI-------KAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITY--S-PVWQKVRSLIDEGAIGSLR  168 (350)
T ss_dssp             HH-------HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGG--S-HHHHHHHHHHHTTTTSSEE
T ss_pred             HH-------HHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeec--C-HHHHHhhHhhhcCCCCcce
Confidence            43       3456788777652  34567778888888877775433321111  1 23445555554  466543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.04  E-value=8.1e-09  Score=80.27  Aligned_cols=132  Identities=12%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHH---c-------C--CceecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFM---L-------G--GIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      |||+|||+|.||++++..|...  |++|++||+++++++....   .       .  +..+.+.++ ++++|+||+++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            5999999999999999999885  7999999999987765421   1       1  223456655 8999999999975


Q ss_pred             hhh---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHH
Q 044797           69 VDQ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFT  133 (173)
Q Consensus        69 ~~~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~  133 (173)
                      |..               ++++.   +.+.++. ++..++..++ .+.....+.....  +  +-..+++.+++.-+...
T Consensus        80 p~~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~viv~tN-P~~~~~~~~~~~~--~--~~~~rviG~gt~ld~~r  150 (310)
T 1guz_A           80 PRKPGMTREDLLMKNAGIVKEVT---DNIMKHS-KNPIIIVVSN-PLDIMTHVAWVRS--G--LPKERVIGMAGVLDAAR  150 (310)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHH---HHHHHHC-SSCEEEECCS-SHHHHHHHHHHHH--C--SCGGGEEEECHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCcEEEEEcC-chHHHHHHHHHhc--C--CChHHEEECCCchHHHH
Confidence            421               12222   2344554 5566665543 4444444433322  1  12234555555544444


Q ss_pred             HHHHHHHhhCC
Q 044797          134 YLFLVKNEFFI  144 (173)
Q Consensus       134 ~~~~~~~~~g~  144 (173)
                      ....+.+.+|.
T Consensus       151 ~~~~la~~l~v  161 (310)
T 1guz_A          151 FRSFIAMELGV  161 (310)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhCC
Confidence            44445555553

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.03  E-value=9.4e-10  Score=86.77  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=89.9

Q ss_pred             CCCeEEEEeCChhhH-HHHHHHHHC-CCeE-EEEcCChHHHHHHHH----cCCceecChhhhhcC--CCEEEEeccChhh
Q 044797            1 MASKVGFVGLDEYSV-DMAASLIRS-GYKV-QAFEISDPLVDKFFM----LGGIRSASPMDAGKD--VSALVVVISHVDQ   71 (173)
Q Consensus         1 m~~~IgiiG~G~mG~-~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~--~dvii~~v~~~~~   71 (173)
                      |++||||||+|.||. ..+..+.+. ++++ .++|++  +.+++.+    .++....+.++++++  .|+|++|+|+..+
T Consensus         1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A            1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH   78 (349)
T ss_dssp             CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred             CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence            888999999999998 566666654 5676 488988  3333322    367788899999875  8999999997666


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                      .+.+.       ..++.|+.++..-  +.++...+++.+..+++|+.+......-.  . ..+..++.+++  .+|.+.
T Consensus        79 ~~~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~--~-p~~~~~~~~i~~g~iG~i~  147 (349)
T 3i23_A           79 YDLAK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRF--D-GDYLAMKQVVEQGFLGEIN  147 (349)
T ss_dssp             HHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGG--C-HHHHHHHHHHHHTTTCSEE
T ss_pred             HHHHH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccC--C-HHHHHHHHHHhcCCCCCEE
Confidence            54443       3456777777553  45678888999988888886543221111  1 23445555554  456543

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.03  E-value=1.1e-09  Score=88.93  Aligned_cols=134  Identities=7%  Similarity=0.027  Sum_probs=92.5

Q ss_pred             CeEEEEeCChhhH-HHHHHHHHC-CCeE-EEEcCChHHHHHHHHc-CCc-----eecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSV-DMAASLIRS-GYKV-QAFEISDPLVDKFFML-GGI-----RSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~-~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g~~-----~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      +||||||+|.||. .+++.|.+. ++++ .++|+++++.+.+.+. |+.     ...+.+++++  ++|+|++|+|+..+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            5899999999997 899998875 4665 5899999998877654 654     4678888886  68999999997665


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                      .+.+.       ..++.|+.|+..  .+.+....+++.+..+++|+.+......-.  . ..+..++.+++  .+|.+.
T Consensus       164 ~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~--~-p~~~~~k~~i~~G~iG~i~  232 (433)
T 1h6d_A          164 AEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHY--D-PMNRAAVKLIRENQLGKLG  232 (433)
T ss_dssp             HHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGG--C-HHHHHHHHHHHTTSSCSEE
T ss_pred             HHHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhc--C-HHHHHHHHHHHcCCCCCcE
Confidence            54443       345677766554  355777888898888887876543321111  1 23445555554  466543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.03  E-value=1.8e-09  Score=84.59  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=52.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----H-------c-CCceecChhhhhcCCCEEEEecc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----M-------L-GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~-------~-g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |.+||+|||+|.||+++|..|+..|+ +|.+||+++++++...    +       . .+..+.+. +++++||+||++++
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            44699999999999999999999998 9999999998776421    1       0 13344566 78899999999983

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=99.02  E-value=8.4e-11  Score=90.12  Aligned_cols=112  Identities=8%  Similarity=-0.033  Sum_probs=79.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcC-CceecChhhhhcCCCEEEEeccChh--hhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLG-GIRSASPMDAGKDVSALVVVISHVD--QIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g-~~~~~~~~~~~~~~dvii~~v~~~~--~~~~v~~~   78 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|+++||++++.+++.+.. ....++..++++++|+||.++|..-  .....+  
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l--  195 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI--  195 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS--
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC--
Confidence            579999999999999999999998 8999999999876655321 1122345566788999999998532  111112  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                         -.+.++++.+++|.... |..+ .+.+..++.|.+.++.-
T Consensus       196 ---~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~Gl  233 (277)
T 3don_A          196 ---SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIYNGL  233 (277)
T ss_dssp             ---CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEECTH
T ss_pred             ---CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEeCCH
Confidence               12457889999999876 4433 46666777888776554

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=2.8e-09  Score=84.52  Aligned_cols=133  Identities=13%  Similarity=0.048  Sum_probs=92.7

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeE-EEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~   77 (173)
                      .||||||+|.||.. .+..+.+. +.++ .++|+++++.+. ...+.....+.+++++  +.|+|++|+|+..+.+.+. 
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~-   85 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLAR-   85 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHH-
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHH-
Confidence            58999999999997 67777665 6776 488999987652 1125677889999987  7899999999766654443 


Q ss_pred             CccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           78 GHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                            +.++.|+.++..-  +.+....+++.+..++.|+.+......-.  . ..+..++.+++  .+|.+.
T Consensus        86 ------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~--~-p~~~~~~~~i~~g~iG~i~  149 (364)
T 3e82_A           86 ------LALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRW--D-SDYLGIRQVIEQGTLGAVK  149 (364)
T ss_dssp             ------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTT--C-HHHHHHHHHHHHTTTCSEE
T ss_pred             ------HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccc--C-HHHHHHHHHHHcCCCcceE
Confidence                  4566788887764  56778888999988888876543221111  1 23455555554  566543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.02  E-value=1.3e-09  Score=84.60  Aligned_cols=104  Identities=11%  Similarity=0.008  Sum_probs=69.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHcCCc--eecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFMLGGI--RSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      +||+|||+|+||..+++.+.+. ++++. ++|+++++.+.   .|+.  ..++..+. .++|+|++|+|+..+.+.+.  
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~--   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTAL--   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHH--
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHH--
Confidence            5999999999999999999874 57776 79999987654   4544  23344444 68999999999655543332  


Q ss_pred             ccchhhcCCCCCEEEEcCCC---CHHHHHHHHHHHhcCCcee
Q 044797           79 HEGVLKGLQKGAVIILQSTI---LPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~---~~~~~~~l~~~l~~~g~~~  117 (173)
                           +.++.|+.+++....   ++...+++.+..++.|+.+
T Consensus        84 -----~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~  120 (304)
T 3bio_A           84 -----EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA  120 (304)
T ss_dssp             -----HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEE
T ss_pred             -----HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEE
Confidence                 456678999987543   4455677777777777644

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.01  E-value=5.6e-10  Score=85.08  Aligned_cols=113  Identities=12%  Similarity=-0.007  Sum_probs=81.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++.|+|+|.+|.+++..|.+.|.+|+++||++++.+.+.+.++... +.+++ .++|+||.++|.....+..+ ..+.+
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l-~~~~l  195 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL-NKEVL  195 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS-CHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC-ChHHH
Confidence            57999999999999999999999999999999999988775565443 34443 38999999998542211111 11122


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ...++++.+++|.... | .+. +.+..++.|...++.-
T Consensus       196 ~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~Gl  231 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQDGK  231 (269)
T ss_dssp             HHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEECSH
T ss_pred             HhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEECCH
Confidence            2356788999999875 5 433 6666777888766554

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.01  E-value=4.8e-09  Score=84.67  Aligned_cols=134  Identities=12%  Similarity=0.074  Sum_probs=94.1

Q ss_pred             CeEEEEeCCh---hhHHHHHHHHHCC-CeEE--EEcCChHHHHHHHHc-CC---ceecChhhhhcC-------CCEEEEe
Q 044797            3 SKVGFVGLDE---YSVDMAASLIRSG-YKVQ--AFEISDPLVDKFFML-GG---IRSASPMDAGKD-------VSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~---mG~~ia~~l~~~g-~~V~--~~d~~~~~~~~~~~~-g~---~~~~~~~~~~~~-------~dvii~~   65 (173)
                      .||||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+. |+   ...++.++++++       .|+|++|
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~  117 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV  117 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence            4899999999   9999998887766 5764  689999998887654 76   577889998865       8999999


Q ss_pred             ccChhhhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--h
Q 044797           66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--E  141 (173)
Q Consensus        66 v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~  141 (173)
                      +|+..+.+.+.       ..++.|+.|+..  -+.+....+++.+..++.|+.+......  -.. ..+..++.+++  .
T Consensus       118 tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~--R~~-p~~~~~k~~i~~G~  187 (417)
T 3v5n_A          118 TPNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNY--TGY-PMVRQAREMIENGD  187 (417)
T ss_dssp             SCTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGG--GGS-HHHHHHHHHHHTTT
T ss_pred             CCcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecc--cCC-HHHHHHHHHHhcCC
Confidence            99776654443       456778877654  2457778889999888888765432211  111 23455555554  5


Q ss_pred             hCCce
Q 044797          142 FFIDK  146 (173)
Q Consensus       142 ~g~~~  146 (173)
                      +|.+.
T Consensus       188 iG~i~  192 (417)
T 3v5n_A          188 IGAVR  192 (417)
T ss_dssp             TCSEE
T ss_pred             CCCeE
Confidence            66543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.01  E-value=1.7e-08  Score=78.47  Aligned_cols=134  Identities=14%  Similarity=0.099  Sum_probs=81.0

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH---c-------C--CceecChhhhhcCCCEEEEecc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM---L-------G--GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |++||+|||+|.||.+++..|+..|+ +|.++|+++++++....   .       .  +..+.+. +++++||+||++++
T Consensus         1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A            1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSG   79 (309)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCC
Confidence            78899999999999999999999997 99999999877654211   0       1  2233566 77899999999985


Q ss_pred             Chhh---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhH
Q 044797           68 HVDQ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCF  132 (173)
Q Consensus        68 ~~~~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~  132 (173)
                      .|..               ++++.   +.+.+.. |+.+++..|+ .......+.....  |  +-..+++.+|+.-+..
T Consensus        80 ~p~~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~vi~~tN-Pv~~~t~~~~~~~--~--~~~~rviG~gt~LD~~  150 (309)
T 1ur5_A           80 APRKPGMSREDLIKVNADITRACI---SQAAPLS-PNAVIIMVNN-PLDAMTYLAAEVS--G--FPKERVIGQAGVLDAA  150 (309)
T ss_dssp             C--------CHHHHHHHHHHHHHH---HHHGGGC-TTCEEEECCS-SHHHHHHHHHHHH--C--CCGGGEEECCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEcCC-chHHHHHHHHHHc--C--CCHHHEEECCcchHHH
Confidence            4321               12222   2344444 6777766543 4444433333322  2  2233456665554444


Q ss_pred             HHHHHHHHhhCC
Q 044797          133 TYLFLVKNEFFI  144 (173)
Q Consensus       133 ~~~~~~~~~~g~  144 (173)
                      .....+-+.+|.
T Consensus       151 r~~~~la~~lgv  162 (309)
T 1ur5_A          151 RYRTFIAMEAGV  162 (309)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCC
Confidence            444444455553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=99.01  E-value=2.1e-09  Score=75.24  Aligned_cols=105  Identities=11%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-HcCCcee-cC---h---hhh-hcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-MLGGIRS-AS---P---MDA-GKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~-~~---~---~~~-~~~~dvii~~v~~~~~~~   73 (173)
                      ++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+. ..|.... .+   .   .++ ++++|+||.+++++....
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~   99 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNF   99 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHH
Confidence            6899999999999999999999999999999999887766 4554332 11   1   222 567999999999765443


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .+.    .+...+.+...++...+ .+...    +.+.+.|+.
T Consensus       100 ~~~----~~~~~~~~~~~iv~~~~-~~~~~----~~l~~~G~~  133 (155)
T 2g1u_A          100 FIS----MNARYMFNVENVIARVY-DPEKI----KIFEENGIK  133 (155)
T ss_dssp             HHH----HHHHHTSCCSEEEEECS-SGGGH----HHHHTTTCE
T ss_pred             HHH----HHHHHHCCCCeEEEEEC-CHHHH----HHHHHCCCc
Confidence            333    23344344444444433 33333    334445654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.00  E-value=4.7e-09  Score=83.21  Aligned_cols=136  Identities=13%  Similarity=0.143  Sum_probs=93.9

Q ss_pred             CeEEEEeCChhhH-HHHHHHHHCCCeE-EEEcCChHHHHHHHHc-C-CceecChhhhhcC--CCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSV-DMAASLIRSGYKV-QAFEISDPLVDKFFML-G-GIRSASPMDAGKD--VSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~-~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~-g-~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~   76 (173)
                      .||||||+|.++. .++..+...+.++ .++|+++++.+.+.+. + ....++.++++++  .|+|++|+|+..+.+.+.
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~  106 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAI  106 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            5899999999994 5677777788886 5889999998887664 4 5678899999875  899999999666554443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCcee
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDKK  147 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~  147 (173)
                             ..++.|+.|+..  -+.+....+++.+..++.|+.+......-.  ....+..++.+++  .+|.+..
T Consensus       107 -------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~--~~p~~~~~k~~i~~g~iG~i~~  172 (361)
T 3u3x_A          107 -------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHF--ESPATVKAGELVAAGAIGEVVH  172 (361)
T ss_dssp             -------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHH--TCHHHHHHHHHHHTTTTSSEEE
T ss_pred             -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhh--CCHHHHHHHHHHHcCCCCCeEE
Confidence                   445677777654  345677888899988888875433221111  0023345555554  4665443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.99  E-value=8.4e-09  Score=79.99  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHH-c--C------CceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFM-L--G------GIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~-~--g------~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |||+|||+|.||++++..|+..|+  +|+++|+++++++.... .  .      .+...+..++++++|+||++++.+..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~   80 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK   80 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            599999999999999999999998  99999999887654211 1  1      12221234678899999999964331


Q ss_pred             ---------------hhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           72 ---------------IDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        72 ---------------~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                                     ++++.   +.+.++ .|+..++..++
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~~~vi~~tN  117 (304)
T 2v6b_A           81 PGESRLDLLEKNADIFRELV---PQITRA-APDAVLLVTSN  117 (304)
T ss_dssp             -------CHHHHHHHHHHHH---HHHHHH-CSSSEEEECSS
T ss_pred             CCCcHHHHHHhHHHHHHHHH---HHHHHh-CCCeEEEEecC
Confidence                           23333   345555 46777776544

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.99  E-value=3.5e-10  Score=85.59  Aligned_cols=108  Identities=10%  Similarity=-0.092  Sum_probs=76.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhh-hhhhcCcc
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQI-DDIFFGHE   80 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~-~~v~~~~~   80 (173)
                      +++|||+|.||.+++..|.+.|. +|+++||++++.+.+.+. +....++..+.++++|+||.++|..-.- ...+  + 
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i--~-  186 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV--S-  186 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC--C-
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC--C-
Confidence            78999999999999999999998 899999999998776543 2233455667788999999999843110 1111  0 


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce-eeec
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF-YILE  120 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~-~v~~  120 (173)
                        .+.++++.+++|.... +  +. +.+..++.|.+ .++.
T Consensus       187 --~~~l~~~~~V~Divy~-~--T~-ll~~A~~~G~~~~~~G  221 (253)
T 3u62_A          187 --DDSLKNLSLVYDVIYF-D--TP-LVVKARKLGVKHIIKG  221 (253)
T ss_dssp             --HHHHTTCSEEEECSSS-C--CH-HHHHHHHHTCSEEECT
T ss_pred             --HHHhCcCCEEEEeeCC-C--cH-HHHHHHHCCCcEEECC
Confidence              1345789999999876 2  22 33334455776 5543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.99  E-value=4.4e-09  Score=85.54  Aligned_cols=109  Identities=9%  Similarity=0.058  Sum_probs=83.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHH----cC---Cceec----Chhhhhc--CCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFM----LG---GIRSA----SPMDAGK--DVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~----~g---~~~~~----~~~~~~~--~~dvii~~v~   67 (173)
                      +||||||+|.||...+..+.+. +.++ .++|+++++.+.+.+    .|   ....+    +.+++++  +.|+|++|+|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            5899999999999999998875 5675 589999999887654    34   45666    8999887  5899999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +..+.+.+.       +.++.|+.|+..  .+.+....+++.+..++.|+.+.
T Consensus       101 ~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~  146 (444)
T 2ixa_A          101 WEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM  146 (444)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             cHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            766654443       456678877654  34567788888888888777654

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.99  E-value=3.7e-09  Score=83.95  Aligned_cols=132  Identities=10%  Similarity=-0.021  Sum_probs=90.0

Q ss_pred             eEEEEeCChhhHHHHHHHHHC--------CCeE-EEEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChh
Q 044797            4 KVGFVGLDEYSVDMAASLIRS--------GYKV-QAFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVD   70 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~--------g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~   70 (173)
                      ||||||+|.||...++.+.+.        +.+| .++|+++++.+++.+. |+ ...++.+++++  +.|+|++|+|+..
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~  106 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQF  106 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGG
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHH
Confidence            799999999999888776432        3565 5889999999887664 65 46788999886  5799999999776


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCc
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFID  145 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~  145 (173)
                      +.+.+.       ..++.|+.|+..  -+.+..+.+++.+..++.|+.+......-.  + ..+..++.+++  .+|.+
T Consensus       107 H~~~a~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~--~-p~~~~~k~~i~~G~iG~i  175 (393)
T 4fb5_A          107 HAEMAI-------AALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQ--N-PVMRHIRKLVGDGVIGRV  175 (393)
T ss_dssp             HHHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGG--C-HHHHHHHHHHHTTTTCSE
T ss_pred             HHHHHH-------HHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcccccccccc--C-hHHHHHHHHHHcCCCccc
Confidence            665554       455678888766  345677788899988888876443321111  1 23445555554  35654

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.98  E-value=4.1e-09  Score=83.17  Aligned_cols=132  Identities=14%  Similarity=0.044  Sum_probs=91.7

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcC--CCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKD--VSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~   76 (173)
                      .||||||+|.||.. .+..+.+. +.++. ++|+++++.+  ... +....++.++++++  .|+|++|+|+..+.+.+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~   85 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH--ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQ   85 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--TTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            58999999999997 77777765 56764 8899998876  222 56778899999875  899999999776655443


Q ss_pred             cCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCce
Q 044797           77 FGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFIDK  146 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~~  146 (173)
                             ..++.|+.++..-  +.+....+++.+..++.|+.+......-  ..+ .+..++.+++  .+|.+.
T Consensus        86 -------~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r--~~p-~~~~~~~~i~~g~iG~i~  149 (352)
T 3kux_A           86 -------SALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRR--WDS-DFLTLKTLLAEGSLGNVV  149 (352)
T ss_dssp             -------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGG--GCH-HHHHHHHHHHHTTTCSEE
T ss_pred             -------HHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecc--cCH-HHHHHHHHHhcCCCCceE
Confidence                   3456777766542  4677888899998888887654322111  112 3445555554  566543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.98  E-value=7e-10  Score=86.44  Aligned_cols=106  Identities=16%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHH-----cCC--ceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFM-----LGG--IRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      ++++|||+|.||..+++.|...  ..+|.+|||+  +.+++.+     .|+  ..+ +++++++++|+|++|+|..   .
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~  195 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T  195 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence            5899999999999999999863  3689999999  4444433     254  345 8899999999999999964   2


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC-ceeeec
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL-TFYILE  120 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g-~~~v~~  120 (173)
                      .++.     .+.+++|++|+++++..|.. +++...+-.+. ..|++.
T Consensus       196 pvl~-----~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~  237 (313)
T 3hdj_A          196 PLFA-----GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW  237 (313)
T ss_dssp             CSSC-----GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred             cccC-----HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence            3431     24689999999999987754 44443333333 445553

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.98  E-value=3.2e-09  Score=85.16  Aligned_cols=133  Identities=11%  Similarity=0.033  Sum_probs=94.2

Q ss_pred             CeEEEEeCCh---hhHHHHHHHHHCC-CeEE--EEcCChHHHHHHHH-cCC---ceecChhhhhcC-------CCEEEEe
Q 044797            3 SKVGFVGLDE---YSVDMAASLIRSG-YKVQ--AFEISDPLVDKFFM-LGG---IRSASPMDAGKD-------VSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~G~---mG~~ia~~l~~~g-~~V~--~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------~dvii~~   65 (173)
                      .||||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+ .|+   ...++.++++++       .|+|++|
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~   92 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIA   92 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEE
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEEC
Confidence            4899999999   9999999887765 6765  58999999888765 476   577889998864       9999999


Q ss_pred             ccChhhhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--h
Q 044797           66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--E  141 (173)
Q Consensus        66 v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~  141 (173)
                      +|+..+.+.+.       ..++.|+.|+..  .+.+....+++.+..++.|+.+......-  .. ..+..++.+++  .
T Consensus        93 tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r--~~-p~~~~~k~~i~~G~  162 (398)
T 3dty_A           93 TPNGTHYSITK-------AALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYA--GH-QLIEQAREMIAAGE  162 (398)
T ss_dssp             SCGGGHHHHHH-------HHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGG--GS-HHHHHHHHHHHTTT
T ss_pred             CCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEeccc--CC-HHHHHHHHHHhcCC
Confidence            99766654443       345678877765  34567788899998888887654332111  11 23445555554  4


Q ss_pred             hCCc
Q 044797          142 FFID  145 (173)
Q Consensus       142 ~g~~  145 (173)
                      +|.+
T Consensus       163 iG~i  166 (398)
T 3dty_A          163 LGDV  166 (398)
T ss_dssp             TCSE
T ss_pred             CCCe
Confidence            5654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.97  E-value=1.1e-09  Score=75.79  Aligned_cols=108  Identities=18%  Similarity=0.215  Sum_probs=78.9

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      .+|+|||+    |++|+.++++|.+.|++  +|++||.+. +.+  .|.....+..++-+..|++++++| +..+.+++ 
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp-~~~~~~v~-   87 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHL-   87 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH-
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeC-HHHHHHHH-
Confidence            58999999    89999999999999997  677777642 111  366777789998888999999999 46677776 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                        +++.+.- .+.+++..++.    .+++.+.++++|++++...+.
T Consensus        88 --~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vgpnc~  126 (140)
T 1iuk_A           88 --PEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVADRCL  126 (140)
T ss_dssp             --HHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEESCCH
T ss_pred             --HHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEcCCcc
Confidence              3344332 23566654443    367788888899998865433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.97  E-value=4.1e-09  Score=81.93  Aligned_cols=103  Identities=13%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHH--HHH-HcC------Ccee-cChhhhhcCCCEEEEeccC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVD--KFF-MLG------GIRS-ASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~-~~g------~~~~-~~~~~~~~~~dvii~~v~~   68 (173)
                      ++|||+|||+|.||+.++..|...|+  +|+++|+++++.+  .+. ..+      .... .+..+.++++|+||++++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP   85 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence            35799999999999999999999998  9999999987765  221 112      1211 1123567899999999964


Q ss_pred             hh---------------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHH
Q 044797           69 VD---------------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK  108 (173)
Q Consensus        69 ~~---------------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~  108 (173)
                      ++               .+++++   +.+.+. .++.+++..++ .......+.+
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~---~~i~~~-~~~~~vi~~~N-p~~~~~~~~~  135 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIM---PNLVKV-APNAIYMLITN-PVDIATHVAQ  135 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTSEEEECCS-SHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCceEEEecC-chHHHHHHHH
Confidence            32               111333   234443 56777777655 3333344443

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.97  E-value=5.4e-09  Score=82.13  Aligned_cols=134  Identities=13%  Similarity=0.038  Sum_probs=93.9

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~   74 (173)
                      .||||||+| .+|...+..+.+.  +.++ .++|+++++.+.+.+. ++ ...++.+++++  +.|+|++|+|+..+.+.
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   98 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   98 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence            589999999 8999999999876  4565 6899999998887654 65 67889999886  58999999997655443


Q ss_pred             hhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHH--HhhCCce
Q 044797           75 IFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVK--NEFFIDK  146 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~--~~~g~~~  146 (173)
                      +.       ..++.|+.++..-  +.+....+++.+..++.|+.+........   ...+..++.++  ..+|.+.
T Consensus        99 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~---~p~~~~~k~~i~~g~iG~i~  164 (340)
T 1zh8_A           99 IE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRH---VPAFWKAKELVESGAIGDPV  164 (340)
T ss_dssp             HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGG---CHHHHHHHHHHHTTTTSSEE
T ss_pred             HH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccC---CHHHHHHHHHHhcCCCCCcE
Confidence            33       3456677776553  35777888898888888876543221111   12344555555  4456543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.97  E-value=1.4e-09  Score=86.21  Aligned_cols=156  Identities=12%  Similarity=0.026  Sum_probs=96.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhc-CCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGK-DVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+. +.+.. +..++.. +||+++.|...+     ++..  
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~-----~I~~--  245 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGA-----VLND--  245 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSC-----CBST--
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHH-----HhCH--
Confidence            589999999999999999999999999999999988876654 66554 3445444 899999886422     2211  


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece--------ee---eeecC-HhhHHHHHHHHHhhCCc---
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER--------MF---LISSS-IDCFTYLFLVKNEFFID---  145 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~--------~~---~~~g~-~~~~~~~~~~~~~~g~~---  145 (173)
                      +..+.+ ..++ |..++..|.+..+..+.+.+.|+.++.+.        +.   +++-+ +++.++++.+.+.+..+   
T Consensus       246 ~~~~~l-g~~i-V~e~An~p~t~~ea~~~L~~~Gi~~~Pd~~~NaGGv~~s~~E~~~~~~e~v~~~l~~i~~~~~~i~~~  323 (364)
T 1leh_A          246 FTIPQL-KAKV-IAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVADELYGYNRTRAMKRVDGIYDSIEKIFAI  323 (364)
T ss_dssp             THHHHC-CCSE-ECCSCSCCBSSHHHHHHHHHHTCEECCHHHHTTHHHHHHHHGGGCCCHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHhC-CCcE-EEeCCCCCcccHHHHHHHHhCCCEEecceeecCCceEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            123344 2344 44444556555567788888899876543        10   02222 34555566555433221   


Q ss_pred             -eeecCCCchHhHhHHhHhhhHhhh
Q 044797          146 -KKVNISGQEIHWGYLKINYFIRVM  169 (173)
Q Consensus       146 -~~~g~~Gsg~a~~~~~~~~~~~~~  169 (173)
                       ..-+.+-.-.||. ++++.+.+++
T Consensus       324 ~~~~~~~~~~aA~~-~a~~ri~~a~  347 (364)
T 1leh_A          324 SKRDGVPSYVAADR-MAEERIAKVA  347 (364)
T ss_dssp             HHHTTCCHHHHHHH-HHHHHHHHHH
T ss_pred             HHHhCcCHHHHHHH-HHHHHHHHHH
Confidence             1224444444554 4456665554

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.96  E-value=3.9e-09  Score=85.21  Aligned_cols=91  Identities=14%  Similarity=0.073  Sum_probs=73.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++++|+|+|.+|..+|+.+...|.+|+++|+++.+.......|.... +.+++++.+|+|+.++...    .++.  .+.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atgt~----~lI~--~e~  320 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTGNK----DVIT--IDH  320 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCSSS----SSBC--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCCCc----cccC--HHH
Confidence            58999999999999999999999999999999877655555676654 6899999999999886532    2331  235


Q ss_pred             hhcCCCCCEEEEcCCCCH
Q 044797           83 LKGLQKGAVIILQSTILP  100 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~  100 (173)
                      ++.+++|.++++++....
T Consensus       321 l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          321 MRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             HHHSCTTEEEEECSSSTT
T ss_pred             HhcCCCCeEEEEcCCCCc
Confidence            577899999999988764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.95  E-value=1.8e-08  Score=78.98  Aligned_cols=64  Identities=13%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----H----c--C--CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----M----L--G--GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~----~--g--~~~~~~~~~~~~~~dvii~~v   66 (173)
                      |||+|||+|.||+++|..|+..|+ +|.+||+++++++...    +    .  .  +..+.+++++++++|+||+++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            689999999999999999999998 9999999988776521    1    1  1  233567877899999999998

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.94  E-value=1.7e-09  Score=86.24  Aligned_cols=92  Identities=13%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-cCCce------ecChhhhhcCCCEEEEeccChh-hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-LGGIR------SASPMDAGKDVSALVVVISHVD-QIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~------~~~~~~~~~~~dvii~~v~~~~-~~~~   74 (173)
                      ++|+|+|+|.+|..+++.+...|.+|+++|+++++.+.+.+ .|...      ..+..+.++++|+||.|++.+. ....
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~~  248 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPK  248 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCcc
Confidence            58999999999999999999999999999999999887766 35432      2245567788999999886443 2222


Q ss_pred             hhcCccchhhcCCCCCEEEEcC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ++.  ++..+.++++.+|++++
T Consensus       249 li~--~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          249 LVS--NSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CBC--HHHHTTSCTTCEEEEGG
T ss_pred             eec--HHHHhcCCCCcEEEEEe
Confidence            221  23456789999999997

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.93  E-value=4.4e-09  Score=84.63  Aligned_cols=109  Identities=7%  Similarity=0.059  Sum_probs=83.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC---------CCeE-EEEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS---------GYKV-QAFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~---------g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~   68 (173)
                      .||||||+|.||...+..+.+.         +.+| .++|+++++.+++.+. ++ ...++.+++++  +.|+|++|+|+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999999888764         3455 5789999999887664 65 46788999886  58999999997


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ..+.+.+.       ..++.|+.|+..  -+.+....+++.+..++.|+.+.
T Consensus       107 ~~H~~~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~  151 (412)
T 4gqa_A          107 HLHYTMAM-------AAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM  151 (412)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHH-------HHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence            76655444       456678877765  34567778888888887777643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.93  E-value=1.5e-09  Score=86.11  Aligned_cols=108  Identities=10%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC------CceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG------GIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g------~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |||.|+|+|.+|+.+++.|.+ .++|.++|++.++++++.+..      +.-.+++.++++++|+||.|+|.. .-..+.
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~   94 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF-LGFKSI   94 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG-GHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc-ccchHH
Confidence            799999999999999999865 589999999999988876542      111223456678999999999943 223333


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                            ...++.|+.++|.|-. +....++.+..++.|+..+.
T Consensus        95 ------~~~~~~g~~yvD~s~~-~~~~~~l~~~a~~~g~~~i~  130 (365)
T 3abi_A           95 ------KAAIKSKVDMVDVSFM-PENPLELRDEAEKAQVTIVF  130 (365)
T ss_dssp             ------HHHHHHTCEEEECCCC-SSCGGGGHHHHHHTTCEEEC
T ss_pred             ------HHHHhcCcceEeeecc-chhhhhhhhhhccCCceeee
Confidence                  2446678999998754 34456677777778876654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.93  E-value=5.7e-09  Score=84.00  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=73.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++++|+|+|.+|..+|+.+...|.+|+++|+++.+.......|... .+.+++++.+|+|++|...    ..++.  .+.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt----~~lI~--~e~  293 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGN----KNVVT--REH  293 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSC----SCSBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCC----cccCC--HHH
Confidence            5899999999999999999999999999999998766555667554 4689999999999997322    23331  235


Q ss_pred             hhcCCCCCEEEEcCCCCHH
Q 044797           83 LKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~  101 (173)
                      ++.+++|.++++++...++
T Consensus       294 l~~MK~gailINvgrg~~E  312 (435)
T 3gvp_A          294 LDRMKNSCIVCNMGHSNTE  312 (435)
T ss_dssp             HHHSCTTEEEEECSSTTTT
T ss_pred             HHhcCCCcEEEEecCCCcc
Confidence            5778999999999987653

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.93  E-value=1.6e-09  Score=85.01  Aligned_cols=136  Identities=7%  Similarity=-0.051  Sum_probs=90.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCCh-HHHHHHHH----cC--CceecChhhhhc--CCCEEEEeccChh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISD-PLVDKFFM----LG--GIRSASPMDAGK--DVSALVVVISHVD   70 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~-~~~~~~~~----~g--~~~~~~~~~~~~--~~dvii~~v~~~~   70 (173)
                      |++||||||+|.+|...++.+ ..+.++. ++|+++ ++.+++.+    .+  ....++.+++++  +.|+|++|+|+..
T Consensus         1 M~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A            1 MSLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL   79 (337)
T ss_dssp             -CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred             CceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence            889999999999999887777 5667765 789887 34443332    24  367788999886  4899999999666


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCce--eeeceeeeeecCHhhHHHHHHHHH--hhCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTF--YILERMFLISSSIDCFTYLFLVKN--EFFI  144 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~--~v~~~~~~~~g~~~~~~~~~~~~~--~~g~  144 (173)
                      +.+.+.       +.++.|+.++..  -+.+....+++.+..++.|+.  +......  -.. ..+..++.+++  .+|.
T Consensus        80 H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~--R~~-p~~~~~k~~i~~g~iG~  149 (337)
T 3ip3_A           80 NGKILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGI--RYR-PHFLTAKKLVSEGAVGE  149 (337)
T ss_dssp             HHHHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGG--GGS-HHHHHHHHHHHHTTTSS
T ss_pred             HHHHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccc--cCC-HHHHHHHHHHhcCCccc
Confidence            554443       445677877764  345667788888888887765  2222211  112 23456666665  6776


Q ss_pred             cee
Q 044797          145 DKK  147 (173)
Q Consensus       145 ~~~  147 (173)
                      +..
T Consensus       150 i~~  152 (337)
T 3ip3_A          150 IRL  152 (337)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.93  E-value=3.6e-08  Score=77.03  Aligned_cols=133  Identities=14%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----H----c--C--CceecChhhhhcCCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----M----L--G--GIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~----~--g--~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      ++||+|||+|.||.+++..|+..|+ +|.++|+++++++...    +    .  .  +..+.+. +++++||+||++++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4799999999999999999999998 9999999988775321    1    1  1  2334566 789999999999832


Q ss_pred             hh--------------------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecC
Q 044797           69 VD--------------------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSS  128 (173)
Q Consensus        69 ~~--------------------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~  128 (173)
                      |.                    .++++.   +.+.+.. |+.+++..|+ .....-++.....  |  +-..+++.+++.
T Consensus        83 p~k~g~~~qe~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~tN-P~~~~t~~~~~~~--g--~~~~rviG~gt~  153 (322)
T 1t2d_A           83 TKAPGKSDKEWNRDDLLPLNNKIMIEIG---GHIKKNC-PNAFIIVVTN-PVDVMVQLLHQHS--G--VPKNKIIGLGGV  153 (322)
T ss_dssp             SSCTTCCSTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECSS-SHHHHHHHHHHHH--C--CCGGGEEECCHH
T ss_pred             CCCCCCCcccccHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecC-ChHHHHHHHHHhc--C--CChHHEEeccCc
Confidence            21                    122333   2454555 6777766544 3333333333322  1  122345556544


Q ss_pred             HhhHHHHHHHHHhhCC
Q 044797          129 IDCFTYLFLVKNEFFI  144 (173)
Q Consensus       129 ~~~~~~~~~~~~~~g~  144 (173)
                      .+.......+-+.+|.
T Consensus       154 ld~~R~~~~la~~lgv  169 (322)
T 1t2d_A          154 LDTSRLKYYISQKLNV  169 (322)
T ss_dssp             HHHHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHHhCC
Confidence            4433333344455553

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.92  E-value=4.4e-09  Score=83.31  Aligned_cols=132  Identities=11%  Similarity=-0.016  Sum_probs=90.5

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeE-EEEcCChHHHHHHHHc-CCceecChhhhhcC--CCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGKD--VSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~   76 (173)
                      .||||||+|.||.. .+..+.+. +.++ .++|+++++..  .+. +....++.++++++  .|+|++|+|+..+.+.+.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~   83 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAG   83 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            58999999999997 67777665 6676 48899987732  223 56778899999876  899999999766654443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCce
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFIDK  146 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~~  146 (173)
                             ..+..|+.++..  -+.+....+++.+..++.|+.+......-.   ...+..++.+++.  +|.+.
T Consensus        84 -------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~---~p~~~~~k~~i~~G~iG~i~  147 (362)
T 3fhl_A           84 -------MALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRW---DADFLTVRDILAKSLLGRLV  147 (362)
T ss_dssp             -------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGG---SHHHHHHHHHHHTTTTSSEE
T ss_pred             -------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEeccee---CHHHHHHHHHHHcCCCCCeE
Confidence                   345677777654  345777888898888887776443221111   1234566666654  67643

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.91  E-value=8e-09  Score=81.71  Aligned_cols=131  Identities=10%  Similarity=0.036  Sum_probs=89.9

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeE-EEEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~   76 (173)
                      .||||||+|.||.. .+..+.+. ++++ .++|+++++..  .+. +.....+.+++++  +.|+|++|+|+..+.+.+.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~   83 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTM   83 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            58999999999997 67777665 5676 58899987732  233 5677889999987  6899999999776655443


Q ss_pred             cCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCc
Q 044797           77 FGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFID  145 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~  145 (173)
                             ..++.|+.++..-  +.+....+++.+..++.|+.+......-  .. ..+..++.+++  .+|.+
T Consensus        84 -------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r--~~-p~~~~~k~~i~~g~iG~i  146 (358)
T 3gdo_A           84 -------ACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRR--WD-NDFLTIKKLISEGSLEDI  146 (358)
T ss_dssp             -------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGG--GS-HHHHHHHHHHHTTSSCSC
T ss_pred             -------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecc--cC-HHHHHHHHHHhcCCCCce
Confidence                   4456778776543  4567788889888888777543221111  11 23455566654  45654

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.91  E-value=2.3e-09  Score=83.74  Aligned_cols=102  Identities=13%  Similarity=0.088  Sum_probs=71.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      +||+|||+|+||..+++.+.+. +.++ .++|+++++  .+. .++...++.++++.++|+|++|+|+..+.+.+.    
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~----   76 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA----   76 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH----
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH----
Confidence            6999999999999999999876 4564 588998655  222 455556677787788999999999654544443    


Q ss_pred             chhhcCCCCCEEEEcCCCC--HHHH-HHHHHHHhcCC
Q 044797           81 GVLKGLQKGAVIILQSTIL--PSHM-QKLEKTFTGNL  114 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~--~~~~-~~l~~~l~~~g  114 (173)
                         ..++.|+.++...+..  .... +++.+..++.+
T Consensus        77 ---~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           77 ---PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             ---HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence               4456788888776542  3333 56666655433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.90  E-value=4.6e-09  Score=71.80  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=52.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cChh---hh-hcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASPM---DA-GKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~   69 (173)
                      ++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+....    .+.+   ++ ++++|+|+.+++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            57999999999999999999999999999999988877665554321    1222   22 56799999999864

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.90  E-value=4.7e-09  Score=85.27  Aligned_cols=134  Identities=9%  Similarity=-0.021  Sum_probs=93.5

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHHc-CCc---eecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFML-GGI---RSASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~~---~~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      +||||||+    |.||..+++.|.+.  ++++ .++|+++++.+.+.+. |+.   ...+.+++++  +.|+|++|+|+.
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence            58999999    99999999999886  6776 5899999998877664 654   6788999886  689999999976


Q ss_pred             hhhhhhhcCccchhhcCCCC------CEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH-
Q 044797           70 DQIDDIFFGHEGVLKGLQKG------AVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN-  140 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g------~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~-  140 (173)
                      .+.+.+.       ..++.|      +.|+..  .+.+....+++.+..++.|+.+......-.  . ..+..++.+++ 
T Consensus       101 ~H~~~~~-------~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~--~-p~~~~~k~~i~~  170 (438)
T 3btv_A          101 SHYEVVM-------PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRK--S-PYILRAKELISQ  170 (438)
T ss_dssp             HHHHHHH-------HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGG--C-HHHHHHHHHHHT
T ss_pred             HHHHHHH-------HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEeccccc--C-HHHHHHHHHHHc
Confidence            6655443       234445      555443  456788889999998888876443221111  1 23445555554 


Q ss_pred             -hhCCce
Q 044797          141 -EFFIDK  146 (173)
Q Consensus       141 -~~g~~~  146 (173)
                       .+|.+.
T Consensus       171 G~iG~i~  177 (438)
T 3btv_A          171 GYIGDIN  177 (438)
T ss_dssp             TTTCSEE
T ss_pred             CCCCCcE
Confidence             466543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.90  E-value=4e-09  Score=84.01  Aligned_cols=114  Identities=12%  Similarity=0.116  Sum_probs=86.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .||+|||+| +|...++.+.+.  ++++. ++|+++++.+++.+. |+...++.++++++.|++++++|+..+...-.  
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~--   84 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGT--   84 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHH--
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHH--
Confidence            589999999 799888888764  56765 789999998887654 88888999999999999999999654421111  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                       +-....++.|+.|+..-..++++.+++.+..+++|+.+...
T Consensus        85 -~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v~  125 (372)
T 4gmf_A           85 -QLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWIN  125 (372)
T ss_dssp             -HHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             -HHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEEc
Confidence             01224567788888776677888899999888888876543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.89  E-value=8.5e-09  Score=81.79  Aligned_cols=110  Identities=9%  Similarity=0.008  Sum_probs=79.3

Q ss_pred             CCC-eEEEEeCChhhHHHHHHHHHCC--------CeE-EEEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEec
Q 044797            1 MAS-KVGFVGLDEYSVDMAASLIRSG--------YKV-QAFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVI   66 (173)
Q Consensus         1 m~~-~IgiiG~G~mG~~ia~~l~~~g--------~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v   66 (173)
                      |.+ ||||||+|.||...+..+.+..        .+| .++|+++++.+.+.+. |+ ...++.+++++  +.|+|++|+
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~t   83 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCT   83 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECS
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence            443 8999999999999888876532        244 5889999999887664 65 46778999886  489999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHH---HhcCCcee
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKT---FTGNLTFY  117 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~---l~~~g~~~  117 (173)
                      |+..+.+.+.       ..++.|+.|+..  -+.+..+.+++.+.   .++.|+.+
T Consensus        84 P~~~H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~  132 (390)
T 4h3v_A           84 PGDSHAEIAI-------AALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS  132 (390)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ChHHHHHHHH-------HHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence            9777665554       456678887765  33456667777444   55566654

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.87  E-value=9.2e-09  Score=71.34  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=74.9

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .+|+|||+    |++|..++++|.+.|++  +|+.++.. +.+  .|.....++.++.+..|++++++| +..+.+++  
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp-~~~~~~vv--   94 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV--   94 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH--
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHH--
Confidence            57999999    79999999999999997  45555543 111  366777789998888999999999 45666676  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                       +++.+.- .+.+++..++.    .+++.+.++++|++++...
T Consensus        95 -~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGpn  131 (144)
T 2d59_A           95 -EQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVANR  131 (144)
T ss_dssp             -HHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEESC
T ss_pred             -HHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcCC
Confidence             2333322 23444443332    4678888888999987654

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.87  E-value=1.4e-08  Score=83.41  Aligned_cols=134  Identities=10%  Similarity=-0.034  Sum_probs=93.5

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHHc-CCc---eecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFML-GGI---RSASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~~---~~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      +||||||+    |.||...++.|.+.  ++++ .++|+++++.+.+.+. |+.   ...+.+++++  +.|+|++|+|+.
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~  119 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP  119 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence            58999999    99999999999886  6776 5899999998877664 654   7788999885  689999999976


Q ss_pred             hhhhhhhcCccchhhcCCCC------CEE-EEc-CCCCHHHHHHHHHHHhcCC-ceeeeceeeeeecCHhhHHHHHHHHH
Q 044797           70 DQIDDIFFGHEGVLKGLQKG------AVI-ILQ-STILPSHMQKLEKTFTGNL-TFYILERMFLISSSIDCFTYLFLVKN  140 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g------~~i-i~~-st~~~~~~~~l~~~l~~~g-~~~v~~~~~~~~g~~~~~~~~~~~~~  140 (173)
                      .+.+.+.       ..+..|      +.| +.- .+.++...+++.+..++.| +.+......-.  . ..+..++.+++
T Consensus       120 ~H~~~~~-------~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v~~~~R~--~-p~~~~~k~~i~  189 (479)
T 2nvw_A          120 EHYEVVK-------NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRK--S-PYIVRAKELIS  189 (479)
T ss_dssp             HHHHHHH-------HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGG--C-HHHHHHHHHHH
T ss_pred             HHHHHHH-------HHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEEecccc--C-HHHHHHHHHHH
Confidence            6654443       234456      544 444 3567788899999988888 75433221111  1 23445555554


Q ss_pred             --hhCCce
Q 044797          141 --EFFIDK  146 (173)
Q Consensus       141 --~~g~~~  146 (173)
                        .+|.+.
T Consensus       190 ~G~iG~i~  197 (479)
T 2nvw_A          190 EGCIGDIN  197 (479)
T ss_dssp             TTTTCSEE
T ss_pred             cCCCCCeE
Confidence              466543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.85  E-value=6.4e-09  Score=83.59  Aligned_cols=92  Identities=16%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec---------------------------Chhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA---------------------------SPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---------------------------~~~~~   55 (173)
                      .+|+|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.|.....                           +..+.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~  252 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQ  252 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999998887777765432                           24566


Q ss_pred             hcCCCEEEEe--ccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           56 GKDVSALVVV--ISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        56 ~~~~dvii~~--v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +.++|+||.+  +|... ...++.  .+..+.+++|.+|+|++.
T Consensus       253 ~~~aDvVI~~~~~pg~~-ap~li~--~~~l~~mk~g~vIVdva~  293 (401)
T 1x13_A          253 AKEVDIIVTTALIPGKP-APKLIT--REMVDSMKAGSVIVDLAA  293 (401)
T ss_dssp             HHHCSEEEECCCCTTSC-CCCCBC--HHHHHTSCTTCEEEETTG
T ss_pred             hCCCCEEEECCccCCCC-CCeeeC--HHHHhcCCCCcEEEEEcC
Confidence            7789999999  44211 112221  234567899999999983

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.84  E-value=2.7e-08  Score=79.99  Aligned_cols=89  Identities=13%  Similarity=0.073  Sum_probs=73.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh------HHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD------PLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~------~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      ++|+|||+|..|.+.|.+|+.+|.+|.+--|..      .+.+++.+.|.++. +..++++.+|+|++.+||.. -..++
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~-q~~vy  115 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQ-HSDVV  115 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGG-HHHHH
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhh-HHHHH
Confidence            689999999999999999999999999887733      34456677787765 58999999999999999654 45666


Q ss_pred             cCccchhhcCCCCCEEEEcC
Q 044797           77 FGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s   96 (173)
                         +.+.+++++|+.+.-+.
T Consensus       116 ---~~I~p~lk~G~~L~faH  132 (491)
T 3ulk_A          116 ---RTVQPLMKDGAALGYSH  132 (491)
T ss_dssp             ---HHHGGGSCTTCEEEESS
T ss_pred             ---HHHHhhCCCCCEEEecC
Confidence               45899999999887543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.84  E-value=1.3e-08  Score=79.10  Aligned_cols=134  Identities=10%  Similarity=0.004  Sum_probs=91.3

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeE-EEEcCChHHHHHHHHc--CCceecChhhhh----------cCCCEEEEecc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKV-QAFEISDPLVDKFFML--GGIRSASPMDAG----------KDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~--g~~~~~~~~~~~----------~~~dvii~~v~   67 (173)
                      |+||||||+ |.+|...+..+.+.+.++ .++|+++++. .+.+.  +.....+.++++          .+.|+|++|+|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP   81 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP   81 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence            579999999 789999999999888775 5889998873 22222  456777888876          57899999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhhCCc
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~g~~  145 (173)
                      +..+.+.+.       ..++.|+.++..  -+.+....+++.+..+++|+.+......-  -. ..+..++.+++.-|.+
T Consensus        82 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R--~~-p~~~~~k~~i~~gG~i  151 (312)
T 3o9z_A           82 NHLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLR--VH-PSLLALKERLGQEKGA  151 (312)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGG--GC-HHHHHHHHHHHTCCSC
T ss_pred             chhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehh--cC-HHHHHHHHHHHcCCCE
Confidence            766654443       456678887765  24567788889888888877653332111  11 2344455555433654


Q ss_pred             e
Q 044797          146 K  146 (173)
Q Consensus       146 ~  146 (173)
                      .
T Consensus       152 ~  152 (312)
T 3o9z_A          152 K  152 (312)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.83  E-value=3e-08  Score=73.03  Aligned_cols=69  Identities=19%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-cCCcee----cC---hhhh-hcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-LGGIRS----AS---PMDA-GKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~----~~---~~~~-~~~~dvii~~v~~~~~   71 (173)
                      |||.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+ .+....    .+   +.++ ++++|+++++++++..
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~   78 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV   78 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH
Confidence            58999999999999999999999999999999999988764 344321    11   2232 6789999999997543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.83  E-value=1.3e-08  Score=79.28  Aligned_cols=110  Identities=11%  Similarity=0.053  Sum_probs=82.3

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeE-EEEcCChHHHHHHHHc--CCceecChhhhh-----------cCCCEEEEec
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKV-QAFEISDPLVDKFFML--GGIRSASPMDAG-----------KDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~--g~~~~~~~~~~~-----------~~~dvii~~v   66 (173)
                      |+||||||+ |.||...+..+.+.+.++ .++|+++++. .+.+.  +....++.++++           .+.|+|++|+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t   81 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS   81 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence            579999999 789999999999888775 5889998763 22222  466777888876           4689999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeee
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      |+..+.+.+.       ..++.|+.++..-  +.++...+++.+..+++|+.+..
T Consensus        82 P~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v  129 (318)
T 3oa2_A           82 PNYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYN  129 (318)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred             CcHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence            9766654443       4456778777653  45778888898888888776543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.82  E-value=1.1e-08  Score=81.32  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=68.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-cCCce------ecChhhhhcCCCEEEEeccChh-hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-LGGIR------SASPMDAGKDVSALVVVISHVD-QIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~------~~~~~~~~~~~dvii~~v~~~~-~~~~   74 (173)
                      ++|+|+|+|.+|..+++.+...|++|+++|+++++.+.+.+ .|...      ..+..+.++++|+||.+++.+. ....
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~  246 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPK  246 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccch
Confidence            58999999999999999999999999999999998877765 34431      2234566788999999998543 1222


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .+.  ++..+.++++..|++.+..
T Consensus       247 li~--~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          247 LVT--RDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             CSC--HHHHTTSCTTCEEEECC--
T ss_pred             hHH--HHHHHhhcCCCEEEEEecC
Confidence            221  2345678899999999754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.80  E-value=7.7e-09  Score=78.99  Aligned_cols=113  Identities=15%  Similarity=0.043  Sum_probs=79.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhh---hhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQID---DIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~---~v~~   77 (173)
                      +++.|+|+|.+|.+++..|...|. +|+++||++++.+.+.+. +.....+..  ..++|+||.++|.+....   +.. 
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~-  196 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL-  196 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC-
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC-
Confidence            479999999999999999999997 899999999998887654 433322222  467999999999543211   111 


Q ss_pred             Cccch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           78 GHEGV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        78 ~~~~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                         .+ ...++++.+++|... .|..+ .+.+..+++|.++++...+
T Consensus       197 ---~~~~~~l~~~~~v~DlvY-~P~~T-~ll~~A~~~G~~~i~Gl~M  238 (271)
T 1npy_A          197 ---AFPKAFIDNASVAFDVVA-MPVET-PFIRYAQARGKQTISGAAV  238 (271)
T ss_dssp             ---SSCHHHHHHCSEEEECCC-SSSSC-HHHHHHHHTTCEEECHHHH
T ss_pred             ---CCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCCCEEECCHHH
Confidence               01 123456889999986 45444 5666777889887765433

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.79  E-value=1.9e-08  Score=80.37  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=69.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cC---------------------------hh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--AS---------------------------PM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~---------------------------~~   53 (173)
                      .+|+|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.|....  +.                           ..
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            58999999999999999999999999999999988887777776543  11                           45


Q ss_pred             hhhcCCCEEEEeccChh-hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           54 DAGKDVSALVVVISHVD-QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        54 ~~~~~~dvii~~v~~~~-~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +.++++|+||.+++.|. ....++.  ++..+.++++.+|+|.+
T Consensus       253 ~~~~~aDvVi~~~~~pg~~~~~li~--~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGKPAPVLIT--EEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCSC--HHHHTTSCTTCEEEETT
T ss_pred             HHhCCCCEEEECCccCCCCCCeeeC--HHHHhcCCCCCEEEEEe
Confidence            66788999999983321 1112221  23446789999999997

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.78  E-value=7e-09  Score=79.61  Aligned_cols=113  Identities=5%  Similarity=-0.096  Sum_probs=78.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-C---CceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-G---GIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g---~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|+++||++++.+++.+. +   -....+.+++.+++|+||.++|.....+....
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l  206 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAI  206 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CSC
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCC
Confidence            579999999999999999999996 999999999998876653 1   11222455555789999999996533221111


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce-eeece
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF-YILER  121 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~-~v~~~  121 (173)
                      .    .+.++++.+++|.... |..+. +.+..+++|.. .++.-
T Consensus       207 ~----~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~Gl  245 (281)
T 3o8q_A          207 D----PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQAIDGL  245 (281)
T ss_dssp             C----GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSEEECTH
T ss_pred             C----HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCEEECcH
Confidence            1    1346778899999875 44444 34566778887 55543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.76  E-value=4.2e-07  Score=70.82  Aligned_cols=133  Identities=14%  Similarity=0.140  Sum_probs=80.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHH----HH------cCCceecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKF----FM------LGGIRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~----~~------~g~~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      +||+|||+|.+|.+++..|...|  .++.++|+++++++..    .+      .......+..+++++||+||++.+.+.
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~~   86 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ   86 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCCC
Confidence            59999999999999999999888  4899999998766531    11      122333355777999999999986432


Q ss_pred             h---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797           71 Q---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYL  135 (173)
Q Consensus        71 ~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~  135 (173)
                      .               ++++.   +.+.++ .|+..++..| ......-.......  +  +-..+++.+++.-+.....
T Consensus        87 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~t-NPv~~~t~~~~k~~--~--~p~~rviG~gt~lD~~r~~  157 (317)
T 3d0o_A           87 KPGETRLDLVSKNLKIFKSIV---GEVMAS-KFDGIFLVAT-NPVDILAYATWKFS--G--LPKERVIGSGTILDSARFR  157 (317)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH---HHHHHT-TCCSEEEECS-SSHHHHHHHHHHHH--C--CCGGGEEECTTHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEec-CcHHHHHHHHHHHh--C--CCHHHEEecCccccHHHHH
Confidence            1               12222   234444 5677777754 34444333333332  1  2223455555544444444


Q ss_pred             HHHHHhhCC
Q 044797          136 FLVKNEFFI  144 (173)
Q Consensus       136 ~~~~~~~g~  144 (173)
                      ..+-+.+|.
T Consensus       158 ~~la~~l~v  166 (317)
T 3d0o_A          158 LLLSEAFDV  166 (317)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHhCc
Confidence            444455553

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.75  E-value=6.9e-08  Score=76.84  Aligned_cols=109  Identities=7%  Similarity=-0.041  Sum_probs=82.1

Q ss_pred             CeEEEEe-CChhhHH-HH----HHHHHCC-CeE----------EEEcCChHHHHHHHH-cCC-ceecChhhhhcC--CCE
Q 044797            3 SKVGFVG-LDEYSVD-MA----ASLIRSG-YKV----------QAFEISDPLVDKFFM-LGG-IRSASPMDAGKD--VSA   61 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~-ia----~~l~~~g-~~V----------~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--~dv   61 (173)
                      +|||+|| +|.||.. .+    ..+.+.+ ..+          .++|+++++.+.+.+ .|+ ...++.++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4899999 9999998 77    7776554 222          499999999988765 476 467889999865  899


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceee
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      |++|+|+..+.+.+.       ..++.|+.++..-  +.+....+++.+..+++|+.+.
T Consensus        87 V~i~tp~~~h~~~~~-------~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~  138 (383)
T 3oqb_A           87 FFDAATTQARPGLLT-------QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG  138 (383)
T ss_dssp             EEECSCSSSSHHHHH-------HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             EEECCCchHHHHHHH-------HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            999999766544333       4567788887643  4577788889998888887543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.73  E-value=6.1e-08  Score=74.81  Aligned_cols=65  Identities=18%  Similarity=0.169  Sum_probs=51.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHH----c--C--CceecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFM----L--G--GIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~----~--g--~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      |||+|||+|.||++++..|...|+  +|.+||+++++++.    +.+    .  .  +..+++ .++++++|+||++...
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            599999999999999999999998  99999999988652    111    1  1  223345 7889999999999753

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.73  E-value=8.4e-08  Score=73.11  Aligned_cols=110  Identities=9%  Similarity=-0.035  Sum_probs=76.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CC--c-eecChhhhh-cCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GG--I-RSASPMDAG-KDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--~-~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|+|+|.+|.++++.|.+.|.+|+++||++++.+.+.+. +.  . ...+.+++. ..+|+||.++|.+.. ..+. 
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~~-  197 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIP-  197 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCC-
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCCC-
Confidence            579999999999999999999999999999999988776543 21  1 122333333 489999999986543 2211 


Q ss_pred             Cccch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce-eee
Q 044797           78 GHEGV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF-YIL  119 (173)
Q Consensus        78 ~~~~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~-~v~  119 (173)
                         .+ ...++++.+++|.... |..+. +.+..++.|.. .++
T Consensus       198 ---~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~~~~~  236 (271)
T 1nyt_A          198 ---AIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSKRNAD  236 (271)
T ss_dssp             ---CCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCCEEEC
T ss_pred             ---CCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCCeecC
Confidence               11 1236789999999875 43333 44556677876 443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.73  E-value=4.2e-07  Score=70.77  Aligned_cols=68  Identities=10%  Similarity=0.039  Sum_probs=51.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HHc------CCceecChhhhhcCCCEEEEeccCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FML------GGIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~------g~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      ++||+|||+|.||++++..++..|.  +|.++|+++++.+..    .+.      ..+...+..+++++||+||++.+.+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999988774  899999998766532    111      1222334567789999999997643

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.73  E-value=2.4e-07  Score=72.21  Aligned_cols=133  Identities=11%  Similarity=0.112  Sum_probs=77.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHHc-----CCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFML-----GGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+|||+|.+|.+++..|...+.  +|.++|+++++++.    +.+.     ..+...+..+++++||+||++.+.+..
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~k   87 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   87 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            689999999999999999999887  89999999876542    2111     111222346678999999999875431


Q ss_pred             ---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHH
Q 044797           72 ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLF  136 (173)
Q Consensus        72 ---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~  136 (173)
                                     ++++.   +.+.++ .|+..++.. |..+...-.+.....  +  +-..+++.+++.-+......
T Consensus        88 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~-tNPv~~~~~~~~k~s--~--~p~~rviG~gt~Ld~~r~~~  158 (318)
T 1y6j_A           88 PGETRLDLAKKNVMIAKEVT---QNIMKY-YNHGVILVV-SNPVDIITYMIQKWS--G--LPVGKVIGSGTVLDSIRFRY  158 (318)
T ss_dssp             ---CHHHHHHHHHHHHHHHH---HHHHHH-CCSCEEEEC-SSSHHHHHHHHHHHH--T--CCTTTEEECTTHHHHHHHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEEe-cCcHHHHHHHHHHHc--C--CCHHHEeccCCchHHHHHHH
Confidence                           22332   234455 467777775 445555444444332  2  11223455545444444444


Q ss_pred             HHHHhhCC
Q 044797          137 LVKNEFFI  144 (173)
Q Consensus       137 ~~~~~~g~  144 (173)
                      .+-+.+|.
T Consensus       159 ~la~~lgv  166 (318)
T 1y6j_A          159 LLSEKLGV  166 (318)
T ss_dssp             HHHTTTTC
T ss_pred             HHHHHhCC
Confidence            44455553

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.72  E-value=7.9e-08  Score=74.50  Aligned_cols=91  Identities=12%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHH---HHHHc---CCceecChhhhhcCCCEEEEeccCh----
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVD---KFFML---GGIRSASPMDAGKDVSALVVVISHV----   69 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~---~~~~~---g~~~~~~~~~~~~~~dvii~~v~~~----   69 (173)
                      ++||+|||+|.||..++..++..|+  +|.++|++++...   .+...   .+..+.++ +.+++||+||++...+    
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3689999999999999999999998  9999999985221   12221   23445566 7789999999996211    


Q ss_pred             ----------hhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           70 ----------DQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        70 ----------~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                                ..+++++   +++.++. |+.+++..|+
T Consensus        93 tR~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALV---PALGHYS-QHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHHHT-TTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEcCC
Confidence                      1233343   3455555 6777766655

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.71  E-value=1.7e-08  Score=77.00  Aligned_cols=112  Identities=7%  Similarity=-0.108  Sum_probs=74.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CC--c-eecChhhhhc-CCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GG--I-RSASPMDAGK-DVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--~-~~~~~~~~~~-~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|+|+|.||.+++..|.+.|.+|+++||++++.+.+.+. +.  . ...+.+++.+ ++|+||.++|.+.. ..+. 
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~-~~~~-  197 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGTA-  197 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---------
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC-CCCC-
Confidence            589999999999999999999999999999999988877643 11  1 1223334334 89999999996543 1211 


Q ss_pred             Cccch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce-eeec
Q 044797           78 GHEGV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF-YILE  120 (173)
Q Consensus        78 ~~~~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~-~v~~  120 (173)
                         .+ ...++++.+++|.+......+. +.+..++.|.. +++.
T Consensus       198 ---~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~G  238 (272)
T 1p77_A          198 ---SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSDG  238 (272)
T ss_dssp             ---CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEECS
T ss_pred             ---CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeCC
Confidence               01 1224578899999885433143 44556678887 6654

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.70  E-value=4.3e-08  Score=76.74  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             CeEEEEeCChhhH-HHHHHHHHC-CCeE-EEEcCChHHHHHHHHcCCceecChhhhhcC---CCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSV-DMAASLIRS-GYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKD---VSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~-~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~   76 (173)
                      +||||||+|.||. ..+..+.+. +.++ .++|+++++      .|+....+.++++++   .|+|++|+|+..+.+.+.
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~   99 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY   99 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred             ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            5899999999998 788888875 5665 578998754      477788899998764   899999999655544333


Q ss_pred             cCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeee
Q 044797           77 FGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                             ..++.|+.++..-  +.+....+++.+..+++|+.+..
T Consensus       100 -------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v  137 (330)
T 4ew6_A          100 -------KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA  137 (330)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             -------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence                   4566788877653  45677788888888887776543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.70  E-value=3.8e-08  Score=79.78  Aligned_cols=109  Identities=12%  Similarity=0.100  Sum_probs=76.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHc--C----------------------CceecChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFML--G----------------------GIRSASPMDAG   56 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~--g----------------------~~~~~~~~~~~   56 (173)
                      .||||||+|.||..+++.+.+. +.++ .++|+++++.+.+.+.  |                      ...+++.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999888754 4554 5889999998776432  3                      34567888888


Q ss_pred             c--CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcCCcee
Q 044797           57 K--DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        57 ~--~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~g~~~  117 (173)
                      +  +.|+|++++|++..-.+.      ....++.|+.++.... ......+++.+..+++|+.+
T Consensus       104 ~d~dIDaVviaTp~p~~H~e~------a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl  161 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGAET------GIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIY  161 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHHHH------HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             cCCCCCEEEEcCCChHHHHHH------HHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCee
Confidence            7  589999999865322222      2356778999886432 11223467777777777764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.69  E-value=1.5e-07  Score=73.50  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=50.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHH----HHH------cCCcee-cChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDK----FFM------LGGIRS-ASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~------~g~~~~-~~~~~~~~~~dvii~~v~   67 (173)
                      ++||+|||+|.||++++..|+..|. +|.++|+++++.+.    +.+      ...... ++..+++++||+||++..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence            3799999999999999999999888 99999999887642    221      122222 233578899999999974

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.68  E-value=7.8e-08  Score=73.41  Aligned_cols=113  Identities=8%  Similarity=-0.109  Sum_probs=77.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CC--ceecChhhhh-cCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GG--IRSASPMDAG-KDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~--~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~   77 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+.+. +.  ....+.+++. .++|+||.++|....-.....
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i  200 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPL  200 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCC
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCC
Confidence            578999999999999999999996 999999999998887654 21  1122334433 689999999985432111110


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce-eeece
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF-YILER  121 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~-~v~~~  121 (173)
                          -.+.++++.+++|.... |..+. +.+..+++|.. .++.-
T Consensus       201 ----~~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~Gl  239 (272)
T 3pwz_A          201 ----PADVLGEAALAYELAYG-KGLTP-FLRLAREQGQARLADGV  239 (272)
T ss_dssp             ----CGGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCCEEECTH
T ss_pred             ----CHHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCCEEECCH
Confidence                11346789999999765 43333 44555667876 55443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.68  E-value=6.8e-08  Score=79.06  Aligned_cols=111  Identities=12%  Similarity=0.064  Sum_probs=79.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHc-CCce--e-----cChhhhhcCCCEEEEeccChhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFML-GGIR--S-----ASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~~~--~-----~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      +++|.|+|+|.+|.+++..|.+. |++|++++|++++.+.+.+. ++..  .     ++..++++++|+||.|+|.... 
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~-  101 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH-  101 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH-
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh-
Confidence            36899999999999999999988 78999999999998887653 3321  1     1334567789999999984322 


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      ..+.      ...+.++..+++.+...|.. ..+.+..++.|+.++..
T Consensus       102 ~~v~------~a~l~~g~~vvd~~~~~p~~-~~Ll~~Ak~aGv~~i~g  142 (467)
T 2axq_A          102 PNVV------KSAIRTKTDVVTSSYISPAL-RELEPEIVKAGITVMNE  142 (467)
T ss_dssp             HHHH------HHHHHHTCEEEECSCCCHHH-HHHHHHHHHHTCEEECS
T ss_pred             HHHH------HHHHhcCCEEEEeecCCHHH-HHHHHHHHHcCCEEEec
Confidence            2222      12345678899987656653 55666666777765543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.64  E-value=1e-07  Score=77.73  Aligned_cols=110  Identities=13%  Similarity=0.052  Sum_probs=77.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-C-Cce----ec---ChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-G-GIR----SA---SPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g-~~~----~~---~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      ++|.|+|+|.+|.++++.|++.|++|+++||++++.+.+.+. + ...    ..   +..++++++|+|+.++|...+. 
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~-   82 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA-   82 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch-
Confidence            579999999999999999999999999999999988776542 1 111    11   2346677899999999853322 


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      .+.      ...+.+|+.+++.+...+. ...+.+..++.|+.++..
T Consensus        83 ~i~------~a~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~g  122 (450)
T 1ff9_A           83 TVI------KSAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMNE  122 (450)
T ss_dssp             HHH------HHHHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEECS
T ss_pred             HHH------HHHHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEeC
Confidence            222      1234557888888765665 456777777788876544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.62  E-value=1.1e-07  Score=75.28  Aligned_cols=94  Identities=19%  Similarity=0.164  Sum_probs=68.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce---e----cChhhhhcCCCEEEEeccChhh-hhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR---S----ASPMDAGKDVSALVVVISHVDQ-IDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~---~----~~~~~~~~~~dvii~~v~~~~~-~~~   74 (173)
                      .+|.|+|+|.+|..+++.+...|.+|+++||++++.+.+.+.+...   .    .+..+.+.++|+||.+++.+.. ...
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~  247 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI  247 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCe
Confidence            5899999999999999999999999999999999988876653221   1    1234556789999999975431 111


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ++.  ++..+.++++.+++|.+..
T Consensus       248 li~--~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          248 LVP--ASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CBC--HHHHTTSCTTCEEEETTCT
T ss_pred             ecC--HHHHhhCCCCCEEEEEecC
Confidence            111  2234668899999999753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.62  E-value=2.9e-07  Score=71.64  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHH------cCCcee-cChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFM------LGGIRS-ASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~------~g~~~~-~~~~~~~~~~dvii~~v~~~   69 (173)
                      |||+|||+|.||++++..|+..|.  ++.++|+++++++.    +.+      ...... .+..+.+++||+||++.+.+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            599999999999999999998886  89999999987642    221      123332 35567899999999997543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.62  E-value=3e-07  Score=71.82  Aligned_cols=64  Identities=13%  Similarity=0.113  Sum_probs=50.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHH----HHH------cCCc--eecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDK----FFM------LGGI--RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~------~g~~--~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|.||.+++..|+..|+ +|.+||+++++++.    +.+      ....  .+.+. +++++||+||++..
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag   84 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG   84 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence            699999999999999999999998 99999999887642    211      1222  23455 78999999999974

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.61  E-value=1.5e-07  Score=75.73  Aligned_cols=69  Identities=20%  Similarity=0.138  Sum_probs=56.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH-HcCCce--ecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF-MLGGIR--SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~-~~g~~~--~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      ++|+|+|+|.||..+++.+...|. +|+++||++++.+.+. +.|...  ..+..+.+.++|+||.|++.+..
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~  240 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHP  240 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCc
Confidence            589999999999999999999998 8999999999875544 346543  23566777899999999986543

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.60  E-value=2.4e-07  Score=75.77  Aligned_cols=67  Identities=13%  Similarity=0.075  Sum_probs=51.7

Q ss_pred             CeEEEEeCChh-hHHHHHHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEY-SVDMAASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~m-G~~ia~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~   64 (173)
                      +||+|||+|.+ +.+++..|+..     +.+|.+||+++++++...+        .+    +..+++..+++++||+||+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVi  108 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA  108 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEE
Confidence            49999999998 66688888877     6789999999988655321        11    2345677788999999999


Q ss_pred             eccCh
Q 044797           65 VISHV   69 (173)
Q Consensus        65 ~v~~~   69 (173)
                      ++|.+
T Consensus       109 aag~~  113 (472)
T 1u8x_X          109 HIRVG  113 (472)
T ss_dssp             CCCTT
T ss_pred             cCCCc
Confidence            99853

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.59  E-value=3.2e-07  Score=73.96  Aligned_cols=107  Identities=13%  Similarity=0.068  Sum_probs=72.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cCh---hhh-hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASP---MDA-GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~---~~~-~~~~dvii~~v~~~~~~~~   74 (173)
                      ++|.|+|+|++|..+++.|.+.|++|+++|+++++++.+.+.|..+.    ++.   .++ ++++|+||++++++.....
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~   84 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQ   84 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHH
Confidence            57999999999999999999999999999999999999888775432    122   222 5689999999997654444


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ++    .....+.+...|+.... .+...    ..+...|+..+
T Consensus        85 i~----~~ar~~~p~~~Iiara~-~~~~~----~~L~~~Gad~V  119 (413)
T 3l9w_A           85 LT----EMVKEHFPHLQIIARAR-DVDHY----IRLRQAGVEKP  119 (413)
T ss_dssp             HH----HHHHHHCTTCEEEEEES-SHHHH----HHHHHTTCSSC
T ss_pred             HH----HHHHHhCCCCeEEEEEC-CHHHH----HHHHHCCCCEE
Confidence            43    13333445534433322 23332    33444566544

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.59  E-value=1.3e-07  Score=74.00  Aligned_cols=67  Identities=15%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHHc------CCceecChhhhhcCCCEEEEeccC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFML------GGIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~------g~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      .+||+|||+|.||++++..|+..|+  ++.++|+++++++.    +.+.      ++....+..+++++||+||++...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            3699999999999999999999886  89999999988765    3321      223333445678999999999753

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.59  E-value=8.9e-08  Score=73.80  Aligned_cols=105  Identities=14%  Similarity=-0.017  Sum_probs=75.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHH----CCCeEE-EEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR----SGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~----~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v   75 (173)
                      +||||||+|.||...++.+.+    .+.++. ++|+++..    ...|+. ..+.+++++  +.|+|++|+|+..+.+.+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~   82 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI   82 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHH
Confidence            589999999999999998865    345654 77876421    122444 468889886  689999999976665444


Q ss_pred             hcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeee
Q 044797           76 FFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      .       ..++.|+.++..  .+.++...+++.+..+++|+.+..
T Consensus        83 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~  121 (294)
T 1lc0_A           83 R-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHE  121 (294)
T ss_dssp             H-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            3       445678866544  355788889999988888876543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.59  E-value=1.4e-07  Score=72.58  Aligned_cols=107  Identities=17%  Similarity=0.076  Sum_probs=72.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      +||+|+|+ |+||..+++++.+.|+++ ++..+|.+... ...|+....+.+++.+  ++|++++++|.. ...+++   
T Consensus         8 ~rVaViG~sG~~G~~~~~~l~~~g~~~-V~~V~p~~~g~-~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~---   81 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQAIAYGTKM-VGGVTPGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI---   81 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH---
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCeE-EEEeCCCcccc-eeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH---
Confidence            68999999 999999999999889884 34444432100 1247777888999887  899999999954 445554   


Q ss_pred             cchhhcCCCCC-EEEEcCC-CCHHHHHHHHHHHhcCCceee
Q 044797           80 EGVLKGLQKGA-VIILQST-ILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        80 ~~i~~~l~~g~-~ii~~st-~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      .+..   ..|. .++..++ .+.+..+++.+..+++|++++
T Consensus        82 ~ea~---~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li  119 (288)
T 2nu8_A           82 LEAI---DAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  119 (288)
T ss_dssp             HHHH---HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            1222   2332 3344444 345556688888888888665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.58  E-value=6.2e-07  Score=62.26  Aligned_cols=68  Identities=9%  Similarity=0.002  Sum_probs=51.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC-hHHHHHHHH---cCCcee----c---Chhhh-hcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKFFM---LGGIRS----A---SPMDA-GKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~---~g~~~~----~---~~~~~-~~~~dvii~~v~~~~   70 (173)
                      ++|.|+|+|.+|..+++.|.+.|++|+++|++ +++.+.+.+   .|....    .   .+.++ ++++|.|+++++++.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChH
Confidence            57999999999999999999999999999998 465554432   243321    1   12233 678999999999654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.58  E-value=2.6e-06  Score=66.64  Aligned_cols=134  Identities=11%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHH-c--------CCceecChhhhhcCCCEEEEeccChh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFM-L--------GGIRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~-~--------g~~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      .+||+|||+|.+|.+++..|...+.  ++.++|+++++++.... .        ......+..+++++||+||++.+.+.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3699999999999999999988775  89999999887754211 1        22233455777999999999986432


Q ss_pred             h---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797           71 Q---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYL  135 (173)
Q Consensus        71 ~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~  135 (173)
                      .               ++++.   +.+.++ .|+..++..|+ .....-.......  +  +-..+++.+++.-+.....
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tN-Pv~~~t~~~~k~s--~--~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIV---DPIVDS-GFNGIFLVAAN-PVDILTYATWKLS--G--FPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHH---HHHHHH-TCCSEEEECSS-SHHHHHHHHHHHH--C--CCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEeCC-cHHHHHHHHHHHc--C--CCHHHEEEccccchHHHHH
Confidence            1               12222   234444 46667766643 3333333333322  1  2223455555544444444


Q ss_pred             HHHHHhhCC
Q 044797          136 FLVKNEFFI  144 (173)
Q Consensus       136 ~~~~~~~g~  144 (173)
                      ..+-+.+|.
T Consensus       160 ~~la~~lgv  168 (326)
T 2zqz_A          160 QSIAEMVNV  168 (326)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhCC
Confidence            444455654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.58  E-value=2.6e-06  Score=66.37  Aligned_cols=133  Identities=13%  Similarity=0.125  Sum_probs=79.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HHc-----CCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FML-----GGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+|||+|.+|.+++..|...+.  ++.++|+++++++..    .+.     ..+...+..+++++||+||++.+.+..
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            699999999999999999988775  899999998887642    111     223334556779999999999864421


Q ss_pred             ---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHH
Q 044797           72 ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLF  136 (173)
Q Consensus        72 ---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~  136 (173)
                                     ++++.   +.+.++ .|+..++..|+ .....-.......  +  +-..+++.+++.-+......
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tN-Pv~~~t~~~~k~s--~--~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIV---KPVVDS-GFDGIFLVAAN-PVDILTYATWKFS--G--FPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             -------CHHHHHHHHHHHH---HHHHHT-TCCSEEEECSS-SHHHHHHHHHHHH--C--CCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEeCC-cHHHHHHHHHHHc--C--CCHHHEEeccccchHHHHHH
Confidence                           12222   234444 46677776643 3333333333322  1  22234555555444444444


Q ss_pred             HHHHhhCC
Q 044797          137 LVKNEFFI  144 (173)
Q Consensus       137 ~~~~~~g~  144 (173)
                      .+-+.+|.
T Consensus       157 ~la~~lgv  164 (318)
T 1ez4_A          157 ALGKQFNV  164 (318)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhCc
Confidence            44455654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.58  E-value=2e-06  Score=66.92  Aligned_cols=133  Identities=15%  Similarity=0.122  Sum_probs=76.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC--hHHHHHH----HH------cCCcee-cChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS--DPLVDKF----FM------LGGIRS-ASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~--~~~~~~~----~~------~g~~~~-~~~~~~~~~~dvii~~v~~   68 (173)
                      +||+|||+|.||++++..++..|+ +|.++|++  +++.+..    .+      ...+.. .+..+.+++||+||++...
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaag~   88 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGI   88 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeCCC
Confidence            589999999999999999999999 99999999  4444321    11      112222 2235678999999999743


Q ss_pred             hh---------------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHH
Q 044797           69 VD---------------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFT  133 (173)
Q Consensus        69 ~~---------------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~  133 (173)
                      ++               .++++.   +.+.++ .|+..++..++ .....-.+....  .|  +-..+++.+++.-+...
T Consensus        89 p~kpg~~R~dl~~~N~~i~~~i~---~~i~~~-~p~a~vlvvsN-Pvd~~t~~~~k~--sg--~p~~rviG~gt~LD~~R  159 (315)
T 3tl2_A           89 ARKPGMSRDDLVATNSKIMKSIT---RDIAKH-SPNAIIVVLTN-PVDAMTYSVFKE--AG--FPKERVIGQSGVLDTAR  159 (315)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECCS-SHHHHHHHHHHH--HC--CCGGGEEECCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEECCC-hHHHHHHHHHHh--cC--CChHHEEeeccCcHHHH
Confidence            21               112222   234444 36667777664 222222222222  23  22234666655544444


Q ss_pred             HHHHHHHhhCC
Q 044797          134 YLFLVKNEFFI  144 (173)
Q Consensus       134 ~~~~~~~~~g~  144 (173)
                      ....+-+.+|.
T Consensus       160 ~~~~la~~lgv  170 (315)
T 3tl2_A          160 FRTFIAQELNL  170 (315)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhCc
Confidence            44444455664

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=98.57  E-value=1.6e-07  Score=73.64  Aligned_cols=89  Identities=16%  Similarity=0.053  Sum_probs=62.5

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-CeE-EEEcCChHHHHHHHH-cCC------------------ceecChhhhhcCC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-YKV-QAFEISDPLVDKFFM-LGG------------------IRSASPMDAGKDV   59 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-~~V-~~~d~~~~~~~~~~~-~g~------------------~~~~~~~~~~~~~   59 (173)
                      ||.||||+|+|.||..+++.|.++. .++ .++|+++++...+.+ .|+                  ....++++++.++
T Consensus         1 M~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             CCcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCC
Confidence            7789999999999999999998764 565 467888777655443 232                  2335677877899


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      |+|+.|+|...+.+...       .+++.|+.++...
T Consensus        81 DvV~~aTp~~~h~~~a~-------~~l~aGk~Vi~sa  110 (334)
T 2czc_A           81 DIIVDATPGGIGAKNKP-------LYEKAGVKAIFQG  110 (334)
T ss_dssp             SEEEECCSTTHHHHHHH-------HHHHHTCEEEECT
T ss_pred             CEEEECCCccccHHHHH-------HHHHcCCceEeec
Confidence            99999999655443332       3445566676543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.57  E-value=1.5e-07  Score=70.81  Aligned_cols=99  Identities=14%  Similarity=0.193  Sum_probs=74.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeE-EEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |||+++|+|+||..+++.  . ++++ .+|+   ++...   .|+..+++.+++++++|+|+.|.+ ..++++..     
T Consensus        13 ~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~ge---lgv~a~~d~d~lla~pD~VVe~A~-~~av~e~~-----   77 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKD---IPGVVRLDEFQVPSDVSTVVECAS-PEAVKEYS-----   77 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCC---CSSSEECSSCCCCTTCCEEEECSC-HHHHHHHH-----
T ss_pred             ceEEEECcCHHHHHHHhc--C-CcEEEEEEe---ccccc---cCceeeCCHHHHhhCCCEEEECCC-HHHHHHHH-----
Confidence            799999999999999998  4 7776 5777   33322   277778889998889999999987 55666543     


Q ss_pred             hhhcCCCCCEEEEcCCC---CHHHHHHHHHHHhcCCcee
Q 044797           82 VLKGLQKGAVIILQSTI---LPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~---~~~~~~~l~~~l~~~g~~~  117 (173)
                       .+.|+.|+-++.+|.+   +++..+++.+..++.|.++
T Consensus        78 -~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l  115 (253)
T 1j5p_A           78 -LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV  115 (253)
T ss_dssp             -HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred             -HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence             3567889888888764   4555677777777766654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.57  E-value=8.9e-07  Score=69.23  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HHc-------CCceecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FML-------GGIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~-------g~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      +||+|||+|.||+.++..++..|.  +|.++|+++++++..    .+.       .+..+.++++ +++||+||++...+
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p  100 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGAR  100 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCC
Confidence            699999999999999999999886  899999998876542    111       1223456655 89999999986432


Q ss_pred             h---------------hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           70 D---------------QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        70 ~---------------~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +               .++++.   +.+.++ .|+..++..++
T Consensus       101 ~kpG~tR~dll~~N~~I~k~i~---~~I~k~-~P~a~ilvvtN  139 (330)
T 3ldh_A          101 QQEGESRLNLVQRNVNIFKFII---PNIVKH-SPDCLKELHPE  139 (330)
T ss_dssp             CCSSCCTTGGGHHHHHHHHHHH---HHHHHH-CTTCEEEECSS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHH---HHHHhh-CCCceEEeCCC
Confidence            1               122222   245555 56777777664

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.55  E-value=1.9e-07  Score=71.64  Aligned_cols=114  Identities=13%  Similarity=-0.019  Sum_probs=76.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc------CC--ceec--ChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML------GG--IRSA--SPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~------g~--~~~~--~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|+++||++++.+.+.+.      +.  ...+  +..+.++++|+||.++|..-.
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~  207 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP  207 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTST
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCC
Confidence            578999999999999999999998 799999999988776442      11  1222  566777889999999984321


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      -..-.   .--...++++.++.|..-. |..+. +.+..+++|.+.++.-
T Consensus       208 ~~~~~---pi~~~~l~~~~~v~DlvY~-P~~T~-ll~~A~~~G~~~~~Gl  252 (283)
T 3jyo_A          208 AHPGT---AFDVSCLTKDHWVGDVVYM-PIETE-LLKAARALGCETLDGT  252 (283)
T ss_dssp             TSCSC---SSCGGGCCTTCEEEECCCS-SSSCH-HHHHHHHHTCCEECTH
T ss_pred             CCCCC---CCCHHHhCCCCEEEEecCC-CCCCH-HHHHHHHCcCeEeCcH
Confidence            11000   0012357788999998664 33332 3344455677665544

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.54  E-value=3.1e-07  Score=74.54  Aligned_cols=108  Identities=13%  Similarity=0.146  Sum_probs=75.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHH----------CCCeE-EEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccC-
Q 044797            3 SKVGFVGLDEYSVDMAASLIR----------SGYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISH-   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~----------~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~-   68 (173)
                      .|||++|+|.+|+.+++.|.+          .+.++ .++|+++++.+.+. .+....++++++++  +.|+|+.++|+ 
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            389999999999999887754          23444 58899998877663 35567788999886  57999999985 


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhcCCceee
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ..+.+.+       ...++.|+.++..... .....+++.+..+++|+.+.
T Consensus        90 ~~h~~~~-------~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~  133 (444)
T 3mtj_A           90 EPARELV-------MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVT  133 (444)
T ss_dssp             TTHHHHH-------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hHHHHHH-------HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEE
Confidence            3333322       3567789999876431 12234667777777777663

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.53  E-value=4.2e-07  Score=69.74  Aligned_cols=104  Identities=12%  Similarity=0.073  Sum_probs=70.3

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHC-CCeE-EEEcCChHH-H----HHHH---HcCCceecChhhhhcCCCEEEEeccChh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRS-GYKV-QAFEISDPL-V----DKFF---MLGGIRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~-~----~~~~---~~g~~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      ++||+++| +|+||+.+++.+.+. ++++ -++|++++. .    ..+.   ..|+..+++++++++++|++|-+++ |.
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p~   99 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-PQ   99 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-HH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-HH
Confidence            36899999 999999999998754 5675 467887532 1    1111   2367788899999999999998876 44


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhc
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTG  112 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~  112 (173)
                      .+.+.+      ...++.|..++..+|+ +++..+++.+..++
T Consensus       100 a~~~~~------~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~  136 (288)
T 3ijp_A          100 ASVLYA------NYAAQKSLIHIIGTTGFSKTEEAQIADFAKY  136 (288)
T ss_dssp             HHHHHH------HHHHHHTCEEEECCCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHH------HHHHHcCCCEEEECCCCCHHHHHHHHHHhCc
Confidence            443333      2345567777776665 44455566666543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.52  E-value=7e-07  Score=73.02  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++.|+|+|.+|.++|+.|+..|.+|.++|+++.+.......+... .+.+++.+.+|+++.+......+..      +.
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~------e~  338 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIML------DH  338 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCH------HH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhH------HH
Confidence            5789999999999999999999999999999998887777777654 4678888999999988753332221      23


Q ss_pred             hhcCCCCCEEEEcCCC
Q 044797           83 LKGLQKGAVIILQSTI   98 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~   98 (173)
                      .+.++++.++++.+..
T Consensus       339 l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          339 MKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             HTTSCTTEEEEESSST
T ss_pred             HHhcCCCeEEEEcCCC
Confidence            4678899999999865

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.51  E-value=2.6e-06  Score=66.13  Aligned_cols=133  Identities=16%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHH-HHc--------CCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKF-FML--------GGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~-~~~--------g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |||+|||+|.+|.+++..|...+  .++.++|+++++++.. .+.        ..+...+..+++++||+||++.+.+..
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            59999999999999999998887  5899999998877642 111        123333446779999999998764321


Q ss_pred             ---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHH
Q 044797           72 ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLF  136 (173)
Q Consensus        72 ---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~  136 (173)
                                     ++++.   +.+.++ .|+..++..|+ .....-.+.....  +  +-..+++.+++.-+......
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tN-Pv~~~t~~~~k~s--~--~p~~rviG~gt~LD~~R~~~  151 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVV---PRVLEA-APEAVLLVATN-PVDVMTQVAYALS--G--LPPGRVVGSGTILDTARFRA  151 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECSS-SHHHHHHHHHHHH--T--CCGGGEEECTTHHHHHHHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHH---HHHHHH-CCCcEEEEecC-chHHHHHHHHHHc--C--CCHHHEEecCcchhHHHHHH
Confidence                           12222   234444 46666766643 3333333333322  2  22234555555444444444


Q ss_pred             HHHHhhCC
Q 044797          137 LVKNEFFI  144 (173)
Q Consensus       137 ~~~~~~g~  144 (173)
                      .+-+.+|.
T Consensus       152 ~la~~lgv  159 (310)
T 2xxj_A          152 LLAEYLRV  159 (310)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHhCc
Confidence            44455553

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.50  E-value=9.2e-08  Score=76.93  Aligned_cols=111  Identities=7%  Similarity=-0.043  Sum_probs=73.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC---CeEEEEcCChHHHHHHHHc-------CCce-------ecChhhhhcC--CCEE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG---YKVQAFEISDPLVDKFFML-------GGIR-------SASPMDAGKD--VSAL   62 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~--~dvi   62 (173)
                      |+||.|+|+|.+|..+++.|.+.|   .+|.+++|++++.+++.+.       .+..       .++.++++++  +|+|
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV   80 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV   80 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence            468999999999999999999998   3899999999998776542       1221       1234455666  8999


Q ss_pred             EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHH--------HHHHHHHHHhcCCceeee
Q 044797           63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPS--------HMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~--------~~~~l~~~l~~~g~~~v~  119 (173)
                      |.+++...+ ..+.      ...+..|..++|++...+.        ...++.+.+++.|+..+.
T Consensus        81 in~ag~~~~-~~v~------~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~  138 (405)
T 4ina_A           81 LNIALPYQD-LTIM------EACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL  138 (405)
T ss_dssp             EECSCGGGH-HHHH------HHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred             EECCCcccC-hHHH------HHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence            999984332 2332      2334567788887543221        123556666666765544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.49  E-value=1.5e-07  Score=76.53  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=52.6

Q ss_pred             CeEEEEeCChh--hHHHHHHHHH----CCCeEEEEcCChHHHHHHHHc---------CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEY--SVDMAASLIR----SGYKVQAFEISDPLVDKFFML---------GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~m--G~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~---------g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||.|.|  |..+++.|+.    .| +|++||++++++++....         .+..+++.++++++||+||++++
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~air   84 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISIL   84 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccc
Confidence            59999999997  5789988876    56 999999999887654331         24467788899999999999996

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=98.48  E-value=1.4e-07  Score=72.31  Aligned_cols=111  Identities=5%  Similarity=-0.170  Sum_probs=75.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhh--hhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQ--IDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~--~~~v~~~   78 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|++++|++++.+.+.+. .....++..+ + ++|+||.++|..-.  ...... 
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi-  199 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPV-  199 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSS-
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCC-
Confidence            579999999999999999999998 899999999998887653 1111222333 4 89999999984311  110100 


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                         -...++++.+++|..-. |..+ .+.+..++.|...++.-
T Consensus       200 ---~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~~~Gl  237 (282)
T 3fbt_A          200 ---DKEVVAKFSSAVDLIYN-PVET-LFLKYARESGVKAVNGL  237 (282)
T ss_dssp             ---CHHHHTTCSEEEESCCS-SSSC-HHHHHHHHTTCEEECSH
T ss_pred             ---CHHHcCCCCEEEEEeeC-CCCC-HHHHHHHHCcCeEeCcH
Confidence               12345788999998654 3332 34455566788766543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.46  E-value=4.6e-07  Score=69.09  Aligned_cols=104  Identities=9%  Similarity=0.061  Sum_probs=69.7

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHC-CCeEE-EEcCChHHH-----HHHH--HcCCceecChhhhhcCCCEEEEeccChhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRS-GYKVQ-AFEISDPLV-----DKFF--MLGGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~-----~~~~--~~g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      |+||+|+| +|+||+.+++.+.+. ++++. ++|++++..     ..+.  ..++...++++++++++|+||-+++ |..
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p~a   85 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-PEG   85 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-HHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-HHH
Confidence            47999999 899999999998865 56765 578875321     1111  1156677889998889999999987 554


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhc
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTG  112 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~  112 (173)
                      ..+.+      ...++.|..++..+|+ ++...+++.+..++
T Consensus        86 ~~~~~------~~al~~G~~vVigTTG~s~~~~~~L~~aa~~  121 (272)
T 4f3y_A           86 TLVHL------DAALRHDVKLVIGTTGFSEPQKAQLRAAGEK  121 (272)
T ss_dssp             HHHHH------HHHHHHTCEEEECCCCCCHHHHHHHHHHTTT
T ss_pred             HHHHH------HHHHHcCCCEEEECCCCCHHHHHHHHHHhcc
Confidence            44443      2335567777766654 44445566665543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.45  E-value=1.8e-06  Score=67.89  Aligned_cols=66  Identities=12%  Similarity=0.002  Sum_probs=52.9

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHH----HHHc-----CCceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDK----FFML-----GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~~-----g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ++||+|||+ |.+|++++..+...|  .+|.++|+++++++.    +.+.     .+..+.+..+++++||+||++..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            479999997 999999999999888  489999999887654    3321     23445677788999999999863

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.44  E-value=4.8e-06  Score=64.59  Aligned_cols=131  Identities=14%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHH----HH------cCC--ceecChhhhhcCCCEEEEeccChh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKF----FM------LGG--IRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~----~~------~g~--~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      ||+|||+|.||++++..++..++ +|.++|+++++++..    .+      ...  ..+.+. +++++||+||++.+.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            79999999999999999988887 799999998776531    11      122  223455 67899999999965332


Q ss_pred             ---------------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797           71 ---------------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYL  135 (173)
Q Consensus        71 ---------------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~  135 (173)
                                     .++++.   +.+.++. |+..++..|+ .....-.......  +  +-..+++.+|+.-+.....
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~tN-Pv~~~t~~~~k~~--~--~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLA---EKIKAYA-KDAIVVITTN-PVDAMTYVMYKKT--G--FPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECCS-SHHHHHHHHHHHH--C--CCGGGEEECCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEeCC-chHHHHHHHHHhc--C--CChhhEEEecccchHHHHH
Confidence                           133333   3455554 6666666644 3333333333322  2  2233466665554444444


Q ss_pred             HHHHHhhCC
Q 044797          136 FLVKNEFFI  144 (173)
Q Consensus       136 ~~~~~~~g~  144 (173)
                      ..+-+.+|.
T Consensus       151 ~~la~~lgv  159 (308)
T 2d4a_B          151 YYISQKLGV  159 (308)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHhCc
Confidence            444455553

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.44  E-value=1.8e-06  Score=68.15  Aligned_cols=159  Identities=11%  Similarity=0.029  Sum_probs=97.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc-CCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK-DVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++++|+|+|++|...++.+...|.+|.++|+++++.+...+.+++.. +.++++. +||+++.|-     ....+.  .+
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A-----~~~~I~--~~  247 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-----MGGVIT--TE  247 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-----CSCCBC--HH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhH-----HHhhcC--HH
Confidence            58999999999999999999999999999999876333344566554 4567666 899998553     222321  11


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------e--ee----eecC-HhhHHHHHHHHHhhCCc---
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------M--FL----ISSS-IDCFTYLFLVKNEFFID---  145 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------~--~~----~~g~-~~~~~~~~~~~~~~g~~---  145 (173)
                      -.+.++ .++|++.++. |.+..+..+.|.+.|+.++.+.      +  ..    ++-+ +++.++++.+.+.+..+   
T Consensus       248 ~~~~lk-~~iVie~AN~-p~t~~eA~~~L~~~gIlv~Pd~~aNaGGV~~s~~~E~~~w~~e~v~~~l~~i~~~~~~i~~~  325 (355)
T 1c1d_A          248 VARTLD-CSVVAGAANN-VIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLGWSESVVHERAVAIGDTLNQVFEI  325 (355)
T ss_dssp             HHHHCC-CSEECCSCTT-CBCSHHHHHHHHHTTCEECCHHHHTTHHHHHHHHHHTTCCCHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHhhCC-CCEEEECCCC-CCCCHHHHHHHHhCCEEEECCeEEcCCCeeeeeeehhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            223454 5788877664 3333234678888898886543      1  11    1112 34555566555433221   


Q ss_pred             -eeecCCCchHhHhHHhHhhhHhhhhcC
Q 044797          146 -KKVNISGQEIHWGYLKINYFIRVMTDG  172 (173)
Q Consensus       146 -~~~g~~Gsg~a~~~~~~~~~~~~~~~~  172 (173)
                       ..-+.+-.-.||. ++.+.+.++|++.
T Consensus       326 ~~~~~~~~~~aA~~-~a~~rv~~a~~~~  352 (355)
T 1c1d_A          326 SDNDGVTPDEAART-LAGRRAREASTTT  352 (355)
T ss_dssp             HHHHTCCHHHHHHH-HHHHHHHHTC---
T ss_pred             HHHhCcCHHHHHHH-HHHHHHHHHHhhc
Confidence             1224444455655 5677777877664

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=98.44  E-value=5.6e-07  Score=69.22  Aligned_cols=107  Identities=14%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      +||+|+|+ |+||+.+++++.+.|+++ ++..+|.+... ...|.....+.+++.+  .+|++++++| +..+.+++   
T Consensus         8 ~~VaVvGasG~~G~~~~~~l~~~g~~~-v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp-~~~~~~~~---   81 (288)
T 1oi7_A            8 TRVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVP-APAAADAA---   81 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCC-HHHHHHHH---
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCeE-EEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecC-HHHHHHHH---
Confidence            68999998 999999999999999984 34444332100 1247778888999888  8999999999 55566665   


Q ss_pred             cchhhcCCCC-CEEEEcCCC-CHHHHHHHHHHHhcCCceee
Q 044797           80 EGVLKGLQKG-AVIILQSTI-LPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        80 ~~i~~~l~~g-~~ii~~st~-~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ++..+   .| +.++..+++ .....+++.+..++.+++++
T Consensus        82 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi  119 (288)
T 1oi7_A           82 LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (288)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            23332   22 224444444 44446788888888888765

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.42  E-value=5e-07  Score=74.01  Aligned_cols=67  Identities=18%  Similarity=0.298  Sum_probs=51.3

Q ss_pred             CCeEEEEeCChh--hHHHHHHHHHC----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797            2 ASKVGFVGLDEY--SVDMAASLIRS----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG~G~m--G~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii   63 (173)
                      ++||+|||+|.|  |.+++..|+..    +++|.+||+++++++....        .+    +..+++..+++++||+||
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            479999999997  56667788643    8899999999988765322        11    234567778899999999


Q ss_pred             EeccC
Q 044797           64 VVISH   68 (173)
Q Consensus        64 ~~v~~   68 (173)
                      +++|.
T Consensus        83 iaagv   87 (480)
T 1obb_A           83 NTAMV   87 (480)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99974

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.42  E-value=1.2e-06  Score=71.38  Aligned_cols=68  Identities=10%  Similarity=0.022  Sum_probs=52.0

Q ss_pred             CCeEEEEeCChh-hHHHHHHHHHC-----CCeEEEEcCCh--HHHHHHH--------HcC----CceecChhhhhcCCCE
Q 044797            2 ASKVGFVGLDEY-SVDMAASLIRS-----GYKVQAFEISD--PLVDKFF--------MLG----GIRSASPMDAGKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~G~m-G~~ia~~l~~~-----g~~V~~~d~~~--~~~~~~~--------~~g----~~~~~~~~~~~~~~dv   61 (173)
                      .+||+|||+|.+ |.+++..|+..     +.+|.+||+++  ++++...        ..+    +..+.+..+++++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            369999999999 88888888873     56899999999  8765421        111    2234677788999999


Q ss_pred             EEEeccCh
Q 044797           62 LVVVISHV   69 (173)
Q Consensus        62 ii~~v~~~   69 (173)
                      |+++++.+
T Consensus        87 VVitagv~   94 (450)
T 1s6y_A           87 VTTQFRVG   94 (450)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            99999853

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.42  E-value=7.1e-07  Score=68.49  Aligned_cols=112  Identities=10%  Similarity=-0.086  Sum_probs=75.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CC--------c-eecChhhhhcCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GG--------I-RSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--------~-~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      +++.|+|+|.+|.++++.|.+.| +|+++||++++.+.+.+. +.        . ...+..+.+.++|++|.+++....-
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~  207 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP  207 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCC
Confidence            57899999999999999999999 999999999887766432 10        0 1122345567899999999854321


Q ss_pred             --hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           73 --DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        73 --~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                        +.....   -.+.++++.+++|.+.. |..+ .+.+..++.|..+++.
T Consensus       208 ~~~~~~~~---~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~~G  252 (287)
T 1nvt_A          208 NIDVEPIV---KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTING  252 (287)
T ss_dssp             CCSSCCSS---CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEECT
T ss_pred             CCCCCCCC---CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEeCc
Confidence              111000   12457789999999874 4333 3555666778775543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.40  E-value=9.6e-06  Score=63.48  Aligned_cols=64  Identities=9%  Similarity=0.146  Sum_probs=49.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHHc-----C--CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFML-----G--GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~-----g--~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|.||+.++..|+..|.  ++.++|+++++++.    +.+.     .  +....+++ .+++||+||++..
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG   96 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAG   96 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccC
Confidence            699999999999999999999887  89999999887754    2221     1  11234454 6899999999864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.39  E-value=1.6e-06  Score=67.79  Aligned_cols=114  Identities=16%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC---------CCeE-EEEcCChHHHH-----H-HHH--cCCceec--Chhhhhc--CC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS---------GYKV-QAFEISDPLVD-----K-FFM--LGGIRSA--SPMDAGK--DV   59 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~---------g~~V-~~~d~~~~~~~-----~-~~~--~g~~~~~--~~~~~~~--~~   59 (173)
                      |+||++||+|.||+.+++.+.+.         +.+| .++|+++++.+     . +..  ......+  +.+++++  +.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i   81 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY   81 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence            46999999999999999999865         4555 47788754321     1 111  1123333  7888875  58


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHH--HHHHHHHHHhcCCceeee
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPS--HMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~--~~~~l~~~l~~~g~~~v~  119 (173)
                      |+|+.|+|+..+..+..   +-....++.|+.++..+.. |.  ..+++.+..+++++.+.-
T Consensus        82 DvVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NKk-pla~~~~eL~~~A~~~g~~~~~  139 (327)
T 3do5_A           82 DVLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNKG-PLVAEFHGLMSLAERNGVRLMY  139 (327)
T ss_dssp             SEEEECCCCC----CHH---HHHHHHHTTTCEEEECCSH-HHHHHHHHHHHHHHHTTCCEEC
T ss_pred             CEEEECCCCcccchhHH---HHHHHHHHCCCeEEecCch-hhHHHHHHHHHHHHhhCCcEEE
Confidence            99999999654311111   1234567899999987542 32  356777777788886643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.36  E-value=1.6e-06  Score=64.25  Aligned_cols=88  Identities=13%  Similarity=0.043  Sum_probs=61.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cCh---hhh-hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASP---MDA-GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~---~~~-~~~~dvii~~v~~~~~~~~   74 (173)
                      ++|.|+|+|.+|..+++.|.+.|+ |+++|+++++.+.+. .++...    .+.   .++ ++++|.++++++++.....
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~   87 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH   87 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHH
Confidence            689999999999999999999999 999999999988776 554431    122   223 6789999999997543222


Q ss_pred             hhcCccchhhcCCCC-CEEEEcC
Q 044797           75 IFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        75 v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      +.    .....+.++ .++....
T Consensus        88 ~~----~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           88 CI----LGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             HH----HHHHHHCSSSEEEEECS
T ss_pred             HH----HHHHHHCCCCeEEEEEC
Confidence            22    123334455 4555543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.36  E-value=9.3e-07  Score=67.05  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=52.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cChhhhhcCCCEEEEecc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~~~~~dvii~~v~   67 (173)
                      |||||.|.|+|.+|+.+++.|++.|++|++.+|++++.+.+...+++..    .+++  ++++|+||.+..
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCC
Confidence            7899999999999999999999999999999999998877766554321    1222  678999999875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.35  E-value=1.5e-06  Score=67.93  Aligned_cols=65  Identities=15%  Similarity=0.102  Sum_probs=51.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HHc-----CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FML-----GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~-----g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|.+|++++..|+..|.  ++.++|+++++++..    .+.     ......+..+.+++||+||++..
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG   85 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCC
Confidence            699999999999999999998886  899999999877632    211     23344455677999999999874

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.34  E-value=1.9e-07  Score=72.63  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=63.1

Q ss_pred             CeEEEEeCChh-hHHHHHHHHHCCCeEEEEcCChHHH----HHHHHcCCce-----e--cChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEY-SVDMAASLIRSGYKVQAFEISDPLV----DKFFMLGGIR-----S--ASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~m-G~~ia~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~-----~--~~~~~~~~~~dvii~~v~~~~   70 (173)
                      .++.|||.|.| |..+|+.|...|.+|+++||+..+.    +.+.......     +  .++.+.++++|+||.+++.+.
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~  257 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN  257 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCc
Confidence            57899999986 9999999999999999999984332    1111110111     1  457788999999999998643


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .   ++.     .+.+++|.+++|.+.-
T Consensus       258 ~---vI~-----~e~vk~GavVIDVgi~  277 (320)
T 1edz_A          258 Y---KFP-----TEYIKEGAVCINFACT  277 (320)
T ss_dssp             C---CBC-----TTTSCTTEEEEECSSS
T ss_pred             c---eeC-----HHHcCCCeEEEEcCCC
Confidence            2   231     1346889999999763

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.34  E-value=1.3e-06  Score=67.96  Aligned_cols=117  Identities=7%  Similarity=-0.105  Sum_probs=76.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC---hHHHHHHHHc-----CC--cee--cC---hhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS---DPLVDKFFML-----GG--IRS--AS---PMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~---~~~~~~~~~~-----g~--~~~--~~---~~~~~~~~dvii~~v   66 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|++++|+   .++.+.+.+.     +.  ...  ++   ..+.++++|+||.++
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT  234 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT  234 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence            578899999999999999999998 89999999   8887766532     22  111  12   335567899999999


Q ss_pred             cChhhhh-hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           67 SHVDQID-DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        67 ~~~~~~~-~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                      |-.-.-. ...  +-.....++++.+++|..-. |..+ .+.+..++.|.+.++.--+
T Consensus       235 p~Gm~~~~~~~--p~~~~~~l~~~~~V~DlvY~-P~~T-~ll~~A~~~G~~~~~Gl~M  288 (315)
T 3tnl_A          235 GVGMKPFEGET--LLPSADMLRPELIVSDVVYK-PTKT-RLLEIAEEQGCQTLNGLGM  288 (315)
T ss_dssp             STTSTTSTTCC--SCCCGGGCCTTCEEEESCCS-SSSC-HHHHHHHHTTCEEECSHHH
T ss_pred             cCCCCCCCCCC--CCCcHHHcCCCCEEEEeccC-CCCC-HHHHHHHHCCCeEeCcHHH
Confidence            8432110 000  00012346788999999764 3333 3445556678876655433

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=98.34  E-value=1.2e-06  Score=67.45  Aligned_cols=107  Identities=14%  Similarity=0.059  Sum_probs=74.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      .++.|+|+ |+||+.+++++.+.|++ .++..+|.+... .-.|+....+.+++.+  ++|++++++| +..+.+++   
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~ii~vp-~~~~~~~v---   87 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQ-NVHGVPVFDTVKEAVKETDANASVIFVP-APFAKDAV---   87 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHH---
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCc-eECCEeeeCCHHHHhhcCCCCEEEEccC-HHHHHHHH---
Confidence            46888898 99999999999999998 555555543210 0147778889999888  8999999999 55555565   


Q ss_pred             cchhhcCCCCCE-EEEcCC-CCHHHHHHHHHHHhcCCceee
Q 044797           80 EGVLKGLQKGAV-IILQST-ILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        80 ~~i~~~l~~g~~-ii~~st-~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ++..+   .|.. ++..++ ......+++.+.+++.|++++
T Consensus        88 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  125 (294)
T 2yv1_A           88 FEAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVKII  125 (294)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            22332   2322 444444 344456788888888888765

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=98.33  E-value=1.1e-05  Score=60.47  Aligned_cols=117  Identities=11%  Similarity=0.150  Sum_probs=70.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHcCCceecChhhhhc-CCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGK-DVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~v~~~   78 (173)
                      |||+|+|+ |+||+.+++.+.+. ++++. ++|++               +++++++. ++|++|-+++ |..+.+.+  
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~-p~a~~~~~--   62 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH-PDVVMGNL--   62 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC-TTTHHHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC-hHHHHHHH--
Confidence            48999997 99999999998865 88876 66764               23444443 7899997775 44444443  


Q ss_pred             ccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcC-CceeeeceeeeeecCHhhHHHHHHHHHhh
Q 044797           79 HEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGN-LTFYILERMFLISSSIDCFTYLFLVKNEF  142 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~-g~~~v~~~~~~~~g~~~~~~~~~~~~~~~  142 (173)
                          ...++.|..++..+| .+++..+++.+..++. ++..+-.+.+.++.+ -.++.++..-+.+
T Consensus        63 ----~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~-ll~~l~~~aa~~~  123 (245)
T 1p9l_A           63 ----EFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAV-LSMHFAKQAARFF  123 (245)
T ss_dssp             ----HHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHH-HHHHHHHHHGGGC
T ss_pred             ----HHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHH-HHHHHHHHHHhhc
Confidence                233455666665555 4555566667766644 665554444433332 1233444443334

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=98.33  E-value=1e-06  Score=68.48  Aligned_cols=88  Identities=16%  Similarity=0.083  Sum_probs=60.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHH--CCCeE-EEEcCChHH-HHHH-HHcCCce-ecChhhhhc-----CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR--SGYKV-QAFEISDPL-VDKF-FMLGGIR-SASPMDAGK-----DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~--~g~~V-~~~d~~~~~-~~~~-~~~g~~~-~~~~~~~~~-----~~dvii~~v~~~~~   71 (173)
                      .||+|||+|.+|..+++.+.+  .+.++ .++|+++++ ...+ .+.|... .++.+++++     +.|+|+.|+|...+
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h   84 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHH
Confidence            689999999999999999865  34554 578999877 4443 3456653 344566643     57999999995444


Q ss_pred             hhhhhcCccchhhcCCC--CCEEEEcCC
Q 044797           72 IDDIFFGHEGVLKGLQK--GAVIILQST   97 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~--g~~ii~~st   97 (173)
                      .+.+.       ..++.  |+.+++.+.
T Consensus        85 ~~~a~-------~al~a~~Gk~Vi~ekp  105 (312)
T 1nvm_B           85 VQNEA-------LLRQAKPGIRLIDLTP  105 (312)
T ss_dssp             HHHHH-------HHHHHCTTCEEEECST
T ss_pred             HHHHH-------HHHHhCCCCEEEEcCc
Confidence            33332       23344  888888655

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.33  E-value=4.3e-07  Score=69.33  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHH-CCCeEE-EEcCChHHH--HHH------HHcCCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIR-SGYKVQ-AFEISDPLV--DKF------FMLGGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~-~g~~V~-~~d~~~~~~--~~~------~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+|+|+ |+||..+++.+.+ .++++. ++|+++++.  +.+      ...++...++++++++++|+||-+++ |..
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~-p~~   84 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEG   84 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-hHH
Confidence            68999998 9999999998774 567776 788876431  011      11244556778888889999996665 444


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHh
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFT  111 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~  111 (173)
                      ..+.+      ...++.|..++..++ .+.+..+++.+..+
T Consensus        85 ~~~~~------~~a~~~G~~vVigTtG~~~e~~~~L~~~a~  119 (273)
T 1dih_A           85 TLNHL------AFCRQHGKGMVIGTTGFDEAGKQAIRDAAA  119 (273)
T ss_dssp             HHHHH------HHHHHTTCEEEECCCCCCHHHHHHHHHHTT
T ss_pred             HHHHH------HHHHhCCCCEEEECCCCCHHHHHHHHHhcC
Confidence            44443      234556777776554 44544555555543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.32  E-value=1.9e-06  Score=65.43  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|. +|.++|+.|.+.|.+|++++++              +.++++.++++|+||.+++.+..    +.    
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~----  208 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF----LN----  208 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC----BC----
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc----cc----
Confidence            5789999986 8999999999999999999864              24677889999999999986442    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|++++|.+..
T Consensus       209 -~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          209 -REMVTPGSVVIDVGIN  224 (276)
T ss_dssp             -GGGCCTTCEEEECCCE
T ss_pred             -HhhccCCcEEEEeccC
Confidence             1457999999999764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=98.28  E-value=8.6e-06  Score=63.54  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             CCeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCCh--HHHHHHHHcCCcee--cChhhhh-cCCCEEEEe
Q 044797            2 ASKVGFVGLDEYSVD-MAASLIRSGYKVQAFEISD--PLVDKFFMLGGIRS--ASPMDAG-KDVSALVVV   65 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~--~~~~~~~~~g~~~~--~~~~~~~-~~~dvii~~   65 (173)
                      ++||.|||.|.+|.+ +|+.|.+.|++|+++|+++  +..+.+.+.|+...  .+.+++. .++|+||.+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~S   73 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIG   73 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEEC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEEC
Confidence            478999999999995 9999999999999999864  35567777887654  3444444 479999986

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.26  E-value=2.4e-06  Score=65.68  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|. +|.+++..|.+.|.+|+++++....++            +.+.++++|+||.+++.+..    +.    
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~------------l~~~~~~ADIVI~Avg~p~~----I~----  225 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED------------MIDYLRTADIVIAAMGQPGY----VK----  225 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH------------HHHHHHTCSEEEECSCCTTC----BC----
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch------------hhhhhccCCEEEECCCCCCC----Cc----
Confidence            5789999987 799999999999999999997433211            12778999999999996432    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|+++||.+..
T Consensus       226 -~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          226 -GEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             -GGGSCTTCEEEECCCE
T ss_pred             -HHhcCCCcEEEEEecc
Confidence             1357999999999763

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=98.26  E-value=1.3e-05  Score=62.01  Aligned_cols=109  Identities=10%  Similarity=0.031  Sum_probs=74.9

Q ss_pred             CeEEEE-eC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFV-GL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~Igii-G~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .+++|| |+ |++|+.++++|.+.|++ .+++.+|.+... .-.|.....+.+++.+  .+|++++++| +....+++  
T Consensus        14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~vD~avI~vP-~~~~~~~~--   88 (305)
T 2fp4_A           14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVP-PPFAAAAI--   88 (305)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHH--
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcc-eECCeeeechHHHhhhcCCCCEEEEecC-HHHHHHHH--
Confidence            468888 98 99999999999999999 445555543110 0147777888999888  8999999999 55566666  


Q ss_pred             ccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcC-Cceeee
Q 044797           79 HEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGN-LTFYIL  119 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~-g~~~v~  119 (173)
                       ++..+.- - +.++..+.+. ....+++.+.++++ |++.+.
T Consensus        89 -~e~i~~G-i-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG  128 (305)
T 2fp4_A           89 -NEAIDAE-V-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG  128 (305)
T ss_dssp             -HHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred             -HHHHHCC-C-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence             2333221 1 3444555543 34455888888888 888763

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.26  E-value=3.4e-06  Score=56.65  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||+    ++.|..+.++|.+.|++|+-.|+..+.+     .|.....++.++-+ .|++++++| +..+.+++  
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v--   75 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYIN-PQNQLSEY--   75 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSC-HHHHGGGH--
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeC-HHHHHHHH--
Confidence            57999997    5799999999999999999888765432     36666777888777 999999999 66777777  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                       +++.+.- ...+++..+..    .+++.+.++++|++++.
T Consensus        76 -~e~~~~g-~k~v~~~~G~~----~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           76 -NYILSLK-PKRVIFNPGTE----NEELEEILSENGIEPVI  110 (122)
T ss_dssp             -HHHHHHC-CSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred             -HHHHhcC-CCEEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence             3443322 22455443332    35788888889998874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.25  E-value=6.4e-06  Score=64.01  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHH--HHHHc--C--Cce---ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVD--KFFML--G--GIR---SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~--~~~~~--g--~~~---~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+ |.+|.+++..|+..|  .+|.++|+++.+..  .+.+.  .  +..   +++++++++++|+||++..
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag   77 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCC
Confidence            49999998 999999999999888  78999999873222  12221  1  112   1357778999999999974

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.25  E-value=9.1e-06  Score=63.91  Aligned_cols=91  Identities=15%  Similarity=0.046  Sum_probs=57.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH---------------------cCCceecChhhhhc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM---------------------LGGIRSASPMDAGK   57 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~---------------------~g~~~~~~~~~~~~   57 (173)
                      ||.||||+|+|.+|..+++.|.++ ++++. +.|++++....+.+                     .+.....+..+.+.
T Consensus         1 MmikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~   80 (343)
T 2yyy_A            1 MPAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE   80 (343)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG
T ss_pred             CceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc
Confidence            778999999999999999999876 46765 44555444332222                     22222223445556


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++|+|+.|+|..... +..   +  ..+++.|+.+++++.
T Consensus        81 ~vDiV~eatg~~~s~-~~a---~--~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           81 DADIVVDGAPKKIGK-QNL---E--NIYKPHKVKAILQGG  114 (343)
T ss_dssp             GCSEEEECCCTTHHH-HHH---H--HTTTTTTCEEEECTT
T ss_pred             CCCEEEECCCccccH-HHH---H--HHHHHCCCEEEECCC
Confidence            899999999854322 222   1  256777888887544

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.25  E-value=2.9e-06  Score=66.33  Aligned_cols=66  Identities=9%  Similarity=0.082  Sum_probs=49.6

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCC--CeEEEEcCChHHHH--HHHHcCC--c--e---ecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSG--YKVQAFEISDPLVD--KFFMLGG--I--R---SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~--~~~~~g~--~--~---~~~~~~~~~~~dvii~~v~   67 (173)
                      +|||+|+| .|.+|.+++..|...|  .+|.++|++++...  .+.+...  .  .   ++++.++++++|+||++.+
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            47999999 8999999999999988  79999998876221  2332211  1  1   2245678999999999975

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.24  E-value=3.5e-06  Score=65.43  Aligned_cols=118  Identities=13%  Similarity=0.011  Sum_probs=76.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC---hHHHHHHHHc-----CCc--ee--cCh---hhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS---DPLVDKFFML-----GGI--RS--ASP---MDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~---~~~~~~~~~~-----g~~--~~--~~~---~~~~~~~dvii~~v   66 (173)
                      +++.|+|+|.+|.+++..|.+.|. +|++++|+   .++.+++.+.     +..  ..  .+.   .+.+.++|+||.++
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaT  228 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGT  228 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECC
Confidence            578999999999999999999998 89999999   7777766542     221  11  222   44567899999999


Q ss_pred             cChhh-hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeee
Q 044797           67 SHVDQ-IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFL  124 (173)
Q Consensus        67 ~~~~~-~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~  124 (173)
                      |..-. ......-  --...++++.++.|..-. |..+ .+.+..+++|.+.++.--++
T Consensus       229 p~Gm~~~~~~~~~--~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~Gl~ML  283 (312)
T 3t4e_A          229 KVGMKPLENESLI--GDVSLLRPELLVTECVYN-PHMT-KLLQQAQQAGCKTIDGYGML  283 (312)
T ss_dssp             STTSTTSTTCCSC--CCGGGSCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEECHHHHH
T ss_pred             cCCCCCCCCCccc--CCHHHcCCCCEEEEeccC-CCCC-HHHHHHHHCCCeEECcHHHH
Confidence            85321 0110000  001346788899998764 3333 34455566788766554333

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.24  E-value=1.4e-06  Score=64.55  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEeccC
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v~~   68 (173)
                      ||++|.|.| .|.+|..+++.|++.| ++|++.+|++++.+.+...++.       -.++..++++++|+||.+...
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence            456788887 7999999999999999 8999999998876443222222       122344667899999988763

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=98.23  E-value=2e-06  Score=67.19  Aligned_cols=114  Identities=9%  Similarity=-0.003  Sum_probs=70.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-------CCeE-EEEcCChHH---------H-HHHHHcC-Cce-ecChhhhhc--CCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-------GYKV-QAFEISDPL---------V-DKFFMLG-GIR-SASPMDAGK--DVS   60 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-------g~~V-~~~d~~~~~---------~-~~~~~~g-~~~-~~~~~~~~~--~~d   60 (173)
                      .||+++|+|.||+.+++.+.+.       +.+| .++|++++.         . +...+.+ +.. ..+..+.++  +.|
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD   84 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD   84 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence            5899999999999999999764       3444 466877542         1 1122223 211 115566664  589


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceeee
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v~  119 (173)
                      +|+.|+|+..+.+...   +-....++.|+.++..+.... ...+++.+..+++|+.+.-
T Consensus        85 vVVe~T~~~~~~~pa~---~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~  141 (325)
T 3ing_A           85 LLVDCTPASRDGVREY---SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRY  141 (325)
T ss_dssp             EEEECCCCCSSSHHHH---HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             EEEECCCCccccchHH---HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEE
Confidence            9999998643322211   123456788999998755211 3456777777777876543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.22  E-value=5.9e-06  Score=63.50  Aligned_cols=73  Identities=16%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|+ +|.++|+.|...|.+|++++++              +.++.+.++++|+||.+++.+..    +.    
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~----  223 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----VK----  223 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC----
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----CC----
Confidence            5799999996 7999999999999999999854              34678889999999999986542    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|.++||.+..
T Consensus       224 -~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          224 -GEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             -GGGSCTTCEEEECCCB
T ss_pred             -HHHcCCCcEEEEccCC
Confidence             1346899999999874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.21  E-value=6.6e-06  Score=62.81  Aligned_cols=73  Identities=14%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|. +|.+++..|.+.|.+|++++++              +.++.+.++++|+||.+++.+..    +.    
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~----  219 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----IT----  219 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC----
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----CC----
Confidence            5789999988 7999999999999999999865              23577889999999999985432    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|.++||.+..
T Consensus       220 -~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          220 -ADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             -GGGSCTTCEEEECCCE
T ss_pred             -HHHcCCCcEEEEeccc
Confidence             1457899999999753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=98.20  E-value=1.6e-06  Score=70.88  Aligned_cols=69  Identities=14%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCcee----cC---hhhh-hcCCCEEEEeccChh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRS----AS---PMDA-GKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~----~~---~~~~-~~~~dvii~~v~~~~   70 (173)
                      .|||-|+|+|++|+.+|+.|.+.|++|++.|+++++++.+.+. ++...    ++   +.++ +++||+++.++.++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            4799999999999999999999999999999999999988753 54321    12   2233 578999888887653

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=98.19  E-value=3.6e-06  Score=65.92  Aligned_cols=110  Identities=10%  Similarity=0.067  Sum_probs=70.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC------C--CeE-EEEcCChHHHHH------HH----HcCCc-eec---Chhhhh-cC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS------G--YKV-QAFEISDPLVDK------FF----MLGGI-RSA---SPMDAG-KD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~------g--~~V-~~~d~~~~~~~~------~~----~~g~~-~~~---~~~~~~-~~   58 (173)
                      .|||+||+|.||+.+++.+.+.      |  .+| .++|+++++.+.      +.    ..++. .++   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5899999999999999988764      2  455 577888654322      11    11221 333   677776 36


Q ss_pred             CCEEEEeccCh---hhhhhhhcCccchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhcCCceee
Q 044797           59 VSALVVVISHV---DQIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        59 ~dvii~~v~~~---~~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~~g~~~v  118 (173)
                      .|+|+.|+|+.   ....+.      ....+..|+.++..... .....+++.+..+++|+.+.
T Consensus        87 iDvVv~~t~~~~~~~~~~~~------~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~  144 (331)
T 3c8m_A           87 FDIVVDATPASADGKKELAF------YKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIR  144 (331)
T ss_dssp             CSEEEECSCCCSSSHHHHHH------HHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEECCCCCCccchHHHH------HHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEE
Confidence            89999999963   111222      23567889999875421 12344677777777777653

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=98.19  E-value=4.4e-06  Score=64.47  Aligned_cols=107  Identities=11%  Similarity=0.043  Sum_probs=72.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--C-CCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--D-VSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~-~dvii~~v~~~~~~~~v~~~   78 (173)
                      .++.|+|+ |+||+.+++++.+.|++ .++..+|.+... .-.|+....+.+++.+  . +|++++++| +..+.+++  
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~~DvaIi~vp-~~~~~~~v--   88 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGS-EVHGVPVYDSVKEALAEHPEINTSIVFVP-APFAPDAV--   88 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHCTTCCEEEECCC-GGGHHHHH--
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCc-eECCEeeeCCHHHHhhcCCCCCEEEEecC-HHHHHHHH--
Confidence            46778898 99999999999999998 445544443100 0147778888999876  5 999999999 45555565  


Q ss_pred             ccchhhcCCCCC-EEEEcCCC-CHHHHHHHHHHHhcCCceee
Q 044797           79 HEGVLKGLQKGA-VIILQSTI-LPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        79 ~~~i~~~l~~g~-~ii~~st~-~~~~~~~l~~~l~~~g~~~v  118 (173)
                       ++..+   .|. .++..+++ .....+++.+.+++.+++++
T Consensus        89 -~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  126 (297)
T 2yv2_A           89 -YEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGATII  126 (297)
T ss_dssp             -HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             -HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence             23332   232 24444443 44456788888888888765

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.19  E-value=5.5e-06  Score=63.10  Aligned_cols=72  Identities=13%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             CeEEEEeCChh-hHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGLDEY-SVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~G~m-G~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      +++.|||.|++ |.++++.|.+.  |.+|++++++.              .++.+.++++|+||.+++.+.-    +.  
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I~--  218 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----LT--  218 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----BC--
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----cC--
Confidence            57899999986 99999999999  89999998654              4677888999999999986542    21  


Q ss_pred             cchhhcCCCCCEEEEcCC
Q 044797           80 EGVLKGLQKGAVIILQST   97 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st   97 (173)
                         .+.+++|.++||.+.
T Consensus       219 ---~~~vk~GavVIDVgi  233 (281)
T 2c2x_A          219 ---ADMVRPGAAVIDVGV  233 (281)
T ss_dssp             ---GGGSCTTCEEEECCE
T ss_pred             ---HHHcCCCcEEEEccC
Confidence               234688999999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.17  E-value=2e-05  Score=57.38  Aligned_cols=65  Identities=17%  Similarity=0.064  Sum_probs=51.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~~dvii~~v~   67 (173)
                      |||.|.|+ |.+|+.+++.|++.|++|++.+|++++.+.+...++..     .+...++++++|+||.+..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCc
Confidence            48999986 99999999999999999999999999887665444432     1111256788999999875

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.16  E-value=2.7e-06  Score=67.23  Aligned_cols=91  Identities=14%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCC-CeEEEEcCChH----HHHHHHH-----------cCCcee-cChhhhhc-CCCE
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSG-YKVQAFEISDP----LVDKFFM-----------LGGIRS-ASPMDAGK-DVSA   61 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~d~~~~----~~~~~~~-----------~g~~~~-~~~~~~~~-~~dv   61 (173)
                      |++||+|+| .|++|..+++.|.++. ++|....+++.    +......           ...... .+++++.+ ++|+
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv   86 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDI   86 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCE
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCE
Confidence            457999999 8999999999998765 57766643221    1221110           011111 24555556 8999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ||+|+|... ..+..      ..++..|..+||.++.
T Consensus        87 V~~atp~~~-~~~~a------~~~~~aG~~VId~s~~  116 (354)
T 1ys4_A           87 VFSALPSDL-AKKFE------PEFAKEGKLIFSNASA  116 (354)
T ss_dssp             EEECCCHHH-HHHHH------HHHHHTTCEEEECCST
T ss_pred             EEECCCchH-HHHHH------HHHHHCCCEEEECCch
Confidence            999999543 33333      1234568889998764

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.16  E-value=8.8e-06  Score=62.12  Aligned_cols=73  Identities=14%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|. +|.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    +.    
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I~----  218 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----LR----  218 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTTC----BC----
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCCc----CC----
Confidence            5789999988 69999999999999999998652              3577889999999999985432    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|.++||.+..
T Consensus       219 -~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          219 -SDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             -GGGSCTTEEEEECCCE
T ss_pred             -HHHcCCCeEEEEeccC
Confidence             2457899999999753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.16  E-value=5.2e-06  Score=63.46  Aligned_cols=73  Identities=12%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|+ +|.++|+.|...|.+|++++++.              .++.+.++++|+||.+++.+.    ++.    
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI~----  217 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FIP----  217 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CBC----
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cCC----
Confidence            5799999997 59999999999999999998554              457788889999999998654    231    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|.++||.+..
T Consensus       218 -~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          218 -GDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             -TTTSCTTCEEEECCCE
T ss_pred             -HHHcCCCcEEEEccCC
Confidence             1346899999999763

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=98.16  E-value=3.1e-06  Score=66.47  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=59.0

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-------------------cCCceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-------------------LGGIRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~d   60 (173)
                      |.||||+|+|.+|..+++.|.++ ++++. +.|++++...+...                   .+.....+..+.+.++|
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD   80 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCC
Confidence            46899999999999999999874 45664 56776554433222                   12222234556667899


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                      +|+.|+|...+. +..      ..+++.|+.+++.+...
T Consensus        81 vV~~atp~~~~~-~~a------~~~l~aG~~VId~sp~~  112 (337)
T 1cf2_P           81 IVIDCTPEGIGA-KNL------KMYKEKGIKAIFQGGEK  112 (337)
T ss_dssp             EEEECCSTTHHH-HHH------HHHHHHTCCEEECTTSC
T ss_pred             EEEECCCchhhH-HHH------HHHHHcCCEEEEecCCC
Confidence            999999965433 332      13344566788877653

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.12  E-value=0.0001  Score=56.93  Aligned_cols=65  Identities=11%  Similarity=0.035  Sum_probs=48.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCC--eEEEEcC--ChHHHHH----HHHc-----CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGY--KVQAFEI--SDPLVDK----FFML-----GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~--~V~~~d~--~~~~~~~----~~~~-----g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|+| +|.+|++++..|+..+.  ++.++|+  ++++++.    +.+.     ..+...+..++++++|+||++..
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG   79 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence            5999999 99999999999988875  7899999  7766532    1111     12222234677899999999875

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.10  E-value=1.4e-06  Score=64.13  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             CeEEEEeCChhhHHHHHH--HHHCCCeE-EEEcCChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAAS--LIRSGYKV-QAFEISDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~--l~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      ++|+|||+|++|..+++.  +...|+++ -++|.++++...... .++...++..+.+++.|++++|+|+.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~  156 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV  156 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence            589999999999999994  44557765 578999987654221 12334556777776669999999953

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.09  E-value=1.6e-05  Score=58.58  Aligned_cols=66  Identities=15%  Similarity=0.056  Sum_probs=54.8

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC-cee-----cChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG-IRS-----ASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-~~~-----~~~~~~~~~~dvii~~v~   67 (173)
                      .|+|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.++ ...     .+..+++.++|+||.+..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            368999986 999999999999999999999999999888776555 321     455677889999998875

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.08  E-value=1.4e-06  Score=68.21  Aligned_cols=101  Identities=12%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC---------CeE-EEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG---------YKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g---------~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      .|||+||+|.||+.+++.+.+..         .++ .++|+++++.+.+.  ....+++.++++ +.|+|+.|+|+....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            68999999999999999987753         454 57898876532211  113566778888 899999999965333


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCH--HHHHHHHHHHhcC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILP--SHMQKLEKTFTGN  113 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~--~~~~~l~~~l~~~  113 (173)
                      .+..      .+.++.|+.++..+- .|  ...+++.+..+++
T Consensus        81 ~~~~------~~AL~aGKhVVtaNk-kpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           81 LRLV------LPALEAGIPLITANK-ALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HHHH------HHHHHTTCCEEECCH-HHHHHSHHHHHHHHHTT
T ss_pred             HHHH------HHHHHcCCeEEECCc-hhHHHHHHHHHHHHHhC
Confidence            3332      346778888887532 12  2345666666555

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.07  E-value=1.6e-05  Score=60.74  Aligned_cols=73  Identities=18%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      +++.|||.|. +|.+++..|.+.|.+|+++++..              .++++.++++|+||.+++.+..    +.    
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~----I~----  219 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL----VK----  219 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC----BC----
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC----CC----
Confidence            5789999887 89999999999999999997642              3577888999999999985432    21    


Q ss_pred             hhhcCCCCCEEEEcCCC
Q 044797           82 VLKGLQKGAVIILQSTI   98 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~   98 (173)
                       .+.+++|.+++|.+..
T Consensus       220 -~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          220 -GEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             -GGGSCTTCEEEECCSC
T ss_pred             -HHHcCCCeEEEEeccc
Confidence             2457999999999764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.07  E-value=3.5e-05  Score=55.82  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----ecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----SASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~~dvii~~v~~   68 (173)
                      |||.|.| .|.+|+.+++.|++.|++|++.+|++++.+.+. .++..     .+...+.+.++|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            4899998 599999999999999999999999998877654 33321     11112667889999998753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.06  E-value=5e-06  Score=60.77  Aligned_cols=68  Identities=7%  Similarity=0.049  Sum_probs=51.3

Q ss_pred             CCCe-EEEEe-CChhhHHHHHHHH-HCCCeEEEEcCChH-HHHHHHHc--CCce-------ecChhhhhcCCCEEEEecc
Q 044797            1 MASK-VGFVG-LDEYSVDMAASLI-RSGYKVQAFEISDP-LVDKFFML--GGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~-IgiiG-~G~mG~~ia~~l~-~~g~~V~~~d~~~~-~~~~~~~~--g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |||| |.|.| .|.+|.++++.|+ +.|++|++.+|+++ +.+.+.+.  ++..       .++..++++++|+||.+..
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag   82 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM   82 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence            3444 98998 6999999999999 89999999999998 77666322  2211       1234566789999999886


Q ss_pred             C
Q 044797           68 H   68 (173)
Q Consensus        68 ~   68 (173)
                      .
T Consensus        83 ~   83 (221)
T 3r6d_A           83 E   83 (221)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=98.05  E-value=2.6e-05  Score=63.45  Aligned_cols=113  Identities=12%  Similarity=0.057  Sum_probs=70.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh----HHHHHHHHcCCceec--ChhhhhcC-CCEEEEec--cCh-hhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD----PLVDKFFMLGGIRSA--SPMDAGKD-VSALVVVI--SHV-DQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~----~~~~~~~~~g~~~~~--~~~~~~~~-~dvii~~v--~~~-~~~   72 (173)
                      ++|.|||+|..|.+.|+.|.+.|++|+++|+++    ...+.+.+.|++...  ...+.+++ +|+||.+.  |.+ +.+
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChhH
Confidence            689999999999999999999999999999854    345667777876542  23445566 89988863  321 122


Q ss_pred             hhhhc------CccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCc
Q 044797           73 DDIFF------GHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        73 ~~v~~------~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~  115 (173)
                      .....      .+.++...+.+..+|--+ |.++..++.-+...|+..|.
T Consensus        90 ~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           90 KKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             HHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            22111      011222222334555444 44444455666667776664

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.05  E-value=3.2e-05  Score=59.54  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHH----cC--Cc-eecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFM----LG--GI-RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~----~g--~~-~~~~~~~~~~~~dvii~~v   66 (173)
                      |||+|||+|++|+++|..|..++.  ++.++|.++++.+-    +.+    .+  .. ...+..+.++++|+|+++.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence            699999999999999999987774  89999999876542    221    11  11 1122345689999999986

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.03  E-value=2.3e-05  Score=61.49  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=55.7

Q ss_pred             CC-CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcC--ChHHHHHHHHc----C----C---------------cee--c
Q 044797            1 MA-SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEI--SDPLVDKFFML----G----G---------------IRS--A   50 (173)
Q Consensus         1 m~-~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~--~~~~~~~~~~~----g----~---------------~~~--~   50 (173)
                      || .||||+|+|++|..+++.|.++ +.++. +.|+  +++....+.+.    |    .               ...  .
T Consensus         1 mM~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1u8f_O            1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER   80 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CCceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence            44 6999999999999999998765 46765 4564  66665554431    1    0               001  2


Q ss_pred             Chhhh-h--cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           51 SPMDA-G--KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        51 ~~~~~-~--~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +++++ .  .++|+|+.|+|...+. +..      .++++.|...+++|.
T Consensus        81 d~~~l~~~~~~vDvV~eatg~~~~~-e~a------~~~l~aGak~V~iSa  123 (335)
T 1u8f_O           81 DPSKIKWGDAGAEYVVESTGVFTTM-EKA------GAHLQGGAKRVIISA  123 (335)
T ss_dssp             SGGGCCTTTTTCCEEEECSSSCCSH-HHH------GGGGGGTCSEEEESS
T ss_pred             CHHHCccccCCCCEEEECCCchhhH-HHH------HHHHhCCCeEEEecc
Confidence            44444 1  4799999999954432 222      245666755555554

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.03  E-value=2.3e-05  Score=61.23  Aligned_cols=66  Identities=18%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCC----hHHHHH----HHHc--C----CceecChhhhhcCC
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEIS----DPLVDK----FFML--G----GIRSASPMDAGKDV   59 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~----~~~~~~----~~~~--g----~~~~~~~~~~~~~~   59 (173)
                      .+||.|+|+ |.+|++++..|...|+       +|.++|++    +++.+.    +.+.  .    +...++..++++++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            369999997 9999999999998885       89999999    554432    2221  1    22346678889999


Q ss_pred             CEEEEecc
Q 044797           60 SALVVVIS   67 (173)
Q Consensus        60 dvii~~v~   67 (173)
                      |+||++..
T Consensus        85 D~Vi~~ag   92 (329)
T 1b8p_A           85 DVALLVGA   92 (329)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeCC
Confidence            99999864

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=98.02  E-value=2.1e-05  Score=61.83  Aligned_cols=89  Identities=16%  Similarity=-0.020  Sum_probs=56.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeE-EEEcCChHHHHHHH-HcCCceec-----------------ChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKV-QAFEISDPLVDKFF-MLGGIRSA-----------------SPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V-~~~d~~~~~~~~~~-~~g~~~~~-----------------~~~~~~~~~dvi   62 (173)
                      .||||+|+|+||..+++.|.++. .++ .+.|+++++..... ..++....                 +.+++.+++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            58999999999999999998764 465 46688766544333 22433322                 333444579999


Q ss_pred             EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +.|+|..... +..      ..+++.|..+++.|.-
T Consensus        82 ~~aTp~~~s~-~~a------~~~~~aG~kvV~~sa~  110 (340)
T 1b7g_O           82 VDTTPNGVGA-QYK------PIYLQLQRNAIFQGGE  110 (340)
T ss_dssp             EECCSTTHHH-HHH------HHHHHTTCEEEECTTS
T ss_pred             EECCCCchhH-HHH------HHHHHcCCeEEEeCCC
Confidence            9999954332 222      1233456666666543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.01  E-value=2.3e-05  Score=61.16  Aligned_cols=67  Identities=15%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec----Ch---hhh-hcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA----SP---MDA-GKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~----~~---~~~-~~~~dvii~~v~~~~~   71 (173)
                      ++|.|+|+|+.|..+++.|.+.|+ |++.|+++++.+ +.+.+.....    +.   .++ ++++|.++++++++..
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~  190 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE  190 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH
Confidence            479999999999999999999999 999999999998 7776654321    22   233 6689999999986543

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=98.01  E-value=4.5e-06  Score=66.05  Aligned_cols=125  Identities=14%  Similarity=0.014  Sum_probs=72.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC----CeE-EEEcCChHHHHHHHHc--CCceecChhhhhcC-----------------
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG----YKV-QAFEISDPLVDKFFML--GGIRSASPMDAGKD-----------------   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g----~~V-~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~-----------------   58 (173)
                      .|||+||+|.||+.+++.+.+..    .++ .++|++...   +.+.  |+..+++..+.+++                 
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~   81 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKT   81 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTT
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhh
Confidence            58999999999999999998863    344 466754321   1111  33322333433322                 


Q ss_pred             ---CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC----CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhh
Q 044797           59 ---VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS----TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDC  131 (173)
Q Consensus        59 ---~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s----t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~  131 (173)
                         .|+|+.|+|++.+.+..       ...++.|+.++..+    +.+....+++. ..+++|+.+.-...  +++.--.
T Consensus        82 ~~~~DvVV~~t~~~~~a~~~-------~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~--vg~giPi  151 (358)
T 1ebf_A           82 SPKPVILVDNTSSAYIAGFY-------TKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEAT--VGAGLPI  151 (358)
T ss_dssp             CSSCEEEEECSCCHHHHTTH-------HHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGG--TTTTSSC
T ss_pred             ccCCcEEEEcCCChHHHHHH-------HHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccc--cccCCcH
Confidence               38999999976543333       35678899998743    23335556777 66667766532221  1222124


Q ss_pred             HHHHHHHHH
Q 044797          132 FTYLFLVKN  140 (173)
Q Consensus       132 ~~~~~~~~~  140 (173)
                      .+.++..++
T Consensus       152 i~~l~~~l~  160 (358)
T 1ebf_A          152 ISFLREIIQ  160 (358)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555565553

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=98.00  E-value=5.4e-05  Score=55.95  Aligned_cols=110  Identities=12%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-HHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-LVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|.|||.|.+|..-++.|.+.|.+|++++++.. .++.+.+.+ +....  -..+.++++|+||.++.++..-..+...
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N~~I~~~  111 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVNKFVKQH  111 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHHHHHHHH
Confidence            6899999999999999999999999999987643 455555543 33221  1234578899999998765432333210


Q ss_pred             -ccchh---------------hcCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797           79 -HEGVL---------------KGLQKGAVIILQST--ILPSHMQKLEKTFTG  112 (173)
Q Consensus        79 -~~~i~---------------~~l~~g~~ii~~st--~~~~~~~~l~~~l~~  112 (173)
                       ..++.               .....|.+.|.+||  .+|...+.+.+.+++
T Consensus       112 ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~  163 (223)
T 3dfz_A          112 IKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSS  163 (223)
T ss_dssp             SCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence             00000               01123556655555  467777777777753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.99  E-value=2.7e-05  Score=61.90  Aligned_cols=94  Identities=15%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC----hHHH--------HHHHHc--CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS----DPLV--------DKFFML--GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~----~~~~--------~~~~~~--g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||.|+|.|.+|..+++.|...|. +|+++||+    .++.        +.+.+.  ......++.++++++|++|-+..
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa  272 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR  272 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC
Confidence            489999999999999999999998 89999998    5442        223222  11234578999999999998865


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHH
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHM  103 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~  103 (173)
                       |..+.      ++..+.+.++.+|++.|+-.|+..
T Consensus       273 -p~l~t------~emVk~Ma~~pIIfalSNPt~E~~  301 (388)
T 1vl6_A          273 -GNILK------PEWIKKMSRKPVIFALANPVPEID  301 (388)
T ss_dssp             -SSCSC------HHHHTTSCSSCEEEECCSSSCSSC
T ss_pred             -CCccC------HHHHHhcCCCCEEEEcCCCCCCCC
Confidence             33322      223345777889999987656544

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.93  E-value=2.9e-05  Score=61.41  Aligned_cols=87  Identities=13%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHH-----cCC---c-eecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFM-----LGG---I-RSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~-----~g~---~-~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+|+| .|.+|..+.+.|.++. .++.......+.-.++.+     .+.   . ...+ ++..+++|+||+|+|....
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~s   95 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGTT   95 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTTH
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchhH
Confidence            5899999 8999999999998876 377666443322111111     111   1 1112 3445689999999996544


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      . +..      ..+ +.|..+||.|+-
T Consensus        96 ~-~~a------~~~-~aG~~VId~sa~  114 (359)
T 1xyg_A           96 Q-EII------KEL-PTALKIVDLSAD  114 (359)
T ss_dssp             H-HHH------HTS-CTTCEEEECSST
T ss_pred             H-HHH------HHH-hCCCEEEECCcc
Confidence            3 232      234 678999999873

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.92  E-value=1.3e-05  Score=61.55  Aligned_cols=65  Identities=15%  Similarity=0.049  Sum_probs=47.8

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCceecChhhhhcCCCEEEEecc
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |+|+|.|.| .|.+|+.+++.|++.|++|++.+|++++.+ +...     .+. ..+..++++++|+||.+..
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            889999997 799999999999999999999999855544 3211     122 3345667889999998764

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.91  E-value=1.1e-05  Score=63.64  Aligned_cols=89  Identities=12%  Similarity=0.059  Sum_probs=55.7

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCC------CeEEEEc--CChHH-HHH----HHH-cCCceecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSG------YKVQAFE--ISDPL-VDK----FFM-LGGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g------~~V~~~d--~~~~~-~~~----~~~-~g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      |+||+|+| .|.+|..+.+.|.+++      .++....  ++..+ ...    +.. ......+...+.+.++|+||+|+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~al   88 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLAL   88 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEECC
Confidence            46999999 9999999999999887      3666554  22222 211    111 11222211123456899999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      |... ..++.      ..+ ..|..+||.|+-
T Consensus        89 g~~~-s~~~~------~~~-~~G~~vIDlSa~  112 (352)
T 2nqt_A           89 PHGH-SAVLA------QQL-SPETLIIDCGAD  112 (352)
T ss_dssp             TTSC-CHHHH------HHS-CTTSEEEECSST
T ss_pred             CCcc-hHHHH------HHH-hCCCEEEEECCC
Confidence            9543 33333      234 678999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.91  E-value=3.1e-05  Score=58.13  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=30.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      .+|.|+|+|.+|+.+++.|...|. +++++|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999997 899999987

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.90  E-value=1e-05  Score=58.06  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=49.8

Q ss_pred             CC-CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            1 MA-SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~-~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |+ |+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+...++..       .++..++++++|+||.+..
T Consensus         1 M~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            55 78999987 99999999999999999999999987653321122221       1233466778999998875

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.89  E-value=2.3e-05  Score=61.72  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----c-C--CceecChhhhhcCCCEEEEeccChhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM----L-G--GIRSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----~-g--~~~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      ++||+|+| .|.+|..+.+.|.++.. ++....+..+.-.++.+    . +  -....+.++ +.++|+||+|+|...+ 
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-   81 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-   81 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-
Confidence            36999999 69999999999987764 76655443222111111    0 1  011222334 4789999999996543 


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .+..      ..++..|..+||.|+-
T Consensus        82 ~~~a------~~~~~aG~~VId~Sa~  101 (345)
T 2ozp_A           82 AREF------DRYSALAPVLVDLSAD  101 (345)
T ss_dssp             HHTH------HHHHTTCSEEEECSST
T ss_pred             HHHH------HHHHHCCCEEEEcCcc
Confidence            3332      2345678899999873

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.87  E-value=3.5e-05  Score=59.24  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChH-HHHH---HHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDP-LVDK---FFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~---~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |+++|.|.| .|.+|+.+++.|++.|++|++.+|+++ +.+.   +...+++.       .++..++++++|+||.+..
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            345899998 599999999999999999999999874 3332   33345432       1234567789999999876

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=97.83  E-value=2.8e-05  Score=60.97  Aligned_cols=90  Identities=18%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             CC-CeEEEEeCChhhHHHHHHHHHC-CCeEEEE-cC--ChHHHHHHHHc----CC---------------------ceec
Q 044797            1 MA-SKVGFVGLDEYSVDMAASLIRS-GYKVQAF-EI--SDPLVDKFFML----GG---------------------IRSA   50 (173)
Q Consensus         1 m~-~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~-d~--~~~~~~~~~~~----g~---------------------~~~~   50 (173)
                      || +||||+|+|++|..+++.|.++ +.++... |+  +++....+.+.    |.                     ....
T Consensus         1 mm~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~   80 (337)
T 3e5r_O            1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred             CCceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence            54 6999999999999999999876 4676544 53  45544444311    10                     0111


Q ss_pred             --Chhhh---hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCC--EEEEcCC
Q 044797           51 --SPMDA---GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGA--VIILQST   97 (173)
Q Consensus        51 --~~~~~---~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~--~ii~~st   97 (173)
                        +++++   ..++|+|+.|+|..... +..      ..+++.|.  +|++.++
T Consensus        81 ~~dp~~l~w~~~~vDvV~eaTg~~~~~-e~a------~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           81 IRNPDEIPWAEAGAEYVVESTGVFTDK-EKA------AAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             CSCGGGCCHHHHTCSEEEECSSSCCSH-HHH------THHHHTTCSEEEESSCC
T ss_pred             cCChHHccccccCCCEEEECCCchhhH-HHH------HHHHHcCCCEEEEecCC
Confidence              44443   14799999999854332 222      23344555  6666654

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.82  E-value=5.9e-06  Score=65.49  Aligned_cols=91  Identities=15%  Similarity=0.073  Sum_probs=53.9

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCe---EEEEc--CChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYK---VQAFE--ISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~---V~~~d--~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      |++||+||| .|..|.-+.+.|.+++++   +....  ++..+.-.+............+.++++|++|.|+|.. ...+
T Consensus         1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~s~~   79 (366)
T 3pwk_A            1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSS-TSAK   79 (366)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHH-HHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChH-hHHH
Confidence            788999998 899999999999988663   33332  2221110011011111111123467899999999843 3333


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ..      ..++..|..+||.|+-
T Consensus        80 ~a------~~~~~~G~~vIDlSa~   97 (366)
T 3pwk_A           80 YA------PYAVKAGVVVVDNTSY   97 (366)
T ss_dssp             HH------HHHHHTTCEEEECSST
T ss_pred             HH------HHHHHCCCEEEEcCCc
Confidence            33      1334568899999863

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.80  E-value=0.00031  Score=54.50  Aligned_cols=66  Identities=11%  Similarity=0.097  Sum_probs=46.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHC-C--CeEEEEcCChH---HHHHHHHcCC--cee----cChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRS-G--YKVQAFEISDP---LVDKFFMLGG--IRS----ASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~-g--~~V~~~d~~~~---~~~~~~~~g~--~~~----~~~~~~~~~~dvii~~v~~   68 (173)
                      |||+|+| +|.+|++++..|... +  .++.++|+++.   ..-.+.+...  ...    ++..+.++++|+||++...
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            5999999 899999999999765 4  58999999872   1112222211  222    2456788999999998743

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.79  E-value=2.1e-05  Score=61.67  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=56.7

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHC-CCeEEEEcCCh---H---HHHHH----HHc-CCceec--ChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRS-GYKVQAFEISD---P---LVDKF----FML-GGIRSA--SPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~d~~~---~---~~~~~----~~~-g~~~~~--~~~~~~~~~dvii~~v   66 (173)
                      |+||+|+| .|.+|..+.+.|.++ .+++.....+.   +   ++...    ... .....+  +.+++.+++|++|+|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~   83 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLAT   83 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECC
Confidence            47999999 599999999999884 45775443222   1   22211    111 222222  3445448999999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      |... ..+..      ..++..|..+||.|+-
T Consensus        84 p~~~-s~~~~------~~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           84 AHEV-SHDLA------PQFLEAGCVVFDLSGA  108 (337)
T ss_dssp             CHHH-HHHHH------HHHHHTTCEEEECSST
T ss_pred             ChHH-HHHHH------HHHHHCCCEEEEcCCc
Confidence            9543 33343      1335678899999874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=1.1e-05  Score=59.07  Aligned_cols=65  Identities=11%  Similarity=0.070  Sum_probs=49.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC-------ceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG-------IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ||+|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+. .++       .-..+..++++++|+||.+..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            46899997 699999999999999999999999987654321 111       112234567789999999875

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.75  E-value=0.00013  Score=55.15  Aligned_cols=65  Identities=12%  Similarity=-0.013  Sum_probs=50.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |||.|.| .|.+|+.+++.|.+. |++|++.+|++++...+...+++.       .++..++++++|+||.+..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~   74 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS   74 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4899997 599999999999988 999999999988765554434332       1234567889999999875

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.72  E-value=4.4e-05  Score=60.16  Aligned_cols=89  Identities=15%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCC-CeEEEEc-CChHHHHHHHH--------------cCCceec-ChhhhhcCCCEEE
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSG-YKVQAFE-ISDPLVDKFFM--------------LGGIRSA-SPMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~d-~~~~~~~~~~~--------------~g~~~~~-~~~~~~~~~dvii   63 (173)
                      ++||+|+| .|.+|..+.+.|.++. .++.... .+.+.-+.+.+              ......+ ++++ ++++|+||
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf   82 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVL   82 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEE
Confidence            46899999 8999999999988764 4676553 22111111110              1122222 3334 47899999


Q ss_pred             EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +|+|...+ .+..      ..+++.|..+||.++-
T Consensus        83 ~atp~~~s-~~~a------~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           83 SALPNELA-ESIE------LELVKNGKIVVSNASP  110 (350)
T ss_dssp             ECCCHHHH-HHHH------HHHHHTTCEEEECSST
T ss_pred             ECCChHHH-HHHH------HHHHHCCCEEEECCcc
Confidence            99995433 3332      2345668889998753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.72  E-value=0.0001  Score=57.65  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=65.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-cChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-ASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+... .+.+++.+..|++|-++..+..+...+     
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~-----  252 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYL-----  252 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHH-----
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHH-----
Confidence            47899999999999999999999999999999999998888886432 333343447899999998653444443     


Q ss_pred             hhhcCCCCCEEEEcCC
Q 044797           82 VLKGLQKGAVIILQST   97 (173)
Q Consensus        82 i~~~l~~g~~ii~~st   97 (173)
                        ..++++..++..+.
T Consensus       253 --~~l~~~G~iv~~G~  266 (348)
T 3two_A          253 --KLLTYNGDLALVGL  266 (348)
T ss_dssp             --TTEEEEEEEEECCC
T ss_pred             --HHHhcCCEEEEECC
Confidence              34455556665543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.71  E-value=7e-05  Score=57.56  Aligned_cols=67  Identities=10%  Similarity=-0.010  Sum_probs=49.8

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCCh------HHHHHH---HHcCCce-------ecChhhhhcCCCEEE
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISD------PLVDKF---FMLGGIR-------SASPMDAGKDVSALV   63 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~------~~~~~~---~~~g~~~-------~~~~~~~~~~~dvii   63 (173)
                      ||++|.|.| .|.+|+.+++.|++.|++|++.+|++      ++.+.+   ...++..       .++..++++++|+||
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            568899998 49999999999999999999999986      343332   2334432       123456788999999


Q ss_pred             Eecc
Q 044797           64 VVIS   67 (173)
Q Consensus        64 ~~v~   67 (173)
                      .+..
T Consensus        83 ~~a~   86 (321)
T 3c1o_A           83 SALP   86 (321)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.69  E-value=1.3e-05  Score=62.89  Aligned_cols=89  Identities=10%  Similarity=-0.007  Sum_probs=51.3

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCC---eEEEE-cCC-hHHHHHHHHcCCceec-ChhhhhcCCCEEEEeccChhhhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGY---KVQAF-EIS-DPLVDKFFMLGGIRSA-SPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~---~V~~~-d~~-~~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      ++||+|+| .|.+|..+.+.|.++++   ++... +++ ..+.-.+....+...+ +.. .++++|+||.|+|... ..+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~-~~~~~DvV~~a~g~~~-s~~   83 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSF-DFSSVGLAFFAAAAEV-SRA   83 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGC-CGGGCSEEEECSCHHH-HHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHH-HhcCCCEEEEcCCcHH-HHH
Confidence            47899999 89999999999986664   44544 332 2110001000111111 222 2568999999998433 233


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ..      ..+++.|..+||.|+-
T Consensus        84 ~a------~~~~~aG~kvId~Sa~  101 (340)
T 2hjs_A           84 HA------ERARAAGCSVIDLSGA  101 (340)
T ss_dssp             HH------HHHHHTTCEEEETTCT
T ss_pred             HH------HHHHHCCCEEEEeCCC
Confidence            32      1234557778887753

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=97.69  E-value=0.00028  Score=58.03  Aligned_cols=113  Identities=17%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCCh-HHHHHHHHcCCceec-ChhhhhcCCCEEEEe--ccC-hhhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRSGYKVQAFEISD-PLVDKFFMLGGIRSA-SPMDAGKDVSALVVV--ISH-VDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~--v~~-~~~~~~v~   76 (173)
                      ++|.|||.|..|.+ +|+.|.+.|++|+++|.++ ...+.+.+.|+.... ...+.+.++|+||..  +|. .+.+....
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a~  102 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAAR  102 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHHH
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHH
Confidence            68999999999995 8999999999999999764 345667777876543 123446789999886  332 12222221


Q ss_pred             c------Cccchhhc-CCCCCEEE-EcCCCCHHHHHHHHHHHhcCCc
Q 044797           77 F------GHEGVLKG-LQKGAVII-LQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        77 ~------~~~~i~~~-l~~g~~ii-~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      .      .+.+++.. ++....|. .-|.++..++.-+...|+..|.
T Consensus       103 ~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  149 (494)
T 4hv4_A          103 EARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL  149 (494)
T ss_dssp             HTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence            1      00122222 23223443 3344555556667777776664

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.68  E-value=0.00016  Score=56.56  Aligned_cols=88  Identities=14%  Similarity=0.025  Sum_probs=63.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-     +..+.+      ...|++|-++..+.
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~  248 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPK  248 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHH
Confidence            478999999999999999999999 999999999998888877764221     122222      25899999998645


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+...+       +.++++..++..+.
T Consensus       249 ~~~~~~-------~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          249 ALEQGL-------QAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHHHHH-------HHEEEEEEEEECCC
T ss_pred             HHHHHH-------HHHhcCCEEEEEcc
Confidence            444443       34455556665543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.68  E-value=2e-05  Score=57.44  Aligned_cols=66  Identities=15%  Similarity=0.088  Sum_probs=49.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCce-ecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIR-SASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~-~~~~~~~~~~~dvii~~v~~   68 (173)
                      |||.|.| .|.+|..+++.|++.|++|++.+|++++.+.+...     .+.- ..+..++++++|+||.+...
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~   73 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS   73 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence            4899997 89999999999999999999999998765432110     1111 22345667889999998753

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.66  E-value=8.2e-05  Score=56.70  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=51.1

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCCh-------HHHHHH---HHcCCce-------ecChhhhhcCCCEE
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISD-------PLVDKF---FMLGGIR-------SASPMDAGKDVSAL   62 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~-------~~~~~~---~~~g~~~-------~~~~~~~~~~~dvi   62 (173)
                      ++++|.|.|+ |.+|+.+++.|++.|++|++.+|++       ++.+.+   ...+++.       .++..++++++|+|
T Consensus         1 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v   80 (307)
T 2gas_A            1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV   80 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence            4678999985 9999999999999999999999986       554433   2335432       12345667889999


Q ss_pred             EEeccC
Q 044797           63 VVVISH   68 (173)
Q Consensus        63 i~~v~~   68 (173)
                      |.+...
T Consensus        81 i~~a~~   86 (307)
T 2gas_A           81 ICAAGR   86 (307)
T ss_dssp             EECSSS
T ss_pred             EECCcc
Confidence            998763

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.65  E-value=4.3e-05  Score=60.93  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC---eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY---KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .||.|||. |..|..-++.+...|.   +|++||+++...      |..     .+.+.++|+||.|+........++. 
T Consensus       215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~-----~~~i~~aDivIn~vlig~~aP~Lvt-  282 (394)
T 2qrj_A          215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGP-----FDEIPQADIFINCIYLSKPIAPFTN-  282 (394)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSC-----CTHHHHSSEEEECCCCCSSCCCSCC-
T ss_pred             CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCc-----hhhHhhCCEEEECcCcCCCCCcccC-
Confidence            47899999 9999999999999998   899999886321      322     1446689999999985332233332 


Q ss_pred             ccchhhcC-CCCCEEEEcCC
Q 044797           79 HEGVLKGL-QKGAVIILQST   97 (173)
Q Consensus        79 ~~~i~~~l-~~g~~ii~~st   97 (173)
                       .+..+.+ ++|.+|+|.+.
T Consensus       283 -~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          283 -MEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             -HHHHCCTTCCCCEEEETTC
T ss_pred             -HHHHhcCcCCCeEEEEEec
Confidence             2345667 99999999974

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.64  E-value=5.5e-05  Score=55.19  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |+..|.|||+|.-|...|..|.++|++|+++|+++
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            88899999999999999999999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.64  E-value=2.8e-05  Score=58.91  Aligned_cols=63  Identities=21%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             CC-CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-------eecChhhhhcC-CCEEEEecc
Q 044797            1 MA-SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKD-VSALVVVIS   67 (173)
Q Consensus         1 m~-~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~-~dvii~~v~   67 (173)
                      |+ |+|.|.|+|.+|+.+++.|++.|++|++.+|++++..    .++.       -..+..+++++ +|+||.+..
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            53 6899999999999999999999999999999876531    1222       12233455665 999998864

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.64  E-value=6.4e-05  Score=58.13  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=48.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      +|+|.|.| .|.+|+.+++.|++.|++|++.+|++++.+.+.+.++..       ..+..++++++|+||.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            36899997 599999999999999999999999877655443323321       1234466778999998764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.64  E-value=0.00014  Score=55.43  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=49.0

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCCh------HHHHHH---HHcCCcee-------cChhhhhcCCCEEEE
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISD------PLVDKF---FMLGGIRS-------ASPMDAGKDVSALVV   64 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~------~~~~~~---~~~g~~~~-------~~~~~~~~~~dvii~   64 (173)
                      +++|.|.|+ |.+|+.+++.|++.|++|++.+|++      ++.+.+   ...++...       .+..++++++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999985 9999999999999999999999973      343322   23344321       234566788999999


Q ss_pred             ecc
Q 044797           65 VIS   67 (173)
Q Consensus        65 ~v~   67 (173)
                      +..
T Consensus        84 ~a~   86 (308)
T 1qyc_A           84 TVG   86 (308)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            886

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.63  E-value=0.0007  Score=52.95  Aligned_cols=88  Identities=10%  Similarity=-0.052  Sum_probs=63.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee------cCh-hhh---h-----cCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS------ASP-MDA---G-----KDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~~-~~~---~-----~~~dvii~~v~   67 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+...      .+. +++   .     ...|++|-++.
T Consensus       170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g  249 (352)
T 1e3j_A          170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG  249 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCC
Confidence            47899999999999999999999999999999999988888776421      111 111   1     35899999997


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+..++..+       ..++++..++..+.
T Consensus       250 ~~~~~~~~~-------~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          250 NEKCITIGI-------NITRTGGTLMLVGM  272 (352)
T ss_dssp             CHHHHHHHH-------HHSCTTCEEEECSC
T ss_pred             CHHHHHHHH-------HHHhcCCEEEEEec
Confidence            554444333       45666666766643

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.62  E-value=0.00038  Score=55.03  Aligned_cols=87  Identities=15%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhhc-----CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAGK-----DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~~-----~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+       ..+.+.     ..|++|-++..+
T Consensus       195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~  274 (378)
T 3uko_A          195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNV  274 (378)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCH
Confidence            478999999999999999999998 8999999999999888888653222       222221     589999999865


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      ..++..+       ..++++ ..++..+
T Consensus       275 ~~~~~~~-------~~l~~g~G~iv~~G  295 (378)
T 3uko_A          275 SVMRAAL-------ECCHKGWGTSVIVG  295 (378)
T ss_dssp             HHHHHHH-------HTBCTTTCEEEECS
T ss_pred             HHHHHHH-------HHhhccCCEEEEEc
Confidence            5554443       445664 5666554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.61  E-value=0.00063  Score=53.64  Aligned_cols=87  Identities=13%  Similarity=0.142  Sum_probs=63.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-------Chhhhhc-----CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-------SPMDAGK-----DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~~-----~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...-       +..+.+.     ..|+||-++..+
T Consensus       193 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~  272 (373)
T 1p0f_A          193 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI  272 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCH
Confidence            479999999999999999998998 799999999999988888865321       1222221     589999999754


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      ..+...+       +.++++ ..++..+
T Consensus       273 ~~~~~~~-------~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          273 ETMMNAL-------QSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHHHHHH-------HTBCTTTCEEEECC
T ss_pred             HHHHHHH-------HHHhcCCCEEEEEc
Confidence            4444433       455666 6666554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.61  E-value=0.00067  Score=53.54  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=63.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-------Chhhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-------SPMDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-       +..+.+     ...|+||-++..+
T Consensus       197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~  276 (376)
T 1e3i_A          197 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA  276 (376)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCH
Confidence            478999999999999999999998 799999999999988888865321       122222     1589999999754


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      ..+...+       +.++++ ..++..+
T Consensus       277 ~~~~~~~-------~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          277 QTLKAAV-------DCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHHHHHH-------HTBCTTTCEEEECC
T ss_pred             HHHHHHH-------HHhhcCCCEEEEEC
Confidence            4444443       455666 5666554

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=97.61  E-value=0.0003  Score=57.74  Aligned_cols=112  Identities=17%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCChH-HHHHHHHcCCcee--cChhhhhcCCCEEEEec--cC-hhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRS--ASPMDAGKDVSALVVVI--SH-VDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v--~~-~~~~~~v   75 (173)
                      ++|.|||+|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|+...  .+. +.++++|+||..-  |. .+.+...
T Consensus        20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~p~~~~a   98 (491)
T 2f00_A           20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVSSAISADNPEIVAA   98 (491)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECTTCCTTCHHHHHH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHH
Confidence            57999999999997 99999999999999998643 3355666777654  223 3457889888763  21 1112111


Q ss_pred             -------hcCccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797           76 -------FFGHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        76 -------~~~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~  115 (173)
                             +...+-+...++...+| |.-|.++..++.-+...|+..|.
T Consensus        99 ~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~  146 (491)
T 2f00_A           99 HEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL  146 (491)
T ss_dssp             HHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence                   11111112222222344 34455666666777778877664

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.61  E-value=0.00025  Score=55.30  Aligned_cols=74  Identities=18%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhhh----cCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDAG----KDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~~----~~~dvii~~v~~~~~~~   73 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+... +    +..+.+    ...|++|.++..+..++
T Consensus       166 ~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  245 (339)
T 1rjw_A          166 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQ  245 (339)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHHH
Confidence            47899999999999999999999999999999999988888776432 1    111222    46899999987544444


Q ss_pred             hhh
Q 044797           74 DIF   76 (173)
Q Consensus        74 ~v~   76 (173)
                      ..+
T Consensus       246 ~~~  248 (339)
T 1rjw_A          246 SAY  248 (339)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.60  E-value=1.3e-05  Score=58.91  Aligned_cols=67  Identities=7%  Similarity=0.007  Sum_probs=47.0

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeE-EEEcCChHHHHHHHH-cCCceecChhhhhc-CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKV-QAFEISDPLVDKFFM-LGGIRSASPMDAGK-DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~~dvii~~v~~~   69 (173)
                      .+++|||+|++|..+++.+. ..|+++ -++|.++++...... ..+...++..+.++ +.|.+++|+|..
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            58999999999999998632 226665 577999887654221 12223556677765 589999999954

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.60  E-value=0.00015  Score=56.41  Aligned_cols=66  Identities=11%  Similarity=0.029  Sum_probs=49.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCCh----HHHHH---HHHcCCce-------ecChhhhhc--CCCEEEEe
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISD----PLVDK---FFMLGGIR-------SASPMDAGK--DVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~----~~~~~---~~~~g~~~-------~~~~~~~~~--~~dvii~~   65 (173)
                      ++|.|.|+ |.+|+.+++.|++.|++|++.+|++    ++.+.   +...++..       ..+..++++  ++|+||.+
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~   90 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST   90 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence            58999987 9999999999999999999999976    44442   33334432       123456677  89999998


Q ss_pred             ccC
Q 044797           66 ISH   68 (173)
Q Consensus        66 v~~   68 (173)
                      ...
T Consensus        91 a~~   93 (346)
T 3i6i_A           91 VGG   93 (346)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            863

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.60  E-value=0.00013  Score=55.58  Aligned_cols=65  Identities=17%  Similarity=0.112  Sum_probs=49.4

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC-CeEEEEcCChHHH--HHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG-YKVQAFEISDPLV--DKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g-~~V~~~d~~~~~~--~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      ++|.|.|. |.+|+.+++.|++.| ++|++.+|++++.  +.+...++..       ..+..++++++|+||.+..
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            68999986 999999999999998 9999999987654  3344445432       1234466788999999875

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.59  E-value=1.6e-05  Score=62.39  Aligned_cols=90  Identities=11%  Similarity=-0.058  Sum_probs=53.7

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCC---CeEEEEc-C-ChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSG---YKVQAFE-I-SDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g---~~V~~~d-~-~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      ++||+|+| .|.+|..+.+.|.+++   +++..+. + +..+.-.+....+...+...+..+++|+||.|+|... ..+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~   81 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKW   81 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHH
Confidence            57999999 9999999999998874   4565554 2 2211000111111111111123468999999998543 2333


Q ss_pred             hcCccchhhcCCCCCEEEEcCCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .      ..+++.|..+||.|+-
T Consensus        82 a------~~~~~~G~~vId~s~~   98 (336)
T 2r00_A           82 A------PIAAEAGVVVIDNTSH   98 (336)
T ss_dssp             H------HHHHHTTCEEEECSST
T ss_pred             H------HHHHHcCCEEEEcCCc
Confidence            2      2345568889998764

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.59  E-value=1.4e-05  Score=58.66  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=46.9

Q ss_pred             CeEEEEeCChhhHHHHHHH--HHCCCeE-EEEcCChH-HHHH-HHHcCCce--ecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASL--IRSGYKV-QAFEISDP-LVDK-FFMLGGIR--SASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l--~~~g~~V-~~~d~~~~-~~~~-~~~~g~~~--~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      .+++|+|+|++|.++++.+  ...|+++ -++|.+++ +... .. .|+.+  .++..+.++  +.|.+++|+|..
T Consensus        85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            5799999999999999984  4566765 47799988 6543 11 24443  345666665  589999999954

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.59  E-value=0.00057  Score=53.61  Aligned_cols=87  Identities=15%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-c-C---hhhh---h-----cCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-A-S---PMDA---G-----KDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~-~---~~~~---~-----~~~dvii~~v~~   68 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+... + +   ..+.   +     ...|+||-++..
T Consensus       173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~  252 (356)
T 1pl8_A          173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA  252 (356)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCC
Confidence            478999999999999999999998 89999999999988888886421 1 1   1111   1     358999999985


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +..+...+       ..++++..++..+
T Consensus       253 ~~~~~~~~-------~~l~~~G~iv~~G  273 (356)
T 1pl8_A          253 EASIQAGI-------YATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHHH-------HHSCTTCEEEECS
T ss_pred             hHHHHHHH-------HHhcCCCEEEEEe
Confidence            54444333       4566766676654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.59  E-value=0.00081  Score=53.02  Aligned_cols=87  Identities=15%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-------Chhhhhc-----CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-------SPMDAGK-----DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~~-----~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...-       +..+.+.     ..|++|-++..+
T Consensus       193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  272 (374)
T 2jhf_A          193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL  272 (374)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCH
Confidence            478999999999999999999998 799999999999888888864321       1222221     589999999865


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      ..+...+       ..++++ ..++..+
T Consensus       273 ~~~~~~~-------~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          273 DTMVTAL-------SCCQEAYGVSVIVG  293 (374)
T ss_dssp             HHHHHHH-------HHBCTTTCEEEECS
T ss_pred             HHHHHHH-------HHhhcCCcEEEEec
Confidence            4444443       445666 5666554

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.58  E-value=0.00015  Score=55.36  Aligned_cols=66  Identities=20%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCC-----hHHHHHH---HHcCCcee-------cChhhhhcCCCEEEEe
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEIS-----DPLVDKF---FMLGGIRS-------ASPMDAGKDVSALVVV   65 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~-----~~~~~~~---~~~g~~~~-------~~~~~~~~~~dvii~~   65 (173)
                      +++|.|.| .|.+|+.+++.|++.|++|++.+|+     +++.+.+   ...++...       .+..++++++|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            37899998 5999999999999999999999998     4454433   22344321       2345677899999998


Q ss_pred             cc
Q 044797           66 IS   67 (173)
Q Consensus        66 v~   67 (173)
                      ..
T Consensus        84 a~   85 (313)
T 1qyd_A           84 LA   85 (313)
T ss_dssp             CC
T ss_pred             Cc
Confidence            75

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.58  E-value=0.00014  Score=56.57  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCCh--HHHH----HHHHcC------CceecChhhhhcCCCE
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISD--PLVD----KFFMLG------GIRSASPMDAGKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~--~~~~----~~~~~g------~~~~~~~~~~~~~~dv   61 (173)
                      .|||.|+|. |.+|++++..|+..|+       +|.++|+++  ++.+    .+.+..      +....+..++++++|+
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~   83 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence            368999996 9999999999999886       899999875  2222    122111      1223456778899999


Q ss_pred             EEEec
Q 044797           62 LVVVI   66 (173)
Q Consensus        62 ii~~v   66 (173)
                      ||.+.
T Consensus        84 Vih~A   88 (327)
T 1y7t_A           84 ALLVG   88 (327)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.57  E-value=0.00094  Score=52.67  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-------Chhhhhc-----CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-------SPMDAGK-----DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~~-----~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...-       +..+.+.     ..|++|-++..+
T Consensus       194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  273 (374)
T 1cdo_A          194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNV  273 (374)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCH
Confidence            478999999999999999999998 799999999999988888864321       1222222     589999999754


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcCC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQST   97 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~st   97 (173)
                      ..+...+       ..++++ ..++..+.
T Consensus       274 ~~~~~~~-------~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          274 GVMRNAL-------ESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHHHHHH-------HTBCTTTCEEEECSC
T ss_pred             HHHHHHH-------HHhhcCCcEEEEEcC
Confidence            4444433       456666 66666543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.56  E-value=8.9e-05  Score=56.76  Aligned_cols=66  Identities=11%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcC--CCEEEEecc
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD--VSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~   67 (173)
                      |.|+|.|.|+ |.+|+.+++.|++.|++|++.+|++++.. .....+.-..+..+++++  +|+||.+..
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            7789999976 99999999999999999999998765411 111112222344555653  899998764

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=97.56  E-value=0.00011  Score=59.87  Aligned_cols=106  Identities=12%  Similarity=0.067  Sum_probs=73.0

Q ss_pred             CeEEEEeCC----hhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLD----EYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G----~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++|+|||.+    ++|+.+.++|.+.| ..|+..|++.+.+     .|.....+..++-+..|++++++| +..+.+++ 
T Consensus         9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp-~~~~~~~v-   81 (457)
T 2csu_A            9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTL-   81 (457)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHHH-
T ss_pred             CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecC-HHHHHHHH-
Confidence            579999998    89999999999985 6777777663221     377777888888888999999999 55666666 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHH-------HHHHHHHHHhcCCceeee
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPS-------HMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~-------~~~~l~~~l~~~g~~~v~  119 (173)
                        ++..+.- - +.++..+.+-++       ..+++.+.++++|++++.
T Consensus        82 --~e~~~~G-i-~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG  126 (457)
T 2csu_A           82 --IQCGEKG-V-KGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (457)
T ss_dssp             --HHHHHHT-C-CEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             --HHHHHcC-C-CEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence              2333321 1 234444433221       256777777778888764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.55  E-value=0.00016  Score=57.05  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-HcCCcee---cCh---hhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-MLGGIRS---ASP---MDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~---~~~---~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|....   .+.   .+.....|++|-++..+..++..
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~  268 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPL  268 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHHHH
Confidence            4789999999999999999999999999999999988776 5675422   111   22234689999998754333333


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +       +.++++..++..+
T Consensus       269 ~-------~~l~~~G~iv~~g  282 (366)
T 1yqd_A          269 F-------GLLKSHGKLILVG  282 (366)
T ss_dssp             H-------HHEEEEEEEEECC
T ss_pred             H-------HHHhcCCEEEEEc
Confidence            3       2334444555544

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.54  E-value=0.0006  Score=54.77  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=70.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CCCeEE-EEcC----------ChHHHHHHHHc-C-------CceecChhhhh-cCCCE
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SGYKVQ-AFEI----------SDPLVDKFFML-G-------GIRSASPMDAG-KDVSA   61 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~dv   61 (173)
                      ++|.|.|.|++|+..++.|.+ .|.+|+ +.|.          +++.+.++.+. +       .+.. +..+.. .+||+
T Consensus       210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~~~DI  288 (415)
T 2tmg_A          210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI  288 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTCSCSE
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcCCCcE
Confidence            589999999999999999998 998876 6666          66666666554 2       1222 344543 47999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      ++-|...+....+-.       +.+ .-++|+...+ .|.+ .+..+.+.++|+.++.+
T Consensus       289 liP~A~~n~i~~~~a-------~~l-~ak~V~EgAN-~p~t-~~a~~~l~~~Gi~~~PD  337 (415)
T 2tmg_A          289 LVPAALEGAIHAGNA-------ERI-KAKAVVEGAN-GPTT-PEADEILSRRGILVVPD  337 (415)
T ss_dssp             EEECSSTTSBCHHHH-------TTC-CCSEEECCSS-SCBC-HHHHHHHHHTTCEEECH
T ss_pred             EEecCCcCccCcccH-------HHc-CCeEEEeCCC-cccC-HHHHHHHHHCCCEEECh
Confidence            999987433222221       223 3445555544 4433 55667788899998764

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=97.54  E-value=0.0007  Score=56.07  Aligned_cols=113  Identities=12%  Similarity=0.057  Sum_probs=69.6

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCC--hHHHHHHHHcCCcee--cChhhhhcCCCEEEEe--ccC-hhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRSGYKVQAFEIS--DPLVDKFFMLGGIRS--ASPMDAGKDVSALVVV--ISH-VDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~--~~~~~~~~~~g~~~~--~~~~~~~~~~dvii~~--v~~-~~~~~~   74 (173)
                      ++|.|||.|..|.+ +|+.|.+.|++|+++|.+  +...+.+.+.|+...  .+......++|+||..  +|. .+.+..
T Consensus        20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~   99 (524)
T 3hn7_A           20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY   99 (524)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred             CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence            68999999999986 788899999999999986  344567777887654  2344444678998886  332 222322


Q ss_pred             hhc------Cccchh-hcCCCC-CEEEEc-CCCCHHHHHHHHHHHhcCCc
Q 044797           75 IFF------GHEGVL-KGLQKG-AVIILQ-STILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        75 v~~------~~~~i~-~~l~~g-~~ii~~-st~~~~~~~~l~~~l~~~g~  115 (173)
                      ...      .+.+++ ..+.++ .+|.-+ |.++..++.-+...|+..|.
T Consensus       100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~  149 (524)
T 3hn7_A          100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI  149 (524)
T ss_dssp             HHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            211      011232 223233 444344 44555555666667766553

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.54  E-value=0.00038  Score=56.25  Aligned_cols=107  Identities=10%  Similarity=0.062  Sum_probs=69.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHHHHc-C-------CceecChhhhh-cCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKFFML-G-------GIRSASPMDAG-KDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~dvi   62 (173)
                      ++|+|.|.|++|+..++.|.+.|.+|+ +.|+          +.+.+.++.+. +       .+.. +..+.. .+||++
T Consensus       236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~~DIl  314 (440)
T 3aog_A          236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFL  314 (440)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCCCSEE
T ss_pred             CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCCCcEE
Confidence            589999999999999999999999886 6776          56666665543 2       1222 334443 479999


Q ss_pred             EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +-|...+....+-       .+.+ .-++|+...+ .|.+ .+..+.+.++|+.|+.+
T Consensus       315 vPcA~~n~i~~~n-------a~~l-~ak~VvEgAN-~p~t-~eA~~iL~~~GI~~~PD  362 (440)
T 3aog_A          315 VPAALEKQITEQN-------AWRI-RARIVAEGAN-GPTT-PAADDILLEKGVLVVPD  362 (440)
T ss_dssp             EECSSSSCBCTTT-------GGGC-CCSEEECCSS-SCBC-HHHHHHHHHHTCEEECH
T ss_pred             EecCCcCccchhh-------HHHc-CCcEEEecCc-cccC-HHHHHHHHHCCCEEECh
Confidence            9997643322211       1233 3455555544 3433 55667788889998754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.53  E-value=0.00018  Score=52.94  Aligned_cols=65  Identities=17%  Similarity=0.029  Sum_probs=49.1

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      +++|.|.| .|.+|..+++.|++.  |++|++.+|++++.+.+ ..++..       ..+..++++++|+||.+..
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            46788886 699999999999999  89999999998876654 122221       1234466788999998764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.52  E-value=0.00086  Score=52.82  Aligned_cols=87  Identities=14%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-------Chhhhhc-----CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-------SPMDAGK-----DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~~-----~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-       +..+.+.     ..|++|-++..+
T Consensus       192 ~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~  271 (373)
T 2fzw_A          192 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV  271 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcH
Confidence            478999999999999999999998 799999999999888877764321       1222222     589999999754


Q ss_pred             hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKG-AVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s   96 (173)
                      ..++..+       +.++++ ..++..+
T Consensus       272 ~~~~~~~-------~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          272 KVMRAAL-------EACHKGWGVSVVVG  292 (373)
T ss_dssp             HHHHHHH-------HTBCTTTCEEEECS
T ss_pred             HHHHHHH-------HhhccCCcEEEEEe
Confidence            4444433       455666 6666554

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=97.52  E-value=0.00029  Score=57.54  Aligned_cols=112  Identities=13%  Similarity=0.177  Sum_probs=68.4

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCChH-HHHHHHHcCCcee--cChhhhhcCCCEEEEec--cC-hhhhhhh
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRS--ASPMDAGKDVSALVVVI--SH-VDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v--~~-~~~~~~v   75 (173)
                      ++|.|||+|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|+...  .+. +.++++|+||..-  |. .+.+...
T Consensus        19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~~~~~~a   97 (475)
T 1p3d_A           19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVSSAIKDDNPELVTS   97 (475)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHH
Confidence            57999999999997 99999999999999998653 3355666777653  223 3457899888763  21 1112111


Q ss_pred             -------hcCccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797           76 -------FFGHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        76 -------~~~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~  115 (173)
                             +...+-+...+....+| |.-|.++..++.-+...|+..|.
T Consensus        98 ~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~  145 (475)
T 1p3d_A           98 KQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKL  145 (475)
T ss_dssp             HHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence                   11111111222222344 34455666666777778877664

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.52  E-value=0.00061  Score=54.80  Aligned_cols=108  Identities=16%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHHHHc-C-Cce-ecChhhh-hcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKFFML-G-GIR-SASPMDA-GKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-~~~-~~~~~~~-~~~~dvii~~v~   67 (173)
                      ++|.|.|.|++|+..++.|.+.|.+|+ +.|+          +.+.+.++.+. + +.. .-+..++ -.+||+.+-|..
T Consensus       219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVliP~A~  298 (419)
T 3aoe_E          219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLAAR  298 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEEeccc
Confidence            589999999999999999999999887 7788          77777666554 2 110 1122333 347999999976


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      .+....+.       .+.+ .=++|+...+ .|.+ .+..+.|.++|+.|+.+
T Consensus       299 ~n~i~~~~-------A~~l-~ak~V~EgAN-~p~t-~~A~~~L~~~Gi~~~PD  341 (419)
T 3aoe_E          299 EGALDGDR-------ARQV-QAQAVVEVAN-FGLN-PEAEAYLLGKGALVVPD  341 (419)
T ss_dssp             TTCBCHHH-------HTTC-CCSEEEECST-TCBC-HHHHHHHHHHTCEEECH
T ss_pred             ccccccch-------HhhC-CceEEEECCC-CcCC-HHHHHHHHHCCCEEECH
Confidence            43222222       2233 2345555554 3433 56677888899998754

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.50  E-value=0.00081  Score=52.83  Aligned_cols=64  Identities=16%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChHH--HH----HHHHc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDPL--VD----KFFML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~~--~~----~~~~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      .||+|+|+ |++|++++..|+....       ++.++|.++..  ++    .+.+.      .+...++..++++++|+|
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advV  104 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIA  104 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEE
Confidence            39999996 9999999998886542       78999997642  22    12221      123456778889999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      |++-
T Consensus       105 vi~a  108 (345)
T 4h7p_A          105 IMCG  108 (345)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9975

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.50  E-value=0.00028  Score=55.05  Aligned_cols=87  Identities=17%  Similarity=0.076  Sum_probs=62.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCCceecChhh------hhc---CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGGIRSASPMD------AGK---DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~------~~~---~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+...  |.+|++.++++++.+.+.+.|+...-+..+      .+.   ..|+||-++..+..
T Consensus       172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~  251 (344)
T 2h6e_A          172 PVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEET  251 (344)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChHH
Confidence            4789999999999999999888  999999999999998888878653322211      121   58999999986544


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ++..+       +.++++..++..+
T Consensus       252 ~~~~~-------~~l~~~G~iv~~g  269 (344)
T 2h6e_A          252 TYNLG-------KLLAQEGAIILVG  269 (344)
T ss_dssp             HHHHH-------HHEEEEEEEEECC
T ss_pred             HHHHH-------HHhhcCCEEEEeC
Confidence            44443       3344555555443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.49  E-value=0.00026  Score=55.94  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=63.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c--Ch---hhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A--SP---MDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~--~~---~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+... +  +.   .++....|++|-++..+..++..+
T Consensus       196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~  275 (369)
T 1uuf_A          196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT  275 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHHH
Confidence            47899999999999999999999999999999999988888776432 1  11   122246899999997543444443


Q ss_pred             cCccchhhcCCCCCEEEEcCC
Q 044797           77 FGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st   97 (173)
                             +.++++..++..+.
T Consensus       276 -------~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          276 -------TLLKRDGTMTLVGA  289 (369)
T ss_dssp             -------TTEEEEEEEEECCC
T ss_pred             -------HHhccCCEEEEecc
Confidence                   34555556666544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.48  E-value=0.00023  Score=54.29  Aligned_cols=65  Identities=15%  Similarity=-0.053  Sum_probs=48.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCc--ee-----cChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGI--RS-----ASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~~-----~~~~~~~~~~dvii~~v~   67 (173)
                      +++.|+| .|.+|.++++.|.+.|.+|++++|++++.+.+.+.     ++.  ..     ++..++++++|++|.+.+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCC
Confidence            4678888 99999999999999999999999998887655431     211  11     123455677899998886

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=97.48  E-value=0.002  Score=48.99  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=77.7

Q ss_pred             CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee---ce
Q 044797           45 GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL---ER  121 (173)
Q Consensus        45 g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~---~~  121 (173)
                      |++++++..++++++|++|+-+|-......++   +++.++++.|++|.+++|++|...-..-+.+.+..+....   +.
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa  204 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC  204 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            67788899999999999999999766566777   5788999999999999999998776666666655443321   11


Q ss_pred             ------eeee---ecCHhhHHHHHHHHHhhCCceee---------cCCCch
Q 044797          122 ------MFLI---SSSIDCFTYLFLVKNEFFIDKKV---------NISGQE  154 (173)
Q Consensus       122 ------~~~~---~g~~~~~~~~~~~~~~~g~~~~~---------g~~Gsg  154 (173)
                            -.+.   -.++++.+++..+.+..+...|+         ++.||.
T Consensus       205 VPgt~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~  255 (358)
T 2b0j_A          205 VPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSA  255 (358)
T ss_dssp             CTTTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHH
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHH
Confidence                  1112   23466777888888888776553         666665

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=97.47  E-value=0.00032  Score=55.00  Aligned_cols=41  Identities=12%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC---CeEEEE-cC-ChHHHHHH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG---YKVQAF-EI-SDPLVDKF   41 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~-d~-~~~~~~~~   41 (173)
                      |+.||||+|+|++|..+.+.|.+++   +++.+. |+ +++....+
T Consensus         1 M~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l   46 (339)
T 3b1j_A            1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHL   46 (339)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHH
T ss_pred             CceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHH
Confidence            6789999999999999999998873   676554 44 44444433

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.46  E-value=7.7e-05  Score=58.51  Aligned_cols=65  Identities=9%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-cCCce--------ecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFM-LGGIR--------SASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~-~g~~~--------~~~~~~~~~~~dvii~~v   66 (173)
                      +|+|.|.| .|.+|+.+++.|++. |++|++.+|++++...+.. .+++.        ..+..++++++|+||.+.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A   99 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV   99 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence            57899997 799999999999998 9999999999877655433 22221        122345677899999764

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.46  E-value=0.00073  Score=53.23  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=53.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC-CCeEEEEcC---ChHHHHHHHHc----C-------------------Ccee--cCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS-GYKVQAFEI---SDPLVDKFFML----G-------------------GIRS--ASP   52 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~---~~~~~~~~~~~----g-------------------~~~~--~~~   52 (173)
                      +.||||+|.|++|.-+.+.|.++ .++|...+-   +.+....+.+.    |                   +...  .++
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp   96 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDP   96 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCG
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCCh
Confidence            46999999999999999999887 578765542   23322222111    0                   0111  134


Q ss_pred             hhhh---cCCCEEEEeccChhhhhhhhcCccchhhcCCCCC--EEEEcCC
Q 044797           53 MDAG---KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGA--VIILQST   97 (173)
Q Consensus        53 ~~~~---~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~--~ii~~st   97 (173)
                      ++.-   .++|+||.|+|.... .+..      ..+++.|.  .|||.++
T Consensus        97 ~~i~w~~~~vDvV~eatg~~~s-~e~a------~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           97 AEIPWGASGAQIVCESTGVFTT-EEKA------SLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCS-HHHH------GGGGTTTCSEEEESSCC
T ss_pred             HHCCcccCCCCEEEECCCchhh-HHHH------HHHHHcCCcEEEEeCCC
Confidence            4321   479999999985432 2222      23455666  7787765

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.44  E-value=0.00043  Score=53.88  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh----cCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG----KDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~----~~~dvii~~v~~~~~~~   73 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+...-     +..+.+    ...|+++.++..+..++
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~  247 (340)
T 3s2e_A          168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFS  247 (340)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHH
Confidence            478899999999999999999999999999999999988888864321     222222    25789998887555544


Q ss_pred             hhh
Q 044797           74 DIF   76 (173)
Q Consensus        74 ~v~   76 (173)
                      ..+
T Consensus       248 ~~~  250 (340)
T 3s2e_A          248 QAI  250 (340)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.44  E-value=0.00049  Score=55.36  Aligned_cols=108  Identities=12%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeE-EEEcCC----------hHHHHHHHHc-C------CceecChhhh-hcCCCEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKV-QAFEIS----------DPLVDKFFML-G------GIRSASPMDA-GKDVSALV   63 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V-~~~d~~----------~~~~~~~~~~-g------~~~~~~~~~~-~~~~dvii   63 (173)
                      ++|.|.|.|++|+..++.|.+.|.+| .+.|.+          .+.+.++.+. |      .+.. +.++. -.+||+.+
T Consensus       222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~DIli  300 (424)
T 3k92_A          222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDCDILV  300 (424)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccccEEe
Confidence            57999999999999999999999986 577876          5666555443 2      1222 33443 35799999


Q ss_pred             EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      -|...+....+.       .+.+ .-++|+...+ .|. +.+..+.|.++|+.|+.+.
T Consensus       301 PcA~~n~I~~~~-------a~~l-~ak~V~EgAN-~p~-t~eA~~iL~~rGI~~~PD~  348 (424)
T 3k92_A          301 PAAISNQITAKN-------AHNI-QASIVVERAN-GPT-TIDATKILNERGVLLVPDI  348 (424)
T ss_dssp             ECSCSSCBCTTT-------GGGC-CCSEEECCSS-SCB-CHHHHHHHHHTTCEEECHH
T ss_pred             ecCcccccChhh-------Hhhc-CceEEEcCCC-CCC-CHHHHHHHHHCCCEEECch
Confidence            887643222222       1223 3345555444 443 3566788889999988653

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.43  E-value=9.3e-05  Score=58.50  Aligned_cols=89  Identities=10%  Similarity=-0.001  Sum_probs=53.4

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCC-CeEEE-EcCCh--HHHHHHH-----------HcCCceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSG-YKVQA-FEISD--PLVDKFF-----------MLGGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~-~d~~~--~~~~~~~-----------~~g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +||+|+| .|..|.-+.+.|.++- .++.. ..++.  .+.....           ...........+.++++|++|+|+
T Consensus         8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~a~   87 (359)
T 4dpk_A            8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPL   87 (359)
T ss_dssp             EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEECC
T ss_pred             CeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEECC
Confidence            5899999 6999999999887755 35543 33322  2222210           001222221223457899999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      |.... .+..      ..++..|..+||.|+-
T Consensus        88 p~~~s-~~~a------~~~~~~G~~vIDlSa~  112 (359)
T 4dpk_A           88 PQGAA-GPVE------EQFAKEGFPVISNSPD  112 (359)
T ss_dssp             CTTTH-HHHH------HHHHHTTCEEEECSST
T ss_pred             ChHHH-HHHH------HHHHHCCCEEEEcCCC
Confidence            96543 3333      1234678899999863

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.43  E-value=9.3e-05  Score=58.50  Aligned_cols=89  Identities=10%  Similarity=-0.001  Sum_probs=53.4

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCC-CeEEE-EcCCh--HHHHHHH-----------HcCCceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSG-YKVQA-FEISD--PLVDKFF-----------MLGGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~-~d~~~--~~~~~~~-----------~~g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +||+|+| .|..|.-+.+.|.++- .++.. ..++.  .+.....           ...........+.++++|++|+|+
T Consensus         8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~a~   87 (359)
T 4dpl_A            8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPL   87 (359)
T ss_dssp             EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEECC
T ss_pred             CeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEECC
Confidence            5899999 6999999999887755 35543 33322  2222210           001222221223457899999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      |.... .+..      ..++..|..+||.|+-
T Consensus        88 p~~~s-~~~a------~~~~~~G~~vIDlSa~  112 (359)
T 4dpl_A           88 PQGAA-GPVE------EQFAKEGFPVISNSPD  112 (359)
T ss_dssp             CTTTH-HHHH------HHHHHTTCEEEECSST
T ss_pred             ChHHH-HHHH------HHHHHCCCEEEEcCCC
Confidence            96543 3333      1234678899999863

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.43  E-value=0.00031  Score=55.22  Aligned_cols=66  Identities=18%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec------Chhhhh-cCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA------SPMDAG-KDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~-~~~dvii~~v~~   68 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+...-      +..+.+ ...|++|-++..
T Consensus       181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~  253 (360)
T 1piw_A          181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  253 (360)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence            479999999999999999999999999999999998888877764321      222222 368999999975

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.42  E-value=0.0005  Score=52.92  Aligned_cols=65  Identities=17%  Similarity=0.094  Sum_probs=48.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------cCCce--------ecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------LGGIR--------SASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------~g~~~--------~~~~~~~~~~~dvii~~v   66 (173)
                      ++|.|.|+ |.+|+.+++.|++.|++|++.+|++++.+.+.+       .++..        ..+..++++++|+||.+.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A   91 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEeC
Confidence            57888876 999999999999999999999999877654432       12221        123345566899999876


Q ss_pred             c
Q 044797           67 S   67 (173)
Q Consensus        67 ~   67 (173)
                      .
T Consensus        92 ~   92 (342)
T 1y1p_A           92 S   92 (342)
T ss_dssp             C
T ss_pred             C
Confidence            3

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.42  E-value=0.00061  Score=53.26  Aligned_cols=64  Identities=17%  Similarity=0.144  Sum_probs=47.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCC--e-----EEEEcCCh--HHHH----HHHHcC------CceecChhhhhcCCCEE
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGY--K-----VQAFEISD--PLVD----KFFMLG------GIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~--~-----V~~~d~~~--~~~~----~~~~~g------~~~~~~~~~~~~~~dvi   62 (173)
                      +||.|+| +|.+|++++..|...+.  +     +.++|+++  ++++    .+.+..      +...++..+.++++|+|
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV   83 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence            6899999 89999999999998775  5     99999975  2332    122211      23345667889999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      |++.
T Consensus        84 vitA   87 (333)
T 5mdh_A           84 ILVG   87 (333)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9975

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.41  E-value=0.00069  Score=53.51  Aligned_cols=87  Identities=10%  Similarity=0.060  Sum_probs=63.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhhc--------CCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAGK--------DVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~~--------~~dvii~~v~~   68 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...-     +..+.+.        ..|+||-++..
T Consensus       184 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~  263 (370)
T 4ej6_A          184 STVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGV  263 (370)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCC
Confidence            478899999999999999999998 899999999999888887865321     2222222        47999999875


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +..++..+       ..++++..++..+
T Consensus       264 ~~~~~~~~-------~~l~~~G~vv~~G  284 (370)
T 4ej6_A          264 AETVKQST-------RLAKAGGTVVILG  284 (370)
T ss_dssp             HHHHHHHH-------HHEEEEEEEEECS
T ss_pred             HHHHHHHH-------HHhccCCEEEEEe
Confidence            55444443       3455555666554

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.40  E-value=0.0005  Score=56.31  Aligned_cols=64  Identities=9%  Similarity=0.206  Sum_probs=46.2

Q ss_pred             CeEEEEeCChhhHH--HHHHHHH------CCCeEEEEcCChHHHHHHH--------HcC----CceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVD--MAASLIR------SGYKVQAFEISDPLVDKFF--------MLG----GIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~--ia~~l~~------~g~~V~~~d~~~~~~~~~~--------~~g----~~~~~~~~~~~~~~dvi   62 (173)
                      |||+|||.|..|..  +...++.      .+.++..+|.++++++...        ..+    +..+++.++++++||+|
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V   80 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI   80 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence            59999999998755  3333432      1347999999998875421        122    33567889999999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      |++.
T Consensus        81 i~~~   84 (477)
T 3u95_A           81 INTA   84 (477)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            9986

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.40  E-value=0.0017  Score=52.33  Aligned_cols=66  Identities=11%  Similarity=0.059  Sum_probs=44.7

Q ss_pred             CCeEEEEeCChhhH-HHHHHHHH--C---CCeEEEEcCChHHHHHHHHc-------CCc--eecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVGLDEYSV-DMAASLIR--S---GYKVQAFEISDPLVDKFFML-------GGI--RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG~G~mG~-~ia~~l~~--~---g~~V~~~d~~~~~~~~~~~~-------g~~--~~~~~~~~~~~~dvii~~v   66 (173)
                      ++||+|||+|..-. .++..|..  .   +.+|.++|+++++++...+.       ..+  .+.+..+++++||+||++.
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita   81 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF   81 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence            47999999998522 22234454  2   46899999999886542211       122  3456678899999999998


Q ss_pred             c
Q 044797           67 S   67 (173)
Q Consensus        67 ~   67 (173)
                      .
T Consensus        82 g   82 (417)
T 1up7_A           82 R   82 (417)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.40  E-value=0.00014  Score=54.84  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |+|.|.|. |.+|+.+++.|++.  |++|++.+|++++.+.+...++..       ..+..++++++|+||.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            47888875 99999999999998  999999999988776665444432       1234466788999998764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.39  E-value=0.0014  Score=51.00  Aligned_cols=74  Identities=15%  Similarity=0.109  Sum_probs=55.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCceec----Chhh----hh--cCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIRSA----SPMD----AG--KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~----~~~~----~~--~~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+... |.+|++.++++++.+.+++.|+...-    +..+    ..  ...|+++-++..+..
T Consensus       173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~  252 (345)
T 3jv7_A          173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQST  252 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHH
Confidence            4688999999999999988877 78999999999999998888865321    1111    11  168999999986544


Q ss_pred             hhhhh
Q 044797           72 IDDIF   76 (173)
Q Consensus        72 ~~~v~   76 (173)
                      ++..+
T Consensus       253 ~~~~~  257 (345)
T 3jv7_A          253 IDTAQ  257 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00081  Score=52.50  Aligned_cols=88  Identities=14%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee------cChhhhhc-----CCCEEEEeccChh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS------ASPMDAGK-----DVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~~~~~~~-----~~dvii~~v~~~~   70 (173)
                      .+|.|+|+ |.+|..+++.+...|.+|++.++++++.+.+.+.|....      .+..+.+.     ..|++|.++..+.
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~  250 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEA  250 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHH
Confidence            46889998 899999999999999999999999998887777765321      12222222     5799999987544


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .++..+       +.++++..++..+.
T Consensus       251 ~~~~~~-------~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          251 AIEAST-------RYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHHHT-------TSEEEEEEEEECCC
T ss_pred             HHHHHH-------HHHhcCCEEEEEeC
Confidence            444433       34455555555543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.38  E-value=0.00058  Score=53.71  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=61.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhhh------cCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDAG------KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~~------~~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+... +    +..+.+      ...|+++-++. +..
T Consensus       191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~~~  269 (363)
T 3uog_A          191 DRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-GAG  269 (363)
T ss_dssp             CEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-SSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-hHH
Confidence            47899999999999999999999999999999999988888776432 1    122211      15899999987 344


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +...+       ..++++..++..+
T Consensus       270 ~~~~~-------~~l~~~G~iv~~G  287 (363)
T 3uog_A          270 LGQSL-------KAVAPDGRISVIG  287 (363)
T ss_dssp             HHHHH-------HHEEEEEEEEEEC
T ss_pred             HHHHH-------HHhhcCCEEEEEe
Confidence            44333       3445555555554

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.37  E-value=0.00056  Score=52.95  Aligned_cols=64  Identities=9%  Similarity=0.076  Sum_probs=46.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcC--ChHHHHH----HHH---c---CCceec---ChhhhhcCCCEEEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEI--SDPLVDK----FFM---L---GGIRSA---SPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~--~~~~~~~----~~~---~---g~~~~~---~~~~~~~~~dvii~   64 (173)
                      |||.|+|+ |.+|++++..|...|.  ++.++|+  ++++.+.    +.+   .   ......   +..++++++|+||.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            49999999 9999999999998874  6889999  7654432    211   1   122222   24778999999999


Q ss_pred             ec
Q 044797           65 VI   66 (173)
Q Consensus        65 ~v   66 (173)
                      +.
T Consensus        81 ~A   82 (313)
T 1hye_A           81 TS   82 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.36  E-value=0.00038  Score=56.08  Aligned_cols=107  Identities=13%  Similarity=0.064  Sum_probs=63.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCCh---------------HHHHHHHHc-C-------CceecChhhh-hc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISD---------------PLVDKFFML-G-------GIRSASPMDA-GK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~---------------~~~~~~~~~-g-------~~~~~~~~~~-~~   57 (173)
                      ++|.|.|.|++|+..++.|.+.|.+|+ +.|.++               +.+.++.+. +       .+.. +.++. -.
T Consensus       213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~  291 (421)
T 2yfq_A          213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK  291 (421)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence            589999999999999999999999887 778883               445444432 2       1111 12232 24


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +||+++-|...+....+-.       +.+ ..++|+...+ .|.+ .+..+.+.++|+.|+.+
T Consensus       292 ~~DIliP~A~~n~i~~~~A-------~~l-~ak~VvEgAN-~P~t-~ea~~il~~~GI~~~Pd  344 (421)
T 2yfq_A          292 EYDIIVPAALENVITGERA-------KTI-NAKLVCEAAN-GPTT-PEGDKVLTERGINLTPD  344 (421)
T ss_dssp             ---CEEECSCSSCSCHHHH-------TTC-CCSEEECCSS-SCSC-HHHHHHHHHHTCEEECH
T ss_pred             CccEEEEcCCcCcCCcccH-------HHc-CCeEEEeCCc-cccC-HHHHHHHHHCCCEEECh
Confidence            7999999876443222222       223 4556665554 3433 45667777889988754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.35  E-value=0.00068  Score=53.03  Aligned_cols=74  Identities=15%  Similarity=0.159  Sum_probs=55.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-----hhhh----h--cCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-----PMDA----G--KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-----~~~~----~--~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+     ..+.    .  ...|+++-++..+.
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~  247 (352)
T 3fpc_A          168 DTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVH  247 (352)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChH
Confidence            468999999999999999999998 8999999999998888888653222     1121    1  14899999987654


Q ss_pred             hhhhhh
Q 044797           71 QIDDIF   76 (173)
Q Consensus        71 ~~~~v~   76 (173)
                      .+...+
T Consensus       248 ~~~~~~  253 (352)
T 3fpc_A          248 TFAQAV  253 (352)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=97.34  E-value=0.00051  Score=54.58  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=29.2

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC---CeEEEE-cC-ChHHH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG---YKVQAF-EI-SDPLV   38 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~-d~-~~~~~   38 (173)
                      |+.||||+|+|++|..+.+.|.+++   ++|.+. |+ +++..
T Consensus         1 M~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~   43 (380)
T 2d2i_A            1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTA   43 (380)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHH
T ss_pred             CCcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHH
Confidence            6789999999999999999998763   676654 44 44444

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.33  E-value=0.00065  Score=52.67  Aligned_cols=66  Identities=9%  Similarity=-0.036  Sum_probs=47.4

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChH----HHHHHHH-------cCCce-------ecChhhhhcCCCEE
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDP----LVDKFFM-------LGGIR-------SASPMDAGKDVSAL   62 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~-------~g~~~-------~~~~~~~~~~~dvi   62 (173)
                      +++|.|.| .|.+|+.+++.|++.|++|++.+|++.    ..+.+..       .++..       ..+..++++++|+|
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V  104 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHV  104 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEE
Confidence            47899997 699999999999999999999998543    3333332       22221       12345667789999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |.+..
T Consensus       105 ih~A~  109 (351)
T 3ruf_A          105 LHQAA  109 (351)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            98864

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.33  E-value=0.00014  Score=55.41  Aligned_cols=58  Identities=12%  Similarity=-0.079  Sum_probs=42.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      |||.|.|+ |.+|+.+++.|.+.||+|++..|++++.+      +.......+.++++|.|+-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence            68999976 99999999999999999999999865311      111111234467889888754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.33  E-value=0.00069  Score=53.65  Aligned_cols=87  Identities=10%  Similarity=-0.017  Sum_probs=62.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCcee-c-C---hhh---hh------cCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGIRS-A-S---PMD---AG------KDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~-~-~---~~~---~~------~~~dvii~~v~   67 (173)
                      .+|.|+|+|.+|...++.+...| .+|++.++++++.+.+.+.|+... + +   ..+   .+      ...|+||-++.
T Consensus       197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g  276 (380)
T 1vj0_A          197 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATG  276 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCC
Confidence            47899999999999999999999 699999999999998888886432 1 1   111   11      15899999987


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .+..+...+       +.++++..++..+
T Consensus       277 ~~~~~~~~~-------~~l~~~G~iv~~G  298 (380)
T 1vj0_A          277 DSRALLEGS-------ELLRRGGFYSVAG  298 (380)
T ss_dssp             CTTHHHHHH-------HHEEEEEEEEECC
T ss_pred             CHHHHHHHH-------HHHhcCCEEEEEe
Confidence            544444443       3345555555554

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.33  E-value=0.00022  Score=58.12  Aligned_cols=88  Identities=15%  Similarity=0.073  Sum_probs=54.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-C---eEEEEcCChHHHHHHHHcCCce-----ecC-----hhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-Y---KVQAFEISDPLVDKFFMLGGIR-----SAS-----PMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~---~V~~~d~~~~~~~~~~~~g~~~-----~~~-----~~~~~~~~dvii~~v~~   68 (173)
                      +||.|||+|.||+.++..+.++. +   +|++.|++....+.....|.+.     ..+     ..+++++.|+|+.+.+.
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s~~   93 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSIG   93 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECCcc
Confidence            68999999999999999988754 4   6888887755432222223322     122     22345556888876653


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      . ....++      ...+..|..++|++.
T Consensus        94 ~-~~l~Im------~acleaGv~YlDTa~  115 (480)
T 2ph5_A           94 I-SSLALI------ILCNQKGALYINAAT  115 (480)
T ss_dssp             S-CHHHHH------HHHHHHTCEEEESSC
T ss_pred             c-cCHHHH------HHHHHcCCCEEECCC
Confidence            3 222333      234456777888764

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=97.32  E-value=0.00068  Score=54.54  Aligned_cols=108  Identities=18%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHHHHc-CC------------ceecChhhhh-c
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKFFML-GG------------IRSASPMDAG-K   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g~------------~~~~~~~~~~-~   57 (173)
                      ++|.|.|.|++|+..++.|.+.|.+|+ +.|.          +++.+.++.+. +.            ....+.++.+ .
T Consensus       211 k~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~  290 (421)
T 1v9l_A          211 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL  290 (421)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcC
Confidence            589999999999999999999999876 6776          45555544332 11            1111233443 4


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +||+.+-|...+....+       -.+.++ =++|+... ..|.+ .+..+.|.++|+.|+.+
T Consensus       291 ~~Dil~P~A~~~~I~~~-------~a~~l~-ak~V~EgA-N~p~t-~~a~~~l~~~Gi~~~PD  343 (421)
T 1v9l_A          291 DVDIFVPAAIENVIRGD-------NAGLVK-ARLVVEGA-NGPTT-PEAERILYERGVVVVPD  343 (421)
T ss_dssp             CCSEEEECSCSSCBCTT-------TTTTCC-CSEEECCS-SSCBC-HHHHHHHHTTTCEEECH
T ss_pred             CccEEEecCcCCccchh-------hHHHcC-ceEEEecC-CCcCC-HHHHHHHHHCCCEEeCh
Confidence            79999988753322111       122332 24444444 34543 56678888999998764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.30  E-value=0.0031  Score=50.25  Aligned_cols=92  Identities=16%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhh----h--cCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDA----G--KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~----~--~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-     +..+.    .  ...|++|-++..+.
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~  294 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQ  294 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcH
Confidence            478999999999999999999998 899999999999988888865321     11121    1  25899999998652


Q ss_pred             -hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 -QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 -~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                       .....+   +-+...++++..++..+.
T Consensus       295 ~~~~~~~---~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          295 LVWPQIE---EVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHHHH---HHHHHCSCCCCEEEECSC
T ss_pred             HHHHHHH---HHHHhccCCCcEEEEeCC
Confidence             222222   111122366666666543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.30  E-value=0.0027  Score=49.50  Aligned_cols=87  Identities=14%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCcee-c----Ch----hhhh--cCCCEEEEeccCh
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIRS-A----SP----MDAG--KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~----~~~~--~~~dvii~~v~~~   69 (173)
                      .+|.|+|+| .+|...++.+... |.+|++.++++++.+.+.+.|.... +    +.    .+..  ...|++|-++..+
T Consensus       172 ~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  251 (347)
T 1jvb_A          172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSE  251 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCH
T ss_pred             CEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCCCH
Confidence            468899999 9999999999998 9999999999999888777665321 1    11    1222  3579999998754


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ..++..+       +.++++..++..+
T Consensus       252 ~~~~~~~-------~~l~~~G~iv~~g  271 (347)
T 1jvb_A          252 KTLSVYP-------KALAKQGKYVMVG  271 (347)
T ss_dssp             HHHTTGG-------GGEEEEEEEEECC
T ss_pred             HHHHHHH-------HHHhcCCEEEEEC
Confidence            3443333       4455555666554

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.29  E-value=0.00039  Score=54.59  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-HcCCcee---cCh---hhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-MLGGIRS---ASP---MDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~---~~~---~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|+...   .+.   .+.....|++|-++..+..++..
T Consensus       182 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~  261 (357)
T 2cf5_A          182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPY  261 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence            4789999999999999999999999999999999988777 6675422   121   12234689999999754334444


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +       +.++++..++..+
T Consensus       262 ~-------~~l~~~G~iv~~G  275 (357)
T 2cf5_A          262 L-------SLLKLDGKLILMG  275 (357)
T ss_dssp             H-------TTEEEEEEEEECS
T ss_pred             H-------HHhccCCEEEEeC
Confidence            3       3344555555543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=97.29  E-value=0.00031  Score=55.09  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHH---C-CCeEEEE-cC-ChHHHHHHH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIR---S-GYKVQAF-EI-SDPLVDKFF   42 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~---~-g~~V~~~-d~-~~~~~~~~~   42 (173)
                      |+.||||+|.|++|..+.+.|.+   + ..++... ++ +++....+.
T Consensus         1 M~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll   48 (339)
T 2x5j_O            1 MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLL   48 (339)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHH
T ss_pred             CCeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHh
Confidence            66899999999999999999987   5 5677655 43 444444433

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.28  E-value=0.00048  Score=54.24  Aligned_cols=88  Identities=14%  Similarity=-0.002  Sum_probs=62.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHcCCceec--Chhhhh----cCCCEEEEeccChhhh-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD---PLVDKFFMLGGIRSA--SPMDAG----KDVSALVVVISHVDQI-   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~---~~~~~~~~~g~~~~~--~~~~~~----~~~dvii~~v~~~~~~-   72 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.++++   ++.+.+.+.|+...+  +..+.+    ...|++|-++..+..+ 
T Consensus       182 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  261 (366)
T 2cdc_A          182 RKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNIL  261 (366)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence            478999999999999999999999999999998   888777777765441  111111    3589999999865444 


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +..+       +.++++..++..+.
T Consensus       262 ~~~~-------~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          262 GNVI-------PLLGRNGVLGLFGF  279 (366)
T ss_dssp             HHHG-------GGEEEEEEEEECSC
T ss_pred             HHHH-------HHHhcCCEEEEEec
Confidence            4443       33455556665543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.27  E-value=0.00032  Score=52.73  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            4 KVGFVGL-DEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      +|.|.|. |.+|+.+++.|.+.  |++|++.+|++++.+.+...++..       .++..++++++|+||.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5778875 99999999999998  999999999987766555444432       1234466788999998764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.27  E-value=0.00083  Score=52.90  Aligned_cols=87  Identities=15%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-c----Chhhhhc-----CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-A----SPMDAGK-----DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~~~-----~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+... +    +..+.+.     ..|+||-++..+..
T Consensus       192 ~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~  271 (371)
T 1f8f_A          192 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEI  271 (371)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHH
Confidence            478999999999999999998998 69999999999988887776422 1    1222221     47999999975444


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ++..+       ..++++..++..+
T Consensus       272 ~~~~~-------~~l~~~G~iv~~G  289 (371)
T 1f8f_A          272 LKQGV-------DALGILGKIAVVG  289 (371)
T ss_dssp             HHHHH-------HTEEEEEEEEECC
T ss_pred             HHHHH-------HHHhcCCEEEEeC
Confidence            44443       3445555555554

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=97.26  E-value=0.00044  Score=53.39  Aligned_cols=66  Identities=12%  Similarity=-0.074  Sum_probs=46.1

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHH------HHHHH-cCCc-------eecChhhhhcCCCEEEEe
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLV------DKFFM-LGGI-------RSASPMDAGKDVSALVVV   65 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~------~~~~~-~g~~-------~~~~~~~~~~~~dvii~~   65 (173)
                      |.++|.|.| +|.+|+.+++.|++.|++|.+..|++++.      ..+.. .++.       -..+..++++++|+||.+
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   87 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV   87 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence            457898997 79999999999999999999888876532      12211 1221       122345677889999976


Q ss_pred             c
Q 044797           66 I   66 (173)
Q Consensus        66 v   66 (173)
                      .
T Consensus        88 A   88 (338)
T 2rh8_A           88 A   88 (338)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.25  E-value=0.00019  Score=56.64  Aligned_cols=66  Identities=14%  Similarity=0.027  Sum_probs=47.6

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      +|+|.|.|+ |.+|+.+++.|++.|++|++.+|++++.......++..       ..+..++++++|+||.+..
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            578999976 99999999999999999999999865432222122221       1224466778999998764

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.25  E-value=0.00019  Score=54.71  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHC--CCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhc--CCCEEEEecc
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRS--GYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGK--DVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~--~~dvii~~v~   67 (173)
                      |.|+|.|.|. |.+|+.+++.|++.  |++|++.+|++++.+ +.. ++..       ..+..++++  ++|+||.+..
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~-~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~   77 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VVN-SGPFEVVNALDFNQIEHLVEVHKITDIYLMAA   77 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HHH-SSCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-ccC-CCceEEecCCCHHHHHHHHhhcCCCEEEECCc
Confidence            7789999976 99999999999998  899999998865532 211 2211       112345566  7999998864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.24  E-value=0.0025  Score=53.07  Aligned_cols=67  Identities=6%  Similarity=-0.080  Sum_probs=52.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCcee----cChh---hh-hcCCCEEEEeccCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRS----ASPM---DA-GKDVSALVVVISHV   69 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~----~~~~---~~-~~~~dvii~~v~~~   69 (173)
                      .++|.|+|.|.+|..+++.|.+.|++|++.|.++++.+.+.+. +....    .+.+   ++ ++++|.+++ ++++
T Consensus       127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D  202 (565)
T 4gx0_A          127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSD  202 (565)
T ss_dssp             CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCH
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCc
Confidence            3579999999999999999999999999999999999988887 65431    1211   11 567898887 5544

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.24  E-value=0.00057  Score=53.59  Aligned_cols=66  Identities=9%  Similarity=0.001  Sum_probs=48.1

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHH--HHHHHc-CCce--ec---C---hhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLV--DKFFML-GGIR--SA---S---PMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~--~~~~~~-g~~~--~~---~---~~~~~~~~dvii~~v~   67 (173)
                      .++|.|.| .|.+|+.+++.|++.|++|++.+|++++.  +.+.+. ++..  .+   +   ..++++++|+||.+..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~   82 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   82 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence            36799997 59999999999999999999999987654  334332 2211  11   2   3456788999997764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.24  E-value=0.00026  Score=52.06  Aligned_cols=65  Identities=12%  Similarity=0.016  Sum_probs=47.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v~   67 (173)
                      ++|.|.| .|.+|.++++.|++.|+  +|++.+|++++.+.....++.       -..+..++++++|+||.+..
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            5788887 79999999999999999  999999987654322111221       12234566778999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.23  E-value=0.00048  Score=55.71  Aligned_cols=112  Identities=11%  Similarity=0.035  Sum_probs=67.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH--HHHHHcCCcee--cChhhhhcCCCEEEEec--c-Chhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV--DKFFMLGGIRS--ASPMDAGKDVSALVVVI--S-HVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~--~~~~~~g~~~~--~~~~~~~~~~dvii~~v--~-~~~~~~~v   75 (173)
                      +||.|||+|..|.+.|+.|.+.|++|+++|......  ..+. .|++..  ....+.++++|.||.+.  | +.+.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~~a   84 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAA   84 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHHHH
Confidence            689999999999999999999999999999764321  2344 566653  21345666899888874  2 11222211


Q ss_pred             h------cCccchh-hcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCce
Q 044797           76 F------FGHEGVL-KGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        76 ~------~~~~~i~-~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      .      ..+.++. ..++ ..+| |.-|.++..+..-+...|+..|..
T Consensus        85 ~~~~~~v~~~~~~~~~~~~-~~vI~VTGTnGKTTT~~ml~~iL~~~g~~  132 (439)
T 2x5o_A           85 ADAGIEIVGDIELFCREAQ-APIVAITGSNGKSTVTTLVGEMAKAAGVN  132 (439)
T ss_dssp             HHTTCEEECHHHHHHHHCC-SCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             HHCCCcEEEHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence            1      0000111 1232 3444 344455555667777777776654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.22  E-value=0.00058  Score=48.87  Aligned_cols=44  Identities=14%  Similarity=0.028  Sum_probs=38.0

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG   46 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~   46 (173)
                      ++|.|+| .|.+|..+++.+...|.+|++.++++++.+.+.+.|.
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~   84 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV   84 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred             CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence            4678888 6999999999999999999999999998877766664

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.21  E-value=0.00026  Score=59.00  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--C-CceecChhh-hhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--G-GIRSASPMD-AGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g-~~~~~~~~~-~~~~~dvii~~v~~~~   70 (173)
                      ++|.|+|+|++|..+++.|.+.|++|.+.|+++++.+.+...  | ..-.+.+.+ -++++|.++.+++++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~  420 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS  420 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence            478999999999999999999999999999999886554210  1 011111222 2568999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.20  E-value=0.00035  Score=55.02  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +|||.|||+|..|..+|..|.++|++|+++++++
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4799999999999999999999999999998764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.20  E-value=0.00056  Score=52.33  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=60.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecCh------hhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASP------MDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~------~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|+...-+.      .+.+...|++|- +.. ..++..
T Consensus       127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~~  204 (302)
T 1iz0_A          127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVEES  204 (302)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHHHH
Confidence            47889998 999999999999999999999999999888877776532221      222357899999 764 333333


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +       +.++++..++..+
T Consensus       205 ~-------~~l~~~G~~v~~g  218 (302)
T 1iz0_A          205 L-------GLLAHGGRLVYIG  218 (302)
T ss_dssp             H-------TTEEEEEEEEEC-
T ss_pred             H-------HhhccCCEEEEEe
Confidence            3       3455555666554

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.20  E-value=0.00086  Score=52.60  Aligned_cols=86  Identities=13%  Similarity=0.041  Sum_probs=62.1

Q ss_pred             CeEEEEeCChhhHHH-HHHH-HHCCCe-EEEEcCChH---HHHHHHHcCCceecChh--hh--hc----CCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDM-AASL-IRSGYK-VQAFEISDP---LVDKFFMLGGIRSASPM--DA--GK----DVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~i-a~~l-~~~g~~-V~~~d~~~~---~~~~~~~~g~~~~~~~~--~~--~~----~~dvii~~v~~   68 (173)
                      .+|.|+|+|.+|... ++.+ ...|.+ |++.+++++   +.+.+.+.|+... +..  ++  +.    ..|+||-++..
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~gg~Dvvid~~g~  252 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYEQMDFIYEATGF  252 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSCCEEEEEECSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCCCCCEEEECCCC
Confidence            579999999999999 9988 888987 999999998   8888888887544 221  11  21    57999999875


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +..++..+       ..++++..++..+
T Consensus       253 ~~~~~~~~-------~~l~~~G~iv~~g  273 (357)
T 2b5w_A          253 PKHAIQSV-------QALAPNGVGALLG  273 (357)
T ss_dssp             HHHHHHHH-------HHEEEEEEEEECC
T ss_pred             hHHHHHHH-------HHHhcCCEEEEEe
Confidence            54444443       3445555666554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.19  E-value=0.00022  Score=53.83  Aligned_cols=58  Identities=10%  Similarity=0.099  Sum_probs=42.3

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEec
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVI   66 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v   66 (173)
                      |.|+|.|.| .|.+|+.+++.|.+.|++|++.+|.+.        .+.-..+..++++  ++|+||.+.
T Consensus         4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------D~~d~~~~~~~~~~~~~d~vi~~a   64 (287)
T 3sc6_A            4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLL--------DITNISQVQQVVQEIRPHIIIHCA   64 (287)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTS--------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEeccccc--------CCCCHHHHHHHHHhcCCCEEEECC
Confidence            556899998 599999999999999999999998431        1121223444555  589999875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.18  E-value=0.00034  Score=55.69  Aligned_cols=94  Identities=13%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh-------HHHHHHH----Hc--CCceecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD-------PLVDKFF----ML--GGIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~-------~~~~~~~----~~--g~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      .||.|+|.|..|.++++.+...|. +|+++|++.       +++..+.    ..  ......++.++++++|++|=+.. 
T Consensus       189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa-  267 (398)
T 2a9f_A          189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA-  267 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS-
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCC-
Confidence            489999999999999999999998 999999873       2122111    11  11124468899999998877654 


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHH
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHM  103 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~  103 (173)
                      |..+.      +++.+.+.++.+|+..|+-.|+..
T Consensus       268 pgl~T------~EmVk~Ma~~pIIfalsNPt~E~~  296 (398)
T 2a9f_A          268 PGVLK------AEWISKMAARPVIFAMANPIPEIY  296 (398)
T ss_dssp             TTCCC------HHHHHTSCSSCEEEECCSSSCSSC
T ss_pred             CCCCC------HHHHHhhCCCCEEEECCCCCccCC
Confidence            33222      234567889999999998666544

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.17  E-value=2.9e-05  Score=58.25  Aligned_cols=64  Identities=14%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC-------ceecChhhhhcCCCEEEEecc
Q 044797            1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG-------IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ||++|.|.|+ |.+|+.+++.|++.|++|++.+|++++..   ..++       .-..+..++++++|+||.+..
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   72 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA---EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG   72 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC---CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc---CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence            7788999976 99999999999999999999999875311   0111       111234466778999998863

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.15  E-value=0.0014  Score=48.25  Aligned_cols=43  Identities=12%  Similarity=0.054  Sum_probs=34.2

Q ss_pred             CCCeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |++|+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            66555555  56899999999999999999999999988776543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.14  E-value=0.00099  Score=52.01  Aligned_cols=73  Identities=11%  Similarity=0.016  Sum_probs=54.4

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec----Chhhhh-----cCCCEEEEeccChhhh
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA----SPMDAG-----KDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~----~~~~~~-----~~~dvii~~v~~~~~~   72 (173)
                      .+|.|+ |+|.+|...++.+...|.+|++.++++++.+.+.+.|+...-    +..+.+     ...|+++-|+..+..+
T Consensus       152 ~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~  231 (346)
T 3fbg_A          152 KTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDMYY  231 (346)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchHHH
Confidence            468899 799999999999999999999999999999988887764322    122222     2579999988744333


Q ss_pred             hhh
Q 044797           73 DDI   75 (173)
Q Consensus        73 ~~v   75 (173)
                      ...
T Consensus       232 ~~~  234 (346)
T 3fbg_A          232 DDM  234 (346)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.14  E-value=0.0022  Score=49.67  Aligned_cols=87  Identities=13%  Similarity=0.028  Sum_probs=60.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee------cChhhhh-----cCCCEEEEeccChh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS------ASPMDAG-----KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~~~~~~-----~~~dvii~~v~~~~   70 (173)
                      .++.|.|+ |.+|..+++.+...|.+|++.++++++.+.+.+.|....      .+..+.+     ...|++|.++.. .
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~  225 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG-E  225 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH-H
T ss_pred             CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh-H
Confidence            46888997 999999999999999999999999999888866665321      1222222     247999988863 3


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+...       .+.++++..++..+.
T Consensus       226 ~~~~~-------~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          226 FLNTV-------LSQMKDFGKIAICGA  245 (333)
T ss_dssp             HHHHH-------HTTEEEEEEEEECCC
T ss_pred             HHHHH-------HHHHhcCCEEEEEec
Confidence            33333       344566666666543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.12  E-value=0.004  Score=48.75  Aligned_cols=88  Identities=8%  Similarity=-0.025  Sum_probs=61.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCce---e---cChhhh---h------cCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIR---S---ASPMDA---G------KDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~---~---~~~~~~---~------~~~dvii~~v   66 (173)
                      .+|.|+|+|.+|...++.++..|.+ |++.++++++.+.+++.+...   .   .+..+.   +      ...|++|-++
T Consensus       181 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~  260 (363)
T 3m6i_A          181 DPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECT  260 (363)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEECC
Confidence            4789999999999999999999987 999999999988777652111   1   011221   1      2589999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ..+..+...+       ..++++..++..+.
T Consensus       261 g~~~~~~~~~-------~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          261 GVESSIAAAI-------WAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCHHHHHHHH-------HHSCTTCEEEECCC
T ss_pred             CChHHHHHHH-------HHhcCCCEEEEEcc
Confidence            8654444443       45667777776643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.12  E-value=0.00082  Score=53.52  Aligned_cols=66  Identities=18%  Similarity=0.000  Sum_probs=51.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec----Ch-hhhh----c--CCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA----SP-MDAG----K--DVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~----~~-~~~~----~--~~dvii~~v~~   68 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...+    +. .+.+    .  ..|++|-++..
T Consensus       187 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          187 SHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            478999999999999999988998 899999999999888887875332    11 2222    1  58999999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.11  E-value=0.0035  Score=50.60  Aligned_cols=45  Identities=16%  Similarity=-0.093  Sum_probs=40.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI   47 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~   47 (173)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       222 ~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~  267 (447)
T 4a0s_A          222 DIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD  267 (447)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC
Confidence            46888998 9999999999999999999999999999988888764

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.11  E-value=0.00092  Score=51.70  Aligned_cols=67  Identities=15%  Similarity=0.056  Sum_probs=46.7

Q ss_pred             CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCCh----------HHHHHHHH---cCCce-------ecChhhhhc--
Q 044797            1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISD----------PLVDKFFM---LGGIR-------SASPMDAGK--   57 (173)
Q Consensus         1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~----------~~~~~~~~---~g~~~-------~~~~~~~~~--   57 (173)
                      |.++|.|.| .|.+|+.+++.|++.|++|++.+|+.          +..+.+.+   .++..       ..+..++++  
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence            788999996 69999999999999999999998743          33333332   12221       112334555  


Q ss_pred             CCCEEEEecc
Q 044797           58 DVSALVVVIS   67 (173)
Q Consensus        58 ~~dvii~~v~   67 (173)
                      ++|+||.+..
T Consensus        81 ~~d~vih~A~   90 (348)
T 1ek6_A           81 SFMAVIHFAG   90 (348)
T ss_dssp             CEEEEEECCS
T ss_pred             CCCEEEECCC
Confidence            6899998764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.10  E-value=0.0024  Score=50.20  Aligned_cols=86  Identities=9%  Similarity=-0.050  Sum_probs=61.0

Q ss_pred             eEEEEe-CChhhHHHHHHHHH-CCCeEEEEcCChHHHHHHHHcCCceec----Chhhhh-----cCCCEEEEeccChhhh
Q 044797            4 KVGFVG-LDEYSVDMAASLIR-SGYKVQAFEISDPLVDKFFMLGGIRSA----SPMDAG-----KDVSALVVVISHVDQI   72 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~----~~~~~~-----~~~dvii~~v~~~~~~   72 (173)
                      +|.|+| +|.+|...++.+.. .|.+|++.++++++.+.+.+.|+...-    +..+.+     ...|+++-|+..+..+
T Consensus       174 ~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~  253 (363)
T 4dvj_A          174 AILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHA  253 (363)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhhH
Confidence            688998 99999999988876 689999999999999988888865322    122222     2579999998744344


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +..+       ..++++..++...
T Consensus       254 ~~~~-------~~l~~~G~iv~~g  270 (363)
T 4dvj_A          254 AEIA-------DLIAPQGRFCLID  270 (363)
T ss_dssp             HHHH-------HHSCTTCEEEECS
T ss_pred             HHHH-------HHhcCCCEEEEEC
Confidence            4333       4456666666553

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=97.10  E-value=0.006  Score=43.71  Aligned_cols=118  Identities=13%  Similarity=0.093  Sum_probs=62.6

Q ss_pred             CCCeEEEE-eC----C---hhhHHHHHH-HHHCCCeEEEEcCChHHHHHHHHcCCc--eecChhhhhcCCCEEEEeccCh
Q 044797            1 MASKVGFV-GL----D---EYSVDMAAS-LIRSGYKVQAFEISDPLVDKFFMLGGI--RSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         1 m~~~Igii-G~----G---~mG~~ia~~-l~~~g~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      |||||.+| |.    |   .+...+++. +.+.|+++..+|...-....+......  ......+.+.++|.||++.|.-
T Consensus         1 mMmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y   80 (197)
T 2vzf_A            1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY   80 (197)
T ss_dssp             CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB
T ss_pred             CCceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc
Confidence            77888777 65    2   345555666 666799998888654333322221111  0111224467899999999842


Q ss_pred             -----hhhhhhhcCccchhhcCCCCCEEEEc-CCCCHHH---HH-HHHHHHhcCCceeeece
Q 044797           70 -----DQIDDIFFGHEGVLKGLQKGAVIILQ-STILPSH---MQ-KLEKTFTGNLTFYILER  121 (173)
Q Consensus        70 -----~~~~~v~~~~~~i~~~l~~g~~ii~~-st~~~~~---~~-~l~~~l~~~g~~~v~~~  121 (173)
                           ..++..+   +.+......|+.+.-. +.+.+..   .. .+...+...|...+...
T Consensus        81 ~~~~p~~lK~~l---d~l~~~~~~gK~~~~~~tgg~~~~~~a~~~~l~~~l~~~g~~~v~~~  139 (197)
T 2vzf_A           81 KASYTGLLKAFL---DILPQFALAGKAALPLATGGSPAHVLALDYGLRPVLHSMGVRHVVQS  139 (197)
T ss_dssp             TTBCCHHHHHHH---TTSCTTTTTTCEEEEEEEESSGGGGGHHHHTHHHHHHTTTCSEECCC
T ss_pred             CCCCCHHHHHHH---HhccccccCCCEEEEEEECCCcchhhHHHHHHHHHHHHcCCEeccce
Confidence                 3445555   2222111234433222 1222222   32 57777877788776654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.08  E-value=0.00099  Score=51.51  Aligned_cols=87  Identities=9%  Similarity=-0.023  Sum_probs=61.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|+| .|.+|...++.+...|.+|++.++++++.+.+.+.|....-     +..+.+      ...|+++-++.. .
T Consensus       142 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-~  220 (325)
T 3jyn_A          142 EIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ-D  220 (325)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG-G
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh-H
Confidence            4688888 89999999999999999999999999999888877754221     111211      258999999874 3


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+...+       ..++++..++..+.
T Consensus       221 ~~~~~~-------~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          221 TWLTSL-------DSVAPRGLVVSFGN  240 (325)
T ss_dssp             GHHHHH-------TTEEEEEEEEECCC
T ss_pred             HHHHHH-------HHhcCCCEEEEEec
Confidence            333333       45566666666643

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.08  E-value=0.0054  Score=45.32  Aligned_cols=40  Identities=15%  Similarity=0.030  Sum_probs=33.1

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      ++-|. |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus        11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   51 (253)
T 3qiv_A           11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAK   51 (253)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            34444 56999999999999999999999999988766543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.0023  Score=48.09  Aligned_cols=41  Identities=15%  Similarity=0.075  Sum_probs=34.0

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      .|+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   46 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIAT   46 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            355555  56899999999999999999999999988766543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.07  E-value=0.0077  Score=45.05  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      .+|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999996 788998764

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.05  E-value=0.00055  Score=54.50  Aligned_cols=89  Identities=10%  Similarity=0.048  Sum_probs=52.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCC-CeEE-EE--cCChH-HHHHHH-----------HcCCceec-ChhhhhcCCCEEEE
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSG-YKVQ-AF--EISDP-LVDKFF-----------MLGGIRSA-SPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g-~~V~-~~--d~~~~-~~~~~~-----------~~g~~~~~-~~~~~~~~~dvii~   64 (173)
                      +||+|+| .|..|.-+.+.|.++- .++. ++  .++.. +.....           .......+ +..+.++++|++|+
T Consensus        20 ~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dvvf~   99 (381)
T 3hsk_A           20 KKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFS   99 (381)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEEE
T ss_pred             cEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCEEEE
Confidence            5899999 6999999999888765 3553 33  23322 222110           01112211 12214678999999


Q ss_pred             eccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        65 ~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      |+|... ..+..   +   .++..|..+||.|+-
T Consensus       100 alp~~~-s~~~~---~---~~~~~G~~VIDlSa~  126 (381)
T 3hsk_A          100 GLDADV-AGDIE---K---SFVEAGLAVVSNAKN  126 (381)
T ss_dssp             CCCHHH-HHHHH---H---HHHHTTCEEEECCST
T ss_pred             CCChhH-HHHHH---H---HHHhCCCEEEEcCCc
Confidence            999543 34443   1   234568889998863

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.05  E-value=0.0012  Score=51.35  Aligned_cols=86  Identities=13%  Similarity=0.020  Sum_probs=58.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-c----Chhhhh-----cCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-A----SPMDAG-----KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~~-----~~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+. .... +    +..+.+     ...|++|-++..+..
T Consensus       166 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  244 (343)
T 2dq4_A          166 KSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAA  244 (343)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHHH
Confidence            478999999999999999999999 999999999887766554 3321 1    222222     258999999876444


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ++..+       +.++++..++..+
T Consensus       245 ~~~~~-------~~l~~~G~iv~~g  262 (343)
T 2dq4_A          245 IHQGL-------MALIPGGEARILG  262 (343)
T ss_dssp             HHHHH-------HHEEEEEEEEECC
T ss_pred             HHHHH-------HHHhcCCEEEEEe
Confidence            44443       3344444555543

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=97.05  E-value=0.0041  Score=50.60  Aligned_cols=111  Identities=12%  Similarity=0.060  Sum_probs=67.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHHHH---c-------------CCceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKFFM---L-------------GGIRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~---~-------------g~~~~~~~~~~   55 (173)
                      ++|.|-|.|++|+..++.|.+.|.+|+ +.|.          +++.++.+.+   .             +.+..+..+-+
T Consensus       253 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~~~~  332 (470)
T 2bma_A          253 QTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPW  332 (470)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSSCCTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecCcCee
Confidence            589999999999999999999999876 6673          5555555433   1             11111111112


Q ss_pred             hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      -.+||+.+-|...+....+-.   +.+   ..++..+|-.++..|.+ .+..+.|.++|+.|+.+
T Consensus       333 ~~~~DI~iPcA~~~~I~~~na---~~l---~~~~ak~V~EgAN~p~T-~eA~~~L~~rGIl~~PD  390 (470)
T 2bma_A          333 GVPCTLAFPCATQNDVDLDQA---KLL---QKNGCILVGEGANMPST-VDAINLFKSNNIIYCPS  390 (470)
T ss_dssp             SSCCSEEEECSSTTCBCSHHH---HHH---HHTTCCEEECCSSSCBC-HHHHHHHHHTTCEEECH
T ss_pred             ecCccEEEeccccCcCCHHHH---HHH---HhcCcEEEEeCCCCCCC-HHHHHHHHHCCcEEECh
Confidence            347999998875332222221   112   12344455555555543 34478888999998764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.03  E-value=0.0061  Score=45.21  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=32.8

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   53 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVA   53 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45555  5689999999999999999999999998876654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.03  E-value=0.0072  Score=46.88  Aligned_cols=88  Identities=15%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCceec-----Chhhh------hcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRSA-----SPMDA------GKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~------~~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+|.+|...++.++..|.. +++.++++++.+.+++.|+...-     +..+.      ....|+++-++..+.
T Consensus       162 ~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~  241 (346)
T 4a2c_A          162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQ  241 (346)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCSHH
T ss_pred             CEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccccc
Confidence            4788999999999999999999976 57889999999988888865321     11222      135789999987655


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .++..+       ..++++..++..+.
T Consensus       242 ~~~~~~-------~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          242 TVELAV-------EIAGPHAQLALVGT  261 (346)
T ss_dssp             HHHHHH-------HHCCTTCEEEECCC
T ss_pred             hhhhhh-------heecCCeEEEEEec
Confidence            554443       45667766666543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.03  E-value=0.006  Score=44.93  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=33.9

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      .|+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   47 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN   47 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            345555  67999999999999999999999999988766543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=97.01  E-value=0.0013  Score=50.77  Aligned_cols=64  Identities=20%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHH---HHHHHc-----C-------CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLV---DKFFML-----G-------GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~---~~~~~~-----g-------~~~~~~~~~~~~~~dvii~~v   66 (173)
                      ++|.|.| +|.+|+.+++.|++.|++|++..|+++..   ..+.+.     +       +.-..+..++++++|+||.+.
T Consensus         6 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A   85 (337)
T 2c29_D            6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVA   85 (337)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECC
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEec
Confidence            6787776 89999999999999999999888887632   222111     1       111223456778899999764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.01  E-value=0.0031  Score=46.96  Aligned_cols=43  Identities=19%  Similarity=0.239  Sum_probs=35.5

Q ss_pred             CCCeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |..|+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   48 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKL   48 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34455566  67899999999999999999999999988776543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.01  E-value=0.0034  Score=46.97  Aligned_cols=45  Identities=18%  Similarity=0.176  Sum_probs=36.5

Q ss_pred             CCCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC
Q 044797            1 MASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG   45 (173)
Q Consensus         1 m~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g   45 (173)
                      |.++|-|- |.+.+|.++|+.|++.|.+|.+.||++++.+.+.+.+
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~   46 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER   46 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            55555555 5788999999999999999999999998887766543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.00  E-value=0.0018  Score=50.22  Aligned_cols=66  Identities=11%  Similarity=-0.014  Sum_probs=47.0

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChH----HHHHHHH-------cCCce-------ecChhhhhcCCCEE
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDP----LVDKFFM-------LGGIR-------SASPMDAGKDVSAL   62 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~-------~g~~~-------~~~~~~~~~~~dvi   62 (173)
                      +|+|.|.|+ |.+|+.+++.|++.|++|++.+|++.    +.+.+.+       .++..       ..+..++++++|+|
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v  106 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYV  106 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEE
Confidence            468999976 99999999999999999999998653    3333321       22221       11234567789999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      |.+..
T Consensus       107 ih~A~  111 (352)
T 1sb8_A          107 LHQAA  111 (352)
T ss_dssp             EECCS
T ss_pred             EECCc
Confidence            98864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.99  E-value=0.0052  Score=45.92  Aligned_cols=40  Identities=10%  Similarity=-0.016  Sum_probs=33.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   53 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAK   53 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence            44455  56889999999999999999999999988766543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.99  E-value=0.0057  Score=46.02  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=34.2

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      .|+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIG   69 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            356677  6799999999999999999999999988776554

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.99  E-value=0.00035  Score=55.38  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             CCeEEEEe-CChhhHHHHH-HHHHCCC---eEEEEcC-ChHH-HHHHHHcCCceec--ChhhhhcCCCEEEEeccChhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAA-SLIRSGY---KVQAFEI-SDPL-VDKFFMLGGIRSA--SPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~-~l~~~g~---~V~~~d~-~~~~-~~~~~~~g~~~~~--~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      |+||+|+| .|.+|..+.+ .|.++++   ++..... +..+ ...+....+...+  ++++ ++++|+||.|+|.. ..
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~-~s   78 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGD-YT   78 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHH-HH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCch-hH
Confidence            36999999 9999999999 5555554   3443332 2211 1111111222222  3344 47899999999843 33


Q ss_pred             hhhhcCccchhhcCCCCC--EEEEcCCC
Q 044797           73 DDIFFGHEGVLKGLQKGA--VIILQSTI   98 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~--~ii~~st~   98 (173)
                      .+..   +   .++..|.  ++||.++.
T Consensus        79 ~~~a---~---~~~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           79 NEIY---P---KLRESGWQGYWIDAASS  100 (367)
T ss_dssp             HHHH---H---HHHHTTCCCEEEECSST
T ss_pred             HHHH---H---HHHHCCCCEEEEcCChh
Confidence            3333   1   2234454  88988753

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.99  E-value=0.00052  Score=56.57  Aligned_cols=63  Identities=17%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +|+|.|.| .|.+|+.+++.|++.|++|++.+|++++.+.+   .....+...++++++|+||.+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v---~~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKR---FWDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCE---ECCTTSCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccce---eecccchhHHhcCCCCEEEECCC
Confidence            46899997 79999999999999999999999987653211   11112334566788999998754

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.98  E-value=0.0038  Score=46.92  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=35.5

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+.+|  |.+.+|.++|+.|++.|.+|.++||+++++++..+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~   49 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQ   49 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            477788  77889999999999999999999999988876543

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.98  E-value=0.0033  Score=46.35  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEE-EeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV-VVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii-~~v~~~~~~~~v~~~~   79 (173)
                      ||+++.|+ |+||+.+.+.....|+++. ++|++.+                 +.++++|++| .+.|  ..+...+   
T Consensus        13 ~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-----------------~~l~~~DVvIDFT~P--~a~~~~~---   70 (228)
T 1vm6_A           13 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFSSP--EALPKTV---   70 (228)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECSCG--GGHHHHH---
T ss_pred             ceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-----------------ccccCCCEEEECCCH--HHHHHHH---
Confidence            68999987 9999999887777888864 6676542                 1124689888 4554  3444433   


Q ss_pred             cchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhcCCceeeeceeeee
Q 044797           80 EGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTGNLTFYILERMFLI  125 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~~g~~~v~~~~~~~  125 (173)
                         ...++.|..++..+|+ +++..+.+.+.. +. +..+-.+.+-+
T Consensus        71 ---~~~~~~g~~~ViGTTG~~~~~~~~l~~~a-~~-~~vv~apNfSl  112 (228)
T 1vm6_A           71 ---DLCKKYRAGLVLGTTALKEEHLQMLRELS-KE-VPVVQAYNFSI  112 (228)
T ss_dssp             ---HHHHHHTCEEEECCCSCCHHHHHHHHHHT-TT-SEEEECSCCCH
T ss_pred             ---HHHHHcCCCEEEeCCCCCHHHHHHHHHHH-hh-CCEEEeccccH
Confidence               1233456667666655 444444555543 33 54444444433

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.98  E-value=0.0053  Score=49.70  Aligned_cols=112  Identities=9%  Similarity=0.108  Sum_probs=65.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEE--------cC---ChHHHHHHHH---------------cCCceecChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF--------EI---SDPLVDKFFM---------------LGGIRSASPMDAG   56 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~--------d~---~~~~~~~~~~---------------~g~~~~~~~~~~~   56 (173)
                      ++|.|-|.|++|...++.|.+.|.+|++.        |.   +.+++.++.+               .+....+..+-+-
T Consensus       236 k~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~~~i~~  315 (450)
T 4fcc_A          236 MRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWS  315 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEETCCGGG
T ss_pred             CEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEecCccccc
Confidence            58999999999999999999999987643        22   3344444332               1333333222334


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      .+||+.+-|...+....+..   +.+.   .++..+|-.+...|.+ .+..+.|.++|+.|+.+.
T Consensus       316 ~~~DI~iPcAl~~~I~~~~a---~~L~---a~g~k~IaEgAN~p~t-~eA~~iL~~rGIl~~PD~  373 (450)
T 4fcc_A          316 VPVDIALPCATQNELDVDAA---HQLI---ANGVKAVAEGANMPTT-IEATELFQQAGVLFAPGK  373 (450)
T ss_dssp             SCCSEEEECSCTTCBCHHHH---HHHH---HTTCCEEECCSSSCBC-HHHHHHHHHTTCEEECHH
T ss_pred             CCccEEeeccccccccHHHH---HHHH---hcCceEEecCCCCCCC-HHHHHHHHHCCCEEEChH
Confidence            57999998876433222222   1221   1233344333333433 344577888999998653

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.98  E-value=0.0017  Score=51.02  Aligned_cols=87  Identities=14%  Similarity=-0.026  Sum_probs=61.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh-----cCCCEEEEeccChhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG-----KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~-----~~~dvii~~v~~~~~   71 (173)
                      .+|.|+| .|.+|...++.+...|.+|++.++++++.+.+.+.|+...-     +..+.+     ...|++|-++.. ..
T Consensus       165 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~  243 (362)
T 2c0c_A          165 KKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-AM  243 (362)
T ss_dssp             CEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-HH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-HH
Confidence            4688889 79999999999999999999999999998888887764321     222222     257999999874 33


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++..+       +.++++..++..+.
T Consensus       244 ~~~~~-------~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          244 FDLAV-------DALATKGRLIVIGF  262 (362)
T ss_dssp             HHHHH-------HHEEEEEEEEECCC
T ss_pred             HHHHH-------HHHhcCCEEEEEeC
Confidence            33333       44555556666543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.97  E-value=0.0022  Score=50.97  Aligned_cols=67  Identities=16%  Similarity=0.002  Sum_probs=52.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-----hhhhh------cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-----PMDAG------KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-----~~~~~------~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. .|++.++++++.+.+++.|+...+.     ..+.+      ...|+||-++..+
T Consensus       187 ~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~  265 (398)
T 1kol_A          187 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE  265 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCCc
Confidence            478999999999999999999998 6999999999999888888753321     12222      2579999998743

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.97  E-value=0.0049  Score=44.96  Aligned_cols=42  Identities=10%  Similarity=-0.027  Sum_probs=34.7

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      +++-|. |.|.+|.++++.|++.|++|.+.+|++++.+.+.+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   44 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC   44 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            345555 568999999999999999999999999988776553

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.96  E-value=0.0023  Score=50.12  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      .||.|+|+|..|+.++++|...|. +++++|.+.
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            589999999999999999999996 788888754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.96  E-value=0.0041  Score=50.71  Aligned_cols=94  Identities=18%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             CeEEEEeCCh----------hhHHHHHHHHHCCCeEEEEcCChHHHH--HHHH-----------cCCceecChhhhhcCC
Q 044797            3 SKVGFVGLDE----------YSVDMAASLIRSGYKVQAFEISDPLVD--KFFM-----------LGGIRSASPMDAGKDV   59 (173)
Q Consensus         3 ~~IgiiG~G~----------mG~~ia~~l~~~g~~V~~~d~~~~~~~--~~~~-----------~g~~~~~~~~~~~~~~   59 (173)
                      +||+|+|+-.          -...+++.|.+.|.+|.+||+.-...+  ....           .++..+++..++++++
T Consensus       330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  409 (467)
T 2q3e_A          330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGA  409 (467)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTC
T ss_pred             CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCC
Confidence            5799999875          778899999999999999999632221  1110           0234556788889999


Q ss_pred             CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797           60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                      |++++++.+++ ++..=  .+.+...++...+|+|.-...
T Consensus       410 d~~vi~t~~~~-f~~~~--~~~~~~~~~~~~~i~D~r~~~  446 (467)
T 2q3e_A          410 HAVVICTEWDM-FKELD--YERIHKKMLKPAFIFDGRRVL  446 (467)
T ss_dssp             SEEEECSCCGG-GGGSC--HHHHHHHSCSSCEEEESSCTT
T ss_pred             cEEEEecCChh-hhcCC--HHHHHHhcCCCCEEEeCCCcC
Confidence            99999998753 43321  123445566666688986654

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=96.96  E-value=0.003  Score=50.30  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=66.7

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCC--CeEE-E-EcCChHHHHHHH-HcCCcee--cC----------------------
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSG--YKVQ-A-FEISDPLVDKFF-MLGGIRS--AS----------------------   51 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g--~~V~-~-~d~~~~~~~~~~-~~g~~~~--~~----------------------   51 (173)
                      |.||+|+|+ |.+|+....-+.++.  ++|. + .+++.+++.+.. +.+....  .+                      
T Consensus         4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~   83 (388)
T 1r0k_A            4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   83 (388)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence            368999999 999999999888763  5654 2 688887765433 3333211  11                      


Q ss_pred             --hhhhhc-CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceee
Q 044797           52 --PMDAGK-DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        52 --~~~~~~-~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v  118 (173)
                        ..++++ .+|+|+.+++.....+.++       .+++.|+.|+..+--.. ..-..+.+..+++|+.++
T Consensus        84 ~~~~el~~~~iDvVV~ai~G~aGl~ptl-------aAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~li  147 (388)
T 1r0k_A           84 DALVEAAMMGADWTMAAIIGCAGLKATL-------AAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLL  147 (388)
T ss_dssp             HHHHHHHTSCCSEEEECCCSGGGHHHHH-------HHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHcCCCCEEEEeCCCHHHHHHHH-------HHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEE
Confidence              112332 2799999997644444333       45678888887543111 112455555666777664

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.96  E-value=0.0018  Score=50.17  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=60.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|+| .|.+|...++.+...|.+|++.++++++.+.+.+.|....-     +..+.+      ...|+++-++.. .
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  228 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK-D  228 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG-G
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh-H
Confidence            4688889 89999999999999999999999999999888887754321     111111      247999999873 3


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .++..+       ..++++..++..+
T Consensus       229 ~~~~~~-------~~l~~~G~iv~~G  247 (334)
T 3qwb_A          229 TFEISL-------AALKRKGVFVSFG  247 (334)
T ss_dssp             GHHHHH-------HHEEEEEEEEECC
T ss_pred             HHHHHH-------HHhccCCEEEEEc
Confidence            333332       3455555665554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.96  E-value=0.0017  Score=50.68  Aligned_cols=65  Identities=8%  Similarity=0.009  Sum_probs=48.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHC-CC-eEEEEcCChHHHHHHHHc----CCce-------ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRS-GY-KVQAFEISDPLVDKFFML----GGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~-g~-~V~~~d~~~~~~~~~~~~----g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      ++|.|.| .|.+|+.+++.|++. |+ +|++++|++++.+.+.+.    ++..       ..+..++++++|+||.+..
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence            6788886 699999999999998 97 999999998877655431    2211       1233456778999998863

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.95  E-value=0.0018  Score=50.26  Aligned_cols=87  Identities=14%  Similarity=0.050  Sum_probs=61.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-HHcCCceec-----Chhhhh-----cCCCEEEEeccChh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKF-FMLGGIRSA-----SPMDAG-----KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~-----~~~~~~-----~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+ .+.|+...-     +..+.+     ...|++|-++. ..
T Consensus       151 ~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~  229 (336)
T 4b7c_A          151 ETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG-GE  229 (336)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC-cc
Confidence            46888898 9999999999999999999999999999888 666754221     112222     24899998887 33


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+...       ...++++..++..+.
T Consensus       230 ~~~~~-------~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          230 ILDTV-------LTRIAFKARIVLCGA  249 (336)
T ss_dssp             HHHHH-------HTTEEEEEEEEECCC
T ss_pred             hHHHH-------HHHHhhCCEEEEEee
Confidence            33333       345566666666543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=96.94  E-value=0.0063  Score=49.82  Aligned_cols=108  Identities=16%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEE-Ec----------CChHHHHHHHHc-C-------CceecChhhhhcCCCEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQA-FE----------ISDPLVDKFFML-G-------GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~-~d----------~~~~~~~~~~~~-g-------~~~~~~~~~~~~~~dvii   63 (173)
                      ++|.|.|.|++|+..++.|.+.|.+|+. .|          .+.+.+..+.+. |       .+...+ +-+-.+||+.+
T Consensus       245 ~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~-~il~~~~DIli  323 (501)
T 3mw9_A          245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG-SILEVDCDILI  323 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS-CGGGSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc-ccccccceEEe
Confidence            5799999999999999999999998764 33          445566555443 2       122221 22335799999


Q ss_pred             EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      -|...+....+.       .+.++ -++|+...+ .| ++.+..+.|.++|+.|+.+.
T Consensus       324 PcA~~n~I~~~n-------a~~l~-akiV~EgAN-~p-~T~eA~~iL~~rGIl~~PD~  371 (501)
T 3mw9_A          324 PAASEKQLTKSN-------APRVK-AKIIAEGAN-GP-TTPEADKIFLERNIMVIPDL  371 (501)
T ss_dssp             ECSSSCCBCTTT-------GGGCC-CSEEECCSS-SC-BCHHHHHHHHHTTCEEECHH
T ss_pred             eccccCccCHhH-------HHHcC-ceEEEeCCC-Cc-CCHHHHHHHHHCCCEEEChH
Confidence            886643222222       22332 345555444 35 34566778889999987653

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.93  E-value=0.0025  Score=49.52  Aligned_cols=86  Identities=12%  Similarity=-0.006  Sum_probs=59.5

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-HcCCcee-c-----Chhhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-MLGGIRS-A-----SPMDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~-~-----~~~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+ |.+|..+++.+...|.+|++.++++++.+.+. +.|.... +     +..+.+     ...|++|.++.. 
T Consensus       157 ~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~-  235 (345)
T 2j3h_A          157 ETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGG-  235 (345)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCH-
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCH-
Confidence            46888897 99999999999999999999999999988887 5665321 1     222222     257999988863 


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ..+...+       ..++++..++..+
T Consensus       236 ~~~~~~~-------~~l~~~G~~v~~G  255 (345)
T 2j3h_A          236 KMLDAVL-------VNMNMHGRIAVCG  255 (345)
T ss_dssp             HHHHHHH-------TTEEEEEEEEECC
T ss_pred             HHHHHHH-------HHHhcCCEEEEEc
Confidence            3333333       3445555565553

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.93  E-value=0.0047  Score=48.15  Aligned_cols=85  Identities=9%  Similarity=0.060  Sum_probs=61.2

Q ss_pred             EEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhhh------cCCCEEEEeccChhh
Q 044797            5 VGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDAG------KDVSALVVVISHVDQ   71 (173)
Q Consensus         5 Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~~------~~~dvii~~v~~~~~   71 (173)
                      ..+|  |.|.+|...++.+...|.+|++.++++++.+.+.+.|+... +    +..+.+      ...|+++-++.. ..
T Consensus       167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-~~  245 (349)
T 3pi7_A          167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-PL  245 (349)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-HH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-hh
Confidence            3455  99999999999999999999999999999988888776422 1    122221      369999999873 33


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ....       .+.++++..++..+.
T Consensus       246 ~~~~-------~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          246 ASAI-------FNAMPKRARWIIYGR  264 (349)
T ss_dssp             HHHH-------HHHSCTTCEEEECCC
T ss_pred             HHHH-------HhhhcCCCEEEEEec
Confidence            3333       355677777777653

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.92  E-value=0.00084  Score=54.33  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---eEEEEc----CC----hH-HHHHHHH-------c-CCc-eecChhhhhcCCCE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFE----IS----DP-LVDKFFM-------L-GGI-RSASPMDAGKDVSA   61 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d----~~----~~-~~~~~~~-------~-g~~-~~~~~~~~~~~~dv   61 (173)
                      .||.|+|+|.+|.++++.|...|.   +|+++|    |+    .+ +.+.+.+       . ... ...++.++++++|+
T Consensus       187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDV  266 (439)
T 2dvm_A          187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADV  266 (439)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCE
Confidence            479999999999999999999997   799999    87    32 2111211       1 111 23457788899999


Q ss_pred             EEEeccCh-hhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           62 LVVVISHV-DQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        62 ii~~v~~~-~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +|-++|.+ .....      +..+.+.++.++.|.++
T Consensus       267 lInaT~~~~G~~~~------e~v~~m~~~~iVfDLyn  297 (439)
T 2dvm_A          267 LISFTRPGPGVIKP------QWIEKMNEDAIVFPLAN  297 (439)
T ss_dssp             EEECSCCCSSSSCH------HHHTTSCTTCEEEECCS
T ss_pred             EEEcCCCccCCCCh------HHHHhcCCCCEEEECCC
Confidence            99999852 22211      12244667889999953

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.91  E-value=0.00026  Score=55.62  Aligned_cols=88  Identities=14%  Similarity=0.028  Sum_probs=52.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCe---EEEEc-C-ChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYK---VQAFE-I-SDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~---V~~~d-~-~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      +||+|+| .|..|.-+.+.|.++.|+   +.... + +..+.-.+........+...+.++++|++|.|+|... .++..
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-s~~~a   80 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAM-SKVQA   80 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHH-HHHHH
Confidence            5899999 899999999999988553   44332 2 2111000110111111111234578999999999433 33333


Q ss_pred             cCccchhhcCCCCCEEEEcCC
Q 044797           77 FGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st   97 (173)
                            ..++..|..+||.|+
T Consensus        81 ------~~~~~~G~~vID~Sa   95 (344)
T 3tz6_A           81 ------PRFAAAGVTVIDNSS   95 (344)
T ss_dssp             ------HHHHHTTCEEEECSS
T ss_pred             ------HHHHhCCCEEEECCC
Confidence                  123456889999986

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.91  E-value=0.0091  Score=48.57  Aligned_cols=67  Identities=9%  Similarity=-0.051  Sum_probs=48.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHc-CCceec--ChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFML-GGIRSA--SPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~-g~~~~~--~~~~~~~~~dvii~~v~~~   69 (173)
                      ++|.|+|.|..|..-++.|.+.|.+|++++++. +..+.+.+. +++...  -..+.++++|+||.++.++
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~   83 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD   83 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCH
Confidence            689999999999999999999999999999763 334444432 343321  1234467899999987654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.91  E-value=0.0043  Score=46.84  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+...
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   65 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAV   65 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            44455  5789999999999999999999999998876654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.91  E-value=0.002  Score=50.21  Aligned_cols=86  Identities=16%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cChhhhh------cCCCEEEEeccChhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASPMDAG------KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~~------~~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|....    .+..+.+      +..|++|-++..+ .
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~-~  239 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP-A  239 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC---C
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh-H
Confidence            47888998 999999999999999999999999999988887775432    1222221      1589999998743 3


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +...       ...++++..++..+
T Consensus       240 ~~~~-------~~~l~~~G~iv~~G  257 (342)
T 4eye_A          240 FDDA-------VRTLASEGRLLVVG  257 (342)
T ss_dssp             HHHH-------HHTEEEEEEEEEC-
T ss_pred             HHHH-------HHhhcCCCEEEEEE
Confidence            3333       24455666666654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.90  E-value=0.0021  Score=49.57  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhh--h-----cCCCEEEEeccChhhhhhh
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA--G-----KDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~--~-----~~~dvii~~v~~~~~~~~v   75 (173)
                      +|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|+...-+..+.  +     ...|+++-++.. ..++..
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~  227 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD-KVLAKV  227 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH-HHHHHH
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc-HHHHHH
Confidence            4888898 999999999999999999999999999998888886533222211  1     246888888763 333333


Q ss_pred             hcCccchhhcCCCCCEEEEcCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st   97 (173)
                             ...++++..++..+.
T Consensus       228 -------~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          228 -------LAQMNYGGCVAACGL  242 (324)
T ss_dssp             -------HHTEEEEEEEEECCC
T ss_pred             -------HHHHhcCCEEEEEec
Confidence                   345566666666643

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.90  E-value=0.001  Score=51.32  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=44.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHH----HHHH---cCCce-------ecChhhhhc--CCCEEEEe
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVD----KFFM---LGGIR-------SASPMDAGK--DVSALVVV   65 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~----~~~~---~g~~~-------~~~~~~~~~--~~dvii~~   65 (173)
                      |+|.|.| .|.+|..+++.|++.|++|++.+|++++.+    .+.+   .++..       ..+..++++  ++|+||.+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   85 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHF   85 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEEC
Confidence            5788886 699999999999999999999998754432    2221   12221       112334555  78999987


Q ss_pred             cc
Q 044797           66 IS   67 (173)
Q Consensus        66 v~   67 (173)
                      ..
T Consensus        86 A~   87 (341)
T 3enk_A           86 AA   87 (341)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.89  E-value=0.0018  Score=50.07  Aligned_cols=86  Identities=10%  Similarity=0.052  Sum_probs=59.8

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhh----h--cCCCEEEEeccChh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDA----G--KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~----~--~~~dvii~~v~~~~   70 (173)
                      .+|.|+| .|.+|..+++.+...|.+|++.++++++.+.+.+.|.... +    +..+.    .  ...|++|.++. +.
T Consensus       142 ~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-~~  220 (327)
T 1qor_A          142 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-RD  220 (327)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-GG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-hH
Confidence            4688888 7999999999999999999999999998888777665321 1    11111    1  14799999887 44


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .++..+       +.++++..++..+
T Consensus       221 ~~~~~~-------~~l~~~G~iv~~g  239 (327)
T 1qor_A          221 TWERSL-------DCLQRRGLMVSFG  239 (327)
T ss_dssp             GHHHHH-------HTEEEEEEEEECC
T ss_pred             HHHHHH-------HHhcCCCEEEEEe
Confidence            444333       3455555666554

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.88  E-value=0.0017  Score=50.61  Aligned_cols=86  Identities=16%  Similarity=0.076  Sum_probs=59.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhh----h--cCCCEEEEeccChh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDA----G--KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~----~--~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|.... +    +..+.    .  ...|++|-++. +.
T Consensus       168 ~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~  246 (343)
T 2eih_A          168 DDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-AL  246 (343)
T ss_dssp             CEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-SS
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-HH
Confidence            47889998 999999999999999999999999999888877665321 1    11111    1  25789998887 44


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .++..+       +.++++..++..+
T Consensus       247 ~~~~~~-------~~l~~~G~~v~~g  265 (343)
T 2eih_A          247 YFEGVI-------KATANGGRIAIAG  265 (343)
T ss_dssp             SHHHHH-------HHEEEEEEEEESS
T ss_pred             HHHHHH-------HhhccCCEEEEEe
Confidence            343333       3344445555554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.88  E-value=0.013  Score=45.02  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=62.4

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----C-hhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----S-PMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~-~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|+| +|.+|...++.+...|.+|++.++ +++.+.+++.|+... +    + ..+.++..|+++-++.. ......
T Consensus       154 ~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~~~~~~  231 (321)
T 3tqh_A          154 DVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-DVGIQS  231 (321)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-HHHHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-HHHHHH
Confidence            4688886 999999999999999999988874 455676777776522 1    2 33445678999999974 333333


Q ss_pred             hcCccchhhcCCCCCEEEEcCCCCH
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTILP  100 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~~~  100 (173)
                      +       +.++++..++..+....
T Consensus       232 ~-------~~l~~~G~iv~~g~~~~  249 (321)
T 3tqh_A          232 I-------DCLKETGCIVSVPTITA  249 (321)
T ss_dssp             G-------GGEEEEEEEEECCSTTH
T ss_pred             H-------HhccCCCEEEEeCCCCc
Confidence            3       45667777777765443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.88  E-value=0.0034  Score=50.94  Aligned_cols=105  Identities=22%  Similarity=0.260  Sum_probs=70.7

Q ss_pred             CeEEEEeCC----------hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLD----------EYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G----------~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      .||+|+|+-          .-...+++.|.+.|.+|.+||+.... +..... ++..++++.++++++|++++++..++ 
T Consensus       323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~-  400 (446)
T 4a7p_A          323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVE-QASKMLTDVEFVENPYAAADGADALVIVTEWDA-  400 (446)
T ss_dssp             CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHH-HHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTT-
T ss_pred             CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCH-hHHHhcCCceEecChhHHhcCCCEEEEeeCCHH-
Confidence            589999987          56788999999999999999998642 111222 56677788899999999999998653 


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +++.=  .+.+.+.++ ..+|+|.-.....      +.+++.|..|.
T Consensus       401 f~~~d--~~~~~~~~~-~~~i~D~r~~~~~------~~~~~~g~~y~  438 (446)
T 4a7p_A          401 FRALD--LTRIKNSLK-SPVLVDLRNIYPP------AELERAGLQYT  438 (446)
T ss_dssp             TTSCC--HHHHHTTBS-SCBEECSSCCSCH------HHHHHTTCBCC
T ss_pred             hhcCC--HHHHHHhcC-CCEEEECCCCCCH------HHHHhcCCEEE
Confidence            32221  022333343 4689998765432      22344566553

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.85  E-value=0.0041  Score=46.72  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+.+|  |.+.+|.++|+.|++.|.+|.+.+|++++.++..
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   50 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESV   50 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            78888  8889999999999999999999999998876543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.85  E-value=0.0063  Score=45.93  Aligned_cols=40  Identities=10%  Similarity=0.054  Sum_probs=32.9

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   74 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVAD   74 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            44444  57899999999999999999999999887765543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.84  E-value=0.0027  Score=49.69  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=60.2

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh-----cCCCEEEEeccChhh
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG-----KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~-----~~~dvii~~v~~~~~   71 (173)
                      .+|.|+ |.|.+|...++.++..|.+|++.++++++.+.+.+.|....-     +..+.+     ...|++|-++.. ..
T Consensus       169 ~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-~~  247 (353)
T 4dup_A          169 ESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-AY  247 (353)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-GG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-HH
Confidence            468888 689999999999999999999999999999888887754221     122222     258999999874 33


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +...+       ..++++..++..+
T Consensus       248 ~~~~~-------~~l~~~G~iv~~g  265 (353)
T 4dup_A          248 FERNI-------ASLAKDGCLSIIA  265 (353)
T ss_dssp             HHHHH-------HTEEEEEEEEECC
T ss_pred             HHHHH-------HHhccCCEEEEEE
Confidence            33332       3445555555554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.84  E-value=0.0076  Score=44.57  Aligned_cols=39  Identities=10%  Similarity=-0.086  Sum_probs=32.5

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      ++.|. |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus         9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (247)
T 2jah_A            9 VALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALG   48 (247)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            34444 6789999999999999999999999988776543

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=96.84  E-value=0.0064  Score=47.91  Aligned_cols=108  Identities=11%  Similarity=0.057  Sum_probs=67.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHC-CCeEEE--EcCChHHHHHHHH-cCCcee-----cCh--------------hhhh--
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRS-GYKVQA--FEISDPLVDKFFM-LGGIRS-----ASP--------------MDAG--   56 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~-g~~V~~--~d~~~~~~~~~~~-~g~~~~-----~~~--------------~~~~--   56 (173)
                      +||+|+| .|.+|..-..-+.++ .++|.+  .++|.+++.+... .+.+..     .+.              .+++  
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~   83 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEA   83 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcC
Confidence            6899999 699999988888776 466653  5889888765433 343322     121              2444  


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCcee
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~  117 (173)
                      .++|+|+.+++....+...+       ..++.|+.|.-..-.+- ..-..+.+..+++|+..
T Consensus        84 ~~~D~Vv~AivG~aGL~ptl-------aAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~l  138 (376)
T 3a06_A           84 LKPDITMVAVSGFSGLRAVL-------ASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTEL  138 (376)
T ss_dssp             HCCSEEEECCCSTTHHHHHH-------HHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEEeeCHHHHHHHH-------HHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEE
Confidence            46999999999877776665       33456777765432111 11233444445556554

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.83  E-value=0.0022  Score=47.07  Aligned_cols=43  Identities=9%  Similarity=0.044  Sum_probs=35.4

Q ss_pred             CCCeEEEE--eCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFV--GLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~Igii--G~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~   43 (173)
                      |..|..+|  |.|.+|.++++.|++.|  ++|++.+|++++.+.+.+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~   47 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh
Confidence            55554455  67999999999999999  999999999888776654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.83  E-value=0.0057  Score=48.48  Aligned_cols=64  Identities=9%  Similarity=0.025  Sum_probs=43.4

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCC-----eEEEEcCCh----HHHHH----HHHc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGY-----KVQAFEISD----PLVDK----FFML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~-----~V~~~d~~~----~~~~~----~~~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      +||+|+| .|.+|++++..+...+.     ++.++|.+.    ++++-    +.+.      .+...++..+.++++|+|
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDvV  112 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA  112 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCEE
Confidence            5899999 79999999999988763     266654432    22321    1111      123345567889999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      |++.
T Consensus       113 Vita  116 (375)
T 7mdh_A          113 LLIG  116 (375)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9975

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.82  E-value=0.0013  Score=49.97  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=30.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ++|.|||+|.+|..-++.|.+.|++|++++++.
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            689999999999999999999999999998764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.82  E-value=0.0098  Score=44.77  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   62 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTT   62 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            44455  789999999999999999999999998876554

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.82  E-value=0.0094  Score=44.21  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             CCCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            1 MASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         1 m~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |.+++-|. |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus         1 m~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   43 (256)
T 1geg_A            1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA   43 (256)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            44556666 5789999999999999999999999988766543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.82  E-value=0.006  Score=45.41  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=33.8

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   54 (256)
T 3gaf_A           13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAA   54 (256)
T ss_dssp             CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            55566  67999999999999999999999999887766543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.82  E-value=0.0036  Score=49.09  Aligned_cols=74  Identities=14%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCcee-cC---hh----hhhc--CCCEEEEeccChh-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIRS-AS---PM----DAGK--DVSALVVVISHVD-   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~-~~---~~----~~~~--~~dvii~~v~~~~-   70 (173)
                      .+|.|+|+|.+|...++.+... |.+|++.++++++.+.+.+.|+... +.   ..    +...  ..|++|-++..+. 
T Consensus       188 ~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~~  267 (359)
T 1h2b_A          188 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQAT  267 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCchH
Confidence            4789999999999999999888 9999999999999998888886432 11   11    1221  5899999998654 


Q ss_pred             -hhhhhh
Q 044797           71 -QIDDIF   76 (173)
Q Consensus        71 -~~~~v~   76 (173)
                       .+...+
T Consensus       268 ~~~~~~~  274 (359)
T 1h2b_A          268 VDYTPYL  274 (359)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHHh
Confidence             444433

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.82  E-value=0.0058  Score=45.58  Aligned_cols=39  Identities=15%  Similarity=0.026  Sum_probs=32.9

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   70 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVE   70 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            44455  5799999999999999999999999998876654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.82  E-value=0.0087  Score=43.97  Aligned_cols=40  Identities=13%  Similarity=0.075  Sum_probs=33.5

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   56 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSD   56 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence            45555  56999999999999999999999999988766543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.82  E-value=0.0024  Score=49.59  Aligned_cols=87  Identities=8%  Similarity=0.011  Sum_probs=61.4

Q ss_pred             CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+| .+|...++.+...|.+|++.++++++.+.+.+.|....-     +..+.+      ...|++|-++..+ 
T Consensus       146 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~-  224 (340)
T 3gms_A          146 DVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGP-  224 (340)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHH-
T ss_pred             CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCCh-
Confidence            478888987 999999999999999999999999999888887764221     122211      2589999998743 


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .....+       ..++++..++..+.
T Consensus       225 ~~~~~~-------~~l~~~G~iv~~G~  244 (340)
T 3gms_A          225 DGNELA-------FSLRPNGHFLTIGL  244 (340)
T ss_dssp             HHHHHH-------HTEEEEEEEEECCC
T ss_pred             hHHHHH-------HHhcCCCEEEEEee
Confidence            333222       34566666666643

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.82  E-value=0.004  Score=47.73  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=30.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      .+|.|||+|..|+.++++|...|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999995 789998765

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=96.81  E-value=0.0039  Score=48.67  Aligned_cols=90  Identities=13%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC-CeEEEE-cC-ChHHHHHHHHc--------CCc---------------eec--Chh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG-YKVQAF-EI-SDPLVDKFFML--------GGI---------------RSA--SPM   53 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~-d~-~~~~~~~~~~~--------g~~---------------~~~--~~~   53 (173)
                      |.||||+|.|++|.-+.+.|.++. .+|... ++ +++....+.+.        +..               ...  +++
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   80 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA   80 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChh
Confidence            359999999999999999998765 466544 44 34433322221        100               111  233


Q ss_pred             hh---hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           54 DA---GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        54 ~~---~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +.   ..++|+||.|+|..... +..      ..+++.|..+|+.|.-
T Consensus        81 ~i~w~~~~vDvVf~atg~~~s~-e~a------~~~l~~GakvVdlSa~  121 (330)
T 1gad_O           81 NLKWDEVGVDVVAEATGLFLTD-ETA------RKHITAGAKKVVMTGP  121 (330)
T ss_dssp             GGCHHHHTCSEEEECSSSCCSH-HHH------THHHHTTCSEEEESSC
T ss_pred             hCccccccCCEEEECCCccccH-HHH------HHHHHCCCEEEEECCC
Confidence            32   14799999999854332 222      2344556666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	5e-10
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	2e-08
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	1e-04
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	6e-04
d2pgda2	176	c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase	0.001

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.3 bits (127), Expect = 5e-10
 Identities = 20/102 (19%), Positives = 50/102 (49%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           KVGF+GL      M+ +L+++GY +   + +   +      G   +++     +    ++
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQK 105
            ++ +   + ++  G  G+++G + G V+I  S+I P   ++
Sbjct: 62  TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASRE 103

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 23/106 (21%), Positives = 52/106 (49%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
            ++ F+GL      MA +L+++GY +  F++    VD     G   + S  DA +    +
Sbjct: 2   KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           + ++     ++ ++   +G+L  +  G +++  STI P+  +K+  
Sbjct: 62  ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA 107

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 1/103 (0%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSAL 62
            VG VGL     ++A ++   G+KV  F  +    ++F         +      + + A 
Sbjct: 3   DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62

Query: 63  VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQK 105
              +    +   +          +++   +  +  IL      
Sbjct: 63  AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNA 105

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 6/110 (5%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           +VGF+G  E +  +A+ L   G +V                    + +  +       ++
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN 113
             ++    +            G     + +  + I P  ++         
Sbjct: 62  SAVTPGVALGAARRA------GRHVRGIYVDINNISPETVRMASSLIEKG 105

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 5/109 (4%)

Query: 3   SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
           + +  +GL     ++  ++   G+ V AF  +   VD F       +        +    
Sbjct: 3   ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS 62

Query: 63  VVVISHVDQI-----DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            +       +       +    E ++  L  G +II           + 
Sbjct: 63  KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRR 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	100.0
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.98
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.96
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.95
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.93
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.9
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.87
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.87
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.82
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.8
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.8
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.69
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.68
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.66
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.64
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.61
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.55
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.48
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.48
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.47
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.47
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.47
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.45
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.44
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.42
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.41
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.37
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.33
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	99.14
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	99.06
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.05
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.05
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.98
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.97
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.96
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.95
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.95
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.88
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.87
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.83
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.8
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.79
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.77
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.74
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.73
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.72
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.65
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.65
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	98.64
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.64
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.58
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.55
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	98.53
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.5
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.5
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.49
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.48
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.47
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.47
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.45
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.43
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.42
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.4
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.38
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.38
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.37
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	98.37
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.37
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.36
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.34
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.27
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.24
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.22
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	98.21
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.21
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.2
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.2
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.2
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	98.19
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.14
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.13
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.13
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	98.13
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.12
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.09
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	98.09
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.09
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.09
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.09
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.05
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.99
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.99
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.98
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.98
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.95
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.9
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.85
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.85
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.83
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.82
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.81
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.8
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.79
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.78
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.78
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.76
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.73
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.68
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.66
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.66
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.62
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.61
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.6
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.58
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.57
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.5
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.49
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.47
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.44
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.43
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.43
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.42
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.41
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.4
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.36
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.36
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.34
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	97.32
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.3
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.27
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.23
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.23
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.2
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.18
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.17
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.16
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.15
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.14
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.14
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.13
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.08
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.08
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.08
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.05
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.05
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.04
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.04
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.02
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.02
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.99
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.98
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.95
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.93
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.92
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.92
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.89
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.86
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.85
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.85
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.84
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.84
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.84
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.83
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.82
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.8
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.79
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.78
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.78
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.76
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.73
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.73
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.73
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.72
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.72
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.7
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.69
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.68
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.68
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.66
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.65
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.64
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.64
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.62
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.59
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	96.57
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.57
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.56
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.55
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.55
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.54
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.53
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.53
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.52
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.5
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.46
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.46
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.45
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.45
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.44
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.42
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.42
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.41
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.4
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	96.39
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.39
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.38
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.34
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.34
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.33
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.33
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.32
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	96.31
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.28
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.26
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.24
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.24
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.23
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.22
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.2
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.19
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.17
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.17
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.13
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.1
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.09
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.08
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.08
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.04
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.03
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.0
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.0
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.97
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.95
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.93
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.9
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.85
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.81
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.79
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.74
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.73
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.69
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.68
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.68
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	95.62
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.55
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.47
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.47
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.45
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.41
d5nula_	138	Flavodoxin {Clostridium beijerinckii [TaxId: 1520]	95.4
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.39
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	95.34
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.29
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.26
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.25
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.21
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.15
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	95.15
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	95.13
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.13
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.05
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.02
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.95
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.93
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	94.91
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.72
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	94.71
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.68
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.68
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	94.65
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.57
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.56
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.55
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.44
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	94.43
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.34
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.25
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.25
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.23
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.23
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.19
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	94.17
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.15
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	94.15
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.11
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.11
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.02
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.92
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.89
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.88
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	93.87
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.87
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	93.78
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.74
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.71
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.65
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	93.61
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.6
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	93.58
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.52
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.49
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.49
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.45
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.43
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	93.41
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.17
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.12
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	93.1
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.03
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.83
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.79
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.78
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	92.73
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.72
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.67
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.66
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.46
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	92.44
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	92.43
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	92.43
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	92.43
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.31
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.28
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	92.12
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	92.1
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.02
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	91.93
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.82
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.81
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	91.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.79
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.7
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	91.63
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	91.63
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.5
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	91.48
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.23
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	91.14
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.12
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	90.92
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	90.84
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	90.73
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.73
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.49
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.37
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.27
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	90.15
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	90.05
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.0
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.89
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	89.86
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.79
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.75
d1f4pa_	147	Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}	89.25
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	89.21
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	89.09
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	88.69
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	88.66
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.59
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	88.55
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	88.13
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.06
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	88.02
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	87.99
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	87.76
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	87.71
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	87.17
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	87.14
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	86.52
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.12
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	85.96
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	85.9
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	85.63
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.51
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	85.23
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	84.94
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	84.92
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	84.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.23
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	83.99
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	83.78
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.71
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.67
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	83.47
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	83.46
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	83.44
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.37
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	83.35
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	82.94
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.83
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	82.69
d1sqsa_	232	Hypothetical protein SP1951 {(Streptococcus pneumo	82.18
d1rtta_	174	Hypothetical protein PA1204 {Pseudomonas aeruginos	82.08
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	81.9
d1d4aa_	273	NAD(P)H:quinone reductase {Human (Homo sapiens) [T	81.25
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	80.75
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	80.74
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.7
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	80.55
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	80.41
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.09

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.9e-33  Score=197.34  Aligned_cols=147  Identities=14%  Similarity=0.313  Sum_probs=137.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      |||||||+|+||.+||++|+++|++|++|||++++.+.+.+.+.....++.++++++|+|++|+|++.+++++++..+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999776778


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKV  148 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~  148 (173)
                      .+.+++|++|+|+||.+|++.+++.+.+++++++|++.+             +++++|+++.+++++++|+.+|. ++|+
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~  160 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  160 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEC
Confidence            899999999999999999999999999999999999864             77889999999999999999985 5676


Q ss_pred             c
Q 044797          149 N  149 (173)
Q Consensus       149 g  149 (173)
                      |
T Consensus       161 G  161 (161)
T d1vpda2         161 G  161 (161)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.98  E-value=3.4e-31  Score=187.45  Aligned_cols=148  Identities=16%  Similarity=0.333  Sum_probs=136.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |+||||||+|.||++||++|.++||+|.+|||++++.+.+.+.+.....++.++++.+|+|++|+|++.+.+.++....+
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            57899999999999999999999999999999999999999999898999999999999999999999888888866567


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~  147 (173)
                      +.+.+.++++|+|+||++|++.+++.+.++++|++|++.+             +++++|+++.+++++++|+.+|. ++|
T Consensus        81 ~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~  160 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH  160 (162)
T ss_dssp             HHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEE
Confidence            8889999999999999999999999999999999999864             77889999999999999999995 566


Q ss_pred             ec
Q 044797          148 VN  149 (173)
Q Consensus       148 ~g  149 (173)
                      +|
T Consensus       161 ~G  162 (162)
T d3cuma2         161 AG  162 (162)
T ss_dssp             EE
T ss_pred             Cc
Confidence            65

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.96  E-value=3.4e-28  Score=174.06  Aligned_cols=141  Identities=11%  Similarity=0.178  Sum_probs=125.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC--------ceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG--------IRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~--------~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      .+|||||+|+||.+||++|+++|++|++|||++++.+.+.+.+.        ....++.+.+..+|.+++++|++.++.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            57999999999999999999999999999999999999987643        2334455778889999999998888888


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhh
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEF  142 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~  142 (173)
                      +.   +++.+.+++|++++|+||..|.+.+++.+.+.+.|++|++.+            +++++|+++.+++++|+|+.+
T Consensus        83 v~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~  159 (176)
T d2pgda2          83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI  159 (176)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred             HH---HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHH
Confidence            87   578899999999999999999999999999999999999864            678899999999999999999


Q ss_pred             CCce
Q 044797          143 FIDK  146 (173)
Q Consensus       143 g~~~  146 (173)
                      +..+
T Consensus       160 ~~kv  163 (176)
T d2pgda2         160 AAKV  163 (176)
T ss_dssp             SCBC
T ss_pred             hccc
Confidence            9654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.95  E-value=1e-26  Score=166.48  Aligned_cols=150  Identities=13%  Similarity=0.200  Sum_probs=128.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce--------ecCh---hhhhcCCCEEEEeccChh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR--------SASP---MDAGKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--------~~~~---~~~~~~~dvii~~v~~~~   70 (173)
                      .|||||||+|+||.+||++|+++|++|++|||++++.+++.+.+...        ..+.   ...+..++.++.++++..
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA   80 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence            37999999999999999999999999999999999999998765321        1222   233557888899988777


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHH
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLV  138 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~  138 (173)
                      .++.++   .++...+.+++++++++|..|.+.+++.+.+.+.+++|++.+            +++++|+++.+++++|+
T Consensus        81 ~~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pi  157 (178)
T d1pgja2          81 ATDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPI  157 (178)
T ss_dssp             HHHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHH
T ss_pred             hhhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHH
Confidence            777777   467788999999999999999999999999999999998864            67899999999999999


Q ss_pred             HHhhCC-ce----eecCCCch
Q 044797          139 KNEFFI-DK----KVNISGQE  154 (173)
Q Consensus       139 ~~~~g~-~~----~~g~~Gsg  154 (173)
                      |+.++. +.    |+|..|+|
T Consensus       158 l~~~~~~~~~~~~~~g~~G~G  178 (178)
T d1pgja2         158 VEAAAAKADDGRPCVTMNGSG  178 (178)
T ss_dssp             HHHHSCBCTTSCBSCCCCCST
T ss_pred             HHHHhccccCCCCccCCCCCC
Confidence            999995 33    79999987

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=7.5e-26  Score=158.75  Aligned_cols=141  Identities=13%  Similarity=0.157  Sum_probs=121.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVL   83 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~   83 (173)
                      ||||||+|+||.+||++|.++|+.+ +|||++++...+.+.+..... ..+.+.++|++++++|++.++..+.   +++.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~v~~~~---~~l~   76 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EALY   76 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCccc-ccccccceeEEEecccchhhhhhhh---cccc
Confidence            8999999999999999999999865 689998888777666444443 4566678999999999888777766   5788


Q ss_pred             hcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhC-Cceeec
Q 044797           84 KGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFF-IDKKVN  149 (173)
Q Consensus        84 ~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g-~~~~~g  149 (173)
                      +.+.++++++|+||.+|.+.+++.+.++++|++|++++             +++++|+++.+++++|+|+ ++ .+.|+|
T Consensus        77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~~~v~~~G  155 (156)
T d2cvza2          77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVG  155 (156)
T ss_dssp             TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TEEEEEEEE
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hcCcCEEeC
Confidence            89999999999999999999999999999999999875             7889999999999999995 65 467887


Q ss_pred             C
Q 044797          150 I  150 (173)
Q Consensus       150 ~  150 (173)
                      +
T Consensus       156 P  156 (156)
T d2cvza2         156 P  156 (156)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.90  E-value=1.3e-22  Score=143.07  Aligned_cols=141  Identities=12%  Similarity=0.121  Sum_probs=111.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC-ceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG-IRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |||+|||+|+||+++|++|.++|++|++|||++++.+++.+.+. ....+..++++++|+||+|+| +..+++++   ++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp-~~~~~~vl---~~   76 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP-IQLILPTL---EK   76 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC-HHHHHHHH---HH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCc-Hhhhhhhh---hh
Confidence            69999999999999999999999999999999999998888774 344456678899999999999 56788888   57


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-Cceeeec----------------eeeee----ecCHhhHHHHHHHHH
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-LTFYILE----------------RMFLI----SSSIDCFTYLFLVKN  140 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g~~~v~~----------------~~~~~----~g~~~~~~~~~~~~~  140 (173)
                      +.+.++++++++++++..........+..... +.|.+..                ..+.+    +++++..+.++++++
T Consensus        77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~  156 (165)
T d2f1ka2          77 LIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLE  156 (165)
T ss_dssp             HGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHG
T ss_pred             hhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            88999999999999998877776666654321 2232211                12222    567888999999999


Q ss_pred             hhCCcee
Q 044797          141 EFFIDKK  147 (173)
Q Consensus       141 ~~g~~~~  147 (173)
                      .+|..+|
T Consensus       157 ~lG~~v~  163 (165)
T d2f1ka2         157 PLGVKIY  163 (165)
T ss_dssp             GGTCEEE
T ss_pred             HhCCEEE
Confidence            9997554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=5.1e-22  Score=138.37  Aligned_cols=136  Identities=10%  Similarity=0.021  Sum_probs=102.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      |||||||+|+||++++++|+++|++|++||+++++...+...+.....++.++++++|+||+|+|++.. .+++   .+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~-~~~~---~~~   76 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVA-LGAA---RRA   76 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGH-HHHH---HHH
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchH-HHHH---Hhh
Confidence            699999999999999999999999999999988777776666666677899999999999999996544 4444   233


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC-ceeec
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI-DKKVN  149 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~g  149 (173)
                      .+.  .+++++|+||.+|.+.+++.+.++..  .|++.+            .++++|+..  +.++ .++.+|. +.++|
T Consensus        77 ~~~--~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~--~~~~-~l~~~g~~i~~~G  149 (152)
T d1i36a2          77 GRH--VRGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDA--EEFM-KLNRYGLNIEVRG  149 (152)
T ss_dssp             HTT--CCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTH--HHHH-GGGGGTCEEEECS
T ss_pred             ccc--CCceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCH--HHHH-HHHHcCCeeeEcC
Confidence            333  36899999999999999999988654  366543            344555442  2222 3667775 34554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.87  E-value=2.1e-21  Score=135.28  Aligned_cols=135  Identities=13%  Similarity=0.066  Sum_probs=106.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      |||||||+|+||++++++|.++|+++++|+|++++.+.+.+. |+..+.+++++++++|+||+|++ |+++++++     
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl-----   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL-----   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH-----
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh-----
Confidence            699999999999999999999999999999999999887654 88888999999999999999998 67777776     


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ceeeeeec----CHhhHHHHHHHHHhhCCcee
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ERMFLISS----SIDCFTYLFLVKNEFFIDKK  147 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~~~~~~g----~~~~~~~~~~~~~~~g~~~~  147 (173)
                        +.+++++++++..++.  +..++.+.+.. ..+++.          .+.+.++.    +++.++.++++|+.+|...+
T Consensus        75 --~~l~~~~~iis~~agi--~~~~l~~~l~~-~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~  149 (152)
T d2ahra2          75 --KPLHFKQPIISMAAGI--SLQRLATFVGQ-DLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFD  149 (152)
T ss_dssp             --TTSCCCSCEEECCTTC--CHHHHHHHHCT-TSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEE
T ss_pred             --hhcccceeEecccccc--cHHHHHhhhcc-cccchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence              3467889999886643  34566777643 233321          23444433    36788999999999998766


Q ss_pred             e
Q 044797          148 V  148 (173)
Q Consensus       148 ~  148 (173)
                      +
T Consensus       150 v  150 (152)
T d2ahra2         150 I  150 (152)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2e-21  Score=135.27  Aligned_cols=134  Identities=13%  Similarity=0.026  Sum_probs=97.0

Q ss_pred             EEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhh
Q 044797            5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLK   84 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~   84 (173)
                      |||||+|+||++|+++|.+.++.+.+|+|++++.+++.+.+.....++.++++++|+||+|+|+ .++.+++   +++  
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~---~~l--   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVA---NHL--   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHH---TTT--
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHH---hhh--
Confidence            7999999999999999977655567999999999999988666677888999999999999995 5677776   233  


Q ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-------------eeeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797           85 GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-------------RMFLISSSIDCFTYLFLVKNEFFI-DKKV  148 (173)
Q Consensus        85 ~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-------------~~~~~~g~~~~~~~~~~~~~~~g~-~~~~  148 (173)
                       -.++++++++++..+...  + +.....+++++..             ..++++++++.++.++++++.+|. +.++
T Consensus        76 -~~~~~ivi~~s~~~~~~~--l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i  149 (153)
T d2i76a2          76 -NLGDAVLVHCSGFLSSEI--F-KKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVI  149 (153)
T ss_dssp             -CCSSCCEEECCSSSCGGG--G-CSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEEC
T ss_pred             -cccceeeeecccchhhhh--h-hhhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEe
Confidence             247899999998766432  1 1122233443321             167789999999999999999994 4444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.81  E-value=3.1e-19  Score=124.09  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||+|||+|+||++|+++|+++| ++|.+|||++++.+.+.+. ++...++.++ ++++|+||+|+| |+++.+++   +
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~---~   75 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAAC---K   75 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhH---H
Confidence            69999999999999999999887 8999999999999998775 7777776655 577999999999 78888887   3


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-C-ceeee-------ceeeeee-c---CHhhHHHHHHHHHhhCCcee
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-L-TFYIL-------ERMFLIS-S---SIDCFTYLFLVKNEFFIDKK  147 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g-~~~v~-------~~~~~~~-g---~~~~~~~~~~~~~~~g~~~~  147 (173)
                      ++.   ..++++++..++.  +...+.+.+... . ++.+.       .+...+. +   +++..+.++.+|+.+|...+
T Consensus        76 ~l~---~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2          76 NIR---TNGALVLSVAAGL--SVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             TCC---CTTCEEEECCTTC--CHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEE
T ss_pred             HHh---hcccEEeecccCC--CHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence            332   4578899887654  345677776421 1 22211       1233333 2   35667889999999997765


Q ss_pred             e
Q 044797          148 V  148 (173)
Q Consensus       148 ~  148 (173)
                      +
T Consensus       151 v  151 (152)
T d1yqga2         151 L  151 (152)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.80  E-value=5.2e-19  Score=122.78  Aligned_cols=127  Identities=13%  Similarity=0.128  Sum_probs=100.0

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      ++||+||| +|.||.+||++|.++||+|.+||++++..             .++.++++|++++++| ...+..++   .
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~-~~~~~~v~---~   71 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVP-INLTLETI---E   71 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSC-GGGHHHHH---H
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccc-hhhheeee---e
Confidence            57999999 99999999999999999999999987543             3455678999999999 45666676   5


Q ss_pred             chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeece----------eeeeecCHhhHHHHHHHHHhhCCc
Q 044797           81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILER----------MFLISSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~~----------~~~~~g~~~~~~~~~~~~~~~g~~  145 (173)
                      ++.+.++++++++|++|.++...+++.+.+..+  +.|.+..+          ++.-+++++.+++++++++.+|..
T Consensus        72 ~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~  148 (152)
T d2pv7a2          72 RLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK  148 (152)
T ss_dssp             HHGGGCCTTSEEEECCSCCHHHHHHHHHHCSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCE
T ss_pred             cccccccCCceEEEecccCHHHHHHHHHHccCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCE
Confidence            688899999999999999999888887765432  22222111          333467788899999999999863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.80  E-value=2.3e-18  Score=121.49  Aligned_cols=141  Identities=18%  Similarity=0.143  Sum_probs=108.6

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCc--eecChhh-hhcCCCEEEEeccChhhhhhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGI--RSASPMD-AGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~--~~~~~~~-~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      |++|+|||+|.||+++|++|.+.|+  +|++||++++..+.+.+.+..  ...+..+ ...++|+|++|+| +..+.+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl   79 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA   79 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhh
Confidence            4579999999999999999999995  789999999999998888652  3444444 3457999999999 67778887


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeec----------------eeeee----ecCHhhHHH
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILE----------------RMFLI----SSSIDCFTY  134 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~----------------~~~~~----~g~~~~~~~  134 (173)
                         +++.+.++++++++|+++......+.+.+.+..+  +.|.+..                +.+.+    ..+++..+.
T Consensus        80 ---~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~  156 (171)
T d2g5ca2          80 ---KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL  156 (171)
T ss_dssp             ---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHH
T ss_pred             ---hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHH
Confidence               5688889999999999998888888888777543  3332211                12233    335678889


Q ss_pred             HHHHHHhhCCce
Q 044797          135 LFLVKNEFFIDK  146 (173)
Q Consensus       135 ~~~~~~~~g~~~  146 (173)
                      ++.+++.+|..+
T Consensus       157 v~~~~~~lG~~v  168 (171)
T d2g5ca2         157 VKRVWEDVGGVV  168 (171)
T ss_dssp             HHHHHHHTTCEE
T ss_pred             HHHHHHHcCCEE
Confidence            999999999643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.1e-16  Score=113.60  Aligned_cols=141  Identities=11%  Similarity=0.055  Sum_probs=103.7

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC------------------CceecC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG------------------GIRSAS   51 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g------------------~~~~~~   51 (173)
                      |.+||+|||+|.||+.+|..++.+|++|++||++++.+++..+           .+                  +..+.+
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            5689999999999999999999999999999999987654211           11                  224667


Q ss_pred             hhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece------
Q 044797           52 PMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER------  121 (173)
Q Consensus        52 ~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~------  121 (173)
                      ..++++++|+|+.|+|.+..++.-++  .++.+.++++.++.+.++.-+.  .++.+.+..    .|.||+..+      
T Consensus        83 ~~~a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~HffnP~~~~~lV  158 (192)
T d1f0ya2          83 AASVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQI--TSIANATTRQDRFAGLHFFNPVPVMKLV  158 (192)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred             hHhhhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCccccc--chhhhhccCHhHEEeeccccccCcccEE
Confidence            77889999999999998877776665  4677888888888766554332  344444432    266776543      


Q ss_pred             --eeeeecCHhhHHHHHHHHHhhCCc
Q 044797          122 --MFLISSSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       122 --~~~~~g~~~~~~~~~~~~~~~g~~  145 (173)
                        +..-..+++..+.+..+++.+|+.
T Consensus       159 EIv~g~~T~~~~i~~~~~~~~~lgk~  184 (192)
T d1f0ya2         159 EVIKTPMTSQKTFESLVDFSKALGKH  184 (192)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence              222334567888999999999963

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.68  E-value=6.5e-16  Score=109.51  Aligned_cols=107  Identities=20%  Similarity=0.243  Sum_probs=85.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC---------------ceecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG---------------IRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~dvii~~v   66 (173)
                      ++||+|||+|.||+++|..|.++|++|.+|||++++.+.+.+.+.               ..+++..++++++|+||+++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            479999999999999999999999999999999999988876432               23567889999999999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN  113 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~  113 (173)
                      | ....+.++   +++.+++.++++|+..++.... ...+.+.+...
T Consensus        81 ~-~~~~~~~~---~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~  122 (184)
T d1bg6a2          81 P-AIHHASIA---ANIASYISEGQLIILNPGATGG-ALEFRKILREN  122 (184)
T ss_dssp             C-GGGHHHHH---HHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHT
T ss_pred             c-hhHHHHHH---HHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHHh
Confidence            9 45677887   5788999999988876654433 33444555443

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=2.4e-17  Score=121.82  Aligned_cols=144  Identities=12%  Similarity=0.034  Sum_probs=116.6

Q ss_pred             CeEEEEeCCh--hhHHHHH------HHHHCCCeEEEEcCChHHH-HHHHH------------------------------
Q 044797            3 SKVGFVGLDE--YSVDMAA------SLIRSGYKVQAFEISDPLV-DKFFM------------------------------   43 (173)
Q Consensus         3 ~~IgiiG~G~--mG~~ia~------~l~~~g~~V~~~d~~~~~~-~~~~~------------------------------   43 (173)
                      .++.++|.|.  ||..+++      +|.+.|+.|+..|.++++. +.+.+                              
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            4466777775  7777877      7889999999999997653 22110                              


Q ss_pred             ------cCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee
Q 044797           44 ------LGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        44 ------~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~  117 (173)
                            .|++.++++.++++++|+||+|+|.++.+.+++   +++.++++++++++|+||+++....++.+.+.+++++|
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence                  135567899999999999999999887788888   68999999999999999999999999999999899998


Q ss_pred             eece------------eeeeecCHhhHHHHHHHHHhhCCceeec
Q 044797          118 ILER------------MFLISSSIDCFTYLFLVKNEFFIDKKVN  149 (173)
Q Consensus       118 v~~~------------~~~~~g~~~~~~~~~~~~~~~g~~~~~g  149 (173)
                      +...            +...+++++.++++.++++.+|...++.
T Consensus       198 i~~hp~a~pe~~g~~li~~~~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         198 TSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             EECBCSSCTTTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             ECCCccCcCccccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence            7532            3344678889999999999999866653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=3.4e-15  Score=107.93  Aligned_cols=142  Identities=14%  Similarity=0.081  Sum_probs=101.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~dvi   62 (173)
                      |||+|||+|.+|.++|..|+++|++|++||.++++++.+.+.                    .....++..++++++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            699999999999999999999999999999999998876532                    123567788999999999


Q ss_pred             EEeccChh---------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc------CC--ce--ee----e
Q 044797           63 VVVISHVD---------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG------NL--TF--YI----L  119 (173)
Q Consensus        63 i~~v~~~~---------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~------~g--~~--~v----~  119 (173)
                      ++|+|.|.         .+..++..-..+.....++.+++..||+.|.+++++...+-+      .+  +.  |-    .
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            99999652         122232100123445668899999999999999877654321      11  22  21    1


Q ss_pred             ce----------eeeeec-CHhhHHHHHHHHHhhCC
Q 044797          120 ER----------MFLISS-SIDCFTYLFLVKNEFFI  144 (173)
Q Consensus       120 ~~----------~~~~~g-~~~~~~~~~~~~~~~g~  144 (173)
                      .+          ...+|+ ++++.+.++.+++.+..
T Consensus       161 ~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~  196 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDA  196 (202)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSS
T ss_pred             ccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence            11          235555 46778888888887753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.61  E-value=9.4e-16  Score=109.85  Aligned_cols=136  Identities=13%  Similarity=0.070  Sum_probs=93.7

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |.||+|||+|.||+++|..|.+.|++|++|+|+++..+.+.+.+              +..++++.++++++|+|++++|
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            35799999999999999999999999999999999998876532              3456788999999999999999


Q ss_pred             ChhhhhhhhcCccchhh-----cCCCCCEEEEcCCC-CHHHHHHHHHHHhcC----Cceeeece-------------eee
Q 044797           68 HVDQIDDIFFGHEGVLK-----GLQKGAVIILQSTI-LPSHMQKLEKTFTGN----LTFYILER-------------MFL  124 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~-----~l~~g~~ii~~st~-~~~~~~~l~~~l~~~----g~~~v~~~-------------~~~  124 (173)
                       .+.+++++   +++.+     .+.++..+++++-+ .+.+...+.+.+.+.    .+.++.++             +++
T Consensus        87 -s~~~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~vi  162 (189)
T d1n1ea2          87 -TQFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSI  162 (189)
T ss_dssp             -HHHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred             -HHHHHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEE
Confidence             56777777   33332     23456667776543 344444555555432    22233222             333


Q ss_pred             eecCHhhHHHHHHHHHh
Q 044797          125 ISSSIDCFTYLFLVKNE  141 (173)
Q Consensus       125 ~~g~~~~~~~~~~~~~~  141 (173)
                      .+.+.+..+.++.+|+.
T Consensus       163 As~~~~~a~~i~~lfst  179 (189)
T d1n1ea2         163 ASADINVARRLQRIMST  179 (189)
T ss_dssp             ECSSHHHHHHHHHHHSC
T ss_pred             EeCCHHHHHHHHHHhCC
Confidence            34455566667777653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.55  E-value=9.6e-15  Score=104.25  Aligned_cols=138  Identities=10%  Similarity=0.046  Sum_probs=99.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC-------------CceecChhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG-------------GIRSASPMDAGKD   58 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   58 (173)
                      +||+|||+|.||+.+|..++.+|++|++||++++.+++..+           .+             +..+.+ .+.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLS-YGDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESS-STTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccc-cccccc
Confidence            68999999999999999999999999999999987654321           11             112333 345788


Q ss_pred             CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeee
Q 044797           59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLIS  126 (173)
Q Consensus        59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~  126 (173)
                      +|+|+.++|.+..++.-++  .++.+..+++.+|.+.++..+.  .++.+.+..    .|.||+...        +..-.
T Consensus        84 adlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~  159 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISI--SLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEK  159 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSS
T ss_pred             cceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEeccccccH--HHHHHhccCchheEeeccccCcccCCeEEECCCCC
Confidence            9999999998877776665  4688888889888777655433  344454432    255665433        22334


Q ss_pred             cCHhhHHHHHHHHHhhCCc
Q 044797          127 SSIDCFTYLFLVKNEFFID  145 (173)
Q Consensus       127 g~~~~~~~~~~~~~~~g~~  145 (173)
                      .+++..+.+..+++.+|+.
T Consensus       160 T~~~~~~~~~~~~~~lgk~  178 (186)
T d1wdka3         160 SSDLAVATTVAYAKKMGKN  178 (186)
T ss_dssp             CCHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHcCCE
Confidence            5678889999999999963

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.48  E-value=8.1e-14  Score=98.84  Aligned_cols=89  Identities=10%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC--hHHHHHHHHcC-------------CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS--DPLVDKFFMLG-------------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~--~~~~~~~~~~g-------------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+|.||+++|..|.++|++|.+|.|.  ++..+.+.+.+             +...++..++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            69999999999999999999999999999884  44456654421             1235677888999999999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEc
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQ   95 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~   95 (173)
                       .+.+++++   +++.+.+++..+++.+
T Consensus        81 -s~~~~~~~---~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          81 -TDGVLPVM---SRILPYLKDQYIVLIS  104 (180)
T ss_dssp             -GGGHHHHH---HHHTTTCCSCEEEECC
T ss_pred             -hhhhHHHH---Hhhccccccceecccc
Confidence             67888888   5688888765444443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.48  E-value=5.8e-14  Score=100.57  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=92.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|++|..+|+.+...|.+|..||+..... .....+.....+++++++.||+|++++|.....+..+.  .+.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~--~~~  126 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DFT  126 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhhh--HHH
Confidence            589999999999999999999999999999875432 22334667778899999999999999997777777663  456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..++++.++|+++.+...+.+.+.+.+....+.
T Consensus       127 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1         127 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             HhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            7889999999999999888888999999876553

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.47  E-value=7.3e-14  Score=99.10  Aligned_cols=106  Identities=16%  Similarity=0.103  Sum_probs=90.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|.+|..+++.+...|.+|.+|||++..      .......++++++++||+|++++|..+..+.++.  .+.
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~--~~~  114 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQH  114 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccccccccc--cce
Confidence            58999999999999999999999999999998642      1234456889999999999999998777777773  467


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..++++.++|+++.+...+.+.+.+.+.+..+.
T Consensus       115 l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~  148 (181)
T d1qp8a1         115 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF  148 (181)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             eeeccccceEEeccccccccchhhhhhcccCcEE
Confidence            7889999999999998888888999998875543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.47  E-value=7.6e-14  Score=99.83  Aligned_cols=112  Identities=9%  Similarity=0.033  Sum_probs=94.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||||+|++|+.+++.+...|.+|..||+...........+.....+++++++.+|+|++++|..+.++.++.  .+.
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~--~~~  125 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KAT  125 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred             cceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheec--HHH
Confidence            689999999999999999999999999999876544444444556667899999999999999998777877773  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..++++.++|+++.+...+.+.+.+.++...+.
T Consensus       126 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~  159 (191)
T d1gdha1         126 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA  159 (191)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hhCcCCccEEEecCCccchhhHHHHHHHHcCCce
Confidence            7889999999999999888889999999876654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.47  E-value=9e-14  Score=99.26  Aligned_cols=112  Identities=11%  Similarity=0.015  Sum_probs=96.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||+|+|++|..+++.+...|.+|..||+.........+.+.....++.++++++|+|++++|.....+.++.  .+.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~--~~~  122 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DET  122 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhH--HHH
Confidence            589999999999999999999999999999876554555555677788899999999999999998877777774  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      ++.+++|.++|+++.+...+.+.+.+.+....+.
T Consensus       123 l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~  156 (188)
T d2naca1         123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLA  156 (188)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred             HHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence            7889999999999999888889999999876554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.45  E-value=5.2e-13  Score=95.62  Aligned_cols=114  Identities=14%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc------------------CCceecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML------------------GGIRSASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~dvii~   64 (173)
                      |||+|||+|.+|.++|..|. .|++|++||.++++++.+...                  ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            69999999999999998775 699999999999998876531                  11233455566778999999


Q ss_pred             eccChhhhhh------hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee
Q 044797           65 VISHVDQIDD------IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        65 ~v~~~~~~~~------v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~  117 (173)
                      |+|.+..-+.      .+....+......++.+++..||..|.+.+++.+.+....+.|
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~~  138 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIF  138 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEE
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhcc
Confidence            9996532111      1100001122345788999999999999999988887665554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.6e-14  Score=98.79  Aligned_cols=92  Identities=16%  Similarity=0.109  Sum_probs=72.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC-------ceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG-------IRSASPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      |||+|||+|.||+.++..|.+.|++|++++|++++.+.....+.       ....+..+....+|+||+++| ..+++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-a~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-AWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-GGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-ccchHHH
Confidence            69999999999999999999999999999999876543322211       223345567789999999999 5677888


Q ss_pred             hcCccchhhcCCCCCEEEEcCCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +   +.+.+.+.+++.|+...++
T Consensus        80 ~---~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V---KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H---HHHHTTSCTTSCEEEECSS
T ss_pred             H---HhhccccCcccEEeeccCc
Confidence            7   5677888889988887664

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.42  E-value=3.4e-13  Score=96.77  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=90.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|++|..+|+.+...|.+|.+||+.......  ..+ ....+++++++++|+|++++|.....+..+.  .+.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~-~~~~~l~~~l~~sDii~~~~plt~~T~~li~--~~~  118 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKG-YYVDSLDDLYKQADVISLHVPDVPANVHMIN--DES  118 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTT-CBCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cce-eeeccccccccccccccccCCcccccccccc--HHH
Confidence            68999999999999999999999999999987654322  223 3356799999999999999998777777763  356


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..++++.++|+++.+...+.+.+.+.+....+.
T Consensus       119 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  152 (197)
T d1j4aa1         119 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  152 (197)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhhCCccEEEecCchhhhhhHHHHHHHhcccch
Confidence            7889999999999998888888999999875553

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=6.8e-13  Score=94.28  Aligned_cols=110  Identities=18%  Similarity=0.111  Sum_probs=92.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++||+|+|.+|..+++.+...|.+|.+||+...+... ...+.. ..+.+++++.||+|++++|..+.++..+.  .+.
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-~~~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin--~~~  120 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARA-AQLGIE-LLSLDDLLARADFISVHLPKTPETAGLID--KEA  120 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHH-HHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHH-hhcCce-eccHHHHHhhCCEEEEcCCCCchhhhhhh--HHH
Confidence            58999999999999999999999999999998655332 333444 45789999999999999998888887773  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++++++|+++.+...+.+.+.+.+....+.
T Consensus       121 l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~  154 (184)
T d1ygya1         121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVR  154 (184)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             HhhhCCCceEEEecchhhhhhHHHHHHHhcCcEe
Confidence            7889999999999999888889999999876554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.37  E-value=9.4e-13  Score=94.66  Aligned_cols=108  Identities=17%  Similarity=0.110  Sum_probs=89.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||||+|++|+.+++.+...|.+|.+||+.+....   ... ....+.+++++.||+|++++|.....+..+.  .+.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~-~~~~~l~~l~~~~D~v~~~~plt~~T~~li~--~~~  119 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPD-FDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA  119 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTT-CEECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhh---hcc-hhHHHHHHHHHhcccceeeeccccccccccc--HHH
Confidence            5899999999999999999999999999998765321   112 2345789999999999999998777777763  457


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..+++++++|+++.+...+.+.+.+.+....+.
T Consensus       120 l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~  153 (199)
T d1dxya1         120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA  153 (199)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             hhccCCceEEEecccHhhhhhHHHHHHHhcCCcc
Confidence            7889999999999999888889999999865553

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.6e-12  Score=92.71  Aligned_cols=108  Identities=11%  Similarity=0.135  Sum_probs=90.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++|||+|+|++|..+++.+...|.+|..||+.....    ........+.+++++.+|+|++++|-.+..+.++.  .+.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~--~~~  118 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AKE  118 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HHH
T ss_pred             eEEEEeecccchhhhhhhcccccceEeeccccccch----hhhhhhhhhHHHHHhhccceeecccCCcchhhhcc--HHH
Confidence            589999999999999999999999999999875421    11334556899999999999999998777777773  467


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                      +..++++.++|+++.+...+.+.|.+.+....+.
T Consensus       119 l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~  152 (188)
T d1sc6a1         119 ISLMKPGSLLINASRGTVVDIPALADALASKHLA  152 (188)
T ss_dssp             HHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             HhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence            7889999999999999888889999999876554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.14  E-value=1.1e-10  Score=81.39  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=78.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC-c--------eecChhhhhcCCCEEEEeccChhhh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG-I--------RSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-~--------~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      .++|.|||+|.||..+|++|.+.|++|++|||+.++++.+.+... .        ......+.+...|+++.++|.... 
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~-   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH-   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh-
Confidence            478999999999999999999999999999999999999877421 1        112334557788999999884332 


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      ..+.      ......+..+++.+...+ ....+.+.....+..++.
T Consensus        81 ~~~~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  120 (182)
T d1e5qa1          81 ATVI------KSAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN  120 (182)
T ss_dssp             HHHH------HHHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred             hHHH------HHHHhhccceeecccCcH-HHHHHHHHhccccceeeh
Confidence            2222      223445678888876654 455666666666655543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2.4e-10  Score=79.18  Aligned_cols=109  Identities=13%  Similarity=0.078  Sum_probs=81.8

Q ss_pred             CeEEEEeCChhhHH-HHHHHHHC-CCeE-EEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVD-MAASLIRS-GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      +||||||+|.||.. ....+... +.++ .++|+++++.+.+.+. ++...++.+++.++.|+|++|+|+..+.+.+.  
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~--   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence            68999999999986 56666654 5665 5889999988776553 77788888998999999999999766654443  


Q ss_pred             ccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           79 HEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                           ..++.|+.++..  -+.++.+.+++.+..+++++.+.
T Consensus        80 -----~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~  116 (164)
T d1tlta1          80 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLM  116 (164)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             -----ccccccceeeccccccCCHHHHHHHHHHHHHcCCcEE
Confidence                 345567666543  34567888899998888887543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=5.3e-10  Score=74.74  Aligned_cols=107  Identities=17%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhh-hcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDA-GKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~-~~~~dvii~~v~~~~~~~~   74 (173)
                      +++.|+|+|++|..+++.|.+.|++|+++|.++++.+.+.+.+...       .+.+.++ ++++|.++++++++.....
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            4789999999999999999999999999999999999988776432       1112233 6789999999986544333


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +.   ..+........++.-..  .+..    .+.++..|+.++
T Consensus        81 ~~---~~~~~~~~~~~iiar~~--~~~~----~~~l~~~Gad~v  115 (134)
T d2hmva1          81 LT---TLLLKELDIPNIWVKAQ--NYYH----HKVLEKIGADRI  115 (134)
T ss_dssp             HH---HHHHHHTTCSEEEEECC--SHHH----HHHHHHHTCSEE
T ss_pred             HH---HHHHHHcCCCcEEeecc--cHhH----HHHHHHCCCCEE
Confidence            33   12334444444444443  2332    334445566543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.05  E-value=1.9e-09  Score=75.88  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=91.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHc-C----CceecChhhhhc--CCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFML-G----GIRSASPMDAGK--DVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~--~~dvii~~v~~~~~~~   73 (173)
                      .||||||+|.||...++.+... +++++ ++|+++++.+.+.+. +    ....++.+++++  +.|+|++++|+..+.+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            5899999999999999999876 56765 789999988776553 3    346778888874  5799999999766654


Q ss_pred             hhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhhCCcee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKK  147 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  147 (173)
                      .+.       ..++.|..++-.  -+.+....+++.+..+++++.+.......  .+ ..+..++.+.+.+|.+..
T Consensus        82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r--~~-~~~~~~k~li~~iG~I~~  147 (184)
T d1ydwa1          82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWV--HP-QEACMVREFARLVGEIKN  147 (184)
T ss_dssp             HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGG--GC-HHHHHHHHHTTCC-----
T ss_pred             hhh-------hhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeee--cC-hHHHHHHHHHHhhCCeEE
Confidence            443       345667776644  23467788899998888887654332221  12 234556666666675443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.05  E-value=1e-09  Score=76.08  Aligned_cols=109  Identities=9%  Similarity=0.011  Sum_probs=78.4

Q ss_pred             CCeEEEEeCChhhHH-HHHHHHHC-CCeEEEEcCChHHHHHHHHc-CC-ceecChhhhhc-CCCEEEEeccChhhhhhhh
Q 044797            2 ASKVGFVGLDEYSVD-MAASLIRS-GYKVQAFEISDPLVDKFFML-GG-IRSASPMDAGK-DVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~-~~dvii~~v~~~~~~~~v~   76 (173)
                      ++||||||+|.+|.. ....+.+. +.++.++|+++++.+.+.+. +. ...++.+++++ +.|+|++|+|+..+.+.+.
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~   80 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA   80 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc
Confidence            479999999999976 56666655 46888999999998887664 44 34566777765 6899999999766655443


Q ss_pred             cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCcee
Q 044797           77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFY  117 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~  117 (173)
                             ..++.|+.++..  -+.+....+++.+...+++..+
T Consensus        81 -------~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          81 -------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             -------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             -------cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence                   234455555433  2446677889999888888764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.98  E-value=2.3e-09  Score=74.10  Aligned_cols=90  Identities=21%  Similarity=0.174  Sum_probs=74.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|||.|.-|.+-|.+|+.+|.+|++--|... ..++..+.|.++ .+.+|+++.+|+|.+.+||. .-.+++.  +.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~-~q~~vy~--~~   92 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDE-FQGRLYK--EE   92 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHH-HHHHHHH--HH
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchH-HHHHHHH--Hh
Confidence            6899999999999999999999999998877654 456667778776 46999999999999999954 4456662  36


Q ss_pred             hhhcCCCCCEEEEcC
Q 044797           82 VLKGLQKGAVIILQS   96 (173)
Q Consensus        82 i~~~l~~g~~ii~~s   96 (173)
                      +.+++++|+.+.-.-
T Consensus        93 I~p~lk~g~~L~FaH  107 (182)
T d1np3a2          93 IEPNLKKGATLAFAH  107 (182)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             hhhhcCCCcEEEEec
Confidence            889999999887653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.97  E-value=9.6e-10  Score=75.89  Aligned_cols=68  Identities=21%  Similarity=0.134  Sum_probs=56.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCc--eecChhhhhcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGI--RSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      .+|.|||+|.||..++++|...|. ++++++|+.++.+.+.+. +..  ..++..+.+.++|+||.|++.+.
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~   96 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH   96 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence            589999999999999999999997 699999999998877664 543  34466777889999999997543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.8e-09  Score=73.34  Aligned_cols=100  Identities=15%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      ++++|+|.|.+|..+|+.++..|.+|.+||++|-+.-+..-.|.++. +.++++..+|++++++....    ++.  .+-
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~----vI~--~eh   97 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCID----IIL--GRH   97 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSC----SBC--HHH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCcc----chh--HHH
Confidence            68999999999999999999999999999999876544444566654 68899999999999987433    221  234


Q ss_pred             hhcCCCCCEEEEcCCCCHHH-HHHHHHH
Q 044797           83 LKGLQKGAVIILQSTILPSH-MQKLEKT  109 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~-~~~l~~~  109 (173)
                      ++.+++|.++.+.+....+. ...|.+.
T Consensus        98 ~~~MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          98 FEQMKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             HTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             HHhccCCeEEEEeccccceecHHHHhhc
Confidence            57899999999987654433 4555554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.95  E-value=1.3e-08  Score=67.72  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCcee----cChh---hh-hcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRS----ASPM---DA-GKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~   73 (173)
                      |||.|+|+|++|..+++.|.+.|++|++.|+++++.+++.+. +....    .+.+   ++ ++++|.++.+++++.. .
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~-N   79 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV-N   79 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-H
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH-H
Confidence            699999999999999999999999999999999999988764 54432    1222   22 5689999999886542 2


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      -.+   ......+.+..++.-...  +..    .+.+.+.|+.++
T Consensus        80 ~~~---~~~~k~~~~~~iI~~~~~--~~~----~~~l~~~G~d~v  115 (132)
T d1lssa_          80 LMS---SLLAKSYGINKTIARISE--IEY----KDVFERLGVDVV  115 (132)
T ss_dssp             HHH---HHHHHHTTCCCEEEECSS--TTH----HHHHHHTTCSEE
T ss_pred             HHH---HHHHHHcCCceEEEEecC--HHH----HHHHHHCCCCEE
Confidence            221   123344556666655443  222    344555666543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=8.3e-09  Score=72.36  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             CC-CeEEEEeCChhhHH-HHHHHHHCC--CeEE-EEcCChHHHHHHHHc-CC-ceecChhhhhc--CCCEEEEeccChhh
Q 044797            1 MA-SKVGFVGLDEYSVD-MAASLIRSG--YKVQ-AFEISDPLVDKFFML-GG-IRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         1 m~-~~IgiiG~G~mG~~-ia~~l~~~g--~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      |. .||||||+|.+|.. .+..+.+..  +++. ++|+++++.+.+.+. +. ...++.+++++  +.|+|++|+|+..+
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence            44 48999999999987 567776644  4554 889999998887654 54 45788999876  57999999996655


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      .+.+.       ..++.|+.++..  .+.+..+.+++.+..++++..+.
T Consensus        81 ~~~~~-------~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~  122 (181)
T d1zh8a1          81 LPFIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY  122 (181)
T ss_dssp             HHHHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred             ccccc-------cccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            44333       345567766654  23567778888888888877543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.88  E-value=1.3e-09  Score=75.92  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=72.9

Q ss_pred             CC-CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            1 MA-SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         1 m~-~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      |+ +||||||+|+||..+++.+.+. ++++ .++|+++++..   ..+.....+..+..++.|+|++|+|+..+.+.+  
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a--   75 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQ--   75 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHH--
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHH--
Confidence            65 5899999999999999999875 4665 47888865422   123444556667778999999999976554333  


Q ss_pred             CccchhhcCCCCCEEEEcCC---CCHHHHHHHHHHHhcCCce
Q 044797           78 GHEGVLKGLQKGAVIILQST---ILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st---~~~~~~~~l~~~l~~~g~~  116 (173)
                           .+.+..|+.++.+..   ..++..+++.+..+..+..
T Consensus        76 -----~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~  112 (170)
T d1f06a1          76 -----APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV  112 (170)
T ss_dssp             -----HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             -----HHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCce
Confidence                 356778988775432   2345556676666655543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.87  E-value=5.5e-09  Score=74.57  Aligned_cols=109  Identities=12%  Similarity=0.023  Sum_probs=79.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|+|.|+|++|..+|+.|.+.|.+|+++|.+++++......+....+ .++++ .+||+++-|-......++..     
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a-----  101 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVA-----  101 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHHHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHHHH-----
Confidence            589999999999999999999999999999999999888888877654 45554 58999988765333222222     


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                        +.++ -++|+... ..|-+.+...+.|.++|+.|+.+.
T Consensus       102 --~~i~-ak~i~e~A-N~p~~~~~~~~~L~~rgI~~iPD~  137 (201)
T d1c1da1         102 --RTLD-CSVVAGAA-NNVIADEAASDILHARGILYAPDF  137 (201)
T ss_dssp             --HHCC-CSEECCSC-TTCBCSHHHHHHHHHTTCEECCHH
T ss_pred             --hhhh-hheeeccC-CCCcchhhHHHHhcccceEEEehh
Confidence              2332 24454443 344444556778889999998654

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.83  E-value=9e-09  Score=73.46  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC------CeEEEEcC-ChHHHHHHHHcCCce----ecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG------YKVQAFEI-SDPLVDKFFMLGGIR----SASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g------~~V~~~d~-~~~~~~~~~~~g~~~----~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      +||+|||.|.-|.+-|.+|+.+|      ..|.+--| .....++..+.|...    ..+.+|+++.+|+|.+.+|| +.
T Consensus        45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPD-e~  123 (226)
T d1qmga2          45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISD-SA  123 (226)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCH-HH
T ss_pred             CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecch-HH
Confidence            68999999999999999999955      55665544 345556677777652    44688999999999999995 44


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      -.+++   +++.+++++|+.+.-.-
T Consensus       124 Q~~vy---~~I~p~Lk~G~~L~FaH  145 (226)
T d1qmga2         124 QADNY---EKVFSHMKPNSILGLSH  145 (226)
T ss_dssp             HHHHH---HHHHHHSCTTCEEEESS
T ss_pred             HHHHH---HHHHHhcCCCceeeecc
Confidence            46677   46899999999887653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.80  E-value=1.6e-08  Score=73.20  Aligned_cols=109  Identities=8%  Similarity=0.131  Sum_probs=78.9

Q ss_pred             eEEEEeCChhhHH-HHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCc-----eecChhhhhc--CCCEEEEeccChhhh
Q 044797            4 KVGFVGLDEYSVD-MAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGI-----RSASPMDAGK--DVSALVVVISHVDQI   72 (173)
Q Consensus         4 ~IgiiG~G~mG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~-----~~~~~~~~~~--~~dvii~~v~~~~~~   72 (173)
                      ||||||+|.||.. +...+... +.+|. ++|+++++.+.+.+. ++.     ..++.+++++  +.|+|++++|+..+.
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~  114 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHA  114 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhhh
Confidence            8999999999974 55666554 56665 889999998877654 442     3567888876  578999999976655


Q ss_pred             hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeee
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      +.+.       ..++.|+.++..  -+.+++...++.+..+++++.+..
T Consensus       115 ~~~~-------~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v  156 (221)
T d1h6da1         115 EFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMI  156 (221)
T ss_dssp             HHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             hHHH-------HhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEE
Confidence            4443       345667777665  345778888888888877776543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.79  E-value=3.3e-09  Score=74.20  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-------CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-------GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|+ |.|.||.++|+.|+++|++|.+|+|++++++.+.++.       .....+........+......+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhhee
Confidence            699999 8999999999999999999999999999988776531       1122233333444555555554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.77  E-value=8.7e-09  Score=71.04  Aligned_cols=93  Identities=17%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc---CCcee----cChhhhhcCCCEEEEeccChh-hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML---GGIRS----ASPMDAGKDVSALVVVISHVD-QIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g~~~~----~~~~~~~~~~dvii~~v~~~~-~~~~   74 (173)
                      .|+.|||.|..|..-++.....|.+|+++|.++++.+.+...   .+...    ...++.++++|+||.++--|. ....
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~  112 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI  112 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCe
Confidence            489999999999999999999999999999999999887664   22221    134567889999999874332 2233


Q ss_pred             hhcCccchhhcCCCCCEEEEcCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ++.  ++..+.++||.+|+|.+.
T Consensus       113 lIt--~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         113 LVP--ASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CBC--HHHHTTSCTTCEEEETTC
T ss_pred             eec--HHHHhhcCCCcEEEEeec
Confidence            332  356788999999999975

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.73  E-value=4.3e-08  Score=67.02  Aligned_cols=92  Identities=16%  Similarity=0.053  Sum_probs=74.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      +++.|+|.|..|..+|++++..|..|++++++|-+.-+..-.|.++ .+.+++++.+|++|+++....    ++.  .+-
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~----vI~--~~h   96 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVD----VIK--LEH   96 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSS----SBC--HHH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCc----ccc--HHH
Confidence            5889999999999999999999999999999996654444457665 578999999999999998543    221  234


Q ss_pred             hhcCCCCCEEEEcCCCCHH
Q 044797           83 LKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~  101 (173)
                      .+.+++|.++.+.+....+
T Consensus        97 ~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          97 LLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             HTTCCTTCEEEECSSTTTS
T ss_pred             HHHhhCCeEEEeccccchh
Confidence            5789999999999876544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.72  E-value=3.9e-08  Score=68.60  Aligned_cols=93  Identities=16%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----------------------------Chh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----------------------------SPM   53 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----------------------------~~~   53 (173)
                      -+|.|||.|..|..-++-....|..|+++|.++++.+++.+.+....+                             ...
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~  109 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  109 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999998887543221                             012


Q ss_pred             hhhcCCCEEEEeccChh-hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           54 DAGKDVSALVVVISHVD-QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        54 ~~~~~~dvii~~v~~~~-~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +.++++|+||.++--|. ....++.  ++..+.++||.+|+|.+.
T Consensus       110 ~~l~~aDlVI~talipG~~aP~lit--~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         110 KELVKTDIAITTALIPGKPAPVLIT--EEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCSC--HHHHTTSCTTCEEEETTG
T ss_pred             HHHHhhhhheeeeecCCcccceeeh--HHHHHhcCCCcEEEEEee
Confidence            34678999999874332 2223332  456788999999999964

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.65  E-value=1.4e-07  Score=63.79  Aligned_cols=64  Identities=17%  Similarity=0.125  Sum_probs=48.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHH----H----cC-C-ceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFF----M----LG-G-IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~----~----~g-~-~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|++|+.+|..|+..|  .++.++|+++++.+...    +    .+ . ....++ +.+++||+|+++..
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag   81 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAG   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecc
Confidence            69999999999999999999887  58999999998764321    1    11 1 223344 45689999999864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.64  E-value=6.5e-08  Score=73.67  Aligned_cols=91  Identities=20%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-C-CeEEEEcCChHHHHHHHH----cCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-G-YKVQAFEISDPLVDKFFM----LGGIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      .+++|||+|.++...++.+... . .+|.+|+|++++.+.+.+    .+.....+..+++.++|+|++|++...   .++
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~---P~~  202 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK---PVV  202 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS---CCB
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc---ccc
Confidence            5799999999999999988753 3 489999999999877654    366677788888999999999998543   344


Q ss_pred             cCccchhhcCCCCCEEEEcCCCCHH
Q 044797           77 FGHEGVLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~~~~  101 (173)
                      .     .+.+++|.+|..+++..|.
T Consensus       203 ~-----~~~l~~G~hv~~iGs~~p~  222 (320)
T d1omoa_         203 K-----AEWVEEGTHINAIGADGPG  222 (320)
T ss_dssp             C-----GGGCCTTCEEEECSCCSTT
T ss_pred             c-----hhhcCCCCeEeecCCcccc
Confidence            1     2468999999999887664

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.64  E-value=1.3e-07  Score=64.18  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=49.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HH------cCCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FM------LGGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~------~g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||+|||+|++|+.+|..|...+.  ++.++|+++++++..    .+      .......+..+.+++||+|+++..
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            489999999999999999998774  799999999875432    11      123344445577899999999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.58  E-value=3.1e-07  Score=61.76  Aligned_cols=64  Identities=6%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHH-H---------cCCce-ecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFF-M---------LGGIR-SASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~-~---------~g~~~-~~~~~~~~~~~dvii~~v   66 (173)
                      |||+|||+|++|++++..+...+  .++.++|+++++.+... +         ...+. .++..+.++++|+++++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence            59999999999999999999888  48999999987764321 1         11222 234456789999999986

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.55  E-value=2.5e-07  Score=63.27  Aligned_cols=92  Identities=15%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             CC--CeEEEEeCChhhHH-HHHHHHHCC-CeE-EEEcCChHH--HHHHHHcCCceecC-hhhhh-----cCCCEEEEecc
Q 044797            1 MA--SKVGFVGLDEYSVD-MAASLIRSG-YKV-QAFEISDPL--VDKFFMLGGIRSAS-PMDAG-----KDVSALVVVIS   67 (173)
Q Consensus         1 m~--~~IgiiG~G~mG~~-ia~~l~~~g-~~V-~~~d~~~~~--~~~~~~~g~~~~~~-~~~~~-----~~~dvii~~v~   67 (173)
                      |+  .||||||+|.+|.. +.+.+.... .++ .+.+|+++.  .+...+.++....+ .++++     .+.|+|++++|
T Consensus         1 M~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATp   80 (157)
T d1nvmb1           1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (157)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CCCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCC
Confidence            55  47999999999986 556665544 355 456887653  34455567665443 33332     36899999999


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ...+.+...     ....++.|..++|.|+
T Consensus        81 ag~h~~~~~-----~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          81 ASAHVQNEA-----LLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHH-----HHHHHCTTCEEEECST
T ss_pred             chhHHHhHH-----HHHHHHcCCEEEEccc
Confidence            666665443     2345688999999986

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=8.8e-08  Score=73.33  Aligned_cols=93  Identities=19%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc-----CC--ceecChhhhhcCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML-----GG--IRSASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~--~~~~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      .+++|||+|..+...++.+.. .+ .+|.+|+|++++.+++.+.     |+  ..+++.+++++++|+|++|++++. ..
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s-~~  207 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-YA  207 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-EE
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC-CC
Confidence            579999999999999988764 34 4799999999988876542     43  458899999999999999987432 23


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~  101 (173)
                      .++.     .+.++||.+|..+++..|.
T Consensus       208 Pv~~-----~~~l~pG~hI~aiGs~~p~  230 (340)
T d1x7da_         208 TIIT-----PDMLEPGMHLNAVGGDCPG  230 (340)
T ss_dssp             EEEC-----GGGCCTTCEEEECSCCBTT
T ss_pred             cccc-----hhhcCCCCEEeecccchhh
Confidence            3442     2468899999988876663

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.50  E-value=2.9e-07  Score=63.51  Aligned_cols=112  Identities=14%  Similarity=0.041  Sum_probs=75.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChh--hhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVD--QIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~--~~~~v~~~   78 (173)
                      ++|.|+|+|.++.+++..|.+.|. +|++++|++++.+.+.+. +.....+..  ..++|+||-|+|-.-  .....-. 
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~l-   94 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL-   94 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC-
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCccccccccc-
Confidence            579999999999999999999996 799999999999887664 444333322  357899999998321  1111100 


Q ss_pred             ccch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           79 HEGV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        79 ~~~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                        .+ ...++++.+++|..-.... + .+.+..++.|...++.-
T Consensus        95 --~~~~~~~~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~i~Gl  134 (167)
T d1npya1          95 --AFPKAFIDNASVAFDVVAMPVE-T-PFIRYAQARGKQTISGA  134 (167)
T ss_dssp             --SSCHHHHHHCSEEEECCCSSSS-C-HHHHHHHHTTCEEECHH
T ss_pred             --cccHhhcCCcceEEEEeeccCC-C-HHHHHHHHCCCeEEECH
Confidence              01 1224567899998654333 3 24555667888766543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.50  E-value=4.5e-07  Score=61.79  Aligned_cols=65  Identities=12%  Similarity=0.071  Sum_probs=49.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|++|+.+|..+...+. ++.++|.++++++....        .+    .....+.+++++++|+|+++..
T Consensus         8 ~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            699999999999999998887774 89999999876643211        11    1234456678899999999873

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.49  E-value=4.3e-07  Score=61.07  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHH----cC----CceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFM----LG----GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~----~g----~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+|++|+++|..+...|.  ++.++|+++++.+.    +.+    ..    +....+ .+.++++|+|+++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEecc
Confidence            699999999999999999987773  79999999987643    111    11    122334 467889999999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=3.6e-07  Score=56.44  Aligned_cols=64  Identities=19%  Similarity=0.155  Sum_probs=50.9

Q ss_pred             CeEEEEeCChhhH-HHHHHHHHCCCeEEEEcCCh-HHHHHHHHcCCceec-ChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSV-DMAASLIRSGYKVQAFEISD-PLVDKFFMLGGIRSA-SPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~-~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v   66 (173)
                      |||-|||.|-+|. ++|+.|.+.|++|+++|+++ +..+++.+.|++... ...+-++++|+||...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            6999999999998 78999999999999999875 556778888987643 2234467789887753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.47  E-value=1.5e-06  Score=58.47  Aligned_cols=65  Identities=14%  Similarity=0.105  Sum_probs=49.0

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCC---------ceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGG---------IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~---------~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||+|||+ |++|+++|..|...+.  ++.++|.++.+.+.+.-...         ....+..+.+++||+|+++..
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence            48999995 9999999999998884  79999998876655432221         123345677899999999853

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=3e-07  Score=61.68  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-------c--CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM-------L--GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~-------~--g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||+|++|+.++..+...+  .++..+|+++++++....       .  ......+..+.++++|+|+++..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecc
Confidence            69999999999999999888777  489999999887653211       0  12333444566899999999863

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=1.4e-06  Score=60.09  Aligned_cols=108  Identities=12%  Similarity=0.009  Sum_probs=73.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCceecChhh-hhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGIRSASPMD-AGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~-~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++|.|+|+|..+.+++..|.+.|.+|++++|++++.+.+.+.    +.....+..+ ...++|+||.|+|.... .+.. 
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~-~~~~-   96 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIP-   96 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCC-
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc-cCCC-
Confidence            589999999999999999999999999999999998887653    2111122222 24578999999985432 1111 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF  116 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~  116 (173)
                        .--...++++.++.|..-....+  .+.+..+.+|..
T Consensus        97 --~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~  131 (170)
T d1nyta1          97 --AIPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGSK  131 (170)
T ss_dssp             --CCCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTCC
T ss_pred             --CCcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCCC
Confidence              11123577889999997543333  344555666764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.43  E-value=1.7e-06  Score=59.21  Aligned_cols=66  Identities=12%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHHc----C--CceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFML----G--GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~----g--~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .+||+|||+|++|+.+|..+...|.  ++.++|+++++.+.    +.+.    +  ........+.+++||+|+++..
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg   97 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAG   97 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecC
Confidence            3699999999999999999999986  89999999887643    2111    1  1122333466889999999763

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.42  E-value=6.8e-07  Score=60.31  Aligned_cols=66  Identities=21%  Similarity=0.256  Sum_probs=49.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHH----H----cC--CceecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFF----M----LG--GIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~----~----~g--~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .+||+|||+|++|+.+|..|...|  .++.++|+++++.+...    +    ..  .....+..+.+++||+|+++..
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG   78 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG   78 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence            379999999999999999998877  48999999998764321    1    11  2223333456899999999865

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.40  E-value=5e-07  Score=65.39  Aligned_cols=110  Identities=15%  Similarity=0.041  Sum_probs=77.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|.|-|+|++|+.+|+.|.+.|.+|++.|.++++++.+... |....+..+-+-.+||+++-|--.....++..     
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~~-----  114 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTI-----  114 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBSTTHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccccccccChHHh-----
Confidence            589999999999999999999999999999999998877664 65555433334458999999876433222222     


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                        +.++ -++|+...+..| +..+..+.|.++|+.|+.+.
T Consensus       115 --~~l~-ak~Ive~ANn~~-t~~ea~~~L~~rGI~~iPD~  150 (230)
T d1leha1         115 --PQLK-AKVIAGSADNQL-KDPRHGKYLHELGIVYAPDY  150 (230)
T ss_dssp             --HHCC-CSEECCSCSCCB-SSHHHHHHHHHHTCEECCHH
T ss_pred             --hccC-ccEEEecccCCC-CCchHHHHHHhhCcEEEeeh
Confidence              2232 245555554433 33456677888999987653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.8e-06  Score=59.41  Aligned_cols=88  Identities=15%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhh--------cCCCEEEEeccC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG--------KDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~--------~~~dvii~~v~~   68 (173)
                      .+|.|+|+|.+|...++.+...|. +|+++|+++++.+.+++.|+....     +..+..        ..+|++|-|+..
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~  107 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA  107 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence            478999999999999999999998 799999999999998888865321     222221        257999999986


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +..++..+       ..++++..++..+.
T Consensus       108 ~~~~~~a~-------~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         108 EASIQAGI-------YATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHHHH-------HHSCTTCEEEECSC
T ss_pred             chhHHHHH-------HHhcCCCEEEEEec
Confidence            65554443       45667777666654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.38  E-value=5.7e-07  Score=58.35  Aligned_cols=106  Identities=15%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             CeEEEEe----CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVG----LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG----~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||    -++.|..+.++|.+.|++|+..+++.+.+     .|.....++.++-+..|++++++| +..+.+++  
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l--   73 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA--   73 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH--
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeC-HHHHHHHH--
Confidence            5799999    46899999999999999999888765432     367777888888888999999999 66677776  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM  122 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~  122 (173)
                       ++..+. ....+++..++..    +++.+.++++|++++...+
T Consensus        74 -~~~~~~-g~k~v~~~~g~~~----~~~~~~a~~~gi~vigpnC  111 (116)
T d1y81a1          74 -KEAVEA-GFKKLWFQPGAES----EEIRRFLEKAGVEYSFGRC  111 (116)
T ss_dssp             -HHHHHT-TCCEEEECTTSCC----HHHHHHHHHHTCEEECSCC
T ss_pred             -HHHHhc-CCceEEeccchhh----HHHHHHHHHcCCEEEcCCC
Confidence             233322 2334555544433    4567778888998876543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.37  E-value=1.7e-06  Score=58.01  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=47.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH-H---------cCC--ceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF-M---------LGG--IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~-~---------~g~--~~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|++|+++|..|...+. ++..+|+++++.+... +         ...  ..+.+++ .++++|+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeee
Confidence            699999999999999999887774 8999999887654321 1         111  2234444 4789999999874

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=98.37  E-value=8.1e-07  Score=55.64  Aligned_cols=64  Identities=17%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             CeEEEEeCChhh-HHHHHHHHHCCCeEEEEcCC-hHHHHHHHHcCCceec-ChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYS-VDMAASLIRSGYKVQAFEIS-DPLVDKFFMLGGIRSA-SPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG-~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v   66 (173)
                      ++|-|||.|..| +++|+.|.+.|++|+++|+. .+..+.+.+.|+.... ...+-+++.|+||...
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            689999999999 67799999999999999986 4555777788876543 2234467788877653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.37  E-value=1.9e-06  Score=59.06  Aligned_cols=88  Identities=10%  Similarity=-0.052  Sum_probs=63.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee---c----Chhhh---h-----cCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS---A----SPMDA---G-----KDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~----~~~~~---~-----~~~dvii~~v~   67 (173)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++.+.+++.|....   +    +..+.   +     ..+|++|-|+.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g  107 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG  107 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCC
Confidence            47899999999999999999999999999999999998888775321   1    11111   1     24788888887


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .+..++..+       +.++++..++..+.
T Consensus       108 ~~~~~~~a~-------~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         108 NEKCITIGI-------NITRTGGTLMLVGM  130 (170)
T ss_dssp             CHHHHHHHH-------HHSCTTCEEEECSC
T ss_pred             ChHHHHHHH-------HHHhcCCceEEEec
Confidence            655444443       45666666666653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.36  E-value=1.5e-06  Score=58.35  Aligned_cols=65  Identities=12%  Similarity=0.169  Sum_probs=48.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHHc----C-Cc-eecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFML----G-GI-RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~----g-~~-~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||+|||+|++|+.+|..+...+.  ++.++|+++++.+.    +.+.    + .. ...+..+.++++|+|+++.-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG   78 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAG   78 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecc
Confidence            589999999999999999998885  89999999987643    2221    1 11 12233456889999999864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.4e-07  Score=66.90  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~   67 (173)
                      |+||.|+| .|.+|+++++.|+++|++|+++.|++++.......+++.       .++..++++++|+||.++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g   76 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence            46899998 699999999999999999999999998865443333332       2344577889999999875

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=5.6e-06  Score=57.10  Aligned_cols=66  Identities=18%  Similarity=0.291  Sum_probs=48.6

Q ss_pred             CCeEEEEeCChhhHHHH--HHHHH----CCCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797            2 ASKVGFVGLDEYSVDMA--ASLIR----SGYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia--~~l~~----~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii   63 (173)
                      .|||+|||+|..|...+  ..++.    .+.++..+|+++++++....        .+    +..+++..++++++|+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            47999999999997643  33432    24699999999998764211        11    235678899999999999


Q ss_pred             Eecc
Q 044797           64 VVIS   67 (173)
Q Consensus        64 ~~v~   67 (173)
                      .+..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=2.2e-06  Score=59.34  Aligned_cols=68  Identities=16%  Similarity=0.100  Sum_probs=45.9

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-CeEE-EEcCChHHH-HHHHHcC------------------CceecChhhhhcCC
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-YKVQ-AFEISDPLV-DKFFMLG------------------GIRSASPMDAGKDV   59 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-~~V~-~~d~~~~~~-~~~~~~g------------------~~~~~~~~~~~~~~   59 (173)
                      |++||||.|+|++|..+.+.+..+. .++. +.|++++.. ..+...+                  .....+..++.+++
T Consensus         1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            8999999999999999999998655 5654 556665432 2233322                  22223445556678


Q ss_pred             CEEEEeccC
Q 044797           60 SALVVVISH   68 (173)
Q Consensus        60 dvii~~v~~   68 (173)
                      |+|+.|++.
T Consensus        81 DvViEcTG~   89 (172)
T d2czca2          81 DIIVDATPG   89 (172)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            888888874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.5e-06  Score=58.64  Aligned_cols=114  Identities=14%  Similarity=0.068  Sum_probs=74.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--------CCc--ee-----cChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--------GGI--RS-----ASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~--~~-----~~~~~~~~~~dvii~~v   66 (173)
                      ++|.|+|+|.+|.+++..|.+.|. +++++||++++.+++...        ...  ..     .+..+.+..+|+||.|+
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T   98 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT   98 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence            589999999999999999999986 789999998776654321        111  11     12334567899999999


Q ss_pred             cChhhh--hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           67 SHVDQI--DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        67 ~~~~~~--~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      |....-  .+.+.   .-...++++.+++|..-. |..+ .+.+..+..|..+++.-
T Consensus        99 p~G~~~~~~~~~~---~~~~~~~~~~~v~Di~Y~-p~~T-~ll~~a~~~g~~~i~Gl  150 (182)
T d1vi2a1          99 KVGMKPLENESLV---NDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTIDGY  150 (182)
T ss_dssp             STTSTTSCSCCSC---CCGGGSCTTCEEEECCCS-SSSC-HHHHHHHTTTCEEECHH
T ss_pred             CCccccccchhhh---hHHHhhhcchhhHHhhcC-cccc-HHHHHHHHCcCeEeccH
Confidence            843210  11110   012457889999999753 3333 34455667888877654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=98.21  E-value=1.1e-05  Score=58.24  Aligned_cols=111  Identities=10%  Similarity=0.009  Sum_probs=71.3

Q ss_pred             CeEEEEeCChhhHHH----HHHHHHC--CCeEE-EEcCChHHHHHHHHc-C---CceecChhhhhc--CCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDM----AASLIRS--GYKVQ-AFEISDPLVDKFFML-G---GIRSASPMDAGK--DVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~i----a~~l~~~--g~~V~-~~d~~~~~~~~~~~~-g---~~~~~~~~~~~~--~~dvii~~v~~~   69 (173)
                      .||||||+|.+|..+    ...+.+.  ++++. ++|+++++.+.+.+. +   ....++.+++++  +.|+|++|+|+.
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence            489999999865444    4445543  46765 799999988776553 4   345678888875  578999999976


Q ss_pred             hhhhhhhcCccchhh--cCCCCCEEEEcC--CCCHHHHHHHHHHHhcC-Cce
Q 044797           70 DQIDDIFFGHEGVLK--GLQKGAVIILQS--TILPSHMQKLEKTFTGN-LTF  116 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~--~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~-g~~  116 (173)
                      .+.+.+..   -+..  ....++.++..=  +.+..+.+++.+..+++ ++.
T Consensus        97 ~h~~~~~~---al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~  145 (237)
T d2nvwa1          97 EHYEVVKN---ILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQ  145 (237)
T ss_dssp             HHHHHHHH---HHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCE
T ss_pred             chhhHHHH---HHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCee
Confidence            66555441   1111  123455555442  34566778888877665 343

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.21  E-value=3.3e-06  Score=57.07  Aligned_cols=65  Identities=15%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHH--------cC--Cc-eecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFM--------LG--GI-RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~--------~g--~~-~~~~~~~~~~~~dvii~~v~   67 (173)
                      +||+|||+|.+|+.+|..+...+ .++.++|+++++.+....        .+  .. ...+..+.++++|+|+++..
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag   80 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence            69999999999999998887777 489999999877543211        01  11 22344566789999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.20  E-value=1.3e-06  Score=58.54  Aligned_cols=64  Identities=16%  Similarity=0.048  Sum_probs=44.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHH-Hc-C-------CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFF-ML-G-------GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~-~~-g-------~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +||+|||+|++|+.++..+...+.  ++.++|+++++++... +. +       ........+.++++|+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            589999999999999999998885  8999999987643211 11 1       112223345678999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=2.2e-06  Score=59.51  Aligned_cols=73  Identities=10%  Similarity=-0.042  Sum_probs=53.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-----cChhhhh---------cCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-----ASPMDAG---------KDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~---------~~~dvii~~v~   67 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+++.|+..+     .+..+..         ..+|+||-|+.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG  109 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATG  109 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeecCC
Confidence            478999999999999999999997 79999999999998888876422     1211111         13678888876


Q ss_pred             Chhhhhhh
Q 044797           68 HVDQIDDI   75 (173)
Q Consensus        68 ~~~~~~~v   75 (173)
                      .+..++..
T Consensus       110 ~~~~~~~a  117 (182)
T d1vj0a2         110 DSRALLEG  117 (182)
T ss_dssp             CTTHHHHH
T ss_pred             chhHHHHH
Confidence            54444433

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=2.2e-06  Score=58.52  Aligned_cols=65  Identities=11%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHHc----CC--ceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFML----GG--IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~----g~--~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||+|||+|++|+.+|..|...|.  ++.++|+++++++.    +.+.    +.  ....+..+.++++|+|+++..
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence            589999999999999999998885  89999999887643    2221    11  122233455689999998864

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=1.3e-07  Score=65.53  Aligned_cols=107  Identities=16%  Similarity=0.063  Sum_probs=67.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~   78 (173)
                      +||+|||+|.||...++.+.+..  ..+.+++....+  ...........+.+++++  +.|+|++++|+..+.+.+.  
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~~--   83 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIR--   83 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHH--
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccccc--
Confidence            58999999999999988886533  224444322211  111111223446778765  5789999999766654433  


Q ss_pred             ccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceee
Q 044797           79 HEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                           ..++.|+.++-.  .+.+.+..+++.+..++.+..+.
T Consensus        84 -----~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~  120 (172)
T d1lc0a1          84 -----QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLH  120 (172)
T ss_dssp             -----HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             -----cccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEE
Confidence                 334556655543  24567888888888888877643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1e-05  Score=55.28  Aligned_cols=87  Identities=20%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee---cChh---hhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS---ASPM---DAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~---~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      .+|.|+|+|.+|...++.+...|.++++.++++++.+.+++.|....   .+..   ...+..|+++.++..+..++..+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~  111 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT  111 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHHH
Confidence            47899999999999999999999999999999999888888776422   1111   22346899999998655555444


Q ss_pred             cCccchhhcCCCCCEEEEcC
Q 044797           77 FGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~s   96 (173)
                             ..++++-.++..+
T Consensus       112 -------~~l~~~G~iv~~G  124 (168)
T d1uufa2         112 -------TLLKRDGTMTLVG  124 (168)
T ss_dssp             -------TTEEEEEEEEECC
T ss_pred             -------HHHhcCCEEEEec
Confidence                   3455666666654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.13  E-value=6.2e-06  Score=57.26  Aligned_cols=89  Identities=16%  Similarity=-0.000  Sum_probs=55.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC-CeEEEE-cCChHHHHH-HHH-----------------cCCceecChhhhhcCCCE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG-YKVQAF-EISDPLVDK-FFM-----------------LGGIRSASPMDAGKDVSA   61 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~-d~~~~~~~~-~~~-----------------~g~~~~~~~~~~~~~~dv   61 (173)
                      |-||||.|+|++|..+++.+.++. .++.++ |+++..... +..                 .+.....+..+..+++|+
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDi   80 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI   80 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCE
Confidence            458999999999999999998765 677654 555443222 111                 123334455666678999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      |+.|+|.....+       ....+++.|+-++-++.
T Consensus        81 ViecTG~f~~~e-------~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          81 VVDTTPNGVGAQ-------YKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             EEECCSTTHHHH-------HHHHHHHTTCEEEECTT
T ss_pred             EEECCCCcCCHH-------HHHHHHHcCCEEEEECC
Confidence            999998533222       12344555655554433

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=1.2e-05  Score=55.04  Aligned_cols=89  Identities=21%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-cC--hh----hhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-AS--PM----DAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~--~~----~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++.+.+++.|+..+ ++  ..    ...+..|+++.++......  .
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~--~  106 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI--D  106 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC--C
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc--h
Confidence            47899999999999999999999999999999999999888886422 11  11    2234579999987643321  1


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +   +.....++++-.++..+
T Consensus       107 ~---~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         107 F---NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             T---TTGGGGEEEEEEEEECC
T ss_pred             H---HHHHHHhhccceEEEec
Confidence            1   11234455555555554

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=6.3e-06  Score=54.16  Aligned_cols=85  Identities=15%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE   80 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~   80 (173)
                      |||++.|+ |+||+.+++.+.+.++++. .+|++                 ..+.+.++|++|=-.. |..+.+.+.   
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------------~~~~~~~~DVvIDFS~-p~~~~~~l~---   59 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------------GVEELDSPDVVIDFSS-PEALPKTVD---   59 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------------EEEECSCCSEEEECSC-GGGHHHHHH---
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------------cHHHhccCCEEEEecC-HHHHHHHHH---
Confidence            58999996 9999999999999999875 33433                 2233567899887765 555555551   


Q ss_pred             chhhcCCCCCEEEEcCCCC-HHHHHHHHHHHh
Q 044797           81 GVLKGLQKGAVIILQSTIL-PSHMQKLEKTFT  111 (173)
Q Consensus        81 ~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~  111 (173)
                         ..++.+..++..+|+. ++..+.+.+..+
T Consensus        60 ---~~~~~~~p~ViGTTG~~~~~~~~i~~~ak   88 (128)
T d1vm6a3          60 ---LCKKYRAGLVLGTTALKEEHLQMLRELSK   88 (128)
T ss_dssp             ---HHHHHTCEEEECCCSCCHHHHHHHHHHTT
T ss_pred             ---HHHhcCCCEEEEcCCCCHHHHHHHHHHHh
Confidence               2234556677777764 444555655543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.12  E-value=4.4e-06  Score=57.73  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=61.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-----hhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-----PMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-----~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+++.|+..+-+     ..+.+      ...|++|.|+..+.
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~  108 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSE  108 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTT
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHH
Confidence            478999999999999999999996 7999999999999888888643211     11211      13788888887555


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .+++.+       ..++++..++..+
T Consensus       109 ~~~~a~-------~~~~~~G~iv~~G  127 (174)
T d1jqba2         109 TLSQAV-------KMVKPGGIISNIN  127 (174)
T ss_dssp             HHHHHH-------HHEEEEEEEEECC
T ss_pred             HHHHHH-------HHHhcCCEEEEEe
Confidence            444443       3345555555544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=7.1e-07  Score=55.48  Aligned_cols=34  Identities=12%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      +||.|+|+|..|.+.|+.|.+.|++|++||.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            5899999999999999999999999999997643

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.09  E-value=2.9e-06  Score=58.54  Aligned_cols=111  Identities=6%  Similarity=-0.112  Sum_probs=71.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C-CceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G-GIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++|.|+|+|.++.+++..|.+.+.+|++++|+.++.+.+.+.    + +...........++|++|.|+|.... .... 
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~-~~~~-   96 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGTA-   96 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---------
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc-cccc-
Confidence            579999999999999999998888999999999998877653    1 22222222335689999999995432 1111 


Q ss_pred             CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                        .-....++++..++|..-..|..+ .+.+..+..|...+
T Consensus        97 --~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~~~v  134 (171)
T d1p77a1          97 --SVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGLTNV  134 (171)
T ss_dssp             --CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTCCCE
T ss_pred             --chhhhhhcccceeeeeeccCcccH-HHHHHHHHcCCCcc
Confidence              111223456788888865445433 23444556676544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.09  E-value=7.4e-06  Score=56.63  Aligned_cols=115  Identities=8%  Similarity=-0.122  Sum_probs=74.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CC-----ceecChhhhhcCCCEEEEeccChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GG-----IRSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~-----~~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      ++|.|+|+|..+.+++..|.+.| +|++++|++++.+.+.+.     ..     ....+.......+|++|.|+|....-
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~   97 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP   97 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence            57999999999999999998777 999999999998876542     11     12234455567899999999853211


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ..-. ...--...+.++.++.|..-.... + .+.+..+..|...++.-
T Consensus        98 ~~~~-~~~~~~~~~~~~~~v~D~~y~p~~-T-~l~~~a~~~G~~~i~Gl  143 (177)
T d1nvta1          98 NIDV-EPIVKAEKLREDMVVMDLIYNPLE-T-VLLKEAKKVNAKTINGL  143 (177)
T ss_dssp             CCSS-CCSSCSTTCCSSSEEEECCCSSSS-C-HHHHHHHTTTCEEECTH
T ss_pred             cccc-cchhhhhccCcccceeeecCCcHh-H-HHHHHHHHCCCcccCCH
Confidence            1000 000012345678888898653333 2 34455567788776543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.09  E-value=5.8e-06  Score=55.10  Aligned_cols=107  Identities=17%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||+    ++.|..++++|.++|++|+..+++.+.+     .|.....++.++-...|++++++| +..+.+++  
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~--   91 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV--   91 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH--
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeC-HHHHHHHH--
Confidence            57999995    5799999999999999999888764322     366778888888888999999999 67777777  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                       +++.+. ....+++..+...    +++.+.++++|+.++...+.
T Consensus        92 -~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig~~C~  130 (139)
T d2d59a1          92 -EQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVANRCM  130 (139)
T ss_dssp             -HHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEESCCH
T ss_pred             -HHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEcCCcC
Confidence             334332 2334455444443    35567777889988776543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=3.1e-06  Score=56.27  Aligned_cols=109  Identities=18%  Similarity=0.168  Sum_probs=79.7

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~   78 (173)
                      ++|+|||+    ++.|..+.++|.+.|+++..++.++... .+  .|.....+..+.-...|++++++| +..+.+++  
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~-~i--~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v--   87 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE-EL--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHL--   87 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS-EE--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH--
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc-ee--eceecccchhhccCCCceEEEecc-HHHHHHHH--
Confidence            57999996    7899999999999999999998875321 11  255667788887778999999999 66677776  


Q ss_pred             ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                       ++..+. ....+++..+...    +++.+.++++|++++...+.
T Consensus        88 -~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~~~C~  126 (136)
T d1iuka_          88 -PEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVADRCL  126 (136)
T ss_dssp             -HHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEESCCH
T ss_pred             -HHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEcCCcc
Confidence             333332 3345666555433    45778888899998876544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.09  E-value=1.5e-06  Score=57.36  Aligned_cols=108  Identities=17%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             CeEEEEeC----ChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            3 SKVGFVGL----DEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         3 ~~IgiiG~----G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ++|+|||+    +++|..+.++|.+.| .+|+..+++.+.+     .|.....++.|+-...|++++++| +..+.+++ 
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~-   81 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTL-   81 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHHH-
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecC-hHHhHHHH-
Confidence            68999996    899999999998776 6899888875432     377778888888888999999999 66677777 


Q ss_pred             CccchhhcCCCCCEEEEcC--CCCH---HHHHHHHHHHhcCCceeee
Q 044797           78 GHEGVLKGLQKGAVIILQS--TILP---SHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~s--t~~~---~~~~~l~~~l~~~g~~~v~  119 (173)
                        ++..+.-.+..+++..+  ....   ...+++.+..+++|++++.
T Consensus        82 --~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G  126 (129)
T d2csua1          82 --IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (129)
T ss_dssp             --HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             --HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence              33433322222333221  1111   1123455556667777653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=3.1e-06  Score=57.93  Aligned_cols=66  Identities=11%  Similarity=0.013  Sum_probs=48.8

Q ss_pred             CeEEEEeCChhhHHHHHHH-HH-C----CCeEEEEcCChHHHHHHHHc---------CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASL-IR-S----GYKVQAFEISDPLVDKFFML---------GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l-~~-~----g~~V~~~d~~~~~~~~~~~~---------g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      |||+|||.|..|.+.+-.. .. .    ..++..+|+++++.+...+.         .....++..+.++++|+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            5999999999998887543 22 1    35899999999987653321         12345677888999999999875


Q ss_pred             C
Q 044797           68 H   68 (173)
Q Consensus        68 ~   68 (173)
                      .
T Consensus        81 ~   81 (162)
T d1up7a1          81 P   81 (162)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.99  E-value=1.7e-05  Score=53.15  Aligned_cols=64  Identities=9%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChH--HHHH----HHH----c--CCce---ecChhhhhcCCCEEEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDP--LVDK----FFM----L--GGIR---SASPMDAGKDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~--~~~~----~~~----~--g~~~---~~~~~~~~~~~dvii~   64 (173)
                      |||+|||+ |++|+.+|..+...+  .++.++|++++  +.+.    +.+    .  ..+.   ..+..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            59999995 999999999999888  48999998864  2321    221    0  1111   2233467889999999


Q ss_pred             ec
Q 044797           65 VI   66 (173)
Q Consensus        65 ~v   66 (173)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.99  E-value=1.4e-05  Score=51.16  Aligned_cols=73  Identities=7%  Similarity=-0.098  Sum_probs=50.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHc-CCceec--ChhhhhcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFML-GGIRSA--SPMDAGKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~-g~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v   75 (173)
                      ++|.|||.|.+|..-++.|++.|.+|+++++.... ...+.+. +++...  -..+.+.++++++.++.++..-..+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i   89 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRV   89 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHHHH
Confidence            68999999999999999999999999999876433 2333333 333221  1234467889888888755433333

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=4.1e-05  Score=52.44  Aligned_cols=66  Identities=14%  Similarity=0.047  Sum_probs=47.4

Q ss_pred             CCeEEEEeCChhhHHHH-HHHHH-C----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797            2 ASKVGFVGLDEYSVDMA-ASLIR-S----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALV   63 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia-~~l~~-~----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii   63 (173)
                      ..||+|||.|..|.+.+ ..+.. .    +-++..+|.++++++....        .+    ...+.+..++++++|+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            35899999999988744 33332 1    2389999999998763211        12    235668889999999999


Q ss_pred             Eecc
Q 044797           64 VVIS   67 (173)
Q Consensus        64 ~~v~   67 (173)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9974

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.6e-05  Score=53.21  Aligned_cols=64  Identities=13%  Similarity=0.086  Sum_probs=43.4

Q ss_pred             CeEEEEe-CChhhHHHHHHHH-HCC--CeEEEEcCChHHHHHHHHc-CC--------ceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLI-RSG--YKVQAFEISDPLVDKFFML-GG--------IRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~-~~g--~~V~~~d~~~~~~~~~~~~-g~--------~~~~~~~~~~~~~dvii~~v   66 (173)
                      |||+||| .|++|+++|..|. +.+  .++..+|..+.......+. ++        ...++..+.++++|+|+++.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvita   77 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECC
Confidence            6999999 5999999998875 333  6899999875332222221 11        11233345688999999986

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.95  E-value=2e-05  Score=53.62  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI   47 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~   47 (173)
                      .+|.|+|+|.+|...++.+...|.+|++.|+++++.+.+++.|+.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS   73 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence            478999999999999999999999999999999999988888764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=1.7e-05  Score=53.87  Aligned_cols=46  Identities=20%  Similarity=0.130  Sum_probs=41.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR   48 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~   48 (173)
                      .+|.|.|+|.+|...++.+...|.+|++.++++++.+.+++.|+..
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~   74 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADL   74 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSE
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcce
Confidence            4789999999999999999999999999999999999888887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.90  E-value=7.9e-05  Score=51.19  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecCh-------hhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASP-------MDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++.+..++.|+..+-+.       ....     ..+|++|.|+..+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~  109 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA  109 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccc
Confidence            478999999999999999999997 68899999999998888886533221       1111     2478888888766


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ..+++.+
T Consensus       110 ~~~~~a~  116 (174)
T d1e3ia2         110 QTLKAAV  116 (174)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            5554443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.85  E-value=3e-05  Score=52.38  Aligned_cols=64  Identities=16%  Similarity=0.115  Sum_probs=43.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEE--cCChHHHHHHHH---c-------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAF--EISDPLVDKFFM---L-------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~--d~~~~~~~~~~~---~-------g~~~~~~~~~~~~~~dvi   62 (173)
                      +||+|+|+ |.+|+.++..|...+.       ....+  +++.++.+....   .       .....++..+.++++|+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            59999996 9999999999987652       12333  344444443221   1       123456677889999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      +++.
T Consensus        85 iita   88 (154)
T d1y7ta1          85 LLVG   88 (154)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9986

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=9.7e-06  Score=55.40  Aligned_cols=102  Identities=12%  Similarity=0.111  Sum_probs=64.8

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHC-CCeE-EEEcCChHHH-H----HH---HHcCCceecChhhhhcCCCEEEEeccChh
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRS-GYKV-QAFEISDPLV-D----KF---FMLGGIRSASPMDAGKDVSALVVVISHVD   70 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~-~----~~---~~~g~~~~~~~~~~~~~~dvii~~v~~~~   70 (173)
                      .+||++.|+ |+||+.+++.+.+. ++++ .+++|..... .    .+   ...++...++.++..+.+|++|=... |.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~   82 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PE   82 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HH
Confidence            369999996 99999999998775 5665 4666653221 0    00   11245667778888889999988776 55


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHH
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTF  110 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l  110 (173)
                      .+.+.+      ..+.+.+.-++..+|+. .+..+.+.+..
T Consensus        83 ~~~~~~------~~a~~~~~~~ViGTTG~~~~~~~~i~~~a  117 (162)
T d1diha1          83 GTLNHL------AFCRQHGKGMVIGTTGFDEAGKQAIRDAA  117 (162)
T ss_dssp             HHHHHH------HHHHHTTCEEEECCCCCCHHHHHHHHHHT
T ss_pred             HHHHHH------HHHHhccceeEEecCCCcHHHHHHHHHHc
Confidence            555554      12234566666666654 44445555544

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=2.7e-05  Score=52.17  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCC-C---eEEEEcCChHHHHH--HHHcCCcee-cChhhhhcCCCEEEEeccChhhhh
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSG-Y---KVQAFEISDPLVDK--FFMLGGIRS-ASPMDAGKDVSALVVVISHVDQID   73 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g-~---~V~~~d~~~~~~~~--~~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~   73 (173)
                      |+||||+|+ |.+|+-+.+.|+++. +   +++.+..+...-..  ......... ....+.++++|++|+|+|... ..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~   79 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TN   79 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HH
Confidence            469999976 999999999887653 2   45555444322111  111111221 222345689999999998543 33


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ...   +.+.+ ...+.++||.|+
T Consensus        80 ~~~---~~~~~-~g~~~~VID~Ss   99 (146)
T d1t4ba1          80 EIY---PKLRE-SGWQGYWIDAAS   99 (146)
T ss_dssp             HHH---HHHHH-TTCCCEEEECSS
T ss_pred             Hhh---HHHHh-cCCCeecccCCc
Confidence            333   12221 223357888875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=0.00022  Score=47.56  Aligned_cols=105  Identities=8%  Similarity=-0.053  Sum_probs=65.2

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHH----HHHHcCCcee----cChh---h-hhcCCCEEEEeccChhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVD----KFFMLGGIRS----ASPM---D-AGKDVSALVVVISHVDQ   71 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~----~~~~~g~~~~----~~~~---~-~~~~~dvii~~v~~~~~   71 (173)
                      +|-|+|+|.+|..+++.|.+.|++|++.+.++++..    .+...++.+.    .+++   + -++++|.++.+++++..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            588999999999999999999999999999987543    3333354432    1221   1 25689999999987654


Q ss_pred             hhhhhcCccchhhcCCCC-CEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           72 IDDIFFGHEGVLKGLQKG-AVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g-~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ...+..    ....+.+. .++.-..  .+..    .+.++..|+.++
T Consensus        85 n~~~~~----~~r~~~~~~~iia~~~--~~~~----~~~l~~~Gad~v  122 (153)
T d1id1a_          85 NAFVVL----SAKDMSSDVKTVLAVS--DSKN----LNKIKMVHPDII  122 (153)
T ss_dssp             HHHHHH----HHHHHTSSSCEEEECS--SGGG----HHHHHTTCCSEE
T ss_pred             HHHHHH----HHHHhCCCCceEEEEc--CHHH----HHHHHHCCCCEE
Confidence            333331    22233334 4555443  2333    334455676544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.81  E-value=4.7e-05  Score=52.30  Aligned_cols=91  Identities=12%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC-CeEEEE-cCChHH-HHHHHHcC------------------CceecChhhhhcCCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG-YKVQAF-EISDPL-VDKFFMLG------------------GIRSASPMDAGKDVS   60 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~-d~~~~~-~~~~~~~g------------------~~~~~~~~~~~~~~d   60 (173)
                      |.||||-|+|++|..+.+.+..++ .++... |+++.. ...+...+                  .....+..++.+++|
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            569999999999999999987766 566544 555432 22222222                  222223456667899


Q ss_pred             EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797           61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                      +|+.|++.-...+       ...++++.|.-++-+++..
T Consensus        81 vViEcTG~f~~~~-------~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          81 IVIDCTPEGIGAK-------NLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             EEEECCSTTHHHH-------HHHHHHHTTCEEEECTTSC
T ss_pred             EEEEccCCCCCHH-------HHHHHHHcCCCEEEECCCC
Confidence            9999998433222       1234555566666555433

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.80  E-value=9.3e-05  Score=50.64  Aligned_cols=66  Identities=9%  Similarity=-0.035  Sum_probs=44.6

Q ss_pred             CeEEEEeCChhhHH--HHHHHHHC----CCeEEEEcCChHH--HHHHH--------HcCC----ceecChhhhhcCCCEE
Q 044797            3 SKVGFVGLDEYSVD--MAASLIRS----GYKVQAFEISDPL--VDKFF--------MLGG----IRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~G~mG~~--ia~~l~~~----g~~V~~~d~~~~~--~~~~~--------~~g~----~~~~~~~~~~~~~dvi   62 (173)
                      +||.|||+|..|..  ++..+...    .-++..+|+++++  .+.+.        +.+.    ..+++..++++++|+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            69999999987754  44444432    1389999998754  33322        1222    2456778889999999


Q ss_pred             EEeccC
Q 044797           63 VVVISH   68 (173)
Q Consensus        63 i~~v~~   68 (173)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.79  E-value=3.1e-05  Score=53.17  Aligned_cols=86  Identities=15%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-----cChhhhhc-----CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-----ASPMDAGK-----DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+...|.. |.+.|+++++.+.+++.|+...     .+..+.++     ..|++|.|+..+..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~  109 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEI  109 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHH
Confidence            4789999999999999999988875 5678999999998888875321     12222221     36888888875554


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEc
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQ   95 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~   95 (173)
                      .+..+       ..++++-.++..
T Consensus       110 ~~~~~-------~~~~~~G~i~~~  126 (174)
T d1f8fa2         110 LKQGV-------DALGILGKIAVV  126 (174)
T ss_dssp             HHHHH-------HTEEEEEEEEEC
T ss_pred             HHHHH-------hcccCceEEEEE
Confidence            44433       334455555443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.78  E-value=4.9e-05  Score=50.61  Aligned_cols=64  Identities=13%  Similarity=0.076  Sum_probs=44.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCC--eEEEEcCCh--HHHH----HHHH---c--CCceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGY--KVQAFEISD--PLVD----KFFM---L--GGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~--~V~~~d~~~--~~~~----~~~~---~--g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +||+||| .|++|+.+|..+...+.  ++.++|++.  ++.+    .+.+   .  ..+......+.+++||+|+++.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvita   78 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA   78 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEec
Confidence            5899999 69999999999998885  799999753  3322    1211   1  1222223345578999999885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.78  E-value=0.00012  Score=50.19  Aligned_cols=74  Identities=14%  Similarity=0.179  Sum_probs=55.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecCh-------hhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASP-------MDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+...-++       .+..     ...|++|.++..+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~  108 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI  108 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCc
Confidence            478999999999999999999995 79999999999999999887643221       1121     2478888888765


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ....+.+
T Consensus       109 ~~~~~~~  115 (174)
T d1p0fa2         109 ETMMNAL  115 (174)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            5444443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=1.2e-05  Score=48.03  Aligned_cols=36  Identities=11%  Similarity=0.039  Sum_probs=32.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL   37 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~   37 (173)
                      |++|||+|.|+.|..++..-.+.|+++.++|++++.
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            578999999999999999999999999999987543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.73  E-value=0.00027  Score=48.46  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecCh-------hhh-----hcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASP-------MDA-----GKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~-----~~~~dvii~~v~~~   69 (173)
                      ..|.|+|+|.+|...++.+...|. +|++.|+++++++...+.|+..+-+.       .+.     -...|+++.++..+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~  110 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL  110 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCch
Confidence            368999999999999999999994 79999999999999988887532111       111     13589999998765


Q ss_pred             hhhhhh
Q 044797           70 DQIDDI   75 (173)
Q Consensus        70 ~~~~~v   75 (173)
                      ....+.
T Consensus       111 ~~~~~a  116 (176)
T d1d1ta2         111 ETMIDA  116 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00014  Score=49.74  Aligned_cols=74  Identities=15%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|.|||-+. +|.+++..|.+.|..|+.++.+..              +..+..+++|++++++..+..++        
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~--------------~l~~~~~~aDivi~a~G~~~~i~--------   97 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------HLDEEVNKGDILVVATGQPEMVK--------   97 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------SHHHHHTTCSEEEECCCCTTCBC--------
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccc--------------cHHHHHhhccchhhccccccccc--------
Confidence            5789999876 999999999999999999986532              34556778999999998654322        


Q ss_pred             hhhcCCCCCEEEEcCCCC
Q 044797           82 VLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~   99 (173)
                       ...+++|.+++|.+...
T Consensus        98 -~~~vk~g~iviDvgi~~  114 (170)
T d1a4ia1          98 -GEWIKPGAIVIDCGINY  114 (170)
T ss_dssp             -GGGSCTTCEEEECCCBC
T ss_pred             -cccccCCCeEeccCccc
Confidence             24678999999997643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=7.7e-05  Score=50.81  Aligned_cols=120  Identities=12%  Similarity=0.021  Sum_probs=79.1

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG   81 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~   81 (173)
                      ++|.|||-+. +|.+++..|.+.|..|++++...              .+..+..+++|++|.++..+..+.        
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~i~--------   95 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIP--------   95 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBC--------
T ss_pred             ceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCccccc--------
Confidence            5799999887 99999999999999999997543              245566788999999998554322        


Q ss_pred             hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhhCCceeecCCCchHhHhHHh
Q 044797           82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLK  161 (173)
Q Consensus        82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~  161 (173)
                       ...+++|.++||.+....+           .+-         +.|+.+ ++.+++..+    ..---+-|=||-.+.+.
T Consensus        96 -~~~vk~g~vvIDvGi~~~~-----------~~~---------~~Gdvd-~~~v~~~a~----~~TPvPGGVGP~Tva~L  149 (166)
T d1b0aa1          96 -GDWIKEGAIVIDVGINRLE-----------NGK---------VVGDVV-FEDAAKRAS----YITPVPGGVGPMTVATL  149 (166)
T ss_dssp             -TTTSCTTCEEEECCCEECT-----------TSC---------EECSBC-HHHHHHHCS----EECCSSSSSHHHHHHHH
T ss_pred             -ccccCCCcEEEecCceecC-----------CCC---------EEeccc-cHhHHhhee----EeCCCCCcccHHHHHHH
Confidence             2467899999999754211           011         134322 233333311    11123447888888887


Q ss_pred             HhhhHhhhh
Q 044797          162 INYFIRVMT  170 (173)
Q Consensus       162 ~~~~~~~~~  170 (173)
                      +.+.+++.-
T Consensus       150 ~~N~v~a~~  158 (166)
T d1b0aa1         150 IENTLQACV  158 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=2.7e-05  Score=49.75  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL   37 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~   37 (173)
                      +||||+|.|+.|..++....+.|+++.++|++++.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            58999999999999999999999999999998764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.62  E-value=0.00022  Score=51.57  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=67.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEE-cCC----------hHHHHH------------HHHc-CCceecChhhhh-c
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF-EIS----------DPLVDK------------FFML-GGIRSASPMDAG-K   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~-d~~----------~~~~~~------------~~~~-g~~~~~~~~~~~-~   57 (173)
                      ++|.|-|+|++|+..|+.|.+.|.+|+.+ |.+          .+.+.+            +... +.....+.++++ .
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  111 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL  111 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhccc
Confidence            58999999999999999999999988644 432          222221            1111 333344445544 4


Q ss_pred             CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      +||+++-|-..+....+.       .+.++ -++|+...+ .|.+ .+..+.|.++|+.|+.+.
T Consensus       112 ~~DIliPcA~~~~I~~~~-------a~~i~-ak~IvegAN-~p~t-~~a~~~L~~rgI~~~PD~  165 (242)
T d1v9la1         112 DVDIFVPAAIENVIRGDN-------AGLVK-ARLVVEGAN-GPTT-PEAERILYERGVVVVPDI  165 (242)
T ss_dssp             CCSEEEECSCSSCBCTTT-------TTTCC-CSEEECCSS-SCBC-HHHHHHHHTTTCEEECHH
T ss_pred             cccEEeecchhccccHHH-------HHhcc-cCEEEecCC-CCCC-hhHHHHHHhCCeEEeCch
Confidence            799999987643322222       23332 355555544 3433 344678889999998764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.61  E-value=0.00036  Score=45.16  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee----cChhhh----hcCCCEEEEeccChhhh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS----ASPMDA----GKDVSALVVVISHVDQI   72 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~   72 (173)
                      .|-|+|.|.+|..+++.|.  +++|.+.+.++++.+.+...|....    ++.+.+    +++++.++++++++...
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n   76 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET   76 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh
Confidence            5778999999999999984  5678889999999988888775432    122211    56799999999865543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.60  E-value=9.3e-05  Score=50.50  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=60.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-c---Ch-hhhh-----cCCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-A---SP-MDAG-----KDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~---~~-~~~~-----~~~dvii~~v~~~~~   71 (173)
                      .+|.|+|+|.+|...++.+...|. .|++.++++++.+.+++.|...+ +   +. ++..     ...|++|.++..+..
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~  113 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQAT  113 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchH
Confidence            368899999999999999988774 77889999999998888875422 1   11 1111     247888888876555


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ++..+       ..++++-.++..+
T Consensus       114 ~~~a~-------~~l~~~G~iv~~G  131 (172)
T d1h2ba2         114 VDYTP-------YLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHGG-------GGEEEEEEEEECC
T ss_pred             HHHHH-------HHHhCCCEEEEEe
Confidence            55444       3445555555543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.58  E-value=6.7e-05  Score=51.04  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCceec-----Chhhh-h-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGIRSA-----SPMDA-G-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~-~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+ |.+|...++.+...| .+|+++++++++.+.+.+.|+..+-     +..+. .     ...|+++-|+..+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~  108 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSE  108 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccc
Confidence            47899995 999999999998888 5899999999999988888763221     11111 1     2478899888765


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ..++..+       ..++++..++..+
T Consensus       109 ~~~~~a~-------~~l~~~G~iv~~G  128 (170)
T d1jvba2         109 KTLSVYP-------KALAKQGKYVMVG  128 (170)
T ss_dssp             HHHTTGG-------GGEEEEEEEEECC
T ss_pred             hHHHhhh-------hhcccCCEEEEec
Confidence            5554443       4456666666554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.58  E-value=7.9e-05  Score=51.83  Aligned_cols=65  Identities=15%  Similarity=-0.044  Sum_probs=48.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CC--ce-----ecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GG--IR-----SASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~--~~-----~~~~~~~~~~~dvii~~v~   67 (173)
                      +++-|.| .|.+|..+++.|++.|.+|++.+|++++.+.+.+.     ..  ..     ..+.++++.+.|++|.+..
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecCc
Confidence            4566666 79999999999999999999999999988765442     11  11     1234456778898887754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.57  E-value=0.00016  Score=48.67  Aligned_cols=65  Identities=17%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChH--HHHHHH----Hc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDP--LVDKFF----ML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~--~~~~~~----~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      +||+|||+ |++|++++..|++.+.       ++..+|.+..  +.+.+.    ..      ......+..+.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            69999995 9999999999876442       5678887653  333321    11      123456677889999999


Q ss_pred             EEecc
Q 044797           63 VVVIS   67 (173)
Q Consensus        63 i~~v~   67 (173)
                      +++..
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99863

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.50  E-value=0.00042  Score=51.25  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=67.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEE-c----------CChHHHHHHHHcCCce------ecChhhhh-cCCCEEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF-E----------ISDPLVDKFFMLGGIR------SASPMDAG-KDVSALVV   64 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~-d----------~~~~~~~~~~~~g~~~------~~~~~~~~-~~~dvii~   64 (173)
                      ++|.|-|.|++|+..|+.|.+.|.+|+.+ |          .+.+.+..........      .-+..+.+ .+||+++-
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliP  116 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIP  116 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEee
Confidence            47999999999999999999999987644 3          3445555544431111      11223333 48999998


Q ss_pred             eccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        65 ~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      |........+.       .+.++ -++|+...+ .|.+ .+..+.|.++|+.|+.+.
T Consensus       117 aA~~~~I~~~~-------a~~l~-ak~I~EgAN-~P~t-~eA~~~L~~~gI~viPD~  163 (293)
T d1hwxa1         117 AASEKQLTKSN-------APRVK-AKIIAEGAN-GPTT-PQADKIFLERNIMVIPDL  163 (293)
T ss_dssp             CSSSSCBCTTT-------GGGCC-CSEEECCSS-SCBC-HHHHHHHHHTTCEEECHH
T ss_pred             ccccccccHHH-------HHHHh-hCEEeccCC-CCCC-cchHHHHHHCCCEEeChh
Confidence            86643322222       22332 245554443 4533 345678889999998754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=2.2e-05  Score=52.55  Aligned_cols=89  Identities=9%  Similarity=-0.021  Sum_probs=52.8

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC---eEEEEcCChHHHHHHHHcC--CceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY---KVQAFEISDPLVDKFFMLG--GIRSASPMDAGKDVSALVVVISHVDQIDDIF   76 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~   76 (173)
                      ++|||+|+ |..|.-+.+.|.+++|   ++.....+...-+.+...+  ........+...++|++|+|+|... .....
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence            69999976 9999999999986664   4544322211111111101  1112222344678999999998543 33332


Q ss_pred             cCccchhhcCCCCCEEEEcCCC
Q 044797           77 FGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        77 ~~~~~i~~~l~~g~~ii~~st~   98 (173)
                            ......|..+||.|+-
T Consensus        82 ------~~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          82 ------ERARAAGCSVIDLSGA   97 (144)
T ss_dssp             ------HHHHHTTCEEEETTCT
T ss_pred             ------cccccCCceEEeechh
Confidence                  1234678899998864

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.47  E-value=0.00031  Score=50.95  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      +||++|  |.+.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   43 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS   43 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            588877  56679999999999999999999999998876543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.44  E-value=7.7e-05  Score=53.14  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||.|||.|-.|.+.|..|.++|++|+++||++
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999863

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.43  E-value=5.9e-05  Score=55.23  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=34.3

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL   37 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~   37 (173)
                      |..+|.|||+|..|..+|..|.++|++|.+++++++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7779999999999999999999999999999998753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.43  E-value=0.00045  Score=46.86  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecCh-------hhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASP-------MDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.+...|. .|++.++++++.+..++.|+...-+.       .+..     ..+|++|.++..+
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~  109 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV  109 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCH
Confidence            368899999999999999999995 67888999999988888886533211       1111     3478888888755


Q ss_pred             hhhhhh
Q 044797           70 DQIDDI   75 (173)
Q Consensus        70 ~~~~~v   75 (173)
                      ...+..
T Consensus       110 ~~~~~~  115 (176)
T d2fzwa2         110 KVMRAA  115 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.42  E-value=0.00023  Score=46.74  Aligned_cols=90  Identities=19%  Similarity=0.280  Sum_probs=64.4

Q ss_pred             CeEEEEeC----------ChhhHHHHHHHHHCCCeEEEEcCChHHH-------HHHH----HcCCceecChhhhhcCCCE
Q 044797            3 SKVGFVGL----------DEYSVDMAASLIRSGYKVQAFEISDPLV-------DKFF----MLGGIRSASPMDAGKDVSA   61 (173)
Q Consensus         3 ~~IgiiG~----------G~mG~~ia~~l~~~g~~V~~~d~~~~~~-------~~~~----~~g~~~~~~~~~~~~~~dv   61 (173)
                      .||+|+|+          ..-...+++.|.+.|.+|.+||+.-+..       +.+.    .......+++.++++++|+
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~   93 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDV   93 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSE
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceE
Confidence            57888886          4567788999999999999999743321       1111    1134567789999999999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP  100 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~  100 (173)
                      |+++++++. .+++.       ..+.+++.|+|.....+
T Consensus        94 ivi~t~h~~-f~~l~-------~~~~~~~~I~D~~~~~~  124 (136)
T d1mv8a3          94 LVLGNGDEL-FVDLV-------NKTPSGKKLVDLVGFMP  124 (136)
T ss_dssp             EEECSCCGG-GHHHH-------HSCCTTCEEEESSSCCS
T ss_pred             EEEEeCCHH-HHHHH-------HHhcCCCEEEECCCCCC
Confidence            999999754 44443       34667889999876543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.41  E-value=0.00053  Score=47.00  Aligned_cols=64  Identities=9%  Similarity=0.038  Sum_probs=45.6

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChH--HHHHHH----Hc------CCceecChhhhhcCCCEE
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDP--LVDKFF----ML------GGIRSASPMDAGKDVSAL   62 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~--~~~~~~----~~------g~~~~~~~~~~~~~~dvi   62 (173)
                      .||.|+|+ |++|++++..|++...       ++..+|.+..  .++.+.    +.      .....++..+.++++|+|
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvV  104 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA  104 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceE
Confidence            37999996 9999999999987432       5677777653  233221    11      224567788999999999


Q ss_pred             EEec
Q 044797           63 VVVI   66 (173)
Q Consensus        63 i~~v   66 (173)
                      |++.
T Consensus       105 vi~a  108 (175)
T d7mdha1         105 LLIG  108 (175)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            9986

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.40  E-value=0.00012  Score=51.39  Aligned_cols=64  Identities=17%  Similarity=0.015  Sum_probs=46.5

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeE--EEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKV--QAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V--~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v   66 (173)
                      |++|.|.| .|.+|+.+++.|++.|+++  +...|++++.+.+.. +++       ...+..++++++|.|+.+.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a   76 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILT   76 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEE
Confidence            57899997 7999999999999999765  445688877665432 222       1223456678899998775

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.36  E-value=0.00097  Score=45.26  Aligned_cols=74  Identities=16%  Similarity=0.221  Sum_probs=54.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcCCceecCh-------hhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLGGIRSASP-------MDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...++.++..| ..|++.++++++.+...+.|....-+.       .+..     ...|++|.++..+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~  109 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL  109 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCch
Confidence            36899999999999999999998 588999999999998888876532211       1111     2578888888765


Q ss_pred             hhhhhhh
Q 044797           70 DQIDDIF   76 (173)
Q Consensus        70 ~~~~~v~   76 (173)
                      ...+..+
T Consensus       110 ~~~~~a~  116 (176)
T d2jhfa2         110 DTMVTAL  116 (176)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            5444443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.36  E-value=0.00062  Score=49.27  Aligned_cols=40  Identities=15%  Similarity=0.213  Sum_probs=35.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      ||++|  |.+.+|.++|+.|++.|++|.+.+|+++++++..+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   44 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK   44 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            78888  67789999999999999999999999988876544

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=0.00025  Score=48.78  Aligned_cols=90  Identities=17%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHC-CCeEE-EEcCC-----hHHHHHHHHc--C-----CceecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRS-GYKVQ-AFEIS-----DPLVDKFFML--G-----GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~-g~~V~-~~d~~-----~~~~~~~~~~--g-----~~~~~~~~~~~~~~dvii~~v   66 (173)
                      |+||+|+| .|..|.-+.+.|.++ .+++. ++-++     ..+.......  +     .....+......++|++|+|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al   80 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT   80 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence            67999997 899999999999997 45664 33221     1122221111  1     112233444567899999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      |+.. ..+..      ......+..++|.|+-
T Consensus        81 p~~~-s~~~~------~~~~~~~~~vIDlSad  105 (179)
T d2g17a1          81 AHEV-SHDLA------PQFLQAGCVVFDLSGA  105 (179)
T ss_dssp             CHHH-HHHHH------HHHHHTTCEEEECSST
T ss_pred             cchh-HHHHh------hhhhhcCceeeccccc
Confidence            9543 33332      1234578899999864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.0018  Score=42.33  Aligned_cols=96  Identities=13%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             eEEEEe-CChhhHHHHHHHHH-CCCeEE-EEcCChHHHHHHHHcCCceecChhhh-hcCCCEEEEeccChhhhhhhhcCc
Q 044797            4 KVGFVG-LDEYSVDMAASLIR-SGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDA-GKDVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~-~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      ||+|+| .|+||+.+++.+.+ .++++. .+|+...               .... ..++|+||=... |..+.+.+   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~---------------~~~~~~~~~DvvIDFS~-p~~~~~~~---   61 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP---------------LSLLTDGNTEVVIDFTH-PDVVMGNL---   61 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC---------------THHHHTTTCSEEEECCC-TTTHHHHH---
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---------------hhhhccccCCEEEEccc-HHHHHHHH---
Confidence            799999 59999999998765 456764 5665321               1111 246899887765 45555554   


Q ss_pred             cchhhcCCCCCEEEEcCCCC-HHHHHHHHHHH-hcCCceeeece
Q 044797           80 EGVLKGLQKGAVIILQSTIL-PSHMQKLEKTF-TGNLTFYILER  121 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l-~~~g~~~v~~~  121 (173)
                         ...++.+..++..+|+. ++..+.+.+.+ ....+..+-.+
T Consensus        62 ---~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap  102 (135)
T d1yl7a1          62 ---EFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP  102 (135)
T ss_dssp             ---HHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ---HHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence               12334566676666654 55567777753 33455544444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00076  Score=48.58  Aligned_cols=40  Identities=8%  Similarity=0.028  Sum_probs=34.1

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|..+|+.|+++|.+|.+++|++++++.+.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~   49 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA   49 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  55669999999999999999999999998877654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.27  E-value=0.00055  Score=49.45  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=35.5

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+++|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~   52 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD   52 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            478888  66789999999999999999999999988876544

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00027  Score=48.18  Aligned_cols=85  Identities=13%  Similarity=0.109  Sum_probs=61.1

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhh------hcCCCEEEEeccChhhhhhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA------GKDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~------~~~~dvii~~v~~~~~~~~v   75 (173)
                      .+|.|.| .|.+|....+.+...|.+|++.++++++.+.+.+.|+...-+..+.      -+.+|+|+-++.+  .+++.
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~--~~~~~  106 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK--EVEES  106 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT--THHHH
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch--hHHHH
Confidence            4688888 5999999999999999999999999999998888887543333222      2458999887752  34433


Q ss_pred             hcCccchhhcCCCCCEEEEcC
Q 044797           76 FFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      +       ..++++-.++..+
T Consensus       107 ~-------~~l~~~G~~v~~G  120 (171)
T d1iz0a2         107 L-------GLLAHGGRLVYIG  120 (171)
T ss_dssp             H-------TTEEEEEEEEEC-
T ss_pred             H-------HHHhcCCcEEEEe
Confidence            3       4556666666654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.23  E-value=0.00017  Score=51.72  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      .+||.|||.|.-|...|..|.++|++|++++++++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            36999999999999999999999999999998653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0005  Score=46.75  Aligned_cols=87  Identities=11%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec-----Chhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|.|+ |.+|....+.+...|.+|++.++++++.+.+++.|+...-     +..+.+      +..|+++-++. +.
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-~~  108 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-NV  108 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-HH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-HH
Confidence            46899985 9999999999999999999999999998888888864321     122221      23677887776 33


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      .++..+       ..++++..++..+.
T Consensus       109 ~~~~~~-------~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         109 NLSKDL-------SLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHHH-------HHEEEEEEEEECCC
T ss_pred             HHHHHH-------hccCCCCEEEEEec
Confidence            333332       44566666666543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.18  E-value=0.003  Score=42.55  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecCh-------hhhh-----cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASP-------MDAG-----KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~-----~~~dvii~~v~~~   69 (173)
                      .+|.|+|+|.+|...+..++..|. +|++.|+++++.+...+.|+..+-+.       .+..     ...|+++.++..+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~  109 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNV  109 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecCCH
Confidence            468999999999999999988875 68999999999999999886533221       1111     2478888887654


Q ss_pred             hhhhh
Q 044797           70 DQIDD   74 (173)
Q Consensus        70 ~~~~~   74 (173)
                      .....
T Consensus       110 ~~~~~  114 (175)
T d1cdoa2         110 GVMRN  114 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.17  E-value=0.00016  Score=52.05  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |+|.|||.|.-|...|..|.++|++|+++++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            589999999999999999999999999999863

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.00021  Score=49.03  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=31.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~   36 (173)
                      +||.|||.|..|...|..|.++|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            689999999999999999999998 5999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0002  Score=49.41  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||+|||.|..|...|..|.++||+|++|++++
T Consensus        44 k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             cEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            689999999999999999999999999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.15  E-value=0.0012  Score=47.76  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=33.6

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~   48 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE   48 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44455  57889999999999999999999999988776544

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.14  E-value=0.00053  Score=49.82  Aligned_cols=113  Identities=11%  Similarity=0.068  Sum_probs=64.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCC----------hHHHHHH-HH---------------cCCceecChhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEIS----------DPLVDKF-FM---------------LGGIRSASPMDA   55 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~-~~---------------~g~~~~~~~~~~   55 (173)
                      ++|.|-|.|++|+..++.|.+.|.+|+ +.|.+          .+.+.+. .+               .+.+..+..+-+
T Consensus        37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (255)
T d1bgva1          37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPW  116 (255)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcc
Confidence            589999999999999999999999875 43421          2222111 11               122222222223


Q ss_pred             hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      -.+||+++-|-.......+..   +.+.   .++..+|......|.+.+.....++++|+.|+.+.
T Consensus       117 ~~~~DiliPcA~~~~I~~~~a---~~l~---a~~ck~I~EgAN~p~t~ea~~~ll~~~gI~vvPD~  176 (255)
T d1bgva1         117 GQKVDIIMPCATQNDVDLEQA---KKIV---ANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSK  176 (255)
T ss_dssp             GSCCSEEECCSCTTCBCHHHH---HHHH---HTTCCEEECCSSSCBCHHHHHHHHHCTTCEEECHH
T ss_pred             cccccEEeeccccccccHHHH---Hhhh---hcCceEEecCCCCCcchHHHHHHHHhcCCEEehHh
Confidence            457999987765332222222   1121   12333444444456555555556777899887653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.14  E-value=0.00083  Score=46.70  Aligned_cols=65  Identities=17%  Similarity=0.007  Sum_probs=49.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecCh-----h----hhh--cCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASP-----M----DAG--KDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~-----~----~~~--~~~dvii~~v~   67 (173)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.+.+.|+....+.     .    +..  ..+|++|-++.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            478999999999998888888786 78899999999999988886543321     1    111  24788888875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0016  Score=47.05  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|++++|++++++++.+
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~   52 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA   52 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            67777  78899999999999999999999999998877544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.08  E-value=0.0022  Score=46.38  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++++.|++.|++|.+.+|++++++...+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   46 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   46 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            66677  66789999999999999999999999988776543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.08  E-value=0.0014  Score=47.53  Aligned_cols=41  Identities=12%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+++|  |.+.+|.++|+.|++.|++|.+.+|+++++++..+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   50 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT   50 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            366677  66789999999999999999999999998876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0011  Score=47.86  Aligned_cols=41  Identities=17%  Similarity=0.132  Sum_probs=36.0

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.||++++++.+.++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   49 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE   49 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            56666  678999999999999999999999999998887664

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.0018  Score=46.41  Aligned_cols=41  Identities=10%  Similarity=0.093  Sum_probs=35.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++...+.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~   48 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA   48 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            66666  567799999999999999999999999988876653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.0036  Score=44.71  Aligned_cols=108  Identities=14%  Similarity=0.108  Sum_probs=65.3

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEE-cC----------ChHHHHHHHHc-C-------CceecChhhhhc-CCCE
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAF-EI----------SDPLVDKFFML-G-------GIRSASPMDAGK-DVSA   61 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~-d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~~-~~dv   61 (173)
                      ++|.|-|+|++|+..++.|. +.|..|+.. |.          +.+.+..+.+. +       .+.. +.++... +||+
T Consensus        32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DI  110 (234)
T d1b26a1          32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI  110 (234)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccccccce
Confidence            58999999999999999996 568887644 32          33344333332 1       1222 3445544 8999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ++-|-.......+..       +.++ -++|+...+ .|.+ .+..+.|.++|+.|+.+.
T Consensus       111 ~~PcA~~~~I~~~~a-------~~l~-~~~I~e~AN-~p~t-~~a~~~L~~rgI~~~PD~  160 (234)
T d1b26a1         111 LVPAALEGAIHAGNA-------ERIK-AKAVVEGAN-GPTT-PEADEILSRRGILVVPDI  160 (234)
T ss_dssp             EEECSCTTCBCHHHH-------TTCC-CSEEECCSS-SCBC-HHHHHHHHHTTCEEECHH
T ss_pred             eecchhcccccHHHH-------HHhh-hceEeecCC-CCCC-HHHHHHHHHCCeEEechH
Confidence            998865433222222       3333 245555444 3433 345677888999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0013  Score=47.51  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   53 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD   53 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            78888  77889999999999999999999999988876543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.04  E-value=0.0014  Score=47.38  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.||++++++++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  56779999999999999999999999988876544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0019  Score=46.25  Aligned_cols=41  Identities=20%  Similarity=0.151  Sum_probs=35.9

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            367777  67889999999999999999999999998877654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.02  E-value=0.00084  Score=48.83  Aligned_cols=67  Identities=21%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChH-----HHH---HHHHcCCcee-------cChhhhhcCCCEEEEe
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDP-----LVD---KFFMLGGIRS-------ASPMDAGKDVSALVVV   65 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~-----~~~---~~~~~g~~~~-------~~~~~~~~~~dvii~~   65 (173)
                      .+||.|.| .|.+|..+++.|+++|++|++..|++.     +.+   .+...+++..       .+..+.+++++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            36899997 599999999999999999999988643     222   2233344322       2234567788999888


Q ss_pred             ccC
Q 044797           66 ISH   68 (173)
Q Consensus        66 v~~   68 (173)
                      .+.
T Consensus        83 ~~~   85 (312)
T d1qyda_          83 LAG   85 (312)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            763

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.0025  Score=45.67  Aligned_cols=108  Identities=11%  Similarity=0.050  Sum_probs=64.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CCCeEE-EEcCC----------hHHHHHHHHc--------CCceecChhhh-hcCCCE
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SGYKVQ-AFEIS----------DPLVDKFFML--------GGIRSASPMDA-GKDVSA   61 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g~~V~-~~d~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~~dv   61 (173)
                      ++|.|-|+|++|+.+++.|.+ .|..|+ +.|.+          .+.+.+....        +.... +.++. -.+||+
T Consensus        33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~DI  111 (239)
T d1gtma1          33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDV  111 (239)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccccccE
Confidence            589999999999999999975 587764 44543          2333222221        22333 34444 358999


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ++-|.......++.+       +.++ -++|+...+ .|.+. +..+.|.++|+.|+.+.
T Consensus       112 l~PcA~~~~I~~~~a-------~~i~-ak~I~e~AN-~p~t~-ea~~~L~~rgI~~iPD~  161 (239)
T d1gtma1         112 LAPAAIEEVITKKNA-------DNIK-AKIVAEVAN-GPVTP-EADEILFEKGILQIPDF  161 (239)
T ss_dssp             EEECSCSCCBCTTGG-------GGCC-CSEEECCSS-SCBCH-HHHHHHHHTTCEEECHH
T ss_pred             EeeccccccccHHHH-------Hhcc-ccEEEecCC-CCCCH-HHHHHHHHCCCEEecch
Confidence            998876433222222       2332 245555444 34333 44677889999998754

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.00086  Score=44.62  Aligned_cols=91  Identities=12%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCC-C---eEEEEcCC--hHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhh
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSG-Y---KVQAFEIS--DPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDD   74 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g-~---~V~~~d~~--~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   74 (173)
                      |||||| +.|..|.-+.+.|.++. |   ++..+..+  ..+...+... .........+.++++|++|+|+|+.. ..+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence            599999 57999999999887643 3   44433222  1111001000 01111222345689999999999543 344


Q ss_pred             hhcCccchhhcCCCCCEEEEcCCC
Q 044797           75 IFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      +.   +.+.+ ......+||.|+-
T Consensus        80 ~~---~~l~~-~g~~~~VIDlSsd   99 (147)
T d1mb4a1          80 VY---PALRQ-AGWKGYWIDAAST   99 (147)
T ss_dssp             HH---HHHHH-TTCCSEEEESSST
T ss_pred             Hh---HHHHH-cCCceEEEeCCcc
Confidence            43   12221 1223468888763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.98  E-value=0.00061  Score=43.27  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      +++.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            6899999999999999999999999999987653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.95  E-value=0.00041  Score=49.81  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||.|||.|.-|...|..|.++|++|+++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            799999999999999999999999999999764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00071  Score=43.42  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ..++.|||.|.+|.-+|..|.+.|.+|+++++++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            3689999999999999999999999999998865

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.0012  Score=45.12  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=54.3

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCC-CeEE-EEcC-Ch-HHHHHHHHc--C-C-ceecChhhhhcCCCEEEEeccChhhh
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSG-YKVQ-AFEI-SD-PLVDKFFML--G-G-IRSASPMDAGKDVSALVVVISHVDQI   72 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g-~~V~-~~d~-~~-~~~~~~~~~--g-~-~~~~~~~~~~~~~dvii~~v~~~~~~   72 (173)
                      |+||+|+| .|..|.-+.+.|.++- +++. ++.+ +. .++......  + . ....+.++..+++|++++|+|.....
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~   80 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY   80 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH
Confidence            57999995 7999999999998865 3543 3322 22 122222111  1 1 11234556667899999999975543


Q ss_pred             hhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           73 DDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        73 ~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                       +..       +.. .+..|||.|+-
T Consensus        81 -~~~-------~~~-~~~~VIDlSad   97 (176)
T d1vkna1          81 -DLV-------REL-KGVKIIDLGAD   97 (176)
T ss_dssp             -HHH-------TTC-CSCEEEESSST
T ss_pred             -HHH-------Hhh-ccceEEecCcc
Confidence             332       122 57889999873

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0011  Score=45.06  Aligned_cols=86  Identities=14%  Similarity=0.031  Sum_probs=60.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee---c--Chhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS---A--SPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~--~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|.| +|.+|...++.+...|.+|.+..+++++.+.+++.|+...   .  +..+.+      ++.|+++-++.. .
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~-~  105 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG-E  105 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-H
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc-h
Confidence            3677777 5999999999999999999999999999888888775422   1  222222      347888888873 4


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .++..+       ..++++..++..+
T Consensus       106 ~~~~~~-------~~l~~~G~~v~~G  124 (183)
T d1pqwa_         106 AIQRGV-------QILAPGGRFIELG  124 (183)
T ss_dssp             HHHHHH-------HTEEEEEEEEECS
T ss_pred             HHHHHH-------HHhcCCCEEEEEc
Confidence            444443       3456666777664

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0019  Score=46.44  Aligned_cols=41  Identities=22%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++.+.++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   49 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE   49 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            66777  567899999999999999999999999988776553

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.89  E-value=0.00025  Score=47.62  Aligned_cols=88  Identities=11%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCCe---EEEEcCChHHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGYK---VQAFEISDPLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF   77 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~   77 (173)
                      ||+|+|+ |..|.-+.+.|.++.++   +.....+...-+.+...  ........++...+.|+++++.|.... .+.. 
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s-~~~~-   80 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS-AKYA-   80 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH-HHHH-
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccch-hhHH-
Confidence            7999986 99999999999888653   33332221110111000  111223334556789999999984333 3332 


Q ss_pred             CccchhhcCCCCCEEEEcCCC
Q 044797           78 GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        78 ~~~~i~~~l~~g~~ii~~st~   98 (173)
                           .+...++..|||.|+-
T Consensus        81 -----~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          81 -----PYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             -----HHHHHTTCEEEECSST
T ss_pred             -----hhhccccceehhcChh
Confidence                 2334678999999863

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=9.5e-05  Score=50.66  Aligned_cols=87  Identities=15%  Similarity=0.064  Sum_probs=57.7

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc------------eecChhhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI------------RSASPMDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~dvii~~v~~~   69 (173)
                      +++.|||-++ +|.+++..|.+.|..|+.++.+...... ......            ..+.+.+....+|++|++++.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p  108 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE  108 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhccccCCEEEEccCCC
Confidence            5799999776 5999999999999999998865321000 000000            0112455566899999999865


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      .-   .+     -.+++++|++++|.+..
T Consensus       109 ~~---~i-----~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         109 NY---KF-----PTEYIKEGAVCINFACT  129 (171)
T ss_dssp             TC---CB-----CTTTSCTTEEEEECSSS
T ss_pred             cc---cc-----ChhhcccCceEeecccc
Confidence            42   11     12467899999999754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.85  E-value=0.00052  Score=48.41  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDP   36 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~   36 (173)
                      ++||+|||.|.-|..-|..|+++  |++|++||+.+.
T Consensus         1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            47999999999999999999765  789999998763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00081  Score=42.70  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||.|||.|.+|.-+|..|.+.|.+|+++++.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            689999999999999999999999999999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.84  E-value=0.00057  Score=50.96  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ++||.|||+|.-|...|..|.+.|++|.++++++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999999999999999999999999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.0022  Score=46.15  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=33.9

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+.+|++++.++..
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   46 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA   46 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            466777  6678999999999999999999999998876543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.84  E-value=0.0028  Score=46.38  Aligned_cols=39  Identities=18%  Similarity=0.134  Sum_probs=34.7

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|++.+|+.++.++..
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~   66 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA   66 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            77777  7899999999999999999999999998876544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.83  E-value=0.00071  Score=48.70  Aligned_cols=32  Identities=16%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|-+|.+.|..|.++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.82  E-value=0.00047  Score=50.41  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=31.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||.|||.|..|...|..|.++|++|+++++++
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0016  Score=48.20  Aligned_cols=40  Identities=15%  Similarity=0.085  Sum_probs=34.5

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|++++++...+
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~   54 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAD   54 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            66777  67789999999999999999999999988876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0043  Score=44.56  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=34.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++.++..+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56677  56789999999999999999999999998776543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.78  E-value=0.0031  Score=45.44  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=35.7

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.++++.+.++
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE   48 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            66677  678999999999999999999999999988776553

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.78  E-value=0.0034  Score=45.33  Aligned_cols=41  Identities=10%  Similarity=0.133  Sum_probs=35.4

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+++|+++++++..+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~   50 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS   50 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            467777  77889999999999999999999999988876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.76  E-value=0.0028  Score=45.59  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=35.5

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++.+.+.+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            67778  68889999999999999999999999998877654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0056  Score=43.70  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=35.4

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence            45566  678899999999999999999999999998877654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.73  E-value=0.0007  Score=50.55  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDP   36 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~   36 (173)
                      ++||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            468999999999999999998766  69999999854

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.73  E-value=0.0028  Score=47.25  Aligned_cols=64  Identities=16%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc------C---------CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML------G---------GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~------g---------~~~~~~~~~~~~~~dvii~~v   66 (173)
                      ++|.|. |.|.+|+.+++.|+++|++|.+..|+.++.+.+...      .         +.-..+..+++.++|.++.+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a   91 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhc
Confidence            478888 689999999999999999999999988776654321      0         111223456788899888654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.73  E-value=0.0036  Score=45.10  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++.++..++
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~   48 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE   48 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            55556  667899999999999999999999999988776553

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.72  E-value=0.0016  Score=47.19  Aligned_cols=41  Identities=17%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+++|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQ   47 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            478888  78899999999999999999999999988876543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.72  E-value=0.0011  Score=42.27  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||.|||.|.+|.-+|..|.+.|.+|++++|.+
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            589999999999999999999999999998854

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0018  Score=46.34  Aligned_cols=110  Identities=11%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .||.|+|+|.+|+.++..|.+.|. +++++|.+.=....+..        .|-..+....+.++  +.++-+...+....
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~~  110 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLD  110 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            589999999999999999999996 78899875321111111        12111111222221  45666666653211


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      -...       ...+....++++++. .......+.+....+++.++..
T Consensus       111 ~~~~-------~~~~~~~divid~~d-~~~~~~~in~~~~~~~ip~i~g  151 (247)
T d1jw9b_         111 DAEL-------AALIAEHDLVLDCTD-NVAVRNQLNAGCFAAKVPLVSG  151 (247)
T ss_dssp             HHHH-------HHHHHTSSEEEECCS-SHHHHHHHHHHHHHHTCCEEEE
T ss_pred             hccc-------cccccccceeeeccc-hhhhhhhHHHHHHHhCCCcccc
Confidence            1111       122345578888764 3445556777777778887765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.69  E-value=0.00084  Score=46.94  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      +||.|||.|.-|...|..|.++|+ +|+++++++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999999999996 799999864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.68  E-value=0.0033  Score=45.82  Aligned_cols=40  Identities=13%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   47 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET   47 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  67899999999999999999999999998876654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.68  E-value=0.0034  Score=45.18  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~   48 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA   48 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            367777  67789999999999999999999999998877655

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.68  E-value=0.0029  Score=46.00  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=35.5

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+.+|+++++++..+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~   47 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ   47 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            367777  77889999999999999999999999998876544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.0013  Score=42.17  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .++.|||.|.+|.-+|..|.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999999876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.65  E-value=0.0015  Score=41.78  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      +++.|||.|.+|.-+|..|.+.|.+|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5799999999999999999999999999988653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0031  Score=45.75  Aligned_cols=41  Identities=15%  Similarity=0.028  Sum_probs=35.9

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~   43 (173)
                      ++|++|  |.+-+|.++|+.|++. |..|++++|++++.+...+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~   46 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQ   46 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            689999  8899999999999875 8999999999998876544

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.64  E-value=0.0014  Score=41.95  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      +++.|||.|.+|.-+|..|.+.|.+|+++++++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            5899999999999999999999999999988653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.0048  Score=44.53  Aligned_cols=110  Identities=17%  Similarity=0.088  Sum_probs=70.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cCCc---eecChhhhh--cCCCEEEEeccChhhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----LGGI---RSASPMDAG--KDVSALVVVISHVDQID   73 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~---~~~~~~~~~--~~~dvii~~v~~~~~~~   73 (173)
                      ++|.=+|||. |. ++..+++.|.+|+++|.++..++.+++    .++.   ...+..+..  ...|+|+.... .....
T Consensus       122 ~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~-~~~l~  198 (254)
T d2nxca1         122 DKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLY-AELHA  198 (254)
T ss_dssp             CEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECC-HHHHH
T ss_pred             CEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccc-cccHH
Confidence            4788899997 53 455677889999999999998876654    2432   223334433  35788876654 33445


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      ..+   +.+...++||..++-+. ........+.+.++++|...+.
T Consensus       199 ~l~---~~~~~~LkpGG~lilSg-il~~~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         199 ALA---PRYREALVPGGRALLTG-ILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             HHH---HHHHHHEEEEEEEEEEE-EEGGGHHHHHHHHHHTTCEEEE
T ss_pred             HHH---HHHHHhcCCCcEEEEEe-cchhhHHHHHHHHHHCCCEEEE
Confidence            555   45667788876665422 2233456777777777776544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0016  Score=41.82  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +++.|||.|.+|.-+|..|.+.|.+|++++|++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            589999999999999999999999999998864

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0047  Score=39.12  Aligned_cols=107  Identities=19%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcC
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFG   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~   78 (173)
                      .||.+.|. |+-|+-.++.+.+.|.+|. ...+  .+-.. .-.|+.+.++.+|+.+  ++|.-++-+|.+...+.++  
T Consensus         7 trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtP--gkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~--   81 (119)
T d2nu7a1           7 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTP--GKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL--   81 (119)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH--
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHhCCceEEEEcc--CCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH--
Confidence            58999998 9999999999999998865 3343  32111 1136788899998875  6899999999665554444  


Q ss_pred             ccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhcCCceee
Q 044797           79 HEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~~g~~~v  118 (173)
                       +.+...+   ++++.++ .+.+.+..++.+.++.++.+.+
T Consensus        82 -EAi~agI---~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          82 -EAIDAGI---KLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             -HHHHTTC---SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             -HHHHCCC---CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence             2232223   3444444 4566777788888877776654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.57  E-value=0.0019  Score=41.11  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .++.|||.|.+|.-+|..|.+.|.+|++..+++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            689999999999999999999999999997654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.56  E-value=0.0044  Score=44.19  Aligned_cols=41  Identities=7%  Similarity=0.069  Sum_probs=33.9

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCe-------EEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYK-------VQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~-------V~~~d~~~~~~~~~~~   43 (173)
                      ++|.+|  |.+.+|.++|+.|++.|++       |..++|++++++++.+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~   50 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL   50 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence            466666  5677999999999999986       8899999998876644

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.55  E-value=0.0043  Score=44.29  Aligned_cols=41  Identities=15%  Similarity=0.120  Sum_probs=34.1

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.+++++..++
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   48 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA   48 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            55556  566699999999999999999999999988766553

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.55  E-value=0.0017  Score=41.56  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ++|.|||.|.+|.-+|..|.+.|.+|+++++.+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            589999999999999999999999999998764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.54  E-value=0.0013  Score=47.08  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~   36 (173)
                      ++|.|||.|.-|..+|..|.++|. +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            589999999999999999999995 8999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0013  Score=43.56  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=29.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      +++.|||.|.+|..-++.|+++|.+|+++.+.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            68999999999999999999999999999654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.53  E-value=0.0031  Score=45.91  Aligned_cols=40  Identities=10%  Similarity=0.069  Sum_probs=34.7

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   46 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ   46 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            66777  77889999999999999999999999988876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.52  E-value=0.0017  Score=41.05  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ..++.|||.|..|.-+|..|.+.|.+|+++++.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            3689999999999999999999999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0011  Score=48.83  Aligned_cols=34  Identities=21%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |.+|.|||+|..|...|..|.+.|++|.++++++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4579999999999999999999999999999875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0017  Score=46.58  Aligned_cols=41  Identities=22%  Similarity=0.233  Sum_probs=37.0

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~   49 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY   49 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            77888  899999999999999999999999999988776654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.011  Score=42.07  Aligned_cols=41  Identities=20%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      |+.+|  |.+.+|.++++.|++.|++|.+.+|++++++++.++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE   48 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            45555  457799999999999999999999999988877654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.45  E-value=0.003  Score=45.57  Aligned_cols=39  Identities=15%  Similarity=0.087  Sum_probs=32.8

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.++.++..
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   50 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVT   50 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            66666  6677999999999999999999999987765543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.45  E-value=0.0016  Score=47.61  Aligned_cols=34  Identities=12%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~   35 (173)
                      +.+|.|||.|-+|.+.|..|++.|. +|+++|+++
T Consensus         1 t~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           1 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            3589999999999999999999995 799999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.44  E-value=0.0022  Score=41.67  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      .+|.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            5899999999999999999999999999988653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.42  E-value=0.0013  Score=47.40  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=46.2

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHH------HHH---HHHcCCcee-------cChhhhhcCCCEEEE
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPL------VDK---FFMLGGIRS-------ASPMDAGKDVSALVV   64 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~------~~~---~~~~g~~~~-------~~~~~~~~~~dvii~   64 (173)
                      .+||.|.| .|.+|+.+++.|++.|++|++.+|++..      ...   +...++...       .+..+.++.++.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            47899997 5999999999999999999999986533      222   222233322       123355678888887


Q ss_pred             ecc
Q 044797           65 VIS   67 (173)
Q Consensus        65 ~v~   67 (173)
                      +..
T Consensus        83 ~~~   85 (307)
T d1qyca_          83 TVG   85 (307)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            765

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0031  Score=46.86  Aligned_cols=31  Identities=16%  Similarity=0.199  Sum_probs=28.8

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      |||.|+ |.|.+|+.+++.|++.|++|++.||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            589999 7899999999999999999999976

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.40  E-value=0.0085  Score=42.88  Aligned_cols=42  Identities=19%  Similarity=0.165  Sum_probs=34.4

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG   45 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g   45 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++.+...+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~   49 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIG   49 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC
Confidence            56666  6889999999999999999999999988765544433

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=96.39  E-value=0.0039  Score=44.99  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV   82 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i   82 (173)
                      .||++||.  +  +....+.+.|.+++++||+|.       .|.......++++.+||++|+.-.  ..+...+   +.+
T Consensus       123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiTGs--TlvN~Tl---~~L  186 (251)
T d2h1qa1         123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITCA--SVVDKTL---PRL  186 (251)
T ss_dssp             SEEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEETH--HHHHTCH---HHH
T ss_pred             CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEEec--hhhcCCH---HHH
Confidence            58999975  4  677888899999999999974       244444556788999999998854  3445555   456


Q ss_pred             hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ++..++...++-.+.+.|-.    -+.+ ++|+.++...
T Consensus       187 L~~~~~a~~vvl~GPS~p~~----P~lf-~~Gv~~lag~  220 (251)
T d2h1qa1         187 LELSRNARRITLVGPGTPLA----PVLF-EHGLQELSGF  220 (251)
T ss_dssp             HHHTTTSSEEEEESTTCCCC----GGGG-GTTCSEEEEE
T ss_pred             HHhCCcCCEEEEECCCcccC----HHHH-hcCCceEeEE
Confidence            77777887776665444432    1233 4788876554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.39  E-value=0.0012  Score=47.51  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |||.|.|. |.+|+.+++.|.+.|++|+..||+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            68999986 9999999999999999999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0022  Score=45.79  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+++|  |.+.+|.++++.|++.|++|.+.+|+.++.+...+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            67777  77889999999999999999999999888776554

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0022  Score=46.42  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ..||.|||.|.-|..-|..|.++|++|++++.++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4689999999999999999999999999998764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.34  E-value=0.0022  Score=45.34  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=33.1

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |...|.|||.|..|...|..|.++|++|.++++++.
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            667899999999999999999999999999998764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0021  Score=47.90  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             CCCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            1 MASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         1 m~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      |.+||.|. |+|.+|+.+++.|++.|++|++.|+
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            88899888 7999999999999999999999874

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0019  Score=48.06  Aligned_cols=65  Identities=12%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCce-----ec--Chh-hhhcCCCEEEEecc
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIR-----SA--SPM-DAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~-----~~--~~~-~~~~~~dvii~~v~   67 (173)
                      |||.|. |.|.+|+.+++.|++.|+ +|++.|+...+...+.+. .++.     ++  +.. ...+++|+|+-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            589888 689999999999999994 899998876554444332 1111     11  112 25667999998653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0055  Score=41.32  Aligned_cols=72  Identities=10%  Similarity=-0.010  Sum_probs=50.6

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-----cChhhhh------cCCCEEEEeccChh
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-----ASPMDAG------KDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~------~~~dvii~~v~~~~   70 (173)
                      .+|.|. |.|.+|....+.....|.+|++.++++++.+.+++.|+...     .+..+.+      ...|+++-++. .+
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g-~~  108 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-RD  108 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-GG
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc-HH
Confidence            367788 55569999999999999999999999999999888876422     1222211      23577777775 44


Q ss_pred             hhhhh
Q 044797           71 QIDDI   75 (173)
Q Consensus        71 ~~~~v   75 (173)
                      .....
T Consensus       109 ~~~~~  113 (179)
T d1qora2         109 TWERS  113 (179)
T ss_dssp             GHHHH
T ss_pred             HHHHH
Confidence            44333

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.31  E-value=0.0062  Score=38.68  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      +||-+.|. |+.|+-.++...+.|-+|.. ..+|.+-.. .-.++.+.++..|+.+  ++|+-++.+|.+...+.++   
T Consensus         8 trVivQGiTG~~G~~ht~~m~~yGT~iVa-GVtPgkgG~-~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~---   82 (121)
T d1oi7a1           8 TRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAAL---   82 (121)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHH---
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHhCCceEe-eeecCCCCc-EEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHH---
Confidence            58989997 99999999999999987652 223332111 0136778889888865  6899999999555544444   


Q ss_pred             cchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcCCceee
Q 044797           80 EGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +.+...+   ++++.++- +.+.+..++.+.++.++.+.+
T Consensus        83 EAi~agI---~liv~ITEgVPv~Dm~~i~~~~~~~~~~li  119 (121)
T d1oi7a1          83 EAAHAGI---PLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (121)
T ss_dssp             HHHHTTC---SEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHhCCC---cEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence            2233322   34555544 556667777787777776654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.28  E-value=0.011  Score=42.58  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=28.1

Q ss_pred             eEEEEeC-C--hhhHHHHHHHHHCCCeEEEEcCChHHH
Q 044797            4 KVGFVGL-D--EYSVDMAASLIRSGYKVQAFEISDPLV   38 (173)
Q Consensus         4 ~IgiiG~-G--~mG~~ia~~l~~~g~~V~~~d~~~~~~   38 (173)
                      ++-|.|. |  .+|.++|+.|++.|++|++.+|+++..
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~   44 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE   44 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            3444475 5  499999999999999999999986533

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.26  E-value=0.0019  Score=41.30  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      .++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            5899999999999999999999999999988653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.24  E-value=0.0036  Score=45.32  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            467777  67789999999999999999999999998877654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.24  E-value=0.0025  Score=45.03  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      ++|.|||.|.-|...|..|++.|++|++++++++
T Consensus        50 k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          50 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            6899999999999999999999999999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.23  E-value=0.0035  Score=39.67  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=31.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      ++|.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            5899999999999999999999999999988653

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.22  E-value=0.014  Score=41.53  Aligned_cols=40  Identities=23%  Similarity=0.110  Sum_probs=32.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEE-cCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAF-EISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~-d~~~~~~~~~~~   43 (173)
                      +|.+|  |.+.+|.++|+.|++.|++|.+. .|+++..+++.+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~   44 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK   44 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            57777  78899999999999999999875 567777665543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.20  E-value=0.011  Score=42.62  Aligned_cols=37  Identities=19%  Similarity=0.053  Sum_probs=31.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChH-HHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDP-LVDK   40 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~   40 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.+ ..+.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~   47 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANS   47 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHH
Confidence            77888  7889999999999999999999998854 4443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.19  E-value=0.00034  Score=49.33  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=23.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCe
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYK   27 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~   27 (173)
                      |||.|||+|-+|...|..|+++|++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5999999999999999999999974

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.17  E-value=0.0028  Score=47.47  Aligned_cols=65  Identities=12%  Similarity=0.020  Sum_probs=43.1

Q ss_pred             CCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHH-HH-HHHc-----CCceecChhhhhcCCCEEEEec
Q 044797            2 ASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLV-DK-FFML-----GGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~-~~~~-----g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      .|||.|. |.|.+|+.+++.|++.|++|+++|+..... .. ....     .+.-.....++.+++|.|+.+.
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            4899999 699999999999999999999998653321 11 1000     0111112334567899888765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.17  E-value=0.0025  Score=47.08  Aligned_cols=33  Identities=21%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      +|.|||+|.-|.++|..|.+.|.+|++++++++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            689999999999999999999999999998754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.013  Score=41.87  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             eEEEE-eCC---hhhHHHHHHHHHCCCeEEEEcCChHHHHH
Q 044797            4 KVGFV-GLD---EYSVDMAASLIRSGYKVQAFEISDPLVDK   40 (173)
Q Consensus         4 ~Igii-G~G---~mG~~ia~~l~~~g~~V~~~d~~~~~~~~   40 (173)
                      |+.+| |++   .+|.++|+.|++.|++|.+.+|+++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            55555 763   59999999999999999999998665443

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.10  E-value=0.012  Score=41.95  Aligned_cols=36  Identities=11%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             CCeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797            2 ASKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPL   37 (173)
Q Consensus         2 ~~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~   37 (173)
                      .-|+++|  |.+.+|.++|+.|++.|++|.+.||++++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            3477777  66789999999999999999999998643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.09  E-value=0.017  Score=41.64  Aligned_cols=38  Identities=26%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCC-hHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKF   41 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~-~~~~~~~   41 (173)
                      |+.+|  |.+.+|.++++.|++.|++|.+.+++ ++.++.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            67777  68999999999999999999988876 4444443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.08  E-value=0.013  Score=42.11  Aligned_cols=39  Identities=18%  Similarity=0.257  Sum_probs=32.5

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCC-hHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKF   41 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~-~~~~~~~   41 (173)
                      -|+.+|  |.+.+|.++|+.|++.|++|.+.+|+ ++..+++
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~   45 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKV   45 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            478888  77889999999999999999999987 4555544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0033  Score=43.43  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CCCe--EEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         1 m~~~--IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |+..  |.|||.|.-|...|..|+++|++|.++++++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            5443  6899999999999999999999999999975

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.04  E-value=0.0017  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~   35 (173)
                      .||+|||.|.-|...|..|.++|       ++|++|++.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            48999999999999999999988       4799999875

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.03  E-value=0.0031  Score=44.95  Aligned_cols=34  Identities=12%  Similarity=0.156  Sum_probs=29.4

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |||.+|  |.+.+|.++|+.|++.|++|.+.||+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            577777  5678999999999999999999998754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.0067  Score=42.96  Aligned_cols=65  Identities=17%  Similarity=0.031  Sum_probs=43.8

Q ss_pred             CCeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--CceecChh---hhhcCCCEEEEec
Q 044797            2 ASKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--GIRSASPM---DAGKDVSALVVVI   66 (173)
Q Consensus         2 ~~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--~~~~~~~~---~~~~~~dvii~~v   66 (173)
                      .-|+.+|  |.+.+|.++++.|++.|++|.+.+|+++.+++....-  +...+..+   +.+...|++|.+.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            3455566  5688999999999999999999999988776542210  11112222   3344688888764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0025  Score=44.99  Aligned_cols=65  Identities=11%  Similarity=-0.014  Sum_probs=45.8

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCC-------ceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGG-------IRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~~dvii~~v~   67 (173)
                      ++|.|. |.|.+|+.+++.|++.|.  +|++.+|++.+...-....+       ...++..++++++|+++.++.
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence            578888 689999999999999884  89999987644321111111       122345667789999998864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.028  Score=35.61  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             CeEEEEeCC-----------hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEE-EeccChh
Q 044797            3 SKVGFVGLD-----------EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV-VVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G-----------~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii-~~v~~~~   70 (173)
                      +||-|||.|           ..+...++.|++.|+++.+.|.||+..          .++++    -+|-+. ..+. ..
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----------std~d----~aD~lYfeplt-~e   69 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----------STDYD----TSDRLYFEPVT-LE   69 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----------TTSTT----SSSEEECCCCS-HH
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----------hcChh----hcCceEEccCC-HH
Confidence            689999998           567788899999999999999999753          22222    244444 3443 45


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHH
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLF  136 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~  136 (173)
                      .+.+++.       .-+|..+++..+.   .+...+...|.+.|++       ++|.+.+..+.+|
T Consensus        70 ~v~~Ii~-------~E~p~~ii~~~GG---Qtalnla~~L~~~gv~-------iLGt~~~~Id~aE  118 (121)
T d1a9xa4          70 DVLEIVR-------IEKPKGVIVQYGG---QTPLKLARALEAAGVP-------VIGTSPDAIDRAE  118 (121)
T ss_dssp             HHHHHHH-------HHCCSEEECSSST---HHHHTTHHHHHHTTCC-------BCSSCHHHHHHHH
T ss_pred             HHHHHHH-------HhCCCEEEeehhh---hhHHHHHHHHHHcCCc-------EECCCHHHHHHHH
Confidence            5666652       2246666665543   3455667777777765       3566666555544

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.95  E-value=0.0036  Score=46.64  Aligned_cols=65  Identities=9%  Similarity=-0.062  Sum_probs=46.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHH--HHHHc-CCce-----ec---ChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVD--KFFML-GGIR-----SA---SPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~--~~~~~-g~~~-----~~---~~~~~~~~~dvii~~v~   67 (173)
                      ++|.|+| .|.+|+.+++.|++.|++|++..|++++..  .+... +++.     .+   ....++..+|.++...+
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~   80 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   80 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence            6899996 699999999999999999999988766543  33332 4332     11   12346778898888765

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0075  Score=43.24  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             CCCeEEEE--eCChhhHHHHHHHHH---CCCeEEEEcCChHHHHHHHH
Q 044797            1 MASKVGFV--GLDEYSVDMAASLIR---SGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         1 m~~~Igii--G~G~mG~~ia~~l~~---~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |.-||++|  |...+|.++|+.|++   .|+.|.+.+|++++++.+.+
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~   51 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE   51 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence            34689999  557899999999985   79999999999998876543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.90  E-value=0.013  Score=39.68  Aligned_cols=85  Identities=11%  Similarity=0.017  Sum_probs=60.0

Q ss_pred             eEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-----cCh-hhhh-----cCCCEEEEeccChhh
Q 044797            4 KVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-----ASP-MDAG-----KDVSALVVVISHVDQ   71 (173)
Q Consensus         4 ~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----~~~-~~~~-----~~~dvii~~v~~~~~   71 (173)
                      +|.|.|. |.+|...++.....|.+|++..+++++.+.+.+.|....     .+. +...     +..|+|+-++. .+.
T Consensus        32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~~~  110 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-GEF  110 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-HHH
T ss_pred             EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-chh
Confidence            5666666 779999999999999999999999999998888875421     111 1211     35899999986 444


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      .++.+       ..++++..++..+
T Consensus       111 ~~~~~-------~~l~~~G~~v~~G  128 (182)
T d1v3va2         111 LNTVL-------SQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHG-------GGEEEEEEEEECC
T ss_pred             hhhhh-------hhccCCCeEEeec
Confidence            44443       4566666776664

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0077  Score=43.49  Aligned_cols=40  Identities=23%  Similarity=0.151  Sum_probs=34.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.++++++.+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            55666  56679999999999999999999999998877644

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.83  E-value=0.0011  Score=42.78  Aligned_cols=36  Identities=14%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEE-EEcCChHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQ-AFEISDPLV   38 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~-~~d~~~~~~   38 (173)
                      .++.|+|+|++|.++++.+. +.++++. .+|-++++.
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~   41 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV   41 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc
Confidence            37899999999999998764 3566765 568777654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.81  E-value=0.0053  Score=39.33  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=30.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .++.|||.|.+|.-+|..|.+.|.+|++.++.+
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            589999999999999999999999999998765

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.79  E-value=0.011  Score=39.68  Aligned_cols=86  Identities=19%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh---------cCCCEEEEeccChhhhh
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG---------KDVSALVVVISHVDQID   73 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---------~~~dvii~~v~~~~~~~   73 (173)
                      +|.|-| .|.+|....+.....|.+|++..+++++.+.+.+.|+....+.++..         +..|+|+-++- ...+.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg-g~~~~  104 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG-GKQLA  104 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC-THHHH
T ss_pred             EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc-HHHHH
Confidence            476776 69999999999999999999999999999999888876544333221         24677887776 33344


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st   97 (173)
                      +.+       ..++++-.++..+.
T Consensus       105 ~~~-------~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         105 SLL-------SKIQYGGSVAVSGL  121 (167)
T ss_dssp             HHH-------TTEEEEEEEEECCC
T ss_pred             HHH-------HHhccCceEEEeec
Confidence            333       44566666665543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.74  E-value=0.0052  Score=44.12  Aligned_cols=31  Identities=19%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .|.|||.|-.|...|..|.++|++|+++|+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4889999999999999999999999999985

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.73  E-value=0.0082  Score=40.79  Aligned_cols=87  Identities=15%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecCh----hhhh-----cCCCEEEEeccChhhhh
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASP----MDAG-----KDVSALVVVISHVDQID   73 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~----~~~~-----~~~dvii~~v~~~~~~~   73 (173)
                      +|.|.| .|.+|+...+-....|.+|++..+++++.+.+.+.|+...-+.    .+..     +..|+|+-++.. ..+.
T Consensus        34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg-~~~~  112 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-RTLA  112 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-TTHH
T ss_pred             EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc-hhHH
Confidence            477776 7999999999999999999999999999999888876532211    1211     246888888763 3344


Q ss_pred             hhhcCccchhhcCCCCCEEEEcCCC
Q 044797           74 DIFFGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        74 ~v~~~~~~i~~~l~~g~~ii~~st~   98 (173)
                      ..+       ..++++-.++.++..
T Consensus       113 ~~l-------~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         113 TVL-------SRMRYGGAVAVSGLT  130 (176)
T ss_dssp             HHH-------HTEEEEEEEEECSCC
T ss_pred             HHH-------HHhCCCceEEEeecc
Confidence            333       456677777777543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.69  E-value=0.0059  Score=40.46  Aligned_cols=33  Identities=21%  Similarity=0.079  Sum_probs=29.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~   35 (173)
                      +||.|||.|..|..+|..|.+.+.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999999999999999998874  789998876

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.68  E-value=0.0055  Score=41.93  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=28.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~   35 (173)
                      |||.|||.|..|..+|..|++.+  .+|++++|++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            69999999999999999998764  5799998753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0053  Score=45.13  Aligned_cols=63  Identities=8%  Similarity=-0.041  Sum_probs=41.3

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCC-hHHHHHHHHc----CCce--ecChhhhhcCCCEEEEe
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKFFML----GGIR--SASPMDAGKDVSALVVV   65 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~~----g~~~--~~~~~~~~~~~dvii~~   65 (173)
                      +||.|. |.|.+|+.+++.|++.|++|+++|+. ..+.+.+...    ....  .+..+.+..++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            689888 78999999999999999999999863 2222211111    1111  12233445679998865

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0056  Score=45.30  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CeEE-EE-eCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVG-FV-GLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~Ig-ii-G~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      +||+ |. |.|.+|+.+++.|++.|++|++.||.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5785 44 789999999999999999999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.55  E-value=0.018  Score=41.25  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEE-EcCChHHHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQA-FEISDPLVDKFF   42 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~   42 (173)
                      |+.+|  |.+.+|.++|+.|++.|++|++ ++++.+..+++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~   48 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV   48 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHH
Confidence            66677  7788999999999999999987 566666665543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.47  E-value=0.0073  Score=42.93  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=33.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      ..|.|||.|..|...|..+.++|++|.++++++..-.++
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            359999999999999999999999999999987544443

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.47  E-value=0.03  Score=37.67  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      +||||=|+|++|..+.+.|...+.+|.+.|-
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECC
Confidence            5999999999999999999988999887763

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0067  Score=44.27  Aligned_cols=31  Identities=32%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             EEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |.|||.|.-|..-|..|.++|++|+++++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.41  E-value=0.036  Score=37.69  Aligned_cols=96  Identities=13%  Similarity=0.008  Sum_probs=61.8

Q ss_pred             CeEEEEe-C-ChhhHHHHHHHHHCCCeEEEEcCC-----hHHHHHHHH----cC--CceecChhhhhcCCCEEEEeccC-
Q 044797            3 SKVGFVG-L-DEYSVDMAASLIRSGYKVQAFEIS-----DPLVDKFFM----LG--GIRSASPMDAGKDVSALVVVISH-   68 (173)
Q Consensus         3 ~~IgiiG-~-G~mG~~ia~~l~~~g~~V~~~d~~-----~~~~~~~~~----~g--~~~~~~~~~~~~~~dvii~~v~~-   68 (173)
                      .||++|| + -++..+++..+...|.+++++.+.     ++-.+.+.+    .+  +..++++.++++++|+|..-.-- 
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~w~~   85 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVS   85 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSC
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeehhhh
Confidence            4899999 4 589999999999999999988763     333333222    23  45788999999999998875421 


Q ss_pred             ---hhhh----hhhh---c-CccchhhcCCCCCEEEEcCCC
Q 044797           69 ---VDQI----DDIF---F-GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        69 ---~~~~----~~v~---~-~~~~i~~~l~~g~~ii~~st~   98 (173)
                         ....    ....   . ....+....+++.+|+.+-..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~LPa  126 (185)
T d1dxha2          86 MGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA  126 (185)
T ss_dssp             SSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred             hhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCCch
Confidence               0110    0010   0 011233345788899998763

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.40  E-value=0.13  Score=32.56  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccCh-------hhhhhhhcCccchhh
Q 044797           12 EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHV-------DQIDDIFFGHEGVLK   84 (173)
Q Consensus        12 ~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~-------~~~~~v~~~~~~i~~   84 (173)
                      .++..+++.+.+.|++|.+++.+...              +.+ +.++|.+++.+|.-       ..+...+   +.+..
T Consensus        14 ~vA~~ia~~l~~~g~~v~~~~~~~~~--------------~~~-l~~~~~~i~g~pt~~~g~~p~~~~~~~~---~~~~~   75 (138)
T d5nula_          14 KMAELIAKGIIESGKDVNTINVSDVN--------------IDE-LLNEDILILGCSAMTDEVLEESEFEPFI---EEIST   75 (138)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEGGGCC--------------HHH-HTTCSEEEEEECCBTTTBCCTTTHHHHH---HHHGG
T ss_pred             HHHHHHHHHHHhcCCcceeccccccc--------------ccc-cccCCeEEEEEeccCCCCCChHHHHHHH---HHhCc
Confidence            35677888888888888888754321              223 45689999888732       1223232   12222


Q ss_pred             cCCCCCE---EEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhh
Q 044797           85 GLQKGAV---IILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEF  142 (173)
Q Consensus        85 ~l~~g~~---ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~  142 (173)
                      .+ +++.   +.+.........+.+.+.+...|...+..+...-..+++..+.++.+-+.+
T Consensus        76 ~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~~~~~~p~e~~~~~~~~g~~l  135 (138)
T d5nula_          76 KI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQDCIEFGKKI  135 (138)
T ss_dssp             GC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGHHHHHHHHHHH
T ss_pred             cC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcEEECCCCcHHHHHHHHHHHHH
Confidence            22 3333   333333334556788889998998877766444445555556666554443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.017  Score=33.66  Aligned_cols=42  Identities=19%  Similarity=0.187  Sum_probs=36.6

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG   45 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g   45 (173)
                      +|.|. |.|.+|+...+.+...|++|++..+++++.+.+++.|
T Consensus        34 ~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             cEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            56666 5699999999999999999999999999998887765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.34  E-value=0.023  Score=40.74  Aligned_cols=105  Identities=11%  Similarity=-0.033  Sum_probs=65.2

Q ss_pred             CeEEEEeCChh--hHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C----Cc-eecChhhhh--cCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEY--SVDMAASLIRSGYKVQAFEISDPLVDKFFML----G----GI-RSASPMDAG--KDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~m--G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g----~~-~~~~~~~~~--~~~dvii~~v~~~   69 (173)
                      ++|.=+|+|.=  ...+|+.+... -+|+.+|++++.++.+.+.    +    +. ...+..+..  ...|.|++-+|++
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~p  165 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDP  165 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSCG
T ss_pred             CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCCch
Confidence            57778877654  44455554333 4899999999988766542    1    11 112333333  2479999988876


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ..   ++   +.+...|+||..++..+. ..+..+++.+.+++.|.
T Consensus       166 ~~---~l---~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         166 WN---HV---QKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             GG---SH---HHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGTE
T ss_pred             HH---HH---HHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCCC
Confidence            53   23   345567888887775543 24556777777777764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.29  E-value=0.0097  Score=43.52  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=27.1

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      ||.|. |+|.+|+.+++.|+++|++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            78777 7999999999999999999999874

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.26  E-value=0.0078  Score=44.61  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=31.9

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLV   38 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~   38 (173)
                      +||.|.| .|.+|+.+++.|++.|++|.+++|+..+.
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~   45 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV   45 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence            6899995 89999999999999999999999976543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.047  Score=38.57  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             eEEEE-eCC---hhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797            4 KVGFV-GLD---EYSVDMAASLIRSGYKVQAFEISDPLVDKF   41 (173)
Q Consensus         4 ~Igii-G~G---~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~   41 (173)
                      |+.+| |.+   .+|.++|+.|++.|++|.+.+|+++..+.+
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            45555 654   488999999999999999999986655443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.21  E-value=0.0077  Score=44.29  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             eEEEEeCChhhHHHHHHHH-----HCCCeEEEEcCChH
Q 044797            4 KVGFVGLDEYSVDMAASLI-----RSGYKVQAFEISDP   36 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~-----~~g~~V~~~d~~~~   36 (173)
                      .|.|||.|..|..+|..|+     ++|++|+++++++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            5899999999999999995     58999999998753

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.15  E-value=0.014  Score=41.48  Aligned_cols=44  Identities=9%  Similarity=0.067  Sum_probs=36.7

Q ss_pred             CCCeEEEE--eCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHc
Q 044797            1 MASKVGFV--GLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFML   44 (173)
Q Consensus         1 m~~~Igii--G~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~   44 (173)
                      |.+|..+|  |.+.+|.++|+.|++.|+  .|.+..|+.++++.+.+.
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~   48 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI   48 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh
Confidence            77676677  788999999999999995  577889999988887664

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=95.15  E-value=0.13  Score=33.05  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccCh-----hhhhhhhcCccchhhcC
Q 044797           12 EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHV-----DQIDDIFFGHEGVLKGL   86 (173)
Q Consensus        12 ~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~-----~~~~~v~~~~~~i~~~l   86 (173)
                      .|...+++.+.+.|+++.+++.+....+.+           ...+.++|.|++..|..     ..++..+   +.+...-
T Consensus        18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~-----------~~~~~~~d~ii~Gspt~~g~~~~~~~~~l---~~l~~~~   83 (149)
T d1ycga1          18 KMAHALMDGLVAGGCEVKLFKLSVSDRNDV-----------IKEILDARAVLVGSPTINNDILPVVSPLL---DDLVGLR   83 (149)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEGGGSCHHHH-----------HHHHHHCSEEEEECCCBTTBCCGGGHHHH---HHHHHHC
T ss_pred             HHHHHHHHHHHhcCCeeEEEEccccchHHH-----------hhhhhhCCeEEEEeecccCCCCHHHHHHH---HHHhccc
Confidence            477788999999999999887654332221           12234699999999832     2344444   2233322


Q ss_pred             CCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeec--CHhhHHHHHHH
Q 044797           87 QKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISS--SIDCFTYLFLV  138 (173)
Q Consensus        87 ~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g--~~~~~~~~~~~  138 (173)
                      .+++.+.-.+  .......+.+.+.+...|...+..+....-+  +++..+.++.+
T Consensus        84 ~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~~~~P~~~dl~~~~e~  139 (149)
T d1ycga1          84 PKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYEL  139 (149)
T ss_dssp             CSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHH
T ss_pred             cCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEEEcccCCHHHHHHHHHH
Confidence            2344332221  1223456888899998999888765433333  23344444444

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.028  Score=44.65  Aligned_cols=113  Identities=9%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--------CCceecChhhhhc--CCCEEEEeccChhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--------GGIRSASPMDAGK--DVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~~dvii~~v~~~~~   71 (173)
                      .+|.++|+|..|+-++++|...|. .++++|.+.=....+..+        |-..+....+.+.  +.++-+..+..  .
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~--~  103 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--S  103 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS--C
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC--C
Confidence            589999999999999999999995 789998764333333221        2111111111121  23433333321  1


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ..+....   -...+..-++|+++. ..+.....+.+.+.++++.++..+
T Consensus       104 ~~~~~~~---~~~~~~~~dvVv~~~-~~~~~~~~l~~~c~~~~ip~i~~~  149 (529)
T d1yova1         104 PENLLDN---DPSFFCRFTVVVATQ-LPESTSLRLADVLWNSQIPLLICR  149 (529)
T ss_dssp             HHHHHHS---CGGGGGGCSEEEEES-CCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             chhhhhh---HHHHhcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEe
Confidence            2222211   112334456777664 456667778888888888877553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.13  E-value=0.022  Score=40.53  Aligned_cols=40  Identities=13%  Similarity=0.134  Sum_probs=31.3

Q ss_pred             eEEEE-eC-Ch--hhHHHHHHHHHCCCeEEEEcCChHHH-HHHHH
Q 044797            4 KVGFV-GL-DE--YSVDMAASLIRSGYKVQAFEISDPLV-DKFFM   43 (173)
Q Consensus         4 ~Igii-G~-G~--mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~   43 (173)
                      |+.+| |+ |.  +|.++|+.|++.|++|.+.+|+.++. +++.+
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~   51 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD   51 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence            44455 85 54  99999999999999999999998776 44444

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.05  E-value=0.004  Score=42.07  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCCCeEEEE
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAF   31 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~   31 (173)
                      |..+|.|||.|..|.-+|..|++.|.++.+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~   32 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLIT   32 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEE
Confidence            7789999999999999999999999765433

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.02  E-value=0.027  Score=40.42  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=31.4

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEc-CChHHHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFE-ISDPLVDKFF   42 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d-~~~~~~~~~~   42 (173)
                      +.|++|  |.+.+|.++|+.|++.|++|.+.+ ++.+..+++.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            578899  667899999999999999998765 4555555443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.026  Score=38.20  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhh-----h--cCCCEEEEeccChhhhhhh
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA-----G--KDVSALVVVISHVDQIDDI   75 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~-----~--~~~dvii~~v~~~~~~~~v   75 (173)
                      +|.|. |.|.+|+...+.....|.+|++..+++++.+.+.+.|+..+-+..+.     +  ...|.++-++. ...+.. 
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg-g~~~~~-  111 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG-DKVLAK-  111 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC-HHHHHH-
T ss_pred             cEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc-hHHHHH-
Confidence            45444 67999999999999999999999999999988888776543322221     1  12477777765 333333 


Q ss_pred             hcCccchhhcCCCCCEEEEcCC
Q 044797           76 FFGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        76 ~~~~~~i~~~l~~g~~ii~~st   97 (173)
                            ..+.++++-.++.++.
T Consensus       112 ------~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         112 ------VLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ------HHHTEEEEEEEEECCC
T ss_pred             ------HHHHhccccceEeecc
Confidence                  3345666777777654

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.058  Score=35.63  Aligned_cols=64  Identities=11%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CeEEEEe-C-ChhhHHHHHHHHHCCCeEEEEcCCh-----HHHHHH----HHcC--CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVG-L-DEYSVDMAASLIRSGYKVQAFEISD-----PLVDKF----FMLG--GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG-~-G~mG~~ia~~l~~~g~~V~~~d~~~-----~~~~~~----~~~g--~~~~~~~~~~~~~~dvii~~v   66 (173)
                      .||+++| + .++-.+++..+...|++++++.+..     +-.+..    .+.+  +...++++++++++|+|..-.
T Consensus         4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            5899999 3 5899999999999999999886632     222221    1222  456788999999999998755

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=94.91  E-value=0.054  Score=39.00  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             CeEEEEeCChh--hHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cCCc-----eecChhhh--hcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEY--SVDMAASLIRSGYKVQAFEISDPLVDKFFM----LGGI-----RSASPMDA--GKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~m--G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~-----~~~~~~~~--~~~~dvii~~v~~~   69 (173)
                      ++|.=+|||.=  ...+|+.+.. +-+|+.+|.+++.++.+++    .+..     ...+..+.  ...+|.|++-+|++
T Consensus       105 ~~VLDiG~GsG~lt~~lA~~~~~-~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p~p  183 (266)
T d1o54a_         105 DRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP  183 (266)
T ss_dssp             CEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCSCG
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCCCH
Confidence            46777877663  3344433322 3489999999998876544    2321     11222222  23578899999976


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ..   ++   +.+...|+||..++..+. ..+..++..+.+++.|.
T Consensus       184 ~~---~l---~~~~~~LKpGG~lv~~~P-~~~Qv~~~~~~l~~~gF  222 (266)
T d1o54a_         184 WN---YI---DKCWEALKGGGRFATVCP-TTNQVQETLKKLQELPF  222 (266)
T ss_dssp             GG---TH---HHHHHHEEEEEEEEEEES-SHHHHHHHHHHHHHSSE
T ss_pred             HH---HH---HHHHhhcCCCCEEEEEeC-cccHHHHHHHHHHHCCc
Confidence            53   33   345567888877765443 34566777888877764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.72  E-value=0.038  Score=37.48  Aligned_cols=69  Identities=12%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCC-CeEEEE-c-CChH-HHHHHHH-c---CC-ceecChhhhhcCCCEEEEeccChhh
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSG-YKVQAF-E-ISDP-LVDKFFM-L---GG-IRSASPMDAGKDVSALVVVISHVDQ   71 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~-d-~~~~-~~~~~~~-~---g~-~~~~~~~~~~~~~dvii~~v~~~~~   71 (173)
                      .||+|+| .|..|.-+.+.|.++- +++... . ++.. +...... .   .. .......+...++|++|.|+|....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            5899995 7999999999998875 355433 2 2221 2222111 1   11 1122234456789999999996543

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.71  E-value=0.064  Score=34.22  Aligned_cols=108  Identities=15%  Similarity=0.084  Sum_probs=69.1

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH   79 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~   79 (173)
                      .||-+.|. |+-|+-.++.+.+.|-+|.+- .+|.+-.. .-.|+.+.++..|+.+  ++|.-++.+|.+...+.++   
T Consensus        16 TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgKgG~-~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~---   90 (130)
T d1euca1          16 TKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAIN---   90 (130)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHH---
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCCCCc-cccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHH---
Confidence            58889998 999999999999999887532 22322111 1136778889998876  7999999999555544444   


Q ss_pred             cchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhc-CCceee
Q 044797           80 EGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTG-NLTFYI  118 (173)
Q Consensus        80 ~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~-~g~~~v  118 (173)
                      +.+...+   ++++-++- +.+.+..++.+.+.+ .+.+.+
T Consensus        91 EAi~agI---~liV~ITEgIPv~Dm~~i~~~~~~~~~~~li  128 (130)
T d1euca1          91 EAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI  128 (130)
T ss_dssp             HHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred             HHHhCCC---CEEEEecCCCCHHHHHHHHHHHHhCCCcEEe
Confidence            2233333   35555554 455555666665533 335443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.68  E-value=0.016  Score=42.52  Aligned_cols=32  Identities=16%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |+.+|  |.|.+|+.+++.|++.|++|++.||..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            44455  799999999999999999999999853

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.017  Score=43.09  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=26.8

Q ss_pred             eEE-EE-eCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVG-FV-GLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~Ig-ii-G~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |+. |. |.|.+|+.+++.|++.|++|++.||.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            556 55 599999999999999999999999854

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.65  E-value=0.037  Score=40.71  Aligned_cols=31  Identities=10%  Similarity=0.018  Sum_probs=27.5

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      ++|-|. |+|.+|+.+++.|.+.|++|.+.|+
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            466666 7999999999999999999999986

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.016  Score=44.90  Aligned_cols=32  Identities=19%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~   34 (173)
                      .||.|||+|.+|+.++++|...|. +++++|.+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            589999999999999999999997 78888764

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.57  E-value=0.022  Score=39.14  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=32.5

Q ss_pred             CCCeEEEEeCChhhHHHHHHHHHCC-----CeEEEE-cC--ChHHHHHHHHc
Q 044797            1 MASKVGFVGLDEYSVDMAASLIRSG-----YKVQAF-EI--SDPLVDKFFML   44 (173)
Q Consensus         1 m~~~IgiiG~G~mG~~ia~~l~~~g-----~~V~~~-d~--~~~~~~~~~~~   44 (173)
                      |++||||=|+|++|..+.+.+...+     .+|..+ |.  +.+.+..+.+.
T Consensus         1 M~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlky   52 (190)
T d1k3ta1           1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRY   52 (190)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHE
T ss_pred             CCeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhc
Confidence            8999999999999999999887654     355543 44  45666555553

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.56  E-value=0.036  Score=37.39  Aligned_cols=42  Identities=7%  Similarity=0.060  Sum_probs=30.1

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHC----CCeEEEEc--CChHHHHHHHH
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRS----GYKVQAFE--ISDPLVDKFFM   43 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~----g~~V~~~d--~~~~~~~~~~~   43 (173)
                      ++||||=|+|++|..+.+.+.+.    ..+|.+.+  .+++....+.+
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlk   48 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTR   48 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHH
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhc
Confidence            46999999999999999998754    35676665  34444444444

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.55  E-value=0.014  Score=40.96  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLV   38 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~   38 (173)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|+++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            56677  668999999999999999999999987643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.44  E-value=0.048  Score=38.46  Aligned_cols=36  Identities=19%  Similarity=0.174  Sum_probs=30.2

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVD   39 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~   39 (173)
                      |+.+|  |.+.+|.++++.|++.|++|.+.+|+.++.+
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            56666  5667999999999999999999999876543

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.43  E-value=0.25  Score=33.66  Aligned_cols=97  Identities=11%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             HHHHHHHHCCCeEEEEcCChH----HHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCE
Q 044797           16 DMAASLIRSGYKVQAFEISDP----LVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAV   91 (173)
Q Consensus        16 ~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~   91 (173)
                      ..++.|.+.|++|.+=.--..    .-+...+.|++..++.++++.++|+|+..-+ |... +.-   .+....+++|++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~-P~~~-e~~---~~ei~~lk~g~~   95 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQR-PMTA-EEG---TDEVALIKEGAV   95 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEEC-CCCG-GGS---CCGGGGSCTTCE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecC-Cccc-ccc---hhHhhhccCceE
Confidence            346788999999985421111    1134566799999888999999998776554 2211 111   123357899999


Q ss_pred             EEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797           92 IILQSTILPSHMQKLEKTFTGNLTFYIL  119 (173)
Q Consensus        92 ii~~st~~~~~~~~l~~~l~~~g~~~v~  119 (173)
                      ++..-  .|....++.+.+.++++..+.
T Consensus        96 li~~l--~p~~~~~~~~~l~~~~it~~a  121 (194)
T d1l7da2          96 LMCHL--GALTNRPVVEALTKRKITAYA  121 (194)
T ss_dssp             EEEEC--CGGGCHHHHHHHHHTTCEEEE
T ss_pred             EEEec--ccccchhHHHHHHhcCceEEe
Confidence            99765  354555666777777776543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.34  E-value=0.023  Score=37.32  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .||.|||.|..|.-+|..|.+ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999998864 77999998753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.25  E-value=0.025  Score=41.57  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=29.2

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      -|+.+|  |.+.+|.++|+.|++.|+.|.+.|++.+
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            367788  7788999999999999999999987643

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.25  E-value=0.024  Score=41.18  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ++|-|. |.|.+|+.+++.|++.|++|++.+|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            467777 689999999999999999999999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.23  E-value=0.024  Score=42.66  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=28.0

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEc
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFE   32 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d   32 (173)
                      |||.|. |.|.+|+.+++.|++.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            689888 689999999999999999999997

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.23  E-value=0.019  Score=41.26  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHH-CCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR-SGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~-~g~~V~~~d~~~   35 (173)
                      ..|.|||.|.-|...|..|++ .|++|.++|+.+
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            358999999999999999987 599999999875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.19  E-value=0.038  Score=39.14  Aligned_cols=34  Identities=15%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             EEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHH
Q 044797            5 VGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLV   38 (173)
Q Consensus         5 Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~   38 (173)
                      +++|  |.+.+|.++|+.|+++|++|.+.+|+.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            5677  667799999999999999999999986543

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=94.17  E-value=0.38  Score=30.82  Aligned_cols=108  Identities=12%  Similarity=-0.020  Sum_probs=64.9

Q ss_pred             CeEEEE-e--CC---hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccC-----hhh
Q 044797            3 SKVGFV-G--LD---EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISH-----VDQ   71 (173)
Q Consensus         3 ~~Igii-G--~G---~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~-----~~~   71 (173)
                      .||.|| +  .|   .|...++..|...|++|.+++.+....+.           ....+.++|.|++..|.     +..
T Consensus         3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~~   71 (152)
T d1e5da1           3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILPY   71 (152)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCHH
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCch
Confidence            466666 2  33   46777888888999999988865432221           12235679999999884     233


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeee
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFL  124 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~  124 (173)
                      +...+   +.+...-.+++.+.-.+  .........+.+.+.+.|...+..+...
T Consensus        72 ~~~~l---~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~~~~  123 (152)
T d1e5da1          72 VAGTL---QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKV  123 (152)
T ss_dssp             HHHHH---HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEE
T ss_pred             hHHHH---HHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCcEEE
Confidence            44444   12222222344432222  2234456888999998998877766443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.15  E-value=0.17  Score=34.08  Aligned_cols=85  Identities=9%  Similarity=0.070  Sum_probs=53.7

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChH----HHHHHHHcCCceecCh------------hhh----hcCCCE
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDP----LVDKFFMLGGIRSASP------------MDA----GKDVSA   61 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~~~~------------~~~----~~~~dv   61 (173)
                      ++.|+  |.|.+|....+.....|.+|++.-++++    +.+.+.+.|+...-+.            .+.    -...|+
T Consensus        31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~vdv  110 (189)
T d1gu7a2          31 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKL  110 (189)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEE
T ss_pred             EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCceE
Confidence            57777  6789999999999999999887755543    3344556675432111            111    124788


Q ss_pred             EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ++-++. .+.....+       ..++++..++..+
T Consensus       111 v~D~vg-~~~~~~~~-------~~l~~~G~~v~~G  137 (189)
T d1gu7a2         111 ALNCVG-GKSSTGIA-------RKLNNNGLMLTYG  137 (189)
T ss_dssp             EEESSC-HHHHHHHH-------HTSCTTCEEEECC
T ss_pred             EEECCC-cchhhhhh-------hhhcCCcEEEEEC
Confidence            888886 33444333       4567777777664

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.025  Score=38.79  Aligned_cols=31  Identities=13%  Similarity=-0.001  Sum_probs=28.9

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+.|||+|.-|...|..+.+.|.+|.+++++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4789999999999999999999999999875

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.11  E-value=0.025  Score=35.11  Aligned_cols=64  Identities=14%  Similarity=0.042  Sum_probs=46.8

Q ss_pred             CeEEEEeC----------ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGL----------DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~----------G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~   68 (173)
                      ++|||+|+          ..-.-.+.+.|.+.|.+|.+||+.-...+  ...+.....++.++.+.+|+|+....+
T Consensus        16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~   89 (108)
T d1dlja3          16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD   89 (108)
T ss_dssp             CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC
T ss_pred             CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc
Confidence            36888886          34566788999999999999998754321  123456778899999999987765553

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.11  E-value=0.012  Score=43.62  Aligned_cols=31  Identities=6%  Similarity=-0.022  Sum_probs=26.4

Q ss_pred             CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEc
Q 044797            2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFE   32 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d   32 (173)
                      ||||.|.| .|.+|+.+++.|++.|++|.+.+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            68999995 99999999999999998765443

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.02  E-value=0.024  Score=39.09  Aligned_cols=38  Identities=13%  Similarity=0.232  Sum_probs=31.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCChHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFEISDPLVDK   40 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~~   40 (173)
                      +||-+||.|.-|..++.+|.+.+.   +..+.|.+...+..
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~   41 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEA   41 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHT
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhc
Confidence            489999999999999999998774   56778887766553

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.079  Score=38.94  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             eEEEE-eCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      .|.|. |.|.+|+.+++.|++.|++|++.|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            35455 7899999999999999999999875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.89  E-value=0.028  Score=38.05  Aligned_cols=32  Identities=22%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+|.|||.|+.|..-|..+.+.|.++.++++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            58999999999999999999999999999854

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.88  E-value=0.021  Score=39.39  Aligned_cols=33  Identities=12%  Similarity=-0.063  Sum_probs=30.3

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      ...+.|||.|..|...|..+.+.|.+|.++++.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            356899999999999999999999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.87  E-value=0.1  Score=35.00  Aligned_cols=106  Identities=19%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cCC----ce-ecChhhh---hcCCCEEEEeccChh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----LGG----IR-SASPMDA---GKDVSALVVVISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~----~~-~~~~~~~---~~~~dvii~~v~~~~   70 (173)
                      .+|.=+|||.=..++.  +++.+.+|+.+|.+++.++.+++    .|.    +. ..+..+.   ....|.|++..+ ..
T Consensus        35 ~~VLDiGcGsG~~s~~--lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~-~~  111 (186)
T d1l3ia_          35 DVAVDVGCGTGGVTLE--LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS-GG  111 (186)
T ss_dssp             CEEEEESCTTSHHHHH--HHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC-TT
T ss_pred             CEEEEEECCeEccccc--ccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc-cc
Confidence            3677788877544443  44556799999999998876654    343    11 2233332   246788887655 33


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT  115 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~  115 (173)
                      ..++++   +.+...++||..++-. ....+....+.+.++..+.
T Consensus       112 ~~~~~~---~~~~~~LkpgG~lvi~-~~~~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_         112 ELQEIL---RIIKDKLKPGGRIIVT-AILLETKFEAMECLRDLGF  152 (186)
T ss_dssp             CHHHHH---HHHHHTEEEEEEEEEE-ECBHHHHHHHHHHHHHTTC
T ss_pred             cchHHH---HHHHHHhCcCCEEEEE-eeccccHHHHHHHHHHcCC
Confidence            455555   3566677777655422 2344555666666666543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.87  E-value=0.021  Score=37.98  Aligned_cols=32  Identities=25%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+|.|||.|..|.-+|..|.+.|.++++..+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            58999999999999999999999887665443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.84  E-value=0.044  Score=34.10  Aligned_cols=33  Identities=21%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHH---CCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR---SGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~---~g~~V~~~d~~~   35 (173)
                      .++.|||.|.+|.-+|..|.+   .|.+|+++.+.+
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            689999999999999976654   488999998764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.78  E-value=0.058  Score=37.81  Aligned_cols=89  Identities=13%  Similarity=0.134  Sum_probs=55.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cC--Cce-ecChhhh--hcCCCEEEEe------cc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----LG--GIR-SASPMDA--GKDVSALVVV------IS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g--~~~-~~~~~~~--~~~~dvii~~------v~   67 (173)
                      .+|.=||||.  ..++..|++.|.+|+++|.+++.++.+.+    .+  ++. ..+..+.  -+..|+|++.      ++
T Consensus        39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~  116 (246)
T d1y8ca_          39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred             CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccC
Confidence            4688899984  23666788889999999999987765543    23  222 2233332  2345888763      23


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCE-EEEcC
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAV-IILQS   96 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~-ii~~s   96 (173)
                      ++.+...++   +.+...|+||.. +++..
T Consensus       117 ~~~~~~~~l---~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         117 DSDDLKKYF---KAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             SHHHHHHHH---HHHHTTEEEEEEEEEEEE
T ss_pred             CHHHHHHHH---HHHHHhCCCCeEEEEEeC
Confidence            444555565   467778888655 44553

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.74  E-value=0.035  Score=38.66  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=31.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCChHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFEISDPLVDK   40 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~~   40 (173)
                      .||.|||+|.-|..++.+|.+.|.   +..++|.+...+..
T Consensus        16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~   56 (209)
T d2vapa1          16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIR   56 (209)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHT
T ss_pred             CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhc
Confidence            589999999999999999998774   55777887766654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.034  Score=38.30  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=29.5

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|.-|...|..+.+.|.+|.++++.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48899999999999999999999999999754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.65  E-value=0.0093  Score=36.93  Aligned_cols=31  Identities=16%  Similarity=0.042  Sum_probs=25.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      ++|.|||.|+-|.-++..|.+...+++...|
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            6899999999999999999887766544433

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.61  E-value=0.1  Score=37.51  Aligned_cols=102  Identities=12%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             CeEEEEeC--ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc------C----Cc-eecChhhh---hcCCCEEEEec
Q 044797            3 SKVGFVGL--DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML------G----GI-RSASPMDA---GKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~--G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~------g----~~-~~~~~~~~---~~~~dvii~~v   66 (173)
                      ++|.=+||  |.+...+|+.+...| +|+.+|.+++.++.+++.      +    +. ...+..+.   -...|.|++-+
T Consensus        98 ~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ldl  176 (264)
T d1i9ga_          98 ARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM  176 (264)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred             CEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEec
Confidence            45666654  566666777766665 799999999988765541      1    11 11222221   13479999999


Q ss_pred             cChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797           67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG  112 (173)
Q Consensus        67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~  112 (173)
                      |+|...   +   +.+...|+||..++..+. ..+..++..+.+++
T Consensus       177 p~P~~~---l---~~~~~~LkpGG~lv~~~P-~i~Qv~~~~~~l~~  215 (264)
T d1i9ga_         177 LAPWEV---L---DAVSRLLVAGGVLMVYVA-TVTQLSRIVEALRA  215 (264)
T ss_dssp             SCGGGG---H---HHHHHHEEEEEEEEEEES-SHHHHHHHHHHHHH
T ss_pred             CCHHHH---H---HHHHhccCCCCEEEEEeC-ccChHHHHHHHHHH
Confidence            987643   2   234567788887765544 34456667777753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.60  E-value=0.046  Score=35.70  Aligned_cols=28  Identities=14%  Similarity=0.029  Sum_probs=25.9

Q ss_pred             eCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            9 GLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         9 G~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |.|.+|.-+|..|++.|.+|++.++.+.
T Consensus        48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          48 DTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            9999999999999999999999987653

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.58  E-value=0.29  Score=34.10  Aligned_cols=87  Identities=10%  Similarity=0.104  Sum_probs=51.2

Q ss_pred             CeEEEEeCCh--hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C-Cce-------ecChhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDE--YSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G-GIR-------SASPMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~--mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~-------~~~~~~~~~~~dvii~~v~~   68 (173)
                      ++|.-+|||.  .-..+++..-.. -.|+++|.++..++.+.+.    + ...       ...........|+|+.-++.
T Consensus        75 ~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~  153 (227)
T d1g8aa_          75 KSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ  153 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred             CEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEccc
Confidence            4777886655  444455543333 4899999999988776542    1 111       11112233556778877765


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEE
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVII   93 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii   93 (173)
                      +.+.+.++   .++...|++|..++
T Consensus       154 ~~~~~~~l---~~~~~~LkpgG~lv  175 (227)
T d1g8aa_         154 PTQAKILI---DNAEVYLKRGGYGM  175 (227)
T ss_dssp             TTHHHHHH---HHHHHHEEEEEEEE
T ss_pred             cchHHHHH---HHHHHhcccCCeEE
Confidence            55555555   34556777776554

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.52  E-value=0.17  Score=33.03  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CeEEEEeC---ChhhHHHHHHHHHCCCeEEEEcCC-----hHHHHHHHHcC--CceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGL---DEYSVDMAASLIRSGYKVQAFEIS-----DPLVDKFFMLG--GIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~---G~mG~~ia~~l~~~g~~V~~~d~~-----~~~~~~~~~~g--~~~~~~~~~~~~~~dvii~~v   66 (173)
                      .||++||=   +++..+++..+...|.+++++.+.     ++..+.+.+.+  +..++++.++++++|+|..-.
T Consensus         5 l~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           5 LKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             EEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            48999997   688999999999999999888653     23333444443  346788999999999877754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.49  E-value=0.041  Score=34.31  Aligned_cols=33  Identities=21%  Similarity=0.074  Sum_probs=26.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHH---CCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR---SGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~---~g~~V~~~d~~~   35 (173)
                      .++.|||.|.+|.-+|..|.+   .|.+|+++++.+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            589999999999999966554   456899998754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.033  Score=37.48  Aligned_cols=32  Identities=16%  Similarity=0.033  Sum_probs=29.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+|.|||.|+.|..-|..+.+.|.+|+++++.
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            47999999999999999999999999999865

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.45  E-value=0.036  Score=37.96  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=29.4

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .+.|||.|.-|...|..+.+.|.+|.++++++
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            47899999999999999999999999998753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.43  E-value=0.088  Score=36.71  Aligned_cols=89  Identities=12%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C--Cce-ecChhhh--hcCCCEEEEec-----cC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G--GIR-SASPMDA--GKDVSALVVVI-----SH   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~-~~~~~~~--~~~~dvii~~v-----~~   68 (173)
                      .+|.=||||. | .++..|++.|.+|++.|.+++-++.+++.    +  +.. ..+..++  -+..|+|++.-     .+
T Consensus        43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~  120 (251)
T d1wzna1          43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD  120 (251)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSC
T ss_pred             CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcCC
Confidence            3688899997 4 34557888999999999999888765542    3  222 2223322  12457777642     22


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEE-EEcC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVI-ILQS   96 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~i-i~~s   96 (173)
                      ..+....+   +++...|+||.++ ++..
T Consensus       121 ~~~~~~~L---~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         121 EEDLRKLF---SKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             HHHHHHHH---HHHHHHEEEEEEEEEEEE
T ss_pred             hHHHHHHH---HHHHHHcCCCcEEEEEec
Confidence            23344555   4566778777544 5543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.031  Score=39.05  Aligned_cols=40  Identities=23%  Similarity=0.173  Sum_probs=33.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML   44 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~   44 (173)
                      .||-.+|||. | ..+..|++.|++|+++|.+++.++.+.+.
T Consensus        47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~   86 (229)
T d2bzga1          47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTE   86 (229)
T ss_dssp             CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence            4788999998 3 56778899999999999999999877653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.17  E-value=0.052  Score=37.57  Aligned_cols=32  Identities=22%  Similarity=0.113  Sum_probs=29.6

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|.-|...|..+.+.|.+|.++++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47899999999999999999999999998764

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.12  E-value=0.21  Score=37.10  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=27.0

Q ss_pred             CeEEEE-eCChhhHHHHHHHHH-CCCeEEEEcC
Q 044797            3 SKVGFV-GLDEYSVDMAASLIR-SGYKVQAFEI   33 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~-~g~~V~~~d~   33 (173)
                      |||-|. |+|.+|+.+++.|++ .|++|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            599887 789999999999975 7899999874

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.10  E-value=0.07  Score=35.02  Aligned_cols=61  Identities=16%  Similarity=-0.034  Sum_probs=46.2

Q ss_pred             CeEEEEeC---ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEec
Q 044797            3 SKVGFVGL---DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus         3 ~~IgiiG~---G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      .||+++|=   +++..+++..+.+.|.++.+..+..=..+   +.......+.+++++++|+|..-.
T Consensus         4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeE
Confidence            48999985   68999999999999999887776532111   223456778899999999887653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.03  E-value=0.063  Score=38.64  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             eEEEE-eCC---hhhHHHHHHHHHCCCeEEEEcCChHHH
Q 044797            4 KVGFV-GLD---EYSVDMAASLIRSGYKVQAFEISDPLV   38 (173)
Q Consensus         4 ~Igii-G~G---~mG~~ia~~l~~~g~~V~~~d~~~~~~   38 (173)
                      |+++| |++   -+|.++|+.|++.|.+|.+.+|+++..
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~   47 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALN   47 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhh
Confidence            45555 875   599999999999999999999876543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.91  E-value=0.048  Score=37.25  Aligned_cols=32  Identities=22%  Similarity=0.106  Sum_probs=29.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      ..+.|||.|..|...|..+.+.|.+|.++++.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            46889999999999999999999999999875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.83  E-value=0.06  Score=38.87  Aligned_cols=32  Identities=31%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|..|...|..++++|.+|.++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58899999999999999999999999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.79  E-value=0.055  Score=38.51  Aligned_cols=37  Identities=14%  Similarity=0.029  Sum_probs=28.0

Q ss_pred             eEEEE--eCChhhHHHHHHHHHCCCeEEEEcCChHHHHH
Q 044797            4 KVGFV--GLDEYSVDMAASLIRSGYKVQAFEISDPLVDK   40 (173)
Q Consensus         4 ~Igii--G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~   40 (173)
                      |+.+|  |.+.+|..+|+.|++.|.+|++..|+.++.+.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~   44 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA   44 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence            55566  56679999999999999998777665544433

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.78  E-value=0.22  Score=34.71  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=56.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC--------hHHH----HHHHHc--CCceecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS--------DPLV----DKFFML--GGIRSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~--------~~~~----~~~~~~--g~~~~~~~~~~~~~~dvii~~v~   67 (173)
                      .||.|.|+|.-|..+++.+.+.+. +++.+|+.        ....    ..+.+.  ......+..+++..+++++....
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~~  106 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR  106 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceeccccc
Confidence            489999999999999999988774 68888875        1111    111111  12334567788888987766654


Q ss_pred             ChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797           68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPS  101 (173)
Q Consensus        68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~  101 (173)
                      .....++.+       ..+.+.-+|.-.|+-+++
T Consensus       107 ~~~~~~e~m-------~~~~~rPIIFpLSNPt~~  133 (222)
T d1vl6a1         107 GNILKPEWI-------KKMSRKPVIFALANPVPE  133 (222)
T ss_dssp             SSCSCHHHH-------TTSCSSCEEEECCSSSCS
T ss_pred             cccccHHHH-------hhcCCCCEEEecCCCccc
Confidence            222112222       334556677777664443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.73  E-value=0.15  Score=34.35  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cCCc----eecChhhh-h-cCCCEEEEecc----C
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----LGGI----RSASPMDA-G-KDVSALVVVIS----H   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~----~~~~~~~~-~-~~~dvii~~v~----~   68 (173)
                      .+|.-|||| .|. .+..|++.|++|+++|.+++.++.+.+    .++.    ...+..+. . ..-|+|+....    +
T Consensus        32 grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~~  109 (198)
T d2i6ga1          32 GRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLE  109 (198)
T ss_dssp             CEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGSC
T ss_pred             CcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecCC
Confidence            378889999 444 556788899999999999988875443    2332    11222221 1 23477775432    1


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEE
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVII   93 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii   93 (173)
                      +......+   .++...+++|..++
T Consensus       110 ~~~~~~~l---~~~~~~L~pgG~~~  131 (198)
T d2i6ga1         110 AQTIPGLI---ANMQRCTKPGGYNL  131 (198)
T ss_dssp             TTHHHHHH---HHHHHTEEEEEEEE
T ss_pred             HHHHHHHH---HHHHHHcCCCcEEE
Confidence            22334454   34556677766544

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.086  Score=35.55  Aligned_cols=85  Identities=12%  Similarity=-0.002  Sum_probs=53.5

Q ss_pred             eEEEEe-CChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHH-HcCCcee-----cChhhhhc-----CCCEEEEeccChh
Q 044797            4 KVGFVG-LDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFF-MLGGIRS-----ASPMDAGK-----DVSALVVVISHVD   70 (173)
Q Consensus         4 ~IgiiG-~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~-~~g~~~~-----~~~~~~~~-----~~dvii~~v~~~~   70 (173)
                      +|.|.| +|.+|+..++.....|.+ |.....++++...+. +.|....     .+..+.++     .+|+|+-++. ..
T Consensus        33 tVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g~  111 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-GD  111 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-HH
T ss_pred             EEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-ch
Confidence            366666 699999999999999975 555677777666554 4564321     12232222     4888888886 34


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQS   96 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~s   96 (173)
                      ..+..+       ..++++-.++.++
T Consensus       112 ~~~~~~-------~~l~~~G~iv~~G  130 (187)
T d1vj1a2         112 ISNTVI-------SQMNENSHIILCG  130 (187)
T ss_dssp             HHHHHH-------TTEEEEEEEEEC-
T ss_pred             hHHHHh-------hhccccccEEEec
Confidence            444443       4556666666654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.075  Score=35.16  Aligned_cols=31  Identities=19%  Similarity=0.123  Sum_probs=28.5

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .|.|||.|+.|...|..+.+.|.+|.++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            5789999999999999999999999999864

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.66  E-value=0.28  Score=32.28  Aligned_cols=95  Identities=14%  Similarity=0.078  Sum_probs=59.4

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCC-----hHHHHHHHHc------CCceecChhhhhcCCCEEEEecc---
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEIS-----DPLVDKFFML------GGIRSASPMDAGKDVSALVVVIS---   67 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~-----~~~~~~~~~~------g~~~~~~~~~~~~~~dvii~~v~---   67 (173)
                      .||+++|- .++..+++..+...|.+++++.+.     ++-.+.+.+.      ....+.++.++++++|+|..-.-   
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~~~~   84 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASM   84 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecceeec
Confidence            48999985 357778888888899999988653     2222322221      24567889999999998886431   


Q ss_pred             ---Ch-hhhhhhh---cCccchhhcCCCCCEEEEcCC
Q 044797           68 ---HV-DQIDDIF---FGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        68 ---~~-~~~~~v~---~~~~~i~~~l~~g~~ii~~st   97 (173)
                         +. ..-...+   .-..+..+..+++.+|+.+..
T Consensus        85 ~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP  121 (163)
T d1pvva2          85 GQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP  121 (163)
T ss_dssp             STTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSC
T ss_pred             ccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCc
Confidence               00 0101111   001245566788889998865

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.46  E-value=0.082  Score=35.44  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEc-C--ChHHHHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFE-I--SDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d-~--~~~~~~~~~~   43 (173)
                      .||||=|+|++|..+.+.+.+.+.++...+ +  +.+.+..+.+
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlk   44 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFK   44 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHh
Confidence            489999999999999999998898887775 3  3455555544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.44  E-value=0.068  Score=36.93  Aligned_cols=32  Identities=13%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|.-|...|..+++.|.+|.++++.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47899999999999999999999999999643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=92.43  E-value=0.064  Score=37.09  Aligned_cols=89  Identities=15%  Similarity=0.209  Sum_probs=53.0

Q ss_pred             CeEEEEeC--ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CC--ce---ecChhhh-hcCCCEEEEecc---
Q 044797            3 SKVGFVGL--DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GG--IR---SASPMDA-GKDVSALVVVIS---   67 (173)
Q Consensus         3 ~~IgiiG~--G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~--~~---~~~~~~~-~~~~dvii~~v~---   67 (173)
                      .+|.-+||  |.+...+++.+...+.+|++.|.+++-++.+++.    +.  ..   ..+..+. ..+.|+++...-   
T Consensus        41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~  120 (225)
T d1im8a_          41 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQF  120 (225)
T ss_dssp             CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGG
T ss_pred             CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccc
Confidence            36888898  5555556665555788999999999988776542    21  11   1122221 234566655421   


Q ss_pred             -ChhhhhhhhcCccchhhcCCCCCEEEE
Q 044797           68 -HVDQIDDIFFGHEGVLKGLQKGAVIIL   94 (173)
Q Consensus        68 -~~~~~~~v~~~~~~i~~~l~~g~~ii~   94 (173)
                       ++.+...++   +++...|+||..++-
T Consensus       121 ~~~~d~~~~l---~~i~~~LkpgG~li~  145 (225)
T d1im8a_         121 LPPEDRIALL---TKIYEGLNPNGVLVL  145 (225)
T ss_dssp             SCGGGHHHHH---HHHHHHEEEEEEEEE
T ss_pred             cChhhHHHHH---HHHHHhCCCCceeec
Confidence             123334555   467788888876653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.43  E-value=0.12  Score=35.07  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cCC--c-eecChhhhh---cCCCEEEEecc----C
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----LGG--I-RSASPMDAG---KDVSALVVVIS----H   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~--~-~~~~~~~~~---~~~dvii~~v~----~   68 (173)
                      .||.=||||.=.  ++..|.+.|.+|+++|.+++.++.+++    .+.  . ...+..+.-   ..-|+|+..-.    +
T Consensus        39 ~~ILDiGcG~G~--~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~  116 (226)
T d1ve3a1          39 GKVLDLACGVGG--FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE  116 (226)
T ss_dssp             CEEEEETCTTSH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CEEEEECCCcch--hhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence            368889999833  556778889999999999988866543    222  1 122222221   23577776532    1


Q ss_pred             hhhhhhhhcCccchhhcCCCCCE-EEEcC
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAV-IILQS   96 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~-ii~~s   96 (173)
                      +.+....+   .++...|+||.. ++...
T Consensus       117 ~~d~~~~l---~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         117 PLELNQVF---KEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             HHHHHHHH---HHHHHHEEEEEEEEEEEE
T ss_pred             hhHHHHHH---HHHHHHcCcCcEEEEEEc
Confidence            23344455   467777888764 45543

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.25  Score=33.10  Aligned_cols=96  Identities=6%  Similarity=-0.023  Sum_probs=60.2

Q ss_pred             CeEEEEeCC--hhhHHHHHHHHHCCCeEEEEcCC-----hHHHHHH----HHcC--CceecChhhhhcCCCEEEEeccC-
Q 044797            3 SKVGFVGLD--EYSVDMAASLIRSGYKVQAFEIS-----DPLVDKF----FMLG--GIRSASPMDAGKDVSALVVVISH-   68 (173)
Q Consensus         3 ~~IgiiG~G--~mG~~ia~~l~~~g~~V~~~d~~-----~~~~~~~----~~~g--~~~~~~~~~~~~~~dvii~~v~~-   68 (173)
                      .||+++|=|  ++..+++..+...|.+++++-+.     ++-.+.+    ...|  ...+++.+++++++|+|..-+-. 
T Consensus         6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~s   85 (183)
T d1duvg2           6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVS   85 (183)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSC
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEehhh
Confidence            489999944  79999999999999999988653     1211222    2223  34678899999999998875421 


Q ss_pred             ----hh-hhhh--hhc----CccchhhcCCCCCEEEEcCCC
Q 044797           69 ----VD-QIDD--IFF----GHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        69 ----~~-~~~~--v~~----~~~~i~~~l~~g~~ii~~st~   98 (173)
                          .. ....  ...    ....+....+++.+|+.+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~LPa  126 (183)
T d1duvg2          86 MGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA  126 (183)
T ss_dssp             TTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             hhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccCcc
Confidence                00 0010  010    011233445678889998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.31  E-value=0.055  Score=37.87  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPL   37 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~   37 (173)
                      .||-|. |.+.+|.++++.|++.|++|.+.||+++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            477566 67899999999999999999999998653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.28  E-value=0.058  Score=38.05  Aligned_cols=41  Identities=5%  Similarity=0.043  Sum_probs=32.4

Q ss_pred             CCeEEEEe-CChhhHHHHHHHH---HCCCeEEEEcCChHHHHHHH
Q 044797            2 ASKVGFVG-LDEYSVDMAASLI---RSGYKVQAFEISDPLVDKFF   42 (173)
Q Consensus         2 ~~~IgiiG-~G~mG~~ia~~l~---~~g~~V~~~d~~~~~~~~~~   42 (173)
                      |++|-|.| ...+|.++|+.|+   +.|++|++.+|++++.+.+.
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   46 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            45676665 5889999999986   47899999999988776554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.19  Score=37.07  Aligned_cols=108  Identities=13%  Similarity=0.007  Sum_probs=60.5

Q ss_pred             CeEEEEeCCh--hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C--------------Cce-ecChhhh-----h
Q 044797            3 SKVGFVGLDE--YSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G--------------GIR-SASPMDA-----G   56 (173)
Q Consensus         3 ~~IgiiG~G~--mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g--------------~~~-~~~~~~~-----~   56 (173)
                      ++|.=+|+|.  +...+|+.+...| .|+.+|++++.++.+++.    +              +.. ..+..+.     -
T Consensus       100 ~rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~  178 (324)
T d2b25a1         100 DTVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS  178 (324)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CEEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCC
Confidence            4566666554  5555565555454 899999999887665431    0              111 1111111     1


Q ss_pred             cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      ...|.||+=+|+|..   ++   +.+...|+||..++.-+.. .....++.+.++..+..|.
T Consensus       179 ~~fD~V~LD~p~P~~---~l---~~~~~~LKpGG~lv~~~P~-i~Qv~~~~~~l~~~~~~f~  233 (324)
T d2b25a1         179 LTFDAVALDMLNPHV---TL---PVFYPHLKHGGVCAVYVVN-ITQVIELLDGIRTCELALS  233 (324)
T ss_dssp             --EEEEEECSSSTTT---TH---HHHGGGEEEEEEEEEEESS-HHHHHHHHHHHHHHTCCEE
T ss_pred             CCcceEeecCcCHHH---HH---HHHHHhccCCCEEEEEeCC-HHHHHHHHHHHHHcCCCce
Confidence            246889988887643   22   3455678888777654432 3455667777765544443

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.10  E-value=0.19  Score=32.77  Aligned_cols=95  Identities=13%  Similarity=0.050  Sum_probs=58.2

Q ss_pred             CeEEEEeC---ChhhHHHHHHHHHCCCeEEEEcCChH---HHHHHHHc--CCceecChhhhhcCCCEEEEecc------C
Q 044797            3 SKVGFVGL---DEYSVDMAASLIRSGYKVQAFEISDP---LVDKFFML--GGIRSASPMDAGKDVSALVVVIS------H   68 (173)
Q Consensus         3 ~~IgiiG~---G~mG~~ia~~l~~~g~~V~~~d~~~~---~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~------~   68 (173)
                      .||++||=   +++..+++..+.+.|.++..+-+.+.   ..+.....  .+...+++.++++++|+|.....      +
T Consensus         4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~~~~   83 (153)
T d1pg5a2           4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVD   83 (153)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSC
T ss_pred             CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehhccc
Confidence            48999985   55899999999999998765433211   11122222  35567889999999998876421      1


Q ss_pred             hhhhhhhh---cCccchhhcCCCCCEEEEcCC
Q 044797           69 VDQIDDIF---FGHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        69 ~~~~~~v~---~~~~~i~~~l~~g~~ii~~st   97 (173)
                      ....+...   .-..++....+++.+|+.+..
T Consensus        84 ~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LP  115 (153)
T d1pg5a2          84 EMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  115 (153)
T ss_dssp             HHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             hhHHHHHHHhhhhhHHHHhccCCCeEEecCCC
Confidence            11111111   001244556678888888765

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.02  E-value=0.072  Score=36.31  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=27.6

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCCh
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~   35 (173)
                      .+||.|.|. |.+|+.+++.|.+.|+  +|....|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            478999976 9999999999999997  555555553

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.93  E-value=0.071  Score=37.77  Aligned_cols=35  Identities=17%  Similarity=-0.019  Sum_probs=29.7

Q ss_pred             eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            9 GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         9 G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      |.+.+|.++|+.|++.|++|.+.+|+.++.+++.+
T Consensus         8 as~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           8 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA   42 (252)
T ss_dssp             TTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence            44559999999999999999999999887776544

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.82  E-value=0.066  Score=40.39  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=29.8

Q ss_pred             eEEEEeCChhhHHHHHHHHH------CCCeEEEEcCChH
Q 044797            4 KVGFVGLDEYSVDMAASLIR------SGYKVQAFEISDP   36 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~------~g~~V~~~d~~~~   36 (173)
                      .|.|||.|.-|+..|..|++      .|++|.++++...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            68999999999999999986      8999999998753

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.063  Score=38.76  Aligned_cols=32  Identities=9%  Similarity=-0.007  Sum_probs=28.2

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      +||.|. |.|.+|+.+++.|++.|+.+.+.+..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            689888 79999999999999999998877654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.80  E-value=0.072  Score=38.74  Aligned_cols=33  Identities=27%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHH--CCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIR--SGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~--~g~~V~~~d~~~   35 (173)
                      .+|.|||+|.-|..-|..|.+  .|++|.++++++
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            369999999999999999985  499999999875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.79  E-value=0.087  Score=38.32  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=30.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ..|.|||.|.-|...|..++++|.+|.+.++.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            358999999999999999999999999999864

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.70  E-value=0.047  Score=38.78  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=25.5

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcC
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      |||.|.| .|.+|+++.+.|.+.|+.|.+..+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECC
Confidence            5899996 599999999999999976655443

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.63  E-value=0.15  Score=37.54  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CeEEEE-eCC---hhhHHHHHHHHHCCCeEEEEcCChHHH
Q 044797            3 SKVGFV-GLD---EYSVDMAASLIRSGYKVQAFEISDPLV   38 (173)
Q Consensus         3 ~~Igii-G~G---~mG~~ia~~l~~~g~~V~~~d~~~~~~   38 (173)
                      .||++| |.|   .+|.++|+.|++.|.+|.+.++++...
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~   41 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYN   41 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhh
Confidence            478888 866   699999999999999999888776543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.11  Score=35.44  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=28.6

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+.|||.|..|...|..+.+.|.+|.+.++.
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4789999999999999999999999999875

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.50  E-value=0.098  Score=38.33  Aligned_cols=30  Identities=37%  Similarity=0.574  Sum_probs=28.3

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      .+.|||.|.-|..+|.+|.++|++|.+.++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            588999999999999999999999999985

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=91.48  E-value=0.1  Score=36.04  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=52.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc--eecChhhh-h--cCCCEEEEeccChh---hhhh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI--RSASPMDA-G--KDVSALVVVISHVD---QIDD   74 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~-~--~~~dvii~~v~~~~---~~~~   74 (173)
                      .+|.=+|||.  ...+..|.+.|++|+++|.++..++.+.+.+..  ...+..++ .  ..-|+|+..-.--.   +.+.
T Consensus        44 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~  121 (246)
T d2avna1          44 CRVLDLGGGT--GKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK  121 (246)
T ss_dssp             CEEEEETCTT--CHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred             CEEEEECCCC--chhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHHH
Confidence            4788899983  344557788899999999999999888775432  22222232 1  23577775421001   1223


Q ss_pred             hhcCccchhhcCCCCCEEEE
Q 044797           75 IFFGHEGVLKGLQKGAVIIL   94 (173)
Q Consensus        75 v~~~~~~i~~~l~~g~~ii~   94 (173)
                      ++   +++...|+||.+++-
T Consensus       122 ~l---~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         122 AF---SEIRRVLVPDGLLIA  138 (246)
T ss_dssp             HH---HHHHHHEEEEEEEEE
T ss_pred             HH---HHHHhhcCcCcEEEE
Confidence            33   356667888776653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.13  Score=32.75  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=27.1

Q ss_pred             CeEEEEeCChhhHHHHHHHH----HCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLI----RSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~----~~g~~V~~~d~~~   35 (173)
                      .++.|||.|..|.-+|..|.    ..|.+|++.++++
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            57999999999988887774    4688999887654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.14  E-value=0.72  Score=31.99  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             CeEEEEeCCh--hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C-Cce----ecC---hhhhhcCCCEEEEeccC
Q 044797            3 SKVGFVGLDE--YSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G-GIR----SAS---PMDAGKDVSALVVVISH   68 (173)
Q Consensus         3 ~~IgiiG~G~--mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~----~~~---~~~~~~~~dvii~~v~~   68 (173)
                      ++|.-+|||.  ....+++. ... -.|++.|.++..++.+.+.    + ...    ...   ..+.....|+++..+..
T Consensus        76 ~~VLDlGcGsG~~~~~la~~-~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~  153 (230)
T d1g8sa_          76 SKILYLGASAGTTPSHVADI-ADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQ  153 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHH-TTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred             CEEEEeCEEcCHHHHHHHHh-CCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccc
Confidence            5788887765  34445543 223 4899999999988776653    1 111    111   12222334445444544


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEEEc-------CCCCHHH-HHHHHHHHhcCCceee
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVIILQ-------STILPSH-MQKLEKTFTGNLTFYI  118 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~-------st~~~~~-~~~l~~~l~~~g~~~v  118 (173)
                      ..+.+.++   .++...|+||..++.+       ++..|.. .++..+.+++.|...+
T Consensus       154 ~~~~~~~l---~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv  208 (230)
T d1g8sa_         154 PNQAEILI---KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV  208 (230)
T ss_dssp             TTHHHHHH---HHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred             hHHHHHHH---HHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            44444444   3455567776654432       2333333 2444455555565443

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.12  E-value=0.11  Score=38.22  Aligned_cols=30  Identities=17%  Similarity=0.111  Sum_probs=28.0

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      .|-|||.|.-|..+|.+|.++|++|.+.++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            467999999999999999999999999987

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.92  E-value=0.28  Score=29.14  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |||.+||.|.=-++++..|.+...+++++--|+.
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~G   34 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAG   34 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCcc
Confidence            6999999999999999999999999988855543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.84  E-value=0.14  Score=36.09  Aligned_cols=31  Identities=23%  Similarity=0.129  Sum_probs=28.9

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+.|||.|.-|...|..+++.|.+|.+++++
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4789999999999999999999999999975

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=90.73  E-value=0.091  Score=34.88  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      .||..+|||.=-  .+..|+++|++|+++|.+++.++.+++
T Consensus        22 ~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          22 ARVLVPLCGKSQ--DMSWLSGQGYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             CEEEETTTCCSH--HHHHHHHHCCEEEEEEECHHHHHHHHH
T ss_pred             CEEEEecCcCCH--HHHHHHHcCCceEeecccHHHHHHHHH
Confidence            478899999743  556888899999999999999887765

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.73  E-value=0.86  Score=30.83  Aligned_cols=89  Identities=15%  Similarity=0.042  Sum_probs=55.9

Q ss_pred             HHHHHHHCCCeEEEEcCChHH----HHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEE
Q 044797           17 MAASLIRSGYKVQAFEISDPL----VDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVI   92 (173)
Q Consensus        17 ia~~l~~~g~~V~~~d~~~~~----~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~i   92 (173)
                      .++.|.+.|++|.+=.--...    -+...+.|++..++.+++. ++|+|+-.-| |.. ++        ...+++|+++
T Consensus        22 ~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~-p~~-~e--------~~~lk~~~~l   90 (193)
T d1pjca2          22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKE-PLP-AE--------YDLMQKDQLL   90 (193)
T ss_dssp             HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSC-CCG-GG--------GGGCCTTCEE
T ss_pred             HHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEecc-CCH-HH--------HHhhhcCceE
Confidence            467788999999854211111    1334556888888877776 5797764443 322 22        2467899999


Q ss_pred             EEcCCCCHHHHHHHHHHHhcCCceee
Q 044797           93 ILQSTILPSHMQKLEKTFTGNLTFYI  118 (173)
Q Consensus        93 i~~st~~~~~~~~l~~~l~~~g~~~v  118 (173)
                      +....  |....++.+.+.++++..+
T Consensus        91 i~~l~--p~~~~ell~~l~~~~it~~  114 (193)
T d1pjca2          91 FTYLH--LAAARELTEQLMRVGLTAI  114 (193)
T ss_dssp             EECCC--GGGCHHHHHHHHHHTCEEE
T ss_pred             EEecC--cccchHHHHHHHHcCCEEE
Confidence            87753  4444566666767777654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.49  E-value=0.13  Score=34.86  Aligned_cols=32  Identities=19%  Similarity=0.075  Sum_probs=29.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .+.|||.|.-|..-|..+.+.|.+|.++++.+
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            47899999999999999999999999998753

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.37  E-value=0.12  Score=38.31  Aligned_cols=31  Identities=10%  Similarity=0.113  Sum_probs=26.0

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeE-EEEcC
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKV-QAFEI   33 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V-~~~d~   33 (173)
                      |||.|. |+|.+|+.+++.|++.|+++ ...|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            589888 78999999999999999975 45554

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.27  E-value=0.14  Score=34.25  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=24.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC---CeEEEEc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG---YKVQAFE   32 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~d   32 (173)
                      +||||=|+|++|..+.+.+....   .+|.+.|
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            59999999999999999887544   4666654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=90.15  E-value=0.043  Score=40.01  Aligned_cols=26  Identities=12%  Similarity=0.158  Sum_probs=23.0

Q ss_pred             CeEEEE-eCChhhHHHHHHHHHCCCeE
Q 044797            3 SKVGFV-GLDEYSVDMAASLIRSGYKV   28 (173)
Q Consensus         3 ~~Igii-G~G~mG~~ia~~l~~~g~~V   28 (173)
                      |||.|. |.|.+|+.+++.|++.|++|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            589888 79999999999999999754

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.05  E-value=0.2  Score=34.26  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCChHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFEISDPLVDK   40 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~~   40 (173)
                      .+|-|||.|..|..++.++.+.+.   +..++|.+...+..
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~   42 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLM   42 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhc
Confidence            368899999999999999998874   56777877666543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.00  E-value=0.15  Score=35.55  Aligned_cols=34  Identities=9%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797            3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      ++|-|.| .+.+|.++++.|++.|++|.+.|+++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4566664 577999999999999999999988654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.89  E-value=0.18  Score=36.56  Aligned_cols=32  Identities=9%  Similarity=0.067  Sum_probs=29.3

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|.-|..-|..++++|.+|.+.++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            38899999999999999999999999998764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=89.86  E-value=0.18  Score=37.24  Aligned_cols=30  Identities=20%  Similarity=0.152  Sum_probs=27.8

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEI   33 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~   33 (173)
                      .+-|||.|.-|..+|.+|.++|++|.+.++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            467999999999999999999999999986

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.16  Score=33.80  Aligned_cols=32  Identities=16%  Similarity=0.169  Sum_probs=26.8

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC-CeEEEEcC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG-YKVQAFEI   33 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~   33 (173)
                      ++||||=|+|++|..+.+.+.+.. .+|.+.|-
T Consensus         1 tikigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             CeEEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence            469999999999999999988764 67777763

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.18  Score=31.99  Aligned_cols=107  Identities=12%  Similarity=0.108  Sum_probs=64.0

Q ss_pred             CeEEEEeCCh-----------hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEE-eccChh
Q 044797            3 SKVGFVGLDE-----------YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV-VISHVD   70 (173)
Q Consensus         3 ~~IgiiG~G~-----------mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~-~v~~~~   70 (173)
                      +||-|||.|.           .+...++.|++.|+++...|.||+..          .++.+    -+|-+.+ .+. ..
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV----------std~d----~aD~lYfePlt-~e   72 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI----------MTDPE----MADATYIEPIH-WE   72 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG----------GGCGG----GSSEEECSCCC-HH
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh----------hcChh----hcceeeeecCC-HH
Confidence            6899999874           67788899999999999999998753          22322    2454444 443 55


Q ss_pred             hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797           71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYL  135 (173)
Q Consensus        71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~  135 (173)
                      .+.+++.       .-+|+.++...+   -.+.-.+...|.+.|+. -...+-++|.+.+..+.+
T Consensus        73 ~v~~Ii~-------~E~pd~il~~~G---GQtalnla~~L~~~giL-~~~~v~iLGt~~~sId~a  126 (127)
T d1a9xa3          73 VVRKIIE-------KERPDAVLPTMG---GQTALNCALELERQGVL-EEFGVTMIGATADAIDKA  126 (127)
T ss_dssp             HHHHHHH-------HHCCSEEECSSS---HHHHHHHHHHHHHTTHH-HHHTCEECSSCHHHHHHH
T ss_pred             HHHHHHH-------HhCcCCeEEEee---eehHhHHHHHHHHcCcH-HhcCCeEECCCHHHHHHh
Confidence            6666662       234555555443   34445555655544320 011133566666665554

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=89.25  E-value=1.7  Score=27.58  Aligned_cols=93  Identities=11%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccC--------hhhhhhhhcCccchh
Q 044797           12 EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISH--------VDQIDDIFFGHEGVL   83 (173)
Q Consensus        12 ~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~--------~~~~~~v~~~~~~i~   83 (173)
                      .++..+++.|.+.|++|.+++.+.-              +..+..++.|.||+.+|.        +..+...+   +.+.
T Consensus        16 ~~A~~i~~~l~~~g~~v~~~~~~~~--------------~~~~~~~~~~~vii~~sT~g~g~~~~~~~~~~f~---~~l~   78 (147)
T d1f4pa_          16 YTAETIARELADAGYEVDSRDAASV--------------EAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLF---DSLE   78 (147)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEGGGC--------------CSTTTTTTCSEEEEEECEECSSSCEECTTTHHHH---HTGG
T ss_pred             HHHHHHHHHHHHCCCeEEEEecccc--------------chhhhhcccCeEEEEecccCCcCCChhhhHHHhh---hccc
Confidence            3566777778888888888875421              223445678888876653        22344444   2233


Q ss_pred             hcCCCCCEEEEcC---CCC---HHHHHHHHHHHhcCCceeeece
Q 044797           84 KGLQKGAVIILQS---TIL---PSHMQKLEKTFTGNLTFYILER  121 (173)
Q Consensus        84 ~~l~~g~~ii~~s---t~~---~~~~~~l~~~l~~~g~~~v~~~  121 (173)
                      ..-.++..+.-.+   +..   -...+.+.+++++.|...+..+
T Consensus        79 ~~~l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa~~v~~~  122 (147)
T d1f4pa_          79 ETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDG  122 (147)
T ss_dssp             GSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCC
T ss_pred             cccccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCCEEeeCC
Confidence            2223454432221   111   1446788888988888777654

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.21  E-value=0.54  Score=29.91  Aligned_cols=107  Identities=12%  Similarity=0.085  Sum_probs=59.2

Q ss_pred             CeEEEE-e--CC---hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccCh-----hh
Q 044797            3 SKVGFV-G--LD---EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHV-----DQ   71 (173)
Q Consensus         3 ~~Igii-G--~G---~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~-----~~   71 (173)
                      .||.|+ |  .|   .|+..+++.|.+.|+++.+++.+.....        ......+-+.++|.+++..|.-     +.
T Consensus         4 ~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~--------~~~~~~~~l~~~d~iiigspt~~~~~~~~   75 (148)
T d1vmea1           4 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP--------AISEILKDIPDSEALIFGVSTYEAEIHPL   75 (148)
T ss_dssp             TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC--------CHHHHHHHSTTCSEEEEEECEETTEECHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEeccccccc--------chhHhhhhHHHCCEeEEEecccCCccCch
Confidence            356665 3  33   4677888888899999988875432100        0011123367899999998721     23


Q ss_pred             hhhhhcCccchhhcCCCCCEEEEcCC--CCHHHHHHHHHHHhcCCceeeec
Q 044797           72 IDDIFFGHEGVLKGLQKGAVIILQST--ILPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        72 ~~~v~~~~~~i~~~l~~g~~ii~~st--~~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                      +...+   ..+...-.+++.+.-.++  ......+.+.+.+...|...+..
T Consensus        76 ~~~~l---~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~~  123 (148)
T d1vmea1          76 MRFTL---LEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF  123 (148)
T ss_dssp             HHHHH---HHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEEE
T ss_pred             HHHHH---HHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEee
Confidence            33443   223332234544332222  12234577888888888876644

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=89.09  E-value=0.25  Score=29.65  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=29.1

Q ss_pred             CCCeEEEEeCCh---------hhHHHHHHHHHCCCeEEEEcCChH
Q 044797            1 MASKVGFVGLDE---------YSVDMAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         1 m~~~IgiiG~G~---------mG~~ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |++||+|+-.|.         -|..+.+.|.+.|+++..+|.+..
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~   45 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV   45 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccc
Confidence            889999997664         457778888999999998887654

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=88.69  E-value=0.96  Score=29.30  Aligned_cols=95  Identities=11%  Similarity=0.021  Sum_probs=58.6

Q ss_pred             CeEEEEeC---ChhhHHHHHHHHHCC-CeEEEEcCC-----hHHHHHHHHcCC--ceecChhhhhcCCCEEEEeccChh-
Q 044797            3 SKVGFVGL---DEYSVDMAASLIRSG-YKVQAFEIS-----DPLVDKFFMLGG--IRSASPMDAGKDVSALVVVISHVD-   70 (173)
Q Consensus         3 ~~IgiiG~---G~mG~~ia~~l~~~g-~~V~~~d~~-----~~~~~~~~~~g~--~~~~~~~~~~~~~dvii~~v~~~~-   70 (173)
                      .||+++|=   +++..+++..+.+.| ..++++.+.     +...+.+...|.  ..++++.++++++|+|........ 
T Consensus         5 l~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~~e~   84 (160)
T d1ekxa2           5 LHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKER   84 (160)
T ss_dssp             CEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCCGGG
T ss_pred             CEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecccccc
Confidence            47999995   669999999998886 455666432     222333444443  457788999999999886532111 


Q ss_pred             ---hhhhhhcC----ccchhhcCCCCCEEEEcCC
Q 044797           71 ---QIDDIFFG----HEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        71 ---~~~~v~~~----~~~i~~~l~~g~~ii~~st   97 (173)
                         ....-+..    .+++....+++.+|+.+-.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcLP  118 (160)
T d1ekxa2          85 LDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  118 (160)
T ss_dssp             CCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCSC
T ss_pred             cchHHHHHHHHHhhccHHHHHhcCcceeeecCCC
Confidence               11111100    1245556778888888754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.66  E-value=2.3  Score=28.69  Aligned_cols=87  Identities=17%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             CeEEEEeCChhhHHHHHH-HHHCCCeEEEEcCChHHHHHHHHc----C-Cce----ecCh---hhhhcCCCEEEEeccCh
Q 044797            3 SKVGFVGLDEYSVDMAAS-LIRSGYKVQAFEISDPLVDKFFML----G-GIR----SASP---MDAGKDVSALVVVISHV   69 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~-l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~----~~~~---~~~~~~~dvii~~v~~~   69 (173)
                      ++|.=+|||.=.....-. +...| +|++.|.+++.++.+.+.    + +..    ..++   ......+|+++.-++.+
T Consensus        58 ~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~  136 (209)
T d1nt2a_          58 ERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK  136 (209)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCST
T ss_pred             CEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccCh
Confidence            578889887654333221 22334 899999999988766442    1 111    1111   12233455555555544


Q ss_pred             hhhhhhhcCccchhhcCCCCCEEE
Q 044797           70 DQIDDIFFGHEGVLKGLQKGAVII   93 (173)
Q Consensus        70 ~~~~~v~~~~~~i~~~l~~g~~ii   93 (173)
                      .+...++   .++...++||..++
T Consensus       137 ~~~~~~l---~~~~~~LkpgG~l~  157 (209)
T d1nt2a_         137 NQIEILK---ANAEFFLKEKGEVV  157 (209)
T ss_dssp             THHHHHH---HHHHHHEEEEEEEE
T ss_pred             hhHHHHH---HHHHHHhccCCeEE
Confidence            4444444   34556777776553

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.59  E-value=0.2  Score=36.26  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .|.|||.|..|..-|..+.++|.+|.+.++.+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            58899999999999999999999999998764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=88.55  E-value=0.25  Score=36.59  Aligned_cols=31  Identities=26%  Similarity=0.183  Sum_probs=28.0

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      .+-|||.|.-|..+|.+|.+.|.+|.+.++-
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            4679999999999999999999999998764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.69  Score=33.01  Aligned_cols=38  Identities=11%  Similarity=-0.028  Sum_probs=28.5

Q ss_pred             CeEEEE--eCChhhHHHHHHHHHCCCeEE---EEcCChHHHHH
Q 044797            3 SKVGFV--GLDEYSVDMAASLIRSGYKVQ---AFEISDPLVDK   40 (173)
Q Consensus         3 ~~Igii--G~G~mG~~ia~~l~~~g~~V~---~~d~~~~~~~~   40 (173)
                      +||.+|  |.+.+|.++|+.|++.|.+|+   ...++.+..++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~   44 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGR   44 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHH
Confidence            689888  688999999999999997644   34555544433

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.06  E-value=0.39  Score=31.20  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~   34 (173)
                      .||.|||.|+.|.-.|..+.+.|. +|+++-|.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            589999999999999999999986 47666553

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.26  Score=33.66  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQA   30 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~   30 (173)
                      |||.|+|....|..+.+.|.+.|++|.+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~   28 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVG   28 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEE
Confidence            6999999999999999999999999863

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=87.99  E-value=0.42  Score=31.42  Aligned_cols=53  Identities=11%  Similarity=0.009  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEE
Q 044797           12 EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV   64 (173)
Q Consensus        12 ~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~   64 (173)
                      .+..+++..+.+.|+++.++.+..=..+.....++....++.++++++|+|..
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~t   72 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYA   72 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceee
Confidence            46788888999999999988765321111122356788899999999999986

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.76  E-value=0.77  Score=31.22  Aligned_cols=37  Identities=3%  Similarity=0.096  Sum_probs=30.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCChHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFEISDPLVD   39 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~~~~~~   39 (173)
                      -+|-|||.|.-|..++.++.+.+.   +..+.|.+...+.
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~   41 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK   41 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence            468899999999999999998874   5677777765553

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.71  E-value=0.21  Score=33.10  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=20.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSG   25 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g   25 (173)
                      .+|+++|+|.+|+.+++.+.++.
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCC
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhH
Confidence            47999999999999999998654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=87.17  E-value=0.31  Score=34.35  Aligned_cols=28  Identities=11%  Similarity=0.196  Sum_probs=24.0

Q ss_pred             EEEE-eCChhhHHHHHHHHHCCC-eEEEEc
Q 044797            5 VGFV-GLDEYSVDMAASLIRSGY-KVQAFE   32 (173)
Q Consensus         5 Igii-G~G~mG~~ia~~l~~~g~-~V~~~d   32 (173)
                      |.|. |+|.+|+.+++.|++.|+ +|++.|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            4455 799999999999999995 799887

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.14  E-value=0.25  Score=34.07  Aligned_cols=33  Identities=12%  Similarity=0.131  Sum_probs=26.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCC---CeEEEEcCC
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSG---YKVQAFEIS   34 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~d~~   34 (173)
                      |+||.|||.|.-|..-|....+.|   ..|.++++.
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            478999999999998887665544   678899875

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=86.52  E-value=0.41  Score=33.50  Aligned_cols=32  Identities=16%  Similarity=-0.042  Sum_probs=29.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      .+-|||.|..|...|..+.+.|.+|.+.++.+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.12  E-value=0.16  Score=35.30  Aligned_cols=41  Identities=12%  Similarity=0.227  Sum_probs=27.4

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM   43 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~   43 (173)
                      ++|.|||.|+.+.-.|+-+.+.+.+..-.|.++..++.+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~   80 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ   80 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence            58999999999999999998854333333334444444333

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.96  E-value=1.8  Score=27.90  Aligned_cols=92  Identities=13%  Similarity=0.030  Sum_probs=48.0

Q ss_pred             CeEEEE---eCChhhHHHH-HHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cChhhh-hcCCCEEEEeccChhhh---
Q 044797            3 SKVGFV---GLDEYSVDMA-ASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--ASPMDA-GKDVSALVVVISHVDQI---   72 (173)
Q Consensus         3 ~~Igii---G~G~mG~~ia-~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~-~~~~dvii~~v~~~~~~---   72 (173)
                      |||+|+   |.-.+=.... ..|.++|++|.+...+.....  ...|....  .+.++. ..+.|+++++-......   
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~--~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTIT--GKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEE--CTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEe--ecCCcEEeccccHHHcCcccccEEEEecccchhhhcc
Confidence            467776   3333333332 467889999988866543321  12244332  234443 34678888875322110   


Q ss_pred             -hhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797           73 -DDIFFGHEGVLKGLQKGAVIILQSTIL   99 (173)
Q Consensus        73 -~~v~~~~~~i~~~l~~g~~ii~~st~~   99 (173)
                       +.+.   +-+.....+++.+..++++.
T Consensus        79 ~~~~~---~~l~~~~~~~k~i~aiC~G~  103 (166)
T d1g2ia_          79 NEKAV---SIARKMFSEGKPVASICHGP  103 (166)
T ss_dssp             CHHHH---HHHHHHHHTTCCEEEETTTT
T ss_pred             ChHHH---HHHHHHHhcCCeeeeccccc
Confidence             1111   12334455678888877764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.90  E-value=1.2  Score=30.21  Aligned_cols=63  Identities=16%  Similarity=0.046  Sum_probs=42.1

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--CCc-eecChhhhhcCCCEEEEecc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--GGI-RSASPMDAGKDVSALVVVIS   67 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~~-~~~~~~~~~~~~dvii~~v~   67 (173)
                      ++|.-+|||.=  .++..+...|. .|+.+|.+++.++.+++.  .+. ...+..+.-...|+||.-.|
T Consensus        50 k~VLDlGcGtG--~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP  116 (197)
T d1ne2a_          50 RSVIDAGTGNG--ILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP  116 (197)
T ss_dssp             SEEEEETCTTC--HHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred             CEEEEeCCCCc--HHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence            46788899973  34445666664 699999999998877664  222 23445555567888776655

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.63  E-value=3.4  Score=31.04  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=53.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-----------CCc-------e------ecChhhhhc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-----------GGI-------R------SASPMDAGK   57 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----------g~~-------~------~~~~~~~~~   57 (173)
                      .++-=+|||. |....+.....|. +|+++|.++..++.+.+.           +..       .      .....+.+.
T Consensus       218 d~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~  296 (406)
T d1u2za_         218 DTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP  296 (406)
T ss_dssp             CEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred             CEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccc
Confidence            3567789885 4444444444554 799999998776544321           100       0      112235567


Q ss_pred             CCCEEEEec-cChhhhhhhhcCccchhhcCCCCCEEEEc
Q 044797           58 DVSALVVVI-SHVDQIDDIFFGHEGVLKGLQKGAVIILQ   95 (173)
Q Consensus        58 ~~dvii~~v-~~~~~~~~v~~~~~~i~~~l~~g~~ii~~   95 (173)
                      .+|+|++.. -....+...+   .++...|+||..||.+
T Consensus       297 ~adVV~inn~~f~~~l~~~L---~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         297 QCDVILVNNFLFDEDLNKKV---EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GCSEEEECCTTCCHHHHHHH---HHHHTTCCTTCEEEES
T ss_pred             cceEEEEecccCchHHHHHH---HHHHHhcCCCcEEEEe
Confidence            789888742 1233455555   4677889999988875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.51  E-value=0.5  Score=31.36  Aligned_cols=40  Identities=10%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             eEEEEeCChhhHHHHHHHHHC---CCeEEEEc-C-ChHHHHHHHH
Q 044797            4 KVGFVGLDEYSVDMAASLIRS---GYKVQAFE-I-SDPLVDKFFM   43 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~---g~~V~~~d-~-~~~~~~~~~~   43 (173)
                      ||||=|+|++|..+.+.+...   ..+|...| . +++....+.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlk   46 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLK   46 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHh
Confidence            899999999999999998753   36777664 3 2444444444

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.23  E-value=0.64  Score=30.15  Aligned_cols=46  Identities=11%  Similarity=0.140  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEec
Q 044797           14 SVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVI   66 (173)
Q Consensus        14 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v   66 (173)
                      +..++..|.+.|+++.-+..-++..+.+.+       ...++++++|+||++-
T Consensus        29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~DliittG   74 (155)
T d2ftsa3          29 RSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITSG   74 (155)
T ss_dssp             HHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEES
T ss_pred             HHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEec
Confidence            456777777888887655443333344332       2455567789888863

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.94  E-value=4.6  Score=28.47  Aligned_cols=86  Identities=12%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHHH----cCCc-----eecChhhhhcCCCEEEEeccC----
Q 044797            3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFFM----LGGI-----RSASPMDAGKDVSALVVVISH----   68 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~dvii~~v~~----   68 (173)
                      .+|.=||||.=|.  +..+. ..|.+|+.+|.+++..+.+.+    .|..     ...+..+.-..-|.|++.---    
T Consensus        54 ~~VLDiGCG~G~~--a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~~  131 (280)
T d2fk8a1          54 MTLLDIGCGWGTT--MRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFG  131 (280)
T ss_dssp             CEEEEESCTTSHH--HHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGTC
T ss_pred             CEEEEecCCchHH--HHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHhh
Confidence            5788999997553  34454 458999999999988765543    2321     223444544567877765321    


Q ss_pred             hhhhhhhhcCccchhhcCCCCCEEE
Q 044797           69 VDQIDDIFFGHEGVLKGLQKGAVII   93 (173)
Q Consensus        69 ~~~~~~v~~~~~~i~~~l~~g~~ii   93 (173)
                      ....+..+   +++...|+||-.++
T Consensus       132 ~~~~~~~f---~~i~~~LkpgG~~~  153 (280)
T d2fk8a1         132 HENYDDFF---KRCFNIMPADGRMT  153 (280)
T ss_dssp             GGGHHHHH---HHHHHHSCTTCEEE
T ss_pred             hhhHHHHH---HHHHhccCCCceEE
Confidence            12223444   45677788876654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=84.92  E-value=0.41  Score=34.78  Aligned_cols=31  Identities=13%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             EEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |-|||.|.-|..-|..+.++|.+|.+.++.+
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            8899999999999999999999999998764

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=84.52  E-value=0.52  Score=34.80  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             CeEEEEe-------CChhh---HHHHHHHHHCCCeEEEEc
Q 044797            3 SKVGFVG-------LDEYS---VDMAASLIRSGYKVQAFE   32 (173)
Q Consensus         3 ~~IgiiG-------~G~mG---~~ia~~l~~~g~~V~~~d   32 (173)
                      |||.+++       .|.+|   ..+++.|.+.||+|+++-
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt   40 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT   40 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            6899987       35554   678999999999998764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.23  E-value=0.38  Score=33.76  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=28.4

Q ss_pred             CCeEEEEeCChhhHH-----HHHHHHHCCCeEEEEcCChH
Q 044797            2 ASKVGFVGLDEYSVD-----MAASLIRSGYKVQAFEISDP   36 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-----ia~~l~~~g~~V~~~d~~~~   36 (173)
                      |++|+|.|-|-.|..     +|..|++.|++|.++|-++.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            578999998887754     56678889999999998763

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=83.99  E-value=0.42  Score=33.17  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             eCChhhHHHHHHHHHCCCeEEEEc
Q 044797            9 GLDEYSVDMAASLIRSGYKVQAFE   32 (173)
Q Consensus         9 G~G~mG~~ia~~l~~~g~~V~~~d   32 (173)
                      -.|.||.++|+.+..+|++|+++.
T Consensus        30 SSGk~G~aiA~~~~~~Ga~V~li~   53 (223)
T d1u7za_          30 SSGKMGFAIAAAAARRGANVTLVS   53 (223)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCchhhhh
Confidence            379999999999999999998764

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=83.78  E-value=3.3  Score=25.51  Aligned_cols=93  Identities=13%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccCh------h-hhhhhhcCccchhh
Q 044797           12 EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHV------D-QIDDIFFGHEGVLK   84 (173)
Q Consensus        12 ~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~------~-~~~~v~~~~~~i~~   84 (173)
                      .++..+++.|.+.|.++.++|.+..              ++.+ +.++|.|++..|.-      . .++..+   +.+..
T Consensus        15 ~~A~~ia~~l~~~g~~v~~~~~~~~--------------~~~~-l~~~d~ii~g~pT~~~g~~p~~~~~~~~---~~~~~   76 (137)
T d2fz5a1          15 AMANEIEAAVKAAGADVESVRFEDT--------------NVDD-VASKDVILLGCPAMGSEELEDSVVEPFF---TDLAP   76 (137)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETTSC--------------CHHH-HHTCSEEEEECCCBTTTBCCHHHHHHHH---HHHGG
T ss_pred             HHHHHHHHHHHhcCCceEEeehhhH--------------HHhh-hhccceEEEEEecccCCcCChhHHHHHH---HHhcc
Confidence            4677788888888999888875532              2233 34688999888731      1 122232   12222


Q ss_pred             cCCCCCE---EEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797           85 GLQKGAV---IILQSTILPSHMQKLEKTFTGNLTFYILERMF  123 (173)
Q Consensus        85 ~l~~g~~---ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~  123 (173)
                      .+ +++.   +.+.........+.+.+.++..|...+.....
T Consensus        77 ~~-~gk~~~~fgs~g~~~~~a~~~l~~~l~~~G~~~v~~~~~  117 (137)
T d2fz5a1          77 KL-KGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIGTAIV  117 (137)
T ss_dssp             GC-SSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cc-CCCeEEEEEecCCCcCHHHHHHHHHHHHCCCEEeeceee
Confidence            23 3433   33333334556688889999899888776543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.71  E-value=0.55  Score=31.75  Aligned_cols=32  Identities=13%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS   34 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~   34 (173)
                      +||.|||+|.-|..+|..+.+.+.+++..-|+
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            68999999999999999999988877655444

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.67  E-value=0.53  Score=31.11  Aligned_cols=42  Identities=12%  Similarity=0.082  Sum_probs=32.0

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEEEEc-C--ChHHHHHHHHc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFE-I--SDPLVDKFFML   44 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d-~--~~~~~~~~~~~   44 (173)
                      +||||=|+|++|..+.+.+... ..+|.+.| +  +++....+.+.
T Consensus         1 tkigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlky   46 (166)
T d2b4ro1           1 TKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKY   46 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHC
T ss_pred             CeEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhc
Confidence            4899999999999999998865 47777764 4  45666666554

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=83.47  E-value=1.2  Score=29.82  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=24.0

Q ss_pred             CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEc
Q 044797            2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFE   32 (173)
Q Consensus         2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d   32 (173)
                      |||||||-. |+..+ ..+.|.+.|.++..++
T Consensus         1 m~~igv~~~~G~~~~-~~~al~~~G~~~~~i~   31 (195)
T d2nv0a1           1 MLTIGVLGLQGAVRE-HIHAIEACGAAGLVVK   31 (195)
T ss_dssp             CCEEEEECSSSCCHH-HHHHHHHTTCEEEEEC
T ss_pred             CcEEEEEecCChHHH-HHHHHHHCCCcEEEEC
Confidence            689999988 88855 4678888998887664

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=1.7  Score=28.28  Aligned_cols=96  Identities=11%  Similarity=0.027  Sum_probs=56.8

Q ss_pred             CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCC-----hHHHHHH----HHcC--CceecChhhhhcCCCEEEEeccCh-
Q 044797            3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEIS-----DPLVDKF----FMLG--GIRSASPMDAGKDVSALVVVISHV-   69 (173)
Q Consensus         3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~-----~~~~~~~----~~~g--~~~~~~~~~~~~~~dvii~~v~~~-   69 (173)
                      .||+++|-++ +.++++..+...|.++++..+.     ++-.+..    .+.|  +...+++.++++++|++.....-. 
T Consensus         5 l~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~~~~   84 (170)
T d1otha2           5 LTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISM   84 (170)
T ss_dssp             CEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCT
T ss_pred             CEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeeceecc
Confidence            5899998753 4455555556678998887653     2222222    2223  456788999999999999865311 


Q ss_pred             ---hhh---hhhh---cCccchhhcCCCCCEEEEcCCC
Q 044797           70 ---DQI---DDIF---FGHEGVLKGLQKGAVIILQSTI   98 (173)
Q Consensus        70 ---~~~---~~v~---~~~~~i~~~l~~g~~ii~~st~   98 (173)
                         ...   ....   .-..++....+++.+|+.+...
T Consensus        85 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP~  122 (170)
T d1otha2          85 GREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPR  122 (170)
T ss_dssp             TCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCC
T ss_pred             cchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCCc
Confidence               000   1110   0012344567788888888654

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.44  E-value=0.91  Score=30.72  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=25.5

Q ss_pred             CCeEEEEeCChhhHHHHHHHHHCCCeEE
Q 044797            2 ASKVGFVGLDEYSVDMAASLIRSGYKVQ   29 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~   29 (173)
                      .|||.|+|.+..+..+.+.|.+.|+++.
T Consensus         3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~   30 (206)
T d1fmta2           3 SLRIIFAGTPDFAARHLDALLSSGHNVV   30 (206)
T ss_dssp             CCEEEEEECSHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCEE
Confidence            4799999999999999999999999864

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=83.37  E-value=0.65  Score=30.80  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=30.9

Q ss_pred             CeEEEEeCChhhHHHHHHHHHC-CCeEEEEc-C--ChHHHHHHHHc
Q 044797            3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFE-I--SDPLVDKFFML   44 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d-~--~~~~~~~~~~~   44 (173)
                      -||||=|+|++|..+.+.+... ..++.+.+ +  +++.+..+.+.
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlky   47 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQY   47 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHC
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhh
Confidence            4899999999999999988755 47887664 3  34555555553

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.35  E-value=5.8  Score=28.15  Aligned_cols=86  Identities=10%  Similarity=0.043  Sum_probs=50.2

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----cCCc-----eecChhhhhcCCCEEEEeccChhhh-
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----LGGI-----RSASPMDAGKDVSALVVVISHVDQI-   72 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~dvii~~v~~~~~~-   72 (173)
                      ++|.=||||.=|.+ .....+.|.+|+.++.+++..+...+    .|..     ...+..+.-..-|.|++.-- -.++ 
T Consensus        63 ~~VLDiGCG~G~~~-~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~-~eH~~  140 (291)
T d1kpia_          63 MTLLDIGCGWGSTM-RHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGA-FEHFA  140 (291)
T ss_dssp             CEEEEETCTTSHHH-HHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESC-GGGTT
T ss_pred             CEEEEecCcchHHH-HHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechh-HHhcc
Confidence            57889999965532 23334678999999999987654333    3322     12233333345787776532 1122 


Q ss_pred             -----------hhhhcCccchhhcCCCCCEEE
Q 044797           73 -----------DDIFFGHEGVLKGLQKGAVII   93 (173)
Q Consensus        73 -----------~~v~~~~~~i~~~l~~g~~ii   93 (173)
                                 +..+   +.+...|+||..++
T Consensus       141 ~~~~~~~~~~~~~~f---~~i~~~LkpgG~~~  169 (291)
T d1kpia_         141 DGAGDAGFERYDTFF---KKFYNLTPDDGRML  169 (291)
T ss_dssp             CCSSCCSTTHHHHHH---HHHHHTSCTTCEEE
T ss_pred             hhhhhhHHHHHHHHH---HHHHHhCCCCCceE
Confidence                       2333   35667788877654

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=0.7  Score=31.39  Aligned_cols=29  Identities=17%  Similarity=0.320  Sum_probs=26.3

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEE-EE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AF   31 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~   31 (173)
                      |||.++|.+.+|....+.|.+.|++|. ++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vv   30 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIF   30 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEE
Confidence            699999999999999999999999985 44

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=0.78  Score=28.57  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      ++|+|||.|+-+.-.|..|.+..-+|+++-|.+
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            589999999999999999999888999887654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=82.69  E-value=3  Score=30.07  Aligned_cols=95  Identities=11%  Similarity=0.040  Sum_probs=58.9

Q ss_pred             CeEEEEeC---ChhhHHHHHHHHHCC-CeEEEEcCC-----hHHHHHHHHcC--CceecChhhhhcCCCEEEEeccCh--
Q 044797            3 SKVGFVGL---DEYSVDMAASLIRSG-YKVQAFEIS-----DPLVDKFFMLG--GIRSASPMDAGKDVSALVVVISHV--   69 (173)
Q Consensus         3 ~~IgiiG~---G~mG~~ia~~l~~~g-~~V~~~d~~-----~~~~~~~~~~g--~~~~~~~~~~~~~~dvii~~v~~~--   69 (173)
                      .||+++|-   +++..+++..+.+.| .+++++.+.     ++-.+.+.+.+  +...++++++++++|+|....-..  
T Consensus       155 ~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~~e~  234 (310)
T d1tuga1         155 LHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKER  234 (310)
T ss_dssp             CEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCCCGGG
T ss_pred             ceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeecccchhh
Confidence            57999996   788888888888775 688877543     23334444444  345678999999999887542211  


Q ss_pred             ---hhhhhhhc---CccchhhcCCCCCEEEEcCC
Q 044797           70 ---DQIDDIFF---GHEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        70 ---~~~~~v~~---~~~~i~~~l~~g~~ii~~st   97 (173)
                         ........   -..++....+++.+|+.+-.
T Consensus       235 ~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLP  268 (310)
T d1tuga1         235 LDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  268 (310)
T ss_dssp             SCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSC
T ss_pred             hcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCC
Confidence               11111110   01234455677888887754

>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Hypothetical protein SP1951
domain: Hypothetical protein SP1951
species: (Streptococcus pneumoniae) [TaxId: 1313]

Probab=82.18  E-value=5.6  Score=27.02  Aligned_cols=129  Identities=11%  Similarity=0.042  Sum_probs=64.8

Q ss_pred             CCeEEEE-eC----C---hhhHHHHHHHHHCC-CeEEEEcCChHHH-------HHHHHcCCcee---cC---hhhhhcCC
Q 044797            2 ASKVGFV-GL----D---EYSVDMAASLIRSG-YKVQAFEISDPLV-------DKFFMLGGIRS---AS---PMDAGKDV   59 (173)
Q Consensus         2 ~~~Igii-G~----G---~mG~~ia~~l~~~g-~~V~~~d~~~~~~-------~~~~~~g~~~~---~~---~~~~~~~~   59 (173)
                      |+||.+| |.    |   .+...+.+.|.+.+ .++..+|..+..+       ......+...+   ++   ..+.+.+|
T Consensus         1 MkkI~ii~gS~r~~s~t~~l~~~~~~~l~~~~~~e~~~~~l~~~~i~~~~~~~~~c~~~~~~~~~~~d~~~~i~~~i~~A   80 (232)
T d1sqsa_           1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLES   80 (232)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEEeccccccchhhhHHHHhhhcccccccchHHHHHHHHHHHhC
Confidence            4677777 42    1   33444455555555 5787777543221       22222222221   11   23446789


Q ss_pred             CEEEEeccC-----hhhhhhhhcCcc--chhhcCCCCCEE--E-Ec-CCCCHHHHHHHHHHHhcCCceeeeceeeeeecC
Q 044797           60 SALVVVISH-----VDQIDDIFFGHE--GVLKGLQKGAVI--I-LQ-STILPSHMQKLEKTFTGNLTFYILERMFLISSS  128 (173)
Q Consensus        60 dvii~~v~~-----~~~~~~v~~~~~--~i~~~l~~g~~i--i-~~-st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~  128 (173)
                      |.||++.|.     +..++..+..-.  ...+.+ .|+..  + .. +.+.-.....+...+...|...+.......+.+
T Consensus        81 D~iI~~sP~y~~~~s~~lK~~iDr~~~~~~~~~l-~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~G~~~v~~~~~~~~~~  159 (232)
T d1sqsa_          81 DIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRL-AGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQILHQVSITNSLK  159 (232)
T ss_dssp             SEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTT-TTCEEEEEEEESSCCSCCHHHHHHHHHHHTTCEEEEEEEEEGGGG
T ss_pred             CEEEEEeccccCcchHHHHHHHHHhHhhhccccc-cCCeEEEEEEccCCcHHHHHHHHHHHHHHCCCEEeceeEEecCCC
Confidence            999999982     234555552100  001112 24432  2 22 223334567788888888888776654444444


Q ss_pred             Hhh
Q 044797          129 IDC  131 (173)
Q Consensus       129 ~~~  131 (173)
                      +..
T Consensus       160 ~~~  162 (232)
T d1sqsa_         160 DIA  162 (232)
T ss_dssp             GGH
T ss_pred             chh
Confidence            433

>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein PA1204
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.08  E-value=4.5  Score=26.20  Aligned_cols=115  Identities=13%  Similarity=0.024  Sum_probs=56.0

Q ss_pred             CeEEEE-eCChh---hHHHHHHHH---HCCCeEEEEcCChHHH--HHHHHcCCc-eecChhhhhcCCCEEEEeccCh---
Q 044797            3 SKVGFV-GLDEY---SVDMAASLI---RSGYKVQAFEISDPLV--DKFFMLGGI-RSASPMDAGKDVSALVVVISHV---   69 (173)
Q Consensus         3 ~~Igii-G~G~m---G~~ia~~l~---~~g~~V~~~d~~~~~~--~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~---   69 (173)
                      |||.+| |.=+-   ...+++.+.   +.|++|..+|.+.-..  ....+.+.. ......+.+..+|.+|+++|..   
T Consensus         1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~~~~ev~~idl~dlP~~~~d~~~~~~~~~~~~~~~~i~~aD~iii~sP~y~~s   80 (174)
T d1rtta_           1 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYS   80 (174)
T ss_dssp             CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTE
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecccCCCccccccccCCCHHHHHHHHHhhcCCeEEEEccchhcc
Confidence            466655 54333   344444443   3578999888653110  111111111 1223445677899999999832   


Q ss_pred             --hhhhhhhcCccchh---hcCCCCCEEE--EcCCC---CHHHHHHHHHHHhcCCceeeec
Q 044797           70 --DQIDDIFFGHEGVL---KGLQKGAVII--LQSTI---LPSHMQKLEKTFTGNLTFYILE  120 (173)
Q Consensus        70 --~~~~~v~~~~~~i~---~~l~~g~~ii--~~st~---~~~~~~~l~~~l~~~g~~~v~~  120 (173)
                        ..++..+   +-+.   ...-.|+.+.  .++.+   .......+...+...|...+..
T Consensus        81 ~~~~lKn~i---D~l~~~~~~~~~gK~~~~i~~sgG~~~~~~~~~~l~~~l~~~g~~~i~~  138 (174)
T d1rtta_          81 MAGVLKNAI---DWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNK  138 (174)
T ss_dssp             ECHHHHHHH---HHHTCSSSCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHHTCEECCS
T ss_pred             ccHHHHHHH---HHHhcccccccCCCEEEEEEECCCccchHHHHHHHHHHHHHCCCEEcCC
Confidence              3455555   1111   1112355443  23332   2334455666666566655543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=1.2  Score=32.05  Aligned_cols=34  Identities=24%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLV   38 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~   38 (173)
                      ++|.-|||| .|. ++..++++|. +|++.|.++...
T Consensus        37 ~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          37 KVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQSEILY   71 (311)
T ss_dssp             CEEEEETCT-TSH-HHHHHHHTTCSEEEEEESSTHHH
T ss_pred             CEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCHHHHH
Confidence            468889999 443 4556677784 799999997643

>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: NAD(P)H:quinone reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=0.88  Score=32.43  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=24.7

Q ss_pred             CCCeEEEE-eC-------ChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797            1 MASKVGFV-GL-------DEYSVDMAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         1 m~~~Igii-G~-------G~mG~~ia~~l~~~g~~V~~~d~~~   35 (173)
                      |++||.|| |-       ..+.....+.+.++|++|.+.|...
T Consensus         1 m~KKiLiI~ahP~~~S~~~aL~~~~~~~l~~~G~eV~~~DLy~   43 (273)
T d1d4aa_           1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYA   43 (273)
T ss_dssp             CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred             CCCeEEEEEcCCCCccHHHHHHHHHHHHHHHCCCEEEEEECcc
Confidence            78899888 42       2344455566778999999988643

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=80.75  E-value=2  Score=30.68  Aligned_cols=43  Identities=12%  Similarity=0.093  Sum_probs=29.4

Q ss_pred             CeEEEEeCChhhH-----HHHHHHHHCCCeEEEEcCChHHHHHHHHcCC
Q 044797            3 SKVGFVGLDEYSV-----DMAASLIRSGYKVQAFEISDPLVDKFFMLGG   46 (173)
Q Consensus         3 ~~IgiiG~G~mG~-----~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~   46 (173)
                      |||.+.+.|.=|.     ++|+.|.++||+|++.. +++..+.+.+.|+
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~-~~~~~~~v~~~g~   48 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCA-PPDCAERLAEVGV   48 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC
T ss_pred             CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEe-CcchHHHHHHcCC
Confidence            5899998886443     47899999999998775 3333334444443

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=80.74  E-value=0.84  Score=34.01  Aligned_cols=31  Identities=23%  Similarity=0.139  Sum_probs=27.1

Q ss_pred             eEEEEeCChhhHHHHHHHHHCC-CeEEEEcCC
Q 044797            4 KVGFVGLDEYSVDMAASLIRSG-YKVQAFEIS   34 (173)
Q Consensus         4 ~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~   34 (173)
                      .+-|||.|.-|..+|.+|.+.| ++|.+.++-
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG   57 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG   57 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4679999999999999999988 699998754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.70  E-value=0.67  Score=32.85  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             CCeEEEEeCChhhHH-----HHHHHHHCCCeEEEEcCCh
Q 044797            2 ASKVGFVGLDEYSVD-----MAASLIRSGYKVQAFEISD   35 (173)
Q Consensus         2 ~~~IgiiG~G~mG~~-----ia~~l~~~g~~V~~~d~~~   35 (173)
                      |++|+|-|-|.+|..     +|..|++.|++|.++|-++
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            567988898888865     5777889999999998875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.55  E-value=0.21  Score=34.38  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             CeEEEEeCChhhHHHHHHHHH
Q 044797            3 SKVGFVGLDEYSVDMAASLIR   23 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~   23 (173)
                      ++|.|||.|+.+.-.|+-+++
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~   60 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLT   60 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHS
T ss_pred             ceEEEECCCchhHhhhhhhcc
Confidence            589999999999999998873

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.41  E-value=1.7  Score=29.04  Aligned_cols=75  Identities=12%  Similarity=0.105  Sum_probs=42.9

Q ss_pred             CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc-C--
Q 044797            3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF-G--   78 (173)
Q Consensus         3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~-~--   78 (173)
                      ||||||-+ |+. ..+.+.|.+.|+++...+.                  +++ +.++|.+|++=.........+. .  
T Consensus         7 mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~~------------------~~~-l~~~D~lIlPGG~~~~~~~~l~~~~l   66 (202)
T d1q7ra_           7 MKIGVLGLQGAV-REHVRAIEACGAEAVIVKK------------------SEQ-LEGLDGLVLPGGESTTMRRLIDRYGL   66 (202)
T ss_dssp             CEEEEESCGGGC-HHHHHHHHHTTCEEEEECS------------------GGG-GTTCSEEEECCCCHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCH-HHHHHHHHHCCCcEEEECC------------------HHH-HhcCCEEEECCCCcHHHHHHhhhhHH
Confidence            79999988 887 5556888888988776531                  222 4568888886532211111110 0  


Q ss_pred             ccchhhcCCCCCEEEEcCC
Q 044797           79 HEGVLKGLQKGAVIILQST   97 (173)
Q Consensus        79 ~~~i~~~l~~g~~ii~~st   97 (173)
                      .+.+....+.|+-++-++-
T Consensus        67 ~~~I~~~~~~gkPiLGICl   85 (202)
T d1q7ra_          67 MEPLKQFAAAGKPMFGTCA   85 (202)
T ss_dssp             HHHHHHHHHTTCCEEEETT
T ss_pred             HHHHhhhccccceeeeeeh
Confidence            0123444556666665554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.09  E-value=0.45  Score=30.67  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=23.5

Q ss_pred             CeEEEEeCChhhHHHHHHHHHCCCeE
Q 044797            3 SKVGFVGLDEYSVDMAASLIRSGYKV   28 (173)
Q Consensus         3 ~~IgiiG~G~mG~~ia~~l~~~g~~V   28 (173)
                      +|+.|||.|+.|.-.|..+.+.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            58999999999999999999998654