Citrus Sinensis ID: 044830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-
Protein Sequence
MDASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQRI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccEEEcccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccHHHHHcccccccEEEccccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccEEEEEccccccccccccEEEccccEEEEEcccccccccccEEEcccccccccccHHHHHccccccccEEEccccEEEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccccccEEEEEEEEEccccHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEHHHHHHHccccEEEEEEEEEccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHHHHHccccccEEEEccccccccccHHHccccccEEEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccHHHcccccccccEEEEcccccccccccHHHcccccccEEEEccccccccccccccccccccccEEEEEccccccccccHHHcccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEccccccccccccHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccccccccccHEEHHcccccccccHHHHHHHHEEEEEccccccEEcccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccHEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdasasshcdaavtypktkswnkdgdccswdgiicdemtghvigldlssswllgtlhpnstLFLLHHLQKLNLAcndfngtkissnfgqftklthlnlsfsyfsgivpsqISRLSKLVALDlssdiprtkfeQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSlgncflrgefpidifhfpflrqltlsdnglltgnlptsnwssplrildlsitkfsgkipdtignlrdlkfLDLYVCYfdgqvpaslsnlkqltvlnlednqfsgefpdvfgnlsKLTRISLAHlnftgqlplsafnltQLSLLELSrnqfvgqlpchasclplshlklggnfldgripswlfnlstsenlveldlsnnkltgqifqldqwpverisSVELRHLDVQSNLLQRLPFILSSRIRflsvsdnkltgefpssicnlstIEYLNLsnnslsgmipqclanfdslslldlrknqfrgsipqIFSKCYDLVALNlndnelegklppslancgdlevldvgnnkindafpywtatlpRLQVLVLRsnsfhgpiynnvpsikrpfpelriidisrngftgllpARYFQSLKAmmhgdnddidldymnsagydqYYSMILTYKGVDLEMERVLNIFTTidlsnnrfegmipkevgklsslkllnfshnilrgeipvELTSLTALSVLNLSFnqlvgpipqgkqfdsfqndsfignlglcgfaltqqcsnyevppapmpeeddtssswawfDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDaekmrrikprpqri
Flexible Loop (DISEMBL)
mdasasshcdaavtypktkswnkdGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGnlptsnwssplRILDLSITkfsgkipdtigNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGpiynnvpsikrpfPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERhdaekmrrikprpqri
Low Complexity Region (SEG)
MDASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTlfllhhlqklnlACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPssllnlssaslislslGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQRI
Disordered region (IsUnstruct)
**********AAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYE**************SWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFE*****************
Disordered Region (DISOPRED)
MDASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH*********YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFA***************************FDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKM***K******
Disordered Region (DISEMBL)
***********AVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPP**********SSWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMR*********
Disordered Region (DISPRO)
MDASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQC********************AWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKM**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	801	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.903	0.854	0.345	1e-107
Q9FL28	1173	LRR receptor-like serine/	no	no	0.823	0.562	0.320	2e-70
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.769	0.493	0.319	3e-69
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.790	0.505	0.302	2e-61
Q9LP24	1120	Probable leucine-rich rep	no	no	0.815	0.583	0.301	2e-60
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.828	0.591	0.290	3e-59
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.813	0.599	0.306	5e-59
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.808	0.588	0.291	4e-58
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.865	0.628	0.301	6e-58
Q9SGP2	996	Receptor-like protein kin	no	no	0.750	0.603	0.289	1e-57

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 287/831 (34%), Positives = 422/831 (50%), Gaps = 107/831 (12%)

Query: 21  WNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLA-CNDFN 79
           WNK  DCC W+G+ C++ +G VI LD+ +++L   L  NS+LF L +L+ L+L  CN + 
Sbjct: 65  WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query: 80  GTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNL 139
             +I S+ G  + LT +NL F+ F G                   +IP +          
Sbjct: 125 --EIPSSLGNLSHLTLVNLYFNKFVG-------------------EIPAS---------- 153

Query: 140 AKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQL 199
             NL +LR+L+L N  +   +PSSL NLS   L++L L +  L G+ P  I     LR L
Sbjct: 154 IGNLNQLRHLILANNVLTGEIPSSLGNLSR--LVNLELFSNRLVGKIPDSIGDLKQLRNL 211

Query: 200 TLSDNGLLTGNLPTS--NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
           +L+ N L+ G +P+S  N S+ + ++ L+  +  G++P +IGNL +L+ +        G 
Sbjct: 212 SLASNNLI-GEIPSSLGNLSNLVHLV-LTHNQLVGEVPASIGNLIELRVMSFENNSLSGN 269

Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS 317
           +P S +NL +L++  L  N F+  FP        L    +++ +F+G  P S   +  L 
Sbjct: 270 IPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLE 329

Query: 318 LLELSRNQFVG--QLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
            + L  NQF G  +    +S   L  L LG N L G IP    ++S   NL ELD+S+N 
Sbjct: 330 SIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPE---SISRLLNLEELDISHNN 386

Query: 376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQ--------RLPFILSSRIRF-------- 419
            TG I      P      V L HLD+  N L+        RL  ++ S   F        
Sbjct: 387 FTGAI------PPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQ 440

Query: 420 -------LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD-SLSLLDLR 471
                  L ++ N   G  P  IC LS++ +L+LSNN  SG IP C+ NF  S+  L+L 
Sbjct: 441 EEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLG 500

Query: 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT 531
            N F G++P IFSK  +LV+L+++ N+LEGK P SL NC  LE+++V +NKI D FP W 
Sbjct: 501 DNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL 560

Query: 532 ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAM- 590
            +LP L VL LRSN F+GP+Y+   SI   F  LRIIDIS N F+G LP  YF + K M 
Sbjct: 561 ESLPSLHVLNLRSNKFYGPLYHRHASIG--FQSLRIIDISHNNFSGTLPPYYFSNWKDMT 618

Query: 591 -MHGDNDDIDLDYMNSAGYDQYY-SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPK 648
            +  + D    ++   A  D YY  M +  KGVD+  ER+   F  ID S N+  G IP+
Sbjct: 619 TLTEEMDQYMTEFWRYA--DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPE 676

Query: 649 EVGKLSSLKLLNF------------------------SHNILRGEIPVELTSLTALSVLN 684
            +G L  L++LN                         S N L G+IP +L +L+ LS +N
Sbjct: 677 SLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMN 736

Query: 685 LSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWA 744
            S N L GP+P+G QF   +  SF+ N GL G     + +    P + +P ED + +   
Sbjct: 737 FSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLP-EDLSEAEEN 795

Query: 745 WFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIK 795
            F+W    + YG GV+ GL +G+  +++    W     F R   + +  +K
Sbjct: 796 MFNWVAAAIAYGPGVLCGLVIGHF-YTSHNHEWF-TEKFGRKQHKALTSVK 844

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  268 bits (684), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 241/753 (32%), Positives = 350/753 (46%), Gaps = 93/753 (12%)

Query: 28  CSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNF 87
           C+W GI CD  TGHV+ + L    L G L P   +  L +LQ L+L  N F G KI +  
Sbjct: 61  CNWTGITCDS-TGHVVSVSLLEKQLEGVLSP--AIANLTYLQVLDLTSNSFTG-KIPAEI 116

Query: 88  GQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL-----SSDIPRTKFEQHT------- 135
           G+ T+L  L L  +YFSG +PS I  L  +  LDL     S D+P    +  +       
Sbjct: 117 GKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFD 176

Query: 136 FNNLAKNLTELRYLLLDNVQMFSV--------VPSSLLNLSSASLISLSLGNCFLRGEFP 187
           +NNL   + E    L+ ++QMF          +P S+  L  A+L  L L    L G+ P
Sbjct: 177 YNNLTGKIPECLGDLV-HLQMFVAAGNHLTGSIPVSIGTL--ANLTDLDLSGNQLTGKIP 233

Query: 188 IDIFHFPFLRQLTLSDNGLLTGNLPTS--NWSSPLRILDLSITKFSGKIPDTIGNLRDLK 245
            D  +   L+ L L++N LL G++P    N SS ++ L+L   + +GKIP  +GNL  L+
Sbjct: 234 RDFGNLLNLQSLVLTEN-LLEGDIPAEIGNCSSLVQ-LELYDNQLTGKIPAELGNLVQLQ 291

Query: 246 FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ 305
            L +Y       +P+SL  L QLT L L +N   G   +  G L  L  ++L   NFTG+
Sbjct: 292 ALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGE 351

Query: 306 LPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSE 364
            P S  NL  L++L +  N   G+LP     L  L +L    N L G IPS + N +   
Sbjct: 352 FPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCT--- 408

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN-LLQRLP--FILSSRIRFLS 421
            L  LDLS+N++TG+I +           + L  + +  N     +P      S +  LS
Sbjct: 409 GLKLLDLSHNQMTGEIPR-------GFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLS 461

Query: 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
           V+DN LTG     I  L  +  L +S NSL+G IP+ + N   L++L L  N F G IP+
Sbjct: 462 VADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPR 521

Query: 482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV 541
             S    L  L +  N+LEG +P  + +   L VLD+ NNK +   P   + L  L  L 
Sbjct: 522 EMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLS 581

Query: 542 LRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLD 601
           L+ N F+G I    P+  +    L   DIS N  TG +P     SLK M       + L+
Sbjct: 582 LQGNKFNGSI----PASLKSLSLLNTFDISDNLLTGTIPGELLASLKNM------QLYLN 631

Query: 602 YMN---SAGYDQYYSMILTYKGVDL-----------EMERVLNIFT-------------- 633
           + N   +    +    +   + +DL            ++   N+FT              
Sbjct: 632 FSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPD 691

Query: 634 ----------TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVL 683
                     +++LS N F G IP+  G ++ L  L+ S N L GEIP  L +L+ L  L
Sbjct: 692 EVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHL 751

Query: 684 NLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCG 716
            L+ N L G +P+   F +      +GN  LCG
Sbjct: 752 KLASNNLKGHVPESGVFKNINASDLMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  263 bits (673), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 211/661 (31%), Positives = 332/661 (50%), Gaps = 45/661 (6%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
           L +L+ LNLA N   G +I S  G+ ++L +L+L  +   G++P  ++ L  L  LDLS+
Sbjct: 238 LENLEILNLANNSLTG-EIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSA 296

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
           +    +  +  +N     +++L  L+L N  +   +P S+ + ++ +L  L L    L G
Sbjct: 297 NNLTGEIPEEFWN-----MSQLLDLVLANNHLSGSLPKSICS-NNTNLEQLVLSGTQLSG 350

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWS-SPLRILDLSITKFSGKIPDTIGNLRD 243
           E P+++     L+QL LS+N L  G++P + +    L  L L      G +  +I NL +
Sbjct: 351 EIPVELSKCQSLKQLDLSNNSL-AGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTN 409

Query: 244 LKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT 303
           L++L LY    +G++P  +S L++L VL L +N+FSGE P   GN + L  I +   +F 
Sbjct: 410 LQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFE 469

Query: 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCH-ASCLPLSHLKLGGNFLDGRIPSWLFNLST 362
           G++P S   L +L+LL L +N+ VG LP    +C  L+ L L  N L G IPS    L  
Sbjct: 470 GEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKG 529

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL--PFILSSRIRFL 420
            E L+   L NN L G +      P   IS   L  +++  N L     P   SS     
Sbjct: 530 LEQLM---LYNNSLQGNL------PDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSF 580

Query: 421 SVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP 480
            V++N    E P  + N   ++ L L  N L+G IP  L     LSLLD+  N   G+IP
Sbjct: 581 DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP 640

Query: 481 QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVL 540
                C  L  ++LN+N L G +PP L     L  L + +N+  ++ P       +L VL
Sbjct: 641 LQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVL 700

Query: 541 VLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDL 600
            L  NS +G I   + ++      L ++++ +N F+G LP    Q++  +          
Sbjct: 701 SLDGNSLNGSIPQEIGNLG----ALNVLNLDKNQFSGSLP----QAMGKL---------- 742

Query: 601 DYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLN 660
               S  Y+   S       + +E+ ++ ++ + +DLS N F G IP  +G LS L+ L+
Sbjct: 743 ----SKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLD 798

Query: 661 FSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALT 720
            SHN L GE+P  +  + +L  LN+SFN L G +   KQF  +  DSF+GN GLCG  L+
Sbjct: 799 LSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLS 856

Query: 721 Q 721
           +
Sbjct: 857 R 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  238 bits (606), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 209/692 (30%), Positives = 324/692 (46%), Gaps = 59/692 (8%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
           L  LQ L L  N+  G  I +  G  T L     +F+  +G +P++++RL  L  L+L  
Sbjct: 191 LVQLQTLILQDNELEG-PIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
           +     F     + L  +L  ++YL L   Q+  ++P  L  L  A+L +L L +  L G
Sbjct: 250 N----SFSGEIPSQLG-DLVSIQYLNLIGNQLQGLIPKRLTEL--ANLQTLDLSSNNLTG 302

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWS--SPLRILDLSITKFSGKIPDTIGNLR 242
               + +    L  L L+ N  L+G+LP +  S  + L+ L LS T+ SG+IP  I N +
Sbjct: 303 VIHEEFWRMNQLEFLVLAKN-RLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQ 361

Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302
            LK LDL      GQ+P SL  L +LT L L +N   G       NL+ L   +L H N 
Sbjct: 362 SLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNL 421

Query: 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCH-ASCLPLSHLKLGGNFLDGRIPSWLFNLS 361
            G++P     L +L ++ L  N+F G++P    +C  L  +   GN L G IPS +  L 
Sbjct: 422 EGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL- 480

Query: 362 TSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQ-RLP--FILSSRIR 418
             ++L  L L  N+L G I      P    +  ++  +D+  N L   +P  F   + + 
Sbjct: 481 --KDLTRLHLRENELVGNI------PASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALE 532

Query: 419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI-PQC------------------- 458
              + +N L G  P S+ NL  +  +N S+N  +G I P C                   
Sbjct: 533 LFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDI 592

Query: 459 ---LANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEV 515
              L    +L  L L KNQF G IP+ F K  +L  L+++ N L G +P  L  C  L  
Sbjct: 593 PLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTH 652

Query: 516 LDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575
           +D+ NN ++   P W   LP L  L L SN F G +   + S+      +  + +  N  
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTN----ILTLFLDGNSL 708

Query: 576 TGLLPARY--FQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKG----VDLEMERVL 629
            G +P      Q+L A+   +N              + + + L+       + +E+ ++ 
Sbjct: 709 NGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQ 768

Query: 630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ 689
           ++ + +DLS N F G IP  +  L  L+ L+ SHN L GE+P ++  + +L  LNLS+N 
Sbjct: 769 DLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNN 828

Query: 690 LVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQ 721
           L G +   KQF  +Q D+F+GN GLCG  L+ 
Sbjct: 829 LEGKLK--KQFSRWQADAFVGNAGLCGSPLSH 858

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 229/760 (30%), Positives = 343/760 (45%), Gaps = 107/760 (14%)

Query: 17  KTKSWNKDGD------CCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQK 70
           K  SW  D +      C SW G+ C+   G +  L+L+++ + GT               
Sbjct: 49  KLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGIEGTFQ------------- 94

Query: 71  LNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTK 130
                 DF        F   + L +++LS +  SG +P Q   LSKL+  DLS++     
Sbjct: 95  ------DFP-------FISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTN----- 136

Query: 131 FEQHTFNNLA---KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFP 187
              H    ++    NL  L  L L    + SV+PS L N+ S  +  L+L    L G  P
Sbjct: 137 ---HLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMES--MTDLALSQNKLTGSIP 191

Query: 188 IDIFHFPFLRQLTLSDNGLLTGNLPTS--NWSSPLRILDLSITKFSGKIPDTIGNLRDLK 245
             + +   L  L L +N  LTG +P    N  S +  L LS  K +G IP T+GNL++L 
Sbjct: 192 SSLGNLKNLMVLYLYEN-YLTGVIPPELGNMES-MTDLALSQNKLTGSIPSTLGNLKNLM 249

Query: 246 FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ 305
            L LY  Y  G +P  + N++ +T L L  N+ +G  P   GNL  LT +SL     TG 
Sbjct: 250 VLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGG 309

Query: 306 LPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSE 364
           +P    N+  +  LELS N+  G +P     L  L+ L L  N+L G IP  L N+   E
Sbjct: 310 IPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNM---E 366

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD 424
           ++++L L+NNKLTG I     +   +  +    +L+  + ++ +    + S I  L +S 
Sbjct: 367 SMIDLQLNNNKLTGSI--PSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMIN-LDLSQ 423

Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS 484
           NKLTG  P S  N + +E L L  N LSG IP  +AN   L+ L L  N F G  P+   
Sbjct: 424 NKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVC 483

Query: 485 KCYDLVALNLNDNELEGKLPPSLANCGDL-EVLDVGNNKINDAFPYWTATLPRLQVLVLR 543
           K   L  ++L+ N LEG +P SL +C  L     +GN    D F  +    P L  +   
Sbjct: 484 KGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAF-GIYPDLNFIDFS 542

Query: 544 SNSFHGPIYNN--------------------VPSIKRPFPELRIIDISRNGFTGLLP--- 580
            N FHG I +N                    +P+      +L  +D+S N   G LP   
Sbjct: 543 HNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAI 602

Query: 581 -----------------ARYFQSLKAMMHGDNDDIDLDYMNSA---GYDQY---YSMILT 617
                             R    L  + + ++ D+  +  +S     +D +   + M L+
Sbjct: 603 GNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLS 662

Query: 618 YKGVDLEMERV--LNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELT 675
               D  + R+  L   T +DLS+N+ +G IP ++  L SL  L+ SHN L G IP    
Sbjct: 663 RNKFDGSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFE 722

Query: 676 SLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLC 715
            + AL+ +++S N+L GP+P    F     D+   N+GLC
Sbjct: 723 GMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 231/795 (29%), Positives = 350/795 (44%), Gaps = 131/795 (16%)

Query: 18  TKSWN---KDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLA 74
           T +W     +   C+W GI CD+ + +V  L+ + S + G L P   +  L  LQ L+L+
Sbjct: 51  TSTWKINASEATPCNWFGITCDD-SKNVASLNFTRSRVSGQLGPE--IGELKSLQILDLS 107

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL-----SSDIPRT 129
            N+F+GT I S  G  TKL  L+LS + FS  +P  +  L +L  L L     + ++P +
Sbjct: 108 TNNFSGT-IPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPES 166

Query: 130 KFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPID 189
            F           + +L+ L LD   +   +P S+ +  +  L+ LS+      G  P  
Sbjct: 167 LFR----------IPKLQVLYLDYNNLTGPIPQSIGD--AKELVELSMYANQFSGNIPES 214

Query: 190 IFHFPFLRQLTLSDNGLLTGNLPTS---------------NWSSPLR----------ILD 224
           I +   L+ L L  N L+ G+LP S               +   P+R           LD
Sbjct: 215 IGNSSSLQILYLHRNKLV-GSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLD 273

Query: 225 LSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD 284
           LS  +F G +P  +GN   L  L +      G +P+SL  LK LT+LNL +N+ SG  P 
Sbjct: 274 LSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPA 333

Query: 285 VFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLK 343
             GN S L  + L      G +P +   L +L  LEL  N+F G++P        L+ L 
Sbjct: 334 ELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLL 393

Query: 344 LGGNFLDGRIP-----------SWLFN----------LSTSENLVELDLSNNKLTGQIFQ 382
           +  N L G +P           + LFN          L  + +L E+D   NKLTG+I  
Sbjct: 394 VYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEI-- 451

Query: 383 LDQWPVERISSVELRHLDVQSNLLQ-RLPFILS--SRIRFLSVSDNKLTGEFPSSICNLS 439
               P       +LR L++ SNLL   +P  +     IR   + +N L+G  P       
Sbjct: 452 ----PPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLPE-FSQDH 506

Query: 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499
           ++ +L+ ++N+  G IP  L +  +LS ++L +N+F G IP       +L  +NL+ N L
Sbjct: 507 SLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLL 566

Query: 500 EGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIK 559
           EG LP  L+NC  LE  DVG N +N + P   +    L  LVL  N F G I   +P +K
Sbjct: 567 EGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPELK 626

Query: 560 RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYK 619
           +    L  + I+RN F G +P+                                      
Sbjct: 627 K----LSTLQIARNAFGGEIPS-------------------------------------- 644

Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
                +  + ++   +DLS N   G IP ++G L  L  LN S+N L G + V L  LT+
Sbjct: 645 ----SIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSLSV-LKGLTS 699

Query: 680 LSVLNLSFNQLVGPIPQGKQFDSF-QNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDD 738
           L  +++S NQ  GPIP   +     +  SF GN  LC    +   SN         ++  
Sbjct: 700 LLHVDVSNNQFTGPIPDNLEGQLLSEPSSFSGNPNLC-IPHSFSASNNSRSALKYCKDQS 758

Query: 739 TSSSWAWFDWKIVVM 753
            S       W+IV++
Sbjct: 759 KSRKSGLSTWQIVLI 773

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  229 bits (585), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 231/754 (30%), Positives = 338/754 (44%), Gaps = 102/754 (13%)

Query: 30  WDGIICDEMTGHVI-GLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFG 88
           W G+ICD ++G+V+  L+LS+S L G L   S +  L  L  L+L+ N F+G  + S  G
Sbjct: 66  WFGVICD-LSGNVVETLNLSASGLSGQL--GSEIGELKSLVTLDLSLNSFSGL-LPSTLG 121

Query: 89  QFTKLTHLNLSFSYFSGIVPSQISRLSKLVAL-----DLSSDIPRTKFE-------QHTF 136
             T L +L+LS + FSG VP     L  L  L     +LS  IP +          + ++
Sbjct: 122 NCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSY 181

Query: 137 NNLAK-------NLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPID 189
           NNL+        N ++L YL L+N ++   +P+SL  L +  L  L + N  L G     
Sbjct: 182 NNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLEN--LGELFVSNNSLGGRLHFG 239

Query: 190 IFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249
             +   L  L LS N    G  P     S L  L +     +G IP ++G LR +  +DL
Sbjct: 240 SSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDL 299

Query: 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS 309
                 G +P  L N   L  L L DNQ  GE P     L KL  + L     +G++P+ 
Sbjct: 300 SDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIG 359

Query: 310 AFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVE 368
            + +  L+ + +  N   G+LP   + L  L  L L  N   G IP    +L  + +L E
Sbjct: 360 IWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIP---MSLGLNRSLEE 416

Query: 369 LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQ-RLPFILS--SRIRFLSVSDN 425
           +DL  N+ TG+I      P       +LR   + SN L  ++P  +     +  + + DN
Sbjct: 417 VDLLGNRFTGEI------PPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDN 470

Query: 426 KLTG---EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI 482
           KL+G   EFP S+    ++ Y+NL +NS  G IP+ L +  +L  +DL +N+  G IP  
Sbjct: 471 KLSGVLPEFPESL----SLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPE 526

Query: 483 FSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVL 542
                 L  LNL+ N LEG LP  L+ C  L   DVG+N +N + P    +   L  LVL
Sbjct: 527 LGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVL 586

Query: 543 RSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602
             N+F G I    P        L  + I+RN F G +P+     LK++ +G         
Sbjct: 587 SDNNFLGAI----PQFLAELDRLSDLRIARNAFGGKIPSS-VGLLKSLRYG--------- 632

Query: 603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFS 662
                                           +DLS N F G IP  +G L +L+ LN S
Sbjct: 633 --------------------------------LDLSANVFTGEIPTTLGALINLERLNIS 660

Query: 663 HNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQ 722
           +N L G + V L SL +L+ +++S+NQ  GPIP     +S +   F GN  LC  A    
Sbjct: 661 NNKLTGPLSV-LQSLKSLNQVDVSYNQFTGPIPVNLLSNSSK---FSGNPDLCIQA---- 712

Query: 723 CSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYG 756
             +Y V      E            WKI ++  G
Sbjct: 713 --SYSVSAIIRKEFKSCKGQVKLSTWKIALIAAG 744

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  226 bits (577), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 206/707 (29%), Positives = 329/707 (46%), Gaps = 59/707 (8%)

Query: 20  SWNK-DGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDF 78
           SWN+ D + C+W GI C  +   V  +DL+   L GTL P   +  LH L+KLN++ N  
Sbjct: 47  SWNQLDSNPCNWTGIACTHLR-TVTSVDLNGMNLSGTLSP--LICKLHGLRKLNVSTNFI 103

Query: 79  NGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNN 138
           +G  I  +      L  L+L  + F G++P Q++ +  L  L L         E + F +
Sbjct: 104 SG-PIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLC--------ENYLFGS 154

Query: 139 LAK---NLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF 195
           + +   NL+ L+ L++ +  +  V+P S+  L    +I    G     G  P +I     
Sbjct: 155 IPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRII--RAGRNGFSGVIPSEISGCES 212

Query: 196 LRQLTLSDNGLLTGNLPTS-NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF 254
           L+ L L++N LL G+LP        L  L L   + SG+IP ++GN+  L+ L L+  YF
Sbjct: 213 LKVLGLAEN-LLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYF 271

Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLT 314
            G +P  +  L ++  L L  NQ +GE P   GNL     I  +    TG +P    ++ 
Sbjct: 272 TGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHIL 331

Query: 315 QLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN 373
            L LL L  N  +G +P     L  L  L L  N L+G IP  L  L     LV+L L +
Sbjct: 332 NLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPY---LVDLQLFD 388

Query: 374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR-LP--FILSSRIRFLSVSDNKLTGE 430
           N+L G+I  L  +            LD+ +N L   +P  F     +  LS+  NKL+G 
Sbjct: 389 NQLEGKIPPLIGF------YSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGN 442

Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
            P  +    ++  L L +N L+G +P  L N  +L+ L+L +N   G+I     K  +L 
Sbjct: 443 IPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLE 502

Query: 491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP 550
            L L +N   G++PP + N   +   ++ +N++    P    +   +Q L L  N F G 
Sbjct: 503 RLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGY 562

Query: 551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARY--FQSLKAMMHGDNDDIDLDYMNSAGY 608
           I   +  +      L I+ +S N  TG +P  +     L  +  G N             
Sbjct: 563 IAQELGQLVY----LEILRLSDNRLTGEIPHSFGDLTRLMELQLGGN------------- 605

Query: 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG 668
                  L  + + +E+ ++ ++  ++++S+N   G IP  +G L  L++L  + N L G
Sbjct: 606 -------LLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSG 658

Query: 669 EIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLC 715
           EIP  + +L +L + N+S N LVG +P    F    + +F GN GLC
Sbjct: 659 EIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  226 bits (576), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 231/767 (30%), Positives = 333/767 (43%), Gaps = 74/767 (9%)

Query: 19  KSWNK-DGDCCSWDGIICDEMTG--HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLAC 75
           ++WN  D   C W G++C   +    V+ L+LSS  L G L P  ++  L HL++L+L+ 
Sbjct: 49  RNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSP--SIGGLVHLKQLDLSY 106

Query: 76  NDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVAL-----DLSSDIPRTK 130
           N  +G KI    G  + L  L L+ + F G +P +I +L  L  L      +S  +P   
Sbjct: 107 NGLSG-KIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVE- 164

Query: 131 FEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDI 190
                      NL  L  L+  +  +   +P S+ NL    L S   G   + G  P +I
Sbjct: 165 ---------IGNLLSLSQLVTYSNNISGQLPRSIGNLKR--LTSFRAGQNMISGSLPSEI 213

Query: 191 FHFPFLRQLTLSDNGLLTGNLPTS-NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249
                L  L L+ N L +G LP        L  + L   +FSG IP  I N   L+ L L
Sbjct: 214 GGCESLVMLGLAQNQL-SGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLAL 272

Query: 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS 309
           Y     G +P  L +L+ L  L L  N  +G  P   GNLS    I  +    TG++PL 
Sbjct: 273 YKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLE 332

Query: 310 AFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVE 368
             N+  L LL L  NQ  G +P   S L  LS L L  N L G IP           L  
Sbjct: 333 LGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIP---LGFQYLRGLFM 389

Query: 369 LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQ-RLP--FILSSRIRFLSVSDN 425
           L L  N L+G I     W        +L  LD+  N L  R+P    L S +  L++  N
Sbjct: 390 LQLFQNSLSGTIPPKLGW------YSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTN 443

Query: 426 KLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK 485
            L+G  P+ I    T+  L L+ N+L G  P  L    +++ ++L +N+FRGSIP+    
Sbjct: 444 NLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGN 503

Query: 486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
           C  L  L L DN   G+LP  +     L  L++ +NK+    P        LQ L +  N
Sbjct: 504 CSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCN 563

Query: 546 SFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARY--FQSLKAMMHGDNDDIDLDYM 603
           +F G + + V S+     +L ++ +S N  +G +P        L  +  G N        
Sbjct: 564 NFSGTLPSEVGSLY----QLELLKLSNNNLSGTIPVALGNLSRLTELQMGGN-------- 611

Query: 604 NSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH 663
                       L    +  E+  +  +   ++LS N+  G IP E+  L  L+ L  ++
Sbjct: 612 ------------LFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNN 659

Query: 664 NILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQC 723
           N L GEIP    +L++L   N S+N L GPIP      +    SFIGN GLCG  L  QC
Sbjct: 660 NNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPL-NQC 715

Query: 724 SNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLAF 770
               +   P      T         KI+ +     VI G+SL  +A 
Sbjct: 716 ----IQTQPFAPSQSTGKPGGMRSSKIIAI--TAAVIGGVSLMLIAL 756

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 207/714 (28%), Positives = 329/714 (46%), Gaps = 113/714 (15%)

Query: 88  GQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELR 147
           G F+ +T ++LS +  +G  PS I RLS L  L L ++   +        N+A     L+
Sbjct: 57  GDFSSVTSVDLSSANLAGPFPSVICRLSNLAHLSLYNNSINSTLPL----NIAA-CKSLQ 111

Query: 148 YLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLL 207
            L L    +   +P +L ++   +L+ L L      G+ P     F  L  L+L  N LL
Sbjct: 112 TLDLSQNLLTGELPQTLADI--PTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYN-LL 168

Query: 208 TGNLPT--SNWSSPLRILDLSITKFS-GKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSN 264
            G +P    N S+ L++L+LS   FS  +IP   GNL +L+ + L  C+  GQ+P SL  
Sbjct: 169 DGTIPPFLGNIST-LKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQ 227

Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN 324
           L +L  L+L  N   G  P   G L+ + +I L + + TG++P    NL  L LL+ S N
Sbjct: 228 LSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMN 287

Query: 325 QFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
           Q  G++P     +PL  L L  N L+G +P+   +++ S NL E+ +  N+LTG + +  
Sbjct: 288 QLTGKIPDELCRVPLESLNLYENNLEGELPA---SIALSPNLYEIRIFGNRLTGGLPK-- 342

Query: 385 QWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
                                       L+S +R+L VS+N+ +G+ P+ +C    +E L
Sbjct: 343 -------------------------DLGLNSPLRWLDVSENEFSGDLPADLCAKGELEEL 377

Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
            + +NS SG+IP+ LA+  SL+ + L  N+F GS+P  F     +  L L +N   G++ 
Sbjct: 378 LIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEIS 437

Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPE 564
            S+    +L +L + NN+   + P    +L  L  L    N F G + +++ S+     E
Sbjct: 438 KSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSLMSLG----E 493

Query: 565 LRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLE 624
           L  +D+  N F+G                                +  S I ++K ++  
Sbjct: 494 LGTLDLHGNQFSG--------------------------------ELTSGIKSWKKLN-- 519

Query: 625 MERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLN 684
                     ++L++N F G IP E+G LS L  L+ S N+  G+IPV L SL  L+ LN
Sbjct: 520 ---------ELNLADNEFTGKIPDEIGSLSVLNYLDLSGNMFSGKIPVSLQSL-KLNQLN 569

Query: 685 LSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWA 744
           LS+N+L G +P     D ++N SFIGN GLCG  +   C +         E +     + 
Sbjct: 570 LSYNRLSGDLPPSLAKDMYKN-SFIGNPGLCG-DIKGLCGS---------ENEAKKRGYV 618

Query: 745 WFDWKIVVMGYG---CGVIWGLSLGYLAFSTGKP----RWLMM----MMFERHD 787
           W    I V+       GV W     Y  F   +     +W +M    + F  H+
Sbjct: 619 WLLRSIFVLAAMVLLAGVAW-FYFKYRTFKKARAMERSKWTLMSFHKLGFSEHE 671

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	801
225459979	979	PREDICTED: receptor-like protein 12-like	0.982	0.803	0.436	1e-179
359493544	978	PREDICTED: receptor-like protein 12-like	0.983	0.805	0.443	1e-179
359493539	1001	PREDICTED: receptor-like protein 12-like	0.973	0.779	0.426	1e-170
224116970	921	predicted protein [Populus trichocarpa]	0.955	0.830	0.435	1e-170
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.972	0.790	0.432	1e-169
225455498	980	PREDICTED: receptor-like protein 12-like	0.982	0.803	0.418	1e-169
147793123	951	hypothetical protein VITISV_032542 [Viti	0.946	0.797	0.419	1e-162
224099671	842	predicted protein [Populus trichocarpa]	0.921	0.876	0.439	1e-158
147773180	870	hypothetical protein VITISV_024119 [Viti	0.903	0.832	0.413	1e-157
224121020	861	predicted protein [Populus trichocarpa]	0.950	0.883	0.449	1e-156

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 409/938 (43%), Positives = 529/938 (56%), Gaps = 151/938 (16%)

Query: 1   MDASASSHCD--AAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHP 58
           +D S+   CD     +YPKT+SW K  DCCSWDG+ CD +TGHVIGLDLS SWL GT+H 
Sbjct: 49  IDNSSFWGCDYYGVTSYPKTESWKKGSDCCSWDGVTCDRVTGHVIGLDLSCSWLYGTIHS 108

Query: 59  NSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV 118
           NSTLFL  HL++LNLA NDFNG+ +S+ FG+F+ LTHLNLS S FSG++  +IS L+ LV
Sbjct: 109 NSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLNLSESLFSGLISPEISHLANLV 168

Query: 119 ALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG 178
           +LDLS +    +F  H FN+L  NLT+L+ L L  + + SV P+SLLN SS  LISL L 
Sbjct: 169 SLDLSGN--GAEFAPHGFNSLLLNLTKLQKLHLGGISISSVFPNSLLNQSS--LISLDLS 224

Query: 179 NCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTI 238
           +C L G F     H P L  L L  N  L GN P  + ++ L  L L+ T FSG++P +I
Sbjct: 225 DCGLHGSFHDHDIHLPKLEVLNLWGNNALNGNFPRFSENNSLLELVLASTNFSGELPASI 284

Query: 239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298
           GNL+ LK LDL +C F G +P SL NLKQ+T LNL  N FSG+ P++F NL  L  + L+
Sbjct: 285 GNLKSLKTLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSGKIPNIFNNLRNLISLGLS 344

Query: 299 HLNFTGQLPLSAFNLTQL--------------------------SLLELSRNQFVGQLPC 332
           + NF+G  P S  NLT L                          S + L  N F G +P 
Sbjct: 345 NNNFSGHFPPSIGNLTNLYELDFSNNQLEGVIHSHVNEFSFSSLSYVNLGYNLFNGTIPS 404

Query: 333 ------HASCLPLSHLKLGG-----------------NFLDGRIPSWLFNL--------- 360
                     L LSH KL G                 N L G IPS +F L         
Sbjct: 405 WLYTLSSLVVLDLSHNKLTGHIDEFQFDSLENIYLNMNELHGPIPSSIFKLVNLRYLYLS 464

Query: 361 -------------STSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRH--------- 398
                            NL+ELDLSNN L           +  I S++L +         
Sbjct: 465 SNNLSEVLETNKFGNLRNLIELDLSNNMLLLTTSGNSNSILPNIESLDLSNNKISGVWSW 524

Query: 399 ------------------------------LDVQSNLLQR-LPFILSSRIRFLSVSDNKL 427
                                         LD+ SNLLQ  LP   +S   F SVS NKL
Sbjct: 525 NMGNDTLWYLNLSYNSISGFKMLPWKNIGILDLHSNLLQGPLPTPPNSTF-FFSVSHNKL 583

Query: 428 TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIFSKC 486
           +GE  S IC  S++E L+LS+N+LSG +P CL NF   LS+L+LR+N+F G+IPQ F K 
Sbjct: 584 SGEISSLICRASSMEILDLSDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKG 643

Query: 487 YDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNS 546
             +  L+ NDN+L+G +P SL  C  LEVLD+GNNKIND FP+W  TL +LQVLVLRSNS
Sbjct: 644 NAIRDLDFNDNQLDGLVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNS 703

Query: 547 FHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSA 606
           FHG I ++   IK PF  LRIID++ N F G LP  Y +SLKA+M+ +  ++   YM + 
Sbjct: 704 FHGHIRHS--KIKSPFMSLRIIDLAHNDFEGDLPELYLRSLKAIMNVNEGNMTRKYMGNN 761

Query: 607 GYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNIL 666
            Y    S+++T KG+++E  ++LN FTTIDLS+N+F+G IPK +G L+SL+ LN SHN L
Sbjct: 762 YYQD--SIMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNL 819

Query: 667 RGEIPV------------------------ELTSLTALSVLNLSFNQLVGPIPQGKQFDS 702
            G IP                         ELTSLT L VLNLS N L G IP+G QF++
Sbjct: 820 GGHIPSPLGNLKSLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFET 879

Query: 703 FQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWG 762
           F NDS+  N GLCGF L+++C+  E      P ++  +     FDWKI +MGYGCG++ G
Sbjct: 880 FGNDSYNENSGLCGFPLSKKCTADETLE---PSKEANTEFDGGFDWKITLMGYGCGLVIG 936

Query: 763 LSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQR 800
           LSLG L F TGKP WL  M+ E +  + + R K   +R
Sbjct: 937 LSLGCLVFLTGKPEWLTRMV-EENIHKTITRSKRSTRR 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 416/937 (44%), Positives = 524/937 (55%), Gaps = 149/937 (15%)

Query: 1   MDASASSHCDA--AVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHP 58
           +D S+S  CD+    +YPKT+SW K  DCCSWDG+ CD +TGH+IGLDLS SWL G +H 
Sbjct: 49  IDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWVTGHIIGLDLSCSWLFGIIHS 108

Query: 59  NSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV 118
           NSTLFL  HL++LNLA NDF+G+ +S  FG+F+ LTHLNLS S FSG++ S+IS LS LV
Sbjct: 109 NSTLFLFPHLRRLNLASNDFSGSSVSVGFGRFSSLTHLNLSDSGFSGLISSEISHLSNLV 168

Query: 119 ALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG 178
           +LDLS +    +F  H FN+L +NLT+L+ L L  + + SV P SLLN SS   + LS  
Sbjct: 169 SLDLSWN-SDAEFAPHGFNSLVQNLTKLQKLHLRGISISSVFPDSLLNRSSLISLDLSS- 226

Query: 179 NCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTI 238
            C L G FP    HFP L  L L  N  L+GN P  + ++ L  L LS   FSG++P +I
Sbjct: 227 -CGLHGRFPDHDIHFPKLEVLDLQGNNDLSGNFPRFSENNSLMELYLSSKNFSGELPASI 285

Query: 239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298
           GNL+ L+ L +  C F G +PASL NL Q+T LNL++N FSG+ P+VF NL  L  + L 
Sbjct: 286 GNLKSLQTLYISNCEFSGSIPASLENLTQITSLNLDENLFSGKIPNVFSNLRNLISLHLH 345

Query: 299 HLNFTGQLPLSAFNLTQLSLLELSRNQ------------------------FVGQLPCHA 334
             NF+GQLP S  NLT L  L L  NQ                        F G +P   
Sbjct: 346 GNNFSGQLPSSIGNLTNLQGLNLYDNQLEGVIPSFVNGFLSLSYVDLGYNLFNGIIPSWL 405

Query: 335 SCLP------LSHLKLGG-----------------NFLDGRIPSWLF------------- 358
             LP      L H KL G                 N L G IPS +F             
Sbjct: 406 YALPSLVVLYLDHNKLTGHIGEFQSDSLELICLKMNKLHGPIPSSIFKLVNLRYLHLSSN 465

Query: 359 ---------NLSTSENLVELDLSNNKLTG-----------QIFQLD----------QWPV 388
                    N     NL  LDLSNN L+             I +LD           W +
Sbjct: 466 NLSGVLETSNFGKLRNLTSLDLSNNMLSSITSSNSNSILPSIQRLDFSNNNISGVWSWNM 525

Query: 389 ER------------ISSVE------LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE 430
            +            IS  E      L  LD+ SNLLQ     L +   F SVS NKL+GE
Sbjct: 526 GKNTLQYLNLSYNSISGFEMLPWENLYTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGE 585

Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIFSKCYDL 489
             S IC  S++   +LSNN+LSG++P CL NF   L +L+LR+NQF G IPQ F K   +
Sbjct: 586 ISSLICKASSMRIFDLSNNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAI 645

Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549
             L+ NDN+LEG +P SL  C  LEVLD+GNNKIND FP+W  TLP LQVLVLRSNSFHG
Sbjct: 646 RNLDFNDNQLEGPVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHG 705

Query: 550 PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD 609
            I      IK PF  LRIID++ N F G LP  Y +SLKA+M+ D  ++   YM     +
Sbjct: 706 HI--GRSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMTRKYMG----E 759

Query: 610 QYY--SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR 667
           +YY  S+++T K +++E  ++LN FTTIDLS+N+F+G IPK +G L+SL+ LN SHN L 
Sbjct: 760 EYYQDSIVVTIKRLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLA 819

Query: 668 GEIPV------------------------ELTSLTALSVLNLSFNQLVGPIPQGKQFDSF 703
           G IP                         ELTSLT L VLNLS N L G IPQG QFD+F
Sbjct: 820 GHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTF 879

Query: 704 QNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGL 763
            NDS+  N GLCGF L+++C   E P +    + +       FDWKI +MGYGCG+I GL
Sbjct: 880 GNDSYNENSGLCGFPLSKKCIIDETPESSKETDAEFDGG---FDWKITLMGYGCGLIIGL 936

Query: 764 SLGYLAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQR 800
           SLG L F TGKP+WL  M+ E    +  R  K   +R
Sbjct: 937 SLGCLIFLTGKPKWLTTMVEENIHKKITRSKKGTCRR 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 409/958 (42%), Positives = 528/958 (55%), Gaps = 178/958 (18%)

Query: 1   MDASASSHCDA--AVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHP 58
           +D S+S  CD+    +YPKT+SW K  DCCSWDG+ CD +TGH+IGLDLS S L GT+H 
Sbjct: 48  IDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWVTGHIIGLDLSCSRLFGTIHS 107

Query: 59  NSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV 118
           N+TLFLL HLQ+LNLA N+FNG+ IS+ FG+F+ LTH NLS+S FSG++  +IS LS LV
Sbjct: 108 NTTLFLLLHLQRLNLAFNNFNGSSISAGFGRFSSLTHFNLSYSGFSGLIAPEISHLSTLV 167

Query: 119 ALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG 178
           +LDLS +    +F  H FN+L +NLT+L+ L L  + + SV P+SLLN SS  LIS+ L 
Sbjct: 168 SLDLSENY-GAEFAPHGFNSLVQNLTKLQKLHLRGISISSVFPNSLLNRSS--LISIDLS 224

Query: 179 NCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP--- 235
            C L G FP    H P L  L L  N  L+GN P  + ++ L  LDLS T  SG++P   
Sbjct: 225 GCGLHGRFPDHDIHLPKLEVLDLWRNDDLSGNFPRFSENNSLMELDLSFTNLSGELPASI 284

Query: 236 ---------------------DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLE 274
                                 +IGNL+ L+ LDL  C F G +P S+ NLK L  L+L 
Sbjct: 285 GNLKSLQTLDLSGCEFSGFIHTSIGNLKSLQTLDLSGCEFSGFIPTSIGNLKSLQTLDLS 344

Query: 275 DNQFSGEFPDVFGNLSKLTRISLAHL------------------------NFTGQLPLSA 310
           D +FSG  P   GNL  L  + L++                         NF+GQLP S 
Sbjct: 345 DCEFSGSIPTSIGNLKSLQTLDLSNCEFLGSIPTSIGNLKSLRSLYLFSNNFSGQLPPSI 404

Query: 311 FNLTQLSLLELSRNQFVGQLPCHASCLP------LSHLKLGG-----------------N 347
            NLT L  L  S N F G +P     LP      LSH KL G                 N
Sbjct: 405 GNLTNLQNLRFSNNLFNGTIPSQLYTLPSLVNLDLSHKKLTGHIGEFQFDSLEYIDLSMN 464

Query: 348 FLDGRIPSWLFNLSTSENLV---------------------------------------- 367
            L G IPS +F L+  E L                                         
Sbjct: 465 ELHGPIPSSIFKLANLEFLYLYSNNLSGVLETSNFGKLRNLTLLVLSNNMLSLITSGNSN 524

Query: 368 -------ELDLSNNKLTGQIFQLDQWPVER------------ISSVEL------RHLDVQ 402
                   LDLSNNK++G    +  W + +            IS  E+        LD+ 
Sbjct: 525 SILPYIERLDLSNNKISG----IWSWNMGKDTLLYLNLSYNIISGFEMLPWKNMHILDLH 580

Query: 403 SNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANF 462
           SNLLQ    I  +   F SVS NKL+GE    IC +S++  L+LS+N+LSGM+P CL NF
Sbjct: 581 SNLLQGPLPIPPNSTFFFSVSHNKLSGEISPLICKVSSMGVLDLSSNNLSGMLPHCLGNF 640

Query: 463 DS-LSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521
              LS+L+LR+N+F G+IPQ F K   +  L+ NDN+LEG +P SL     LEVLD+GNN
Sbjct: 641 SKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLVPRSLIIYRKLEVLDLGNN 700

Query: 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPA 581
           KIND FP+W  TLP LQVLVLRSNSFHG I      IK PF  LRIID++ N F G LP 
Sbjct: 701 KINDTFPHWLRTLPELQVLVLRSNSFHGHI--GFSKIKSPFMSLRIIDLAHNDFEGDLPE 758

Query: 582 RYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNR 641
            Y +SLKA+M+ D  ++   YM    Y    S+ +T KG+D+E+ ++LN FTT+DLS+N+
Sbjct: 759 MYLRSLKAIMNIDEGNMARKYMGEYYYQD--SITVTTKGLDVELVKILNTFTTVDLSSNK 816

Query: 642 FEGMIPKEVGKLSSLKLLNFSHNILRG------------------------EIPVELTSL 677
           F+G IPK +G L+SL+ LN SHN L G                         IP +LTSL
Sbjct: 817 FQGEIPKSIGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLTSL 876

Query: 678 TALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEED 737
           T L VLNLS N L G IP+G QFD+F NDS+  N GLCGF L+++C   E P    P ++
Sbjct: 877 TFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIADETPE---PSKE 933

Query: 738 DTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIK 795
             +     FDWKI +MGYGCG++ GLSLG L F TGKP+W + ++ E +  +K+RR K
Sbjct: 934 ADAKFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPKWFVWII-EDNIHKKIRRSK 990

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 406/933 (43%), Positives = 525/933 (56%), Gaps = 168/933 (18%)

Query: 20  SWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFN 79
           SW    DCCSWDG+ C  +TGHVI LDLS S L G L  NS+LF L HL++LNLA N FN
Sbjct: 3   SWKSGTDCCSWDGVACHGVTGHVIALDLSCSGLRGNLSSNSSLFHLSHLRRLNLAFNYFN 62

Query: 80  GTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNL 139
            + I   FG F+ LTHLNLS ++FSG VP++IS LSKL++LDLS + P    E      +
Sbjct: 63  RSSIPPEFGMFSSLTHLNLSSTWFSGQVPTEISHLSKLISLDLSLNEPLI-LEAPAMKMI 121

Query: 140 AKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQL 199
            +NLT +R + LD + M S V    L   S+SL SLSL  C L+G+FP +IFH P L+ L
Sbjct: 122 VQNLTLVREIFLDYINM-SSVDLGSLMNLSSSLTSLSLNLCGLQGQFPENIFHLPNLQLL 180

Query: 200 TLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVP 259
           +L  N  L G LP SNWSS L +L L  T FSG +P+ IGNL  +K LDL  C F G VP
Sbjct: 181 SLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLGNCAFYGSVP 240

Query: 260 ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLL 319
           ASL NL+QL  L+L +N ++G+ PDVFGNLSKL  +SL   NF+G LP S FNLT+L  L
Sbjct: 241 ASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNFSGMLPSSVFNLTELLRL 300

Query: 320 ELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378
           +LS+NQ  G LP H   L  +++L L  N L G IPS LF L +   LV  +L+NN LTG
Sbjct: 301 DLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSGTIPSCLFGLPS---LVWFNLNNNHLTG 357

Query: 379 QIFQ----LDQWPVERISS-VELRHLDVQSNLL--------------------------- 406
           ++ +    ++      IS  V L + DV SN L                           
Sbjct: 358 ELGEHCNKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNMKNLWGLDLSHNSLSV 417

Query: 407 -----------QRLPFILSS--------------RIRFLSVSDNKLTGEFPS--SICNLS 439
                      Q     LSS              ++ FLS+S N++ GE P   S   + 
Sbjct: 418 VTNNNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHGEIPKWLSAKGMQ 477

Query: 440 TIEYLNLS-----------------------------------------NNSLSGMIP-- 456
           +++YL+LS                                         NN L+G IP  
Sbjct: 478 SLQYLDLSHNFLTIVNELPPSLQYLDLTSNLLQQPFPILPQSMYILLIANNKLTGEIPPW 537

Query: 457 ----------------------QCLANFDS-LSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
                                 QCL NF + LS+L+LR N F G+IP  F++   + +L+
Sbjct: 538 ICNITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLD 597

Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
           LN NELEG LP SLANC  LEVLD+GNN IND+FP W  TLP+LQVLVLRSN  HG I N
Sbjct: 598 LNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLRSNRLHGSIGN 657

Query: 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDND-DIDLDYMNSAGYDQYY 612
             P+   PF  LRIID+S N F GLLP +Y  + +AM   D +      Y+    Y    
Sbjct: 658 --PTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDGEVKATPKYIGEIYYQD-- 713

Query: 613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE--- 669
           S++LT KG ++ MER+L IFTTIDLS+NRFEG IPKEVG LSSL +LN S N + G+   
Sbjct: 714 SIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISRNSVTGQIPS 773

Query: 670 ---------------------IPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSF 708
                                IP +LT LT L+VLNLS+NQLVGPIP G QFD+FQNDS+
Sbjct: 774 SLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQFDTFQNDSY 833

Query: 709 IGNLGLCGFALTQQCSNYEVP-PAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGY 767
           +GNL LCGF L+ +CS    P P P  E++D +S    F+WK  ++GYGCG++ GLS+GY
Sbjct: 834 VGNLRLCGFPLSVKCSGDVAPQPPPFQEKEDPAS---LFNWKFAMIGYGCGLVIGLSVGY 890

Query: 768 LAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQR 800
           + F+TGKP+W +     + + E+ + ++ R +R
Sbjct: 891 IVFTTGKPQWFV----RKVEVEQKKWLRRRTKR 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 405/936 (43%), Positives = 515/936 (55%), Gaps = 157/936 (16%)

Query: 1   MDASASSHCDA--AVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHP 58
           +D S+S +CD      YPKT+SW K  DCCSWDG+ CD +TGHVI LDLS SWL GT+H 
Sbjct: 51  IDNSSSWYCDYYDVTFYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSCSWLFGTIHS 110

Query: 59  NSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV 118
           N+TLF L HLQ+LNLA N+F G+ IS+ FG+F+ LTHLNL  S FSG +  +IS LS LV
Sbjct: 111 NTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSSLTHLNLCDSEFSGPISPEISHLSNLV 170

Query: 119 ALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG 178
           +LDLS +I  T+F  H F++L +NLT+L+ L L  + + S+ P  LLN   ASL+SL L 
Sbjct: 171 SLDLSWNID-TEFAPHGFDSLVQNLTKLQKLHLGGISISSIFPKFLLNW--ASLVSLDLL 227

Query: 179 NCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTI 238
           +  L G FP    H P L  L L  N  L+G  P  + ++ L  L LS   FSG++P +I
Sbjct: 228 DGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSENNSLTELYLSSKNFSGELPASI 287

Query: 239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSK------- 291
           GNL+ LK L L+ C F G +P+S+ NLK L VL +   +FSG  P   GNL++       
Sbjct: 288 GNLKSLKILVLHNCGFSGSIPSSIGNLKSLMVLAMPGCEFSGSIPASLGNLTQIIALHLD 347

Query: 292 --------------------LTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN--QFVGQ 329
                               L  + LA  NF+GQLP S  NLT L  L  S N   F G 
Sbjct: 348 RNHFSGKISKVINFFNNFRNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNFNMFNGT 407

Query: 330 LPCHASCLP------LSHLKLGG-----------------NFLDGRIPSWLF-------- 358
           +P     +P      LSH KL G                 N L G IP  +F        
Sbjct: 408 IPSWLYTMPSLVQLDLSHNKLTGHIGEFQFDSLEYIDLSMNELHGSIPGSIFKLINLRYL 467

Query: 359 --------------NLSTSENLVELDLSNNKLT---------------------GQIFQL 383
                         N     NL  LDLSNN L+                       I  +
Sbjct: 468 FLSSNNFSGVLETSNFGKLRNLTSLDLSNNMLSLTTSDDSKSMLPYIESLDLSNNNISGI 527

Query: 384 DQWPVER------------ISSVE------LRHLDVQSNLLQR-LPFILSSRIRFLSVSD 424
             W + +            IS  E      L  LD+ SNLLQ  LP   +S   F SVS 
Sbjct: 528 WSWNMGKNTLQYLNLSYNLISGFEMLPWKNLYILDLHSNLLQGPLPTPPNSTF-FFSVSH 586

Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIF 483
           NKL+GE  S  C  S++  L+LSNN+LSGM+P CL NF   LS+L+L +N+F G IPQ F
Sbjct: 587 NKLSGEILSLFCKASSMRILDLSNNNLSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTF 646

Query: 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543
            K   +  L+ N N+LEG LP SL  C  LEVLD+GNNKIND FP+W  TLP LQVLVLR
Sbjct: 647 LKGNAIRNLDFNGNQLEGLLPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLR 706

Query: 544 SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM 603
           SNSFHG I      IK PF  LRIID++ N F G LP  Y +SLKA M+ D  ++   YM
Sbjct: 707 SNSFHGHI--GCSKIKSPFMSLRIIDLAYNDFEGDLPEMYLRSLKATMNVDEGNMTRKYM 764

Query: 604 NSAGYDQYY--SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNF 661
                D YY  S+++T KG+++E  ++LN FTTIDLS+N+F+G IPK +G L+SL+ LN 
Sbjct: 765 G----DSYYQDSVMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNL 820

Query: 662 SHNILRGEIPV------------------------ELTSLTALSVLNLSFNQLVGPIPQG 697
           SHN L G IP                         ELTSLT L VLNLS N L G IP+G
Sbjct: 821 SHNSLAGHIPSSFKNLKLLESLDLSSNKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRG 880

Query: 698 KQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGC 757
            QFD+F NDS+  N GLCGF L+++C   E   +    +++       FDWKI +MGYGC
Sbjct: 881 NQFDTFGNDSYSENSGLCGFPLSKKCITDEASESSKEADEEFDGG---FDWKITLMGYGC 937

Query: 758 GVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRR 793
           G++ GLSLG L F TGKP+  +  + E +  +K+RR
Sbjct: 938 GLVIGLSLGCLIFLTGKPKRFVWFI-EENIHKKIRR 972

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 390/933 (41%), Positives = 514/933 (55%), Gaps = 146/933 (15%)

Query: 3   ASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTL 62
           +S   H     +YPKT+SW K  DCCSWDG+ CD +TGHVI LDLS SWL GT+H N+TL
Sbjct: 53  SSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSCSWLFGTIHSNTTL 112

Query: 63  FLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL 122
           FLL H+Q+LNLA N+F+G+ IS  FG+F+ LTHLNLS S FSG++  +IS LS LV+LDL
Sbjct: 113 FLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNLSDSGFSGLISPEISHLSNLVSLDL 172

Query: 123 SSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFL 182
           S +   T+F  H FN+L +NLT+L+ L L  + + SV P+SLLN SS   + LS   C L
Sbjct: 173 SWN-SDTEFAPHGFNSLVQNLTKLQKLHLGGISISSVFPNSLLNRSSLISLHLSS--CGL 229

Query: 183 RGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLR 242
            G FP    H P L  L L  N  L+GN P  N ++ L  L LS   FSG++P +IGNL+
Sbjct: 230 HGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSLTELYLSSKNFSGELPASIGNLK 289

Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVF---------------- 286
            L+ LDL  C F G +PASL NL Q+T LNL  N FSG+ P++F                
Sbjct: 290 SLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSGKIPNIFNNLRNLISIGLSNNHF 349

Query: 287 --------GNLSKLTRISLAHLNFTGQLP--LSAFNLTQLSLLELSRNQFVGQLPC---- 332
                   GNL+ L  +  ++    G +P  ++ F  + LS + L  N F G +P     
Sbjct: 350 SGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFSSLSYVYLGYNLFNGIIPSWLYT 409

Query: 333 --HASCLPLSHLKLGG-----------------NFLDGRIPSWLF--------------- 358
                 L L H KL G                 N L G IPS +F               
Sbjct: 410 LLSLVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELHGPIPSSIFKLVNLRSLYLSSNNL 469

Query: 359 -------NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRH------------- 398
                  N     NL+ L LSNN L+          + +I S++L +             
Sbjct: 470 SGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILPKIESIDLSNNKISGVWSWNMGK 529

Query: 399 --------------------------LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432
                                     LD+ SNLLQ       +   F SV  NKL+G   
Sbjct: 530 DTLWYLNLSYNSISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGIS 589

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIFSKCYDLVA 491
             IC +S+I  L+LS+N+LSGM+P CL NF   LS+L+LR+N+F G+IPQ F K   +  
Sbjct: 590 PLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRN 649

Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551
           L+ NDN LEG +P SL  C  LEVL++GNNKIND FP+W  TLP LQVLVLRSNSFHG I
Sbjct: 650 LDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHI 709

Query: 552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQY 611
                 +K PF  LRIID++ N F G LP  Y +SLK  M+ D D++   YM    Y+  
Sbjct: 710 --GCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYED- 766

Query: 612 YSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP 671
            S+++T KG+++E  ++LN F TIDLS+N+F+G IP+ +G L+SL+ LN SHN L G IP
Sbjct: 767 -SVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIP 825

Query: 672 V------------------------ELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDS 707
                                    +LTSL  L VLNLS N L G IP+G QFD+F NDS
Sbjct: 826 SSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDS 885

Query: 708 FIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGY 767
           + GN  LCGF L+++C   E  P P  EED    +   FDWK +++GYGCG+++GLSLG 
Sbjct: 886 YNGNSELCGFPLSKKCIADET-PEPSKEEDAEFEN--KFDWKFMLVGYGCGLVYGLSLGG 942

Query: 768 LAFSTGKPRWLMMMMFERHDAEKMRRIKPRPQR 800
           + F  GKP+W + ++ E +  +K+RR K    R
Sbjct: 943 IIFLIGKPKWFVSII-EENIHKKIRRCKRSTCR 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera]

 Score =  580 bits (1495), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 496/903 (54%), Gaps = 145/903 (16%)

Query: 3   ASASSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTL 62
           +S   H     +YPKT+SW K  DCCSWDG+ CD +TGHVI LDLS SWL GT+H N+TL
Sbjct: 54  SSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSCSWLFGTIHSNTTL 113

Query: 63  FLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL 122
           FLL H+Q+LNLA N+F+G+ IS  FG+F+ LTHLNLS S FSG++  +IS LS LV+LDL
Sbjct: 114 FLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNLSDSGFSGLISPEISHLSNLVSLDL 173

Query: 123 SSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFL 182
           S +   T+F  H FN+L +NLT+L+ L L  + + SV P+SLLN SS   + LS   C L
Sbjct: 174 SWN-SDTEFAPHGFNSLVQNLTKLQKLHLGGISISSVFPNSLLNRSSLISLHLSS--CGL 230

Query: 183 RGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLR 242
            G FP    H P L  L L  N  L+GN P  N ++ L  L L    FSG++P +IGNL+
Sbjct: 231 HGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSLTELYLLSKNFSGELPASIGNLK 290

Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVF---------------- 286
            L+ LDL  C F G +PASL NL Q+T LNL  N FSG+ P++F                
Sbjct: 291 SLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSGKIPNIFNNLRNLISIGLSNNHF 350

Query: 287 --------GNLSKLTRISLAHLNFTGQLP--LSAFNLTQLSLLELSRNQFVGQLPC---- 332
                   GNL+ L  +  ++    G +P  ++ F  + LS + L  N F G +P     
Sbjct: 351 SGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFSSLSYVYLGYNLFNGIIPSWLYT 410

Query: 333 --HASCLPLSHLKLGG-----------------NFLDGRIPSWLF--------------- 358
                 L L H KL G                 N L G IPS +F               
Sbjct: 411 LLSLVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELHGPIPSSIFKLVNLRSLYLSSNNL 470

Query: 359 -------NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRH------------- 398
                  N     NL+ L LSNN L+          + +I S++L +             
Sbjct: 471 SGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILPKIESIDLSNNKISGVWSWNMGK 530

Query: 399 --------------------------LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432
                                     LD+ SNLLQ       +   F SV  NKL+G   
Sbjct: 531 DTLWYLNLSYNSISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGIS 590

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIFSKCYDLVA 491
             IC +S+I  L+LS+N+LSGM+P CL NF   LS+L+LR+N+F G+IPQ F K   +  
Sbjct: 591 PLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRN 650

Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551
           L+ NDN LEG +P SL  C  LEVL++GNNKIND FP+W  TLP LQVLVLRSNSFHG I
Sbjct: 651 LDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHI 710

Query: 552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQY 611
                 +K PF  LRIID++ N F G LP  Y +SLK  M+ D D++   YM    Y+  
Sbjct: 711 --GCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYED- 767

Query: 612 YSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP 671
            S+++T KG+++E  ++LN F TIDLS+N+F+G IP+ +G L+SL+ LN SHN L G IP
Sbjct: 768 -SVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIP 826

Query: 672 V------------------------ELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDS 707
                                    +LTSL  L VLNLS N L G IP+G QFD+F NDS
Sbjct: 827 SSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDS 886

Query: 708 FIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGY 767
           + GN  LCGF L+++C   E  P P  EED    +   FDWK +++GYGCG+++GLSLG 
Sbjct: 887 YNGNSELCGFPLSKKCIADET-PEPSKEEDAEFEN--KFDWKFMLVGYGCGLVYGLSLGG 943

Query: 768 LAF 770
           + F
Sbjct: 944 IIF 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099671|ref|XP_002334453.1| predicted protein [Populus trichocarpa] gi|222872411|gb|EEF09542.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 358/815 (43%), Positives = 477/815 (58%), Gaps = 77/815 (9%)

Query: 15  YPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLA 74
           +PKT+SW +   CC WDG+ CD  TGHV GLDLS S L GTL PN++LF LHHLQ L+L+
Sbjct: 61  FPKTESWKEGTGCCLWDGVTCDLKTGHVTGLDLSCSMLYGTLLPNNSLFSLHHLQNLDLS 120

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
            NDFN + ISS FGQF+ LTHLNLS S  +G VPS++S LSKLV+LDLS       +E  
Sbjct: 121 FNDFNSSHISSRFGQFSSLTHLNLSGSVLAGQVPSEVSHLSKLVSLDLS-----LNYEPI 175

Query: 135 TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFP 194
           +F+ L +NLT+LR L L  V M  ++  + L+LS  +LI          G+ P  + +  
Sbjct: 176 SFDKLVRNLTKLRELDLSWVDMSLLL--TYLDLSGNNLI----------GQIPSSLGNLT 223

Query: 195 FLRQLTLSDNGLLTGNLPTSNWS-SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
            L  L LS+N  L+G +P+S  +   LR L LS  KF G++PD++G+L +L         
Sbjct: 224 QLTFLDLSNNN-LSGQIPSSLGNLVQLRYLCLSSNKFMGQVPDSLGSLVNLS-------- 274

Query: 254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL 313
             GQ+ +SLS + QLT L+L  N  SG+ P   GNL  L  + L    F GQ+P S  +L
Sbjct: 275 --GQIISSLSIVTQLTFLDLSRNNLSGQIPSSLGNLVHLRSLFLGSNKFMGQVPDSLGSL 332

Query: 314 TQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
             LS L+LS NQ VG +    + L  L  L L  N  +G IPS  F L + +N   LDL 
Sbjct: 333 VNLSDLDLSNNQLVGSIHSQLNTLSNLQSLYLSNNLFNGTIPSSFFALPSLQN---LDLH 389

Query: 373 NNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR-LPFILSSR---IRFLSVSDNKLT 428
           NN L G I +             LR LD+ +N L   +P  +S++      +  S++KLT
Sbjct: 390 NNNLIGNISEFQH--------NSLRFLDLSNNHLHGPIPSSISNQENLTALILASNSKLT 441

Query: 429 GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIFSKCY 487
           GE  SSIC L  +  L+LSNNSLSG  P CL NF + LS+L L  N+ +G IP IFSK  
Sbjct: 442 GEISSSICKLRCLLVLDLSNNSLSGSTPLCLGNFSNMLSVLHLGMNKLQGIIPSIFSKDN 501

Query: 488 DLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
            L  LNLN NELEGK+P S+ NC  LEV+D+GNNKI D FPY+  TLP LQVLVL+SN  
Sbjct: 502 SLEYLNLNGNELEGKIPLSIINCTMLEVIDLGNNKIEDTFPYFLETLPELQVLVLKSNKL 561

Query: 548 HGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAG 607
            G +    P     F  LRI+DIS N F+G LP  YF SL+AMM  D + + +   N  G
Sbjct: 562 QGFVKG--PIAYNSFSILRILDISDNNFSGPLPTGYFNSLEAMMASDQNMVYMGTTNYTG 619

Query: 608 YDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH---- 663
           YD  YS+ +T+KGV++E  ++ +    +DLSNN F G IPK +GKL +L  LN S+    
Sbjct: 620 YD--YSIEMTWKGVEIEFTKIRSTIKVLDLSNNNFTGEIPKAIGKLKALHQLNLSYNFLT 677

Query: 664 --------------------NILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSF 703
                               N+L G IP +L  LT L++LNLS N+L G IP GKQF++F
Sbjct: 678 GHIQSSLENLNNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNRLEGRIPSGKQFNTF 737

Query: 704 QNDSFIGNLGLCGFALTQQCSNYE---VPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVI 760
              SF GNLGLCGF + ++C   E   +PP+   E DD++     F WK V +GYGCG +
Sbjct: 738 NASSFEGNLGLCGFQVLKKCYGDEAPSLPPSSFDEGDDSTLFGEGFGWKAVTVGYGCGFV 797

Query: 761 WGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIK 795
           +G++ GY+ F T KP W + M+ ++ +    +  K
Sbjct: 798 FGVATGYVVFRTKKPSWFLRMVEDKWNLNSKKTKK 832

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773180|emb|CAN78183.1| hypothetical protein VITISV_024119 [Vitis vinifera]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 355/858 (41%), Positives = 487/858 (56%), Gaps = 134/858 (15%)

Query: 10  DAAVTYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQ 69
           D + ++ KT +W +D DCCSWDG+ C+ +T  VIGLDLS S L GT+H NS+LFLL HL+
Sbjct: 46  DVSASFAKTDTWKEDTDCCSWDGVTCNRVTSLVIGLDLSCSGLYGTIHSNSSLFLLPHLR 105

Query: 70  KLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRT 129
           +LNLA NDFN + IS+ FGQF ++THLNLSFS FSG++  +IS LS LV+LDLS      
Sbjct: 106 RLNLAFNDFNKSSISAKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLVSLDLSI-YSGL 164

Query: 130 KFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPID 189
             E  +F  L +NLT+L+ L L  + + S++P  +  L+ +SL S+ L +C L G FP D
Sbjct: 165 GLETSSFIALTQNLTKLQKLHLRGINVSSILP--ISLLNLSSLKSMDLSSCQLHGRFPDD 222

Query: 190 IFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249
               P L+ L L  N  L+GN P  N S+ + +LDLS T FSG++P +I  L+ L+ LDL
Sbjct: 223 DLQLPNLKVLKLKGNHDLSGNFPKFNESNSILLLDLSSTNFSGELPSSISILKSLESLDL 282

Query: 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS 309
             C F G +P  L  L Q+T L+L  NQF GE  +VF    K++ + ++  +F GQ   S
Sbjct: 283 SHCNFSGSIPLVLGKLTQITYLDLSRNQFDGEISNVFNRFRKVSVLDISSNSFRGQFIAS 342

Query: 310 AFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVE 368
             NLT+LS L+LS N+  G +P H      LS + L  N  +G IPSWLF+L +   L+E
Sbjct: 343 LDNLTELSFLDLSNNKLEGVIPSHVKELSSLSSVHLSNNLFNGTIPSWLFSLPS---LIE 399

Query: 369 LDLSNNKLTGQ--------------------------IFQLDQWPVERISS------VE- 395
           LDLS+NKL G                           IF+L      ++SS      VE 
Sbjct: 400 LDLSHNKLNGHIDEFQSPSLESIDLSNNELDGPVPSSIFELVNLTYLQLSSNNLGGIVET 459

Query: 396 --------LRHLDVQSNLL-------------------------QRLPFILSSR--IRFL 420
                   L +LD+  N+L                            P  L S+  + FL
Sbjct: 460 DMFMNLENLVYLDLSYNILTLSNYNHSNCALPSLETLLLSSCDISEFPRFLCSQELLAFL 519

Query: 421 SVSDNKLTGEFP----------SSICNLSTIEYLNLSNNSLSGMIPQCLANF-DSLSLLD 469
            +S+NK+ G+ P          S IC +S IE L+ SNN+LSG+IPQCL NF  S S+LD
Sbjct: 520 DLSNNKIYGQLPKWAWNVGPLPSLICEMSYIEVLDFSNNNLSGLIPQCLGNFSKSFSVLD 579

Query: 470 LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPY 529
           LR NQ  G+IP+ FSK   +  L+ N N+LEG L  SL NC  L+VLD+GNN+IND FP+
Sbjct: 580 LRMNQLYGTIPKTFSKGNLIRNLDFNGNQLEGPLLRSLINCRRLQVLDLGNNRINDTFPH 639

Query: 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
           W  TLP LQVL+LRSN FHG +  +  + + PFP+LRI+D+SRNGF+  L   Y ++ KA
Sbjct: 640 WLETLPELQVLILRSNRFHGHVRGS--NFQFPFPKLRIMDLSRNGFSASLSKIYLKNFKA 697

Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKE 649
           MM+   D ++L +M    Y    S+++T KG D E                   G IP+E
Sbjct: 698 MMNATEDKMELKFMGEYSYRD--SIMVTIKGFDFEF----------------LSGRIPRE 739

Query: 650 VGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFI 709
           +  L+ L++L                        NLS N L G IP+G QFDSF N+S+ 
Sbjct: 740 LTSLTFLEVL------------------------NLSKNHLTGVIPRGNQFDSFTNNSYS 775

Query: 710 GNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWKIVVMGYGCGVIWGLSLGYLA 769
           GN+GLCGF L+++C   E P  P  EE ++ +    FDWK+++MGYGCG++ GLS+G L 
Sbjct: 776 GNIGLCGFPLSKKCVVDEAPQPPKEEEVESDTG---FDWKVILMGYGCGLVVGLSIGCLV 832

Query: 770 FSTGKPRWLMMMM-FERH 786
           F T KP+W + M+  +RH
Sbjct: 833 FLTRKPKWFVRMIEGDRH 850

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121020|ref|XP_002318477.1| predicted protein [Populus trichocarpa] gi|222859150|gb|EEE96697.1| predicted protein [Populus trichocarpa]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 368/818 (44%), Positives = 487/818 (59%), Gaps = 57/818 (6%)

Query: 15  YPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLA 74
           +PKT+SW +  DCC WDG+ CD  TGHV GLDLS S L GTLH NSTLF LHHLQKL+L+
Sbjct: 54  HPKTESWKEGTDCCLWDGVTCDLETGHVTGLDLSCSMLYGTLHSNSTLFSLHHLQKLDLS 113

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
            NDFN + ISS FGQF+ LT LNL++  F+G VPS+IS LSKLV+LDLS +   +  +  
Sbjct: 114 DNDFNSSHISSRFGQFSNLTLLNLNYLDFAGQVPSEISHLSKLVSLDLSRNYDLS-LQPI 172

Query: 135 TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFP 194
            F+ L +NLT+LR L L +V M S+V  + L   S+SL SLSLG+C L+G+FP +IF  P
Sbjct: 173 CFDKLVQNLTKLRQLDLGSVNM-SLVEPNSLTNLSSSLSSLSLGDCGLQGKFPGNIFLLP 231

Query: 195 FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP-DTIGNLRDLKFLDLYVCY 253
            L  L L  N  LTG+ P+SN S+ L  LDLS T+ S  +  D I NL+ L+++ L    
Sbjct: 232 NLESLDLIFNDGLTGSFPSSNLSNVLSRLDLSNTRISVYLENDLISNLKLLEYMSLSESN 291

Query: 254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL 313
                 A L NL +LT L+L  N F GE P   GNL +L  + L    F GQ+P S  +L
Sbjct: 292 IIRSDLALLGNLTRLTYLDLSGNNFGGEIPSSLGNLVQLRSLYLYSNKFVGQVPDSWGSL 351

Query: 314 TQLSLLELSRNQFVGQLPCHASCLPLSHLK---LGGNFLDGRIPSWLFNLSTSENLVELD 370
             L  L+LS N  VG  P H+    LS+LK   L  N  +  IPS+L+ L +   L  LD
Sbjct: 352 IHLLDLDLSDNPLVG--PVHSQINTLSNLKSLALSDNLFNVTIPSFLYALPS---LYYLD 406

Query: 371 LSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQ-RLP---FILSSRIRFLSVSDNK 426
           L NN L G I +             L +LD+ +N L   +P   F   +    +  S++K
Sbjct: 407 LHNNNLIGNISEFQH--------NSLTYLDLSNNHLHGTIPSSIFKQENLEALILASNSK 458

Query: 427 LTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQIFSK 485
           LTGE  SSIC L  ++ L+LSNNSLSG  P CL NF + LS+L L  N  +G+IP  FSK
Sbjct: 459 LTGEISSSICKLRFLQVLDLSNNSLSGSTPPCLGNFSNILSVLHLGMNNLQGAIPSTFSK 518

Query: 486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
              L  LNLN NEL+GK+  S+ NC  LEVLD+GNNKI D FPY+  TLP LQ+L+L+SN
Sbjct: 519 DNSLEYLNLNGNELQGKISSSIINCTMLEVLDLGNNKIEDTFPYFLETLPHLQILILKSN 578

Query: 546 SFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNS 605
              G +     +    F EL+I DIS N F G LP  +   L+AMM  D + I   YMN+
Sbjct: 579 KLQGFVKGR--TTYNSFSELQIFDISDNDFRGPLPTGFLNCLEAMMASDQNMI---YMNA 633

Query: 606 AGYDQY-YSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH- 663
             Y +Y YS+ +T+KGV++E  ++ +    +DLSNN F   IPK +GKL +L+ LN SH 
Sbjct: 634 TNYSRYVYSIEMTWKGVEIEFPKIQSTIRVLDLSNNNFTEEIPKVIGKLKALQQLNLSHN 693

Query: 664 -----------------------NILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQF 700
                                  N+L G IP++L  LT L++LNLS NQL GPIP GKQF
Sbjct: 694 SLAGYIQSSLGILTNLESLDLSSNLLTGRIPMQLGVLTFLAILNLSHNQLEGPIPSGKQF 753

Query: 701 DSFQNDSFIGNLGLCGFALTQQCSNYE---VPPAPMPEEDDTSSSWAWFDWKIVVMGYGC 757
           ++F   SF GNLGLCGF + ++C   E   +PP+   E DD++     F WK V +GYGC
Sbjct: 754 NTFNASSFEGNLGLCGFQVLKECYGDEAPSLPPSSFDEGDDSTLVGDGFGWKAVTIGYGC 813

Query: 758 GVIWGLSLGYLAFSTGKPRWLMMMMFERHDAEKMRRIK 795
           G ++G++ GY+ F T KP W   M+ ++ + +  +  K
Sbjct: 814 GFVFGVASGYVVFRTKKPSWFFRMVEDKWNLKSKKTKK 851

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	801
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.825	0.780	0.355	1.9e-90
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.863	0.790	0.352	1.7e-89
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.863	0.797	0.340	5.3e-88
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.832	0.775	0.335	1.7e-84
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.787	0.778	0.360	1.2e-81
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.779	0.652	0.366	2e-81
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.775	0.609	0.346	4.1e-81
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.712	0.728	0.354	2.9e-80
TAIR|locus:2094563	595	RLP36 "receptor like protein 3	0.644	0.867	0.376	1.8e-78
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.832	0.707	0.344	5e-76

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 249/700 (35%), Positives = 352/700 (50%)

Query:    21 WNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTXXXXXXXXXXXXA-CNDFN 79
             WNK  DCC W+G+ C++ +G VI LD+ +++L   L  NS+              CN + 
Sbjct:    65 WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query:    80 GTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNL 139
               +I S+ G  + LT +NL F+ F G +P+ I  L++L  L L++++   +    +  NL
Sbjct:   125 --EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPS-SLGNL 181

Query:   140 AKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLRQL 199
             ++ L  L   L  N ++   +P                 N  L GE P  + +   L  L
Sbjct:   182 SR-LVNLE--LFSN-RLVGKIPDSIGDLKQLRNLSLASNN--LIGEIPSSLGNLSNLVHL 235

Query:   200 TLSDNGLLTGNLPTSNWSS-PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV 258
              L+ N L+ G +P S  +   LR++       SG IP +  NL  L    L    F    
Sbjct:   236 VLTHNQLV-GEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTF 294

Query:   259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS-AFNLTQLS 317
             P  +S    L   ++  N FSG FP     +  L  I L    FTG +  +   + T+L 
Sbjct:   295 PFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQ 354

Query:   318 LLELSRNQFVGQLPCHAS-CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
              L L RN+  G +P   S  L L  L +  N   G IP     +S   NL+ LDLS N L
Sbjct:   355 DLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPP---TISKLVNLLHLDLSKNNL 411

Query:   377 TGQIFQLDQWPVERISSVELRHLDVQS--NLLQRLPFILSSRIRFLSVSDNKLTGEFPSS 434
              G++     W   R++++ L H    S  N  Q       + I  L ++ N   G  P  
Sbjct:   412 EGEV-PACLW---RLNTMVLSHNSFSSFENTSQE-----EALIEELDLNSNSFQGPIPYM 462

Query:   435 ICNLSTIEYLNLSNNSLSGMIPQCLANFD-SLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
             IC LS++ +L+LSNN  SG IP C+ NF  S+  L+L  N F G++P IFSK  +LV+L+
Sbjct:   463 ICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLD 522

Query:   494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
             ++ N+LEGK P SL NC  LE+++V +NKI D FP W  +LP L VL LRSN F+GP+Y+
Sbjct:   523 VSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYH 582

Query:   554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAG-Y-DQY 611
                SI   F  LRIIDIS N F+G LP  YF + K M     +++D  YM     Y D Y
Sbjct:   583 RHASIG--FQSLRIIDISHNNFSGTLPPYYFSNWKDMTTL-TEEMD-QYMTEFWRYADSY 638

Query:   612 Y-SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEI 670
             Y  M +  KGVD+  ER+   F  ID S N+  G IP+ +G L  L++LN S N     I
Sbjct:   639 YHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVI 698

Query:   671 PVELTSLTALSVLNLSFNQLVGPIPQ---GKQFDSFQNDS 707
             P  L +LT L  L++S N+L G IPQ      F S+ N S
Sbjct:   699 PRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFS 738

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 265/751 (35%), Positives = 381/751 (50%)

Query:    17 KTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTXXXXXXXXXXXXACN 76
             KTKSW    DCC WDGI CD  TG VI +DL  S L G  H NS                
Sbjct:    59 KTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDL 118

Query:    77 DFN--GTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL-----SSDIPRT 129
              +N    +ISS+ G  + LT L+LS + FSG +PS +  L  L +L L       +IP +
Sbjct:   119 SYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSS 178

Query:   130 --KFEQHTFNNLAKN------------LTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXX 175
                    TF +L+ N            L +L  L LDN ++   +P              
Sbjct:   179 LGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISL 238

Query:   176 XXGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKI 234
                N F  G  P +I     L   + S N  + G +P+S ++ P + ++ L   + SG +
Sbjct:   239 SH-NQFT-GTLPPNITSLSILESFSASGNNFV-GTIPSSLFTIPSITLIFLDNNQLSGTL 295

Query:   235 P-DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFP-DVFGNLSKL 292
                 I +  +L  L L      G +P S+S L  L  L+L      G+   ++F +L  L
Sbjct:   296 EFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLL 355

Query:   293 TRISLAHLNFTGQLPLSAFN--LTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350
               + L+H N T  + L+A       L  L+LS N  +       S  PL    +G   L 
Sbjct:   356 GNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLG--LIGSLNLS 413

Query:   351 G-RIPSWLFNLSTSENLVELDLSNNKLTGQI--FQLDQWPVERISSVELRHLDVQSNLLQ 407
             G  I  +   L T   +  LD+SNNK+ GQ+  + L Q     IS+      + +S  L+
Sbjct:   414 GCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFE-RSTKLE 472

Query:   408 RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LS 466
             +      S   F   S+N  +G+ PS IC+L ++  L+LSNN+ SG IP C+  F S LS
Sbjct:   473 KTVVPKPSMKHFFG-SNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLS 531

Query:   467 LLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDA 526
              L+LR+N+  GS+P+   K   L +L+++ NELEGKLP SL +   LEVL+V +N+IND 
Sbjct:   532 DLNLRRNRLSGSLPKTIIK--SLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDT 589

Query:   527 FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQS 586
             FP+W ++L +LQVLVLRSN+FHG I+      K  FP+LRIIDISRN F G LP+  F  
Sbjct:   590 FPFWLSSLKKLQVLVLRSNAFHGRIH------KTRFPKLRIIDISRNHFNGTLPSDCFVE 643

Query:   587 LKAM--MHGDNDDIDLDYMNSAGYDQYY-SMILTYKGVDLEMERVLNIFTTIDLSNNRFE 643
                M  +  + D  +  YM S GY  Y+ SM+L  KG+++E+ R+L I+T +D S N+FE
Sbjct:   644 WTGMHSLEKNEDRFNEKYMGS-GY--YHDSMVLMNKGLEMELVRILKIYTALDFSGNKFE 700

Query:   644 GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ--GK--- 698
             G IP+ +G L  L +LN S N   G IP  + +L  L  L++S N+L G IPQ  G    
Sbjct:   701 GEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSY 760

Query:   699 -QFDSFQNDSFIGNL-GLCGFALTQQCSNYE 727
               + +F ++  +G + G   F  TQ  S++E
Sbjct:   761 LAYMNFSHNQLVGQVPGGTQFR-TQSASSFE 790

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 253/742 (34%), Positives = 379/742 (51%)

Query:    15 YPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNS---TXXXXXXXXXX 71
             +P T+SW  + DCC WDGI C++ +G V+ LDLS S L    H NS   T          
Sbjct:    65 HPTTESWANNSDCCYWDGITCNDKSGEVLELDLSRSCLQSRFHSNSSLFTVLNLRFLTTL 124

Query:    72 XXACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKF 131
               + N F+G +I S    F+ LT L+LS +YFSG +PS I  LS+L  LDLS +      
Sbjct:   125 DLSYNYFSG-QIPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLSQLTFLDLSGN--EFVG 181

Query:   132 EQHTFNNLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIF 191
             E   F N+   LT L Y+  D+  +  + P                 N F  G  P ++ 
Sbjct:   182 EMPFFGNM-NQLTNL-YV--DSNDLTGIFPLSLLNLKHLSDLSLSR-NQFT-GTLPSNMS 235

Query:   192 HFPFLRQLTLSDNGLLTGNLPTSNWS-SPLRILDLSITKFSGKIP-DTIGNLRDLKFLDL 249
                 L       N   TG LP+S ++ + L  ++L   + +G +    I +   L  LD+
Sbjct:   236 SLSNLEYFEAWGNAF-TGTLPSSLFTIASLTSINLRNNQLNGTLEFGNISSPSTLTVLDI 294

Query:   250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFP-DVFGNLSKLTRISLAHLNFTGQLPL 308
                 F G +P S+S    L  L+L      G     +F NL  L  ++L+HLN T  + L
Sbjct:   295 SNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDL 354

Query:   309 SAF---NLTQLSLLELSRNQFVG----QLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLS 361
             +A    +L  +  ++LS N         +  H     +S L L G  +    P  L    
Sbjct:   355 NALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGIT-EFPELL---R 410

Query:   362 TSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRH---LDVQSNLLQRLPFILSSRIR 418
             +   +  LD+SNNK+ GQ+     W + ++  V+L +      + +    L  I    ++
Sbjct:   411 SQHKMTNLDISNNKIKGQVPGW-LWTLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQ 469

Query:   419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRG 477
             +L  S+N  TG+ PS IC L ++  L+LS+N+L+G IP C+ N  S LS L+LR+N+  G
Sbjct:   470 YLVGSNNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGG 529

Query:   478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537
              +P+   K   L +L++  N+L GKLP S      LEVL+V NN+IND FP+W ++L +L
Sbjct:   530 GLPRSIFK--SLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKL 587

Query:   538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAM--MHGDN 595
             QVLVLRSN+FHGPI++        F  LRII++S N F+G LPA YF +  AM  +    
Sbjct:   588 QVLVLRSNAFHGPIHH------ASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATE 641

Query:   596 DDIDLDYMNSAGYDQYY-SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLS 654
             D     YM  + +  Y+ S++L  KG+++E+ R+L I+T +D S N+ EG IP+ +G L 
Sbjct:   642 DRSQEKYMGDS-FRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLK 700

Query:   655 SLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ--GK-QFDSFQNDSF--I 709
              L +LN S N   G IP  + +L  L  L++S N+L G IPQ  G   + ++ N S   +
Sbjct:   701 ELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQL 760

Query:   710 GNLGLCGFALTQQ-CSNYEVPP 730
             G L   G    +Q CS+++  P
Sbjct:   761 GGLVPGGTQFRRQNCSSFKDNP 782

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 235/700 (33%), Positives = 346/700 (49%)

Query:    20 SWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTXXXXXXXXXXXXACNDFN 79
             SWNK  DCCSW+G+ CD ++  VI L+LS   L  +L PNS             +     
Sbjct:    62 SWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLY 121

Query:    80 GTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNL 139
             G  I S+ G   +LT L+LS++Y  G VP  I  LS+L  LDL  +    K       ++
Sbjct:   122 GD-IPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDN----KLVGQLPASI 176

Query:   140 AKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLRQL 199
               NLT+L YL+  + +    +P                 N F     P+D+  F  L   
Sbjct:   177 G-NLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLY-NNSF-ESMLPLDMSGFQNLDYF 233

Query:   200 TLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKIP--DTIGNLRDLKFLDLYVCYFDG 256
              + +N   +G LP S ++ P LR  +L    F G I   +       L++L L    FDG
Sbjct:   234 NVGENSF-SGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDG 292

Query:   257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ- 315
              +P +LS    L  L+L  N  +G FP     +  L R++L   +  G +     + +  
Sbjct:   293 PIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMSSSSS 352

Query:   316 LSLLELSRNQFVGQLPCHAS-CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
             L  L  ++N+F G +P   S  L L  L L  N   G IP  +  L+  E      L +N
Sbjct:   353 LKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFC---LEDN 409

Query:   375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS 434
              + G++     W + R++ V L +    S   +    +  +++++L +S N   G FP  
Sbjct:   410 NMVGEV---PSW-LWRLTMVALSNNSFNS-FGESSEGLDETQVQWLDLSSNSFQGPFPHW 464

Query:   435 ICNLSTIEYLNLSNNSLSGMIPQCLANFD-SLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
             IC L ++E L +S+N  +G IP CL++F  SL+ L LR N   G +P IF     L++L+
Sbjct:   465 ICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLD 524

Query:   494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
             ++ N+L+G LP SL +C  +++L+V +NKI D FP W  +LP L VL+LRSN F+G +Y 
Sbjct:   525 VSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQ 584

Query:   554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAM--MHGDNDDIDLD---YMNSA-G 607
                SI   F  LR+ID+S N   G LP+ YF S + M  + G++ D  L    YM     
Sbjct:   585 PHASIG--FQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLN 642

Query:   608 YDQYY--SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNI 665
                ++  SM +  KGV+ E +R+      I+ S NRF G IP+ +G L  L+ LN S N 
Sbjct:   643 ATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNA 702

Query:   666 LRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
               G IP  L +L  L  L+LS NQL G IPQG    SF +
Sbjct:   703 FTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMS 742

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 246/682 (36%), Positives = 346/682 (50%)

Query:    77 DFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF 136
             +F GT + +    F  L  LNLSF+YF+G  P+ +   +KL  LDLS ++          
Sbjct:    74 NFTGT-VPTTICNFPNLKSLNLSFNYFAGEFPTVLYNCTKLQYLDLSQNLFNGSLPDD-I 131

Query:   137 NNLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFL 196
             N LA    +L+YL L        +P                      G FP +I     L
Sbjct:   132 NRLAP---KLKYLDLAANSFAGDIPKNIGRISKLKVLNLYMSE--YDGTFPSEIGDLSEL 186

Query:   197 RQLTLSDNGLLTG-NLPTSNWS-SPLRILDLSITKFSGKIPDTI-GNLRDLKFLDLYVCY 253
              +L L+ N   T   LPT       L+ + L      G+I   +  N+ DLK +DL V  
Sbjct:   187 EELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAVVFENMTDLKHVDLSVNN 246

Query:   254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL 313
               G++P  L  LK LT L L  N  +GE P    +   L  + L+  N  G +P S  NL
Sbjct:   247 LTGRIPDVLFGLKNLTELYLFANDLTGEIPKSI-SAKNLVHLDLSANNLNGSIPESIGNL 305

Query:   314 TQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
             T L LL L  N+  G++P     LP L  LKL  N L G IP+ +  +S  E     ++S
Sbjct:   306 TNLELLYLFVNELTGEIPRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERF---EVS 362

Query:   373 NNKLTGQIFQLDQWPVERISSV-------------ELRHLDVQSN-LLQRLPFILSSRIR 418
              N+LTG++ + +     ++ SV              L   +  S+ LLQ   F  S  I 
Sbjct:   363 ENQLTGKLPE-NLCHGGKLQSVIVYSNNLTGEIPESLGDCETLSSVLLQNNGFSGSVTIS 421

Query:   419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS 478
               + S+N  TG+ PS IC L ++  L+LS N  +G IP+C+AN  +L +L+L KN   GS
Sbjct:   422 NNTRSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSGS 481

Query:   479 IPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ 538
             IP+  S    + ++++  N+L GKLP SL     LEVL+V +NKIND FP+W  ++ +LQ
Sbjct:   482 IPENIST--SVKSIDIGHNQLAGKLPRSLVRISSLEVLNVESNKINDTFPFWLDSMQQLQ 539

Query:   539 VLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH-GDNDD 597
             VLVLRSN+FHG I  N       F +LRIIDIS N F G LP  +F +  AM   G  +D
Sbjct:   540 VLVLRSNAFHGSINQN------GFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSLGKIED 593

Query:   598 --IDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655
               +  +YM +  Y    S+++  KG+ LEM R+LN FTTID S N+FEG IP+ VG L  
Sbjct:   594 QYMGTNYMRTNYYSD--SIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLLKE 651

Query:   656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ--GK----QFDSFQNDSFI 709
             L +LN S+N   G IP  + +L  L  L++S N+L G IP   GK     + +F  + F+
Sbjct:   652 LHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQFV 711

Query:   710 GNL-GLCGFALTQQCSNYEVPP 730
             G + G   F  TQ CS++   P
Sbjct:   712 GLVPGGTQFQ-TQPCSSFADNP 732

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 246/671 (36%), Positives = 357/671 (53%)

Query:    76 NDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHT 135
             N F+G +I S+ G  + LT L+LS + FSG +PS I  LS+L  L L S+     F    
Sbjct:   227 NKFSG-QIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSN----NFVGEI 281

Query:   136 FNNLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPF 195
              ++   NL +L  L +D+ ++    P                 N F  G  P +I     
Sbjct:   282 PSSFG-NLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLS-NNKFT-GTLPPNITSLSN 338

Query:   196 LRQLTLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKIP-DTIGNLRDLKFLDLYVCY 253
             L     SDN   TG  P+  ++ P L  + L+  +  G +    I +  +L  LD+    
Sbjct:   339 LMDFDASDNAF-TGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNN 397

Query:   254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFP-DVFGNLSKLTRISLAHLNFTGQLPLSAF- 311
             F G +P+S+S L +L  L++      G     +F +L  L  ++++HLN T ++ L+ F 
Sbjct:   398 FIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFL 457

Query:   312 -NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG-RIPSWLFNLSTSENLVEL 369
                 +L LL+LS N          S  P S L +   +L G  I  +   + T   L  L
Sbjct:   458 SYFKRLLLLDLSGNHVSATNKSSVSDPP-SQL-IQSLYLSGCGITEFPEFVRTQHELGFL 515

Query:   370 DLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLL---QRLPFILSSRIRFLSVSDNK 426
             D+SNNK+ GQ+     W + R+    L ++++ +N L   QR P      + +L  S+N 
Sbjct:   516 DISNNKIKGQV---PDW-LWRLPI--LYYVNLSNNTLIGFQR-PSKPEPSLLYLLGSNNN 568

Query:   427 LTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIP-QIFS 484
               G+ PS IC L ++  L+LS+N+ +G IP+C+ +  S LS+L+LR+N   G +P QIF 
Sbjct:   569 FIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFE 628

Query:   485 KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRS 544
                 L +L++  N+L GKLP SL+    LEVL+V +N+IND FP+W ++LP+LQVLVLRS
Sbjct:   629 I---LRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRS 685

Query:   545 NSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH-GDNDDIDLD-Y 602
             N+FHGPI+      +  FPELRIIDIS N F G LP  YF    AM   G N+D   + Y
Sbjct:   686 NAFHGPIH------EATFPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKY 739

Query:   603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFS 662
             M S  Y Q  SM+L  KGV +E+ R+L I+T +D S NRFEG IPK +G L  L +L+ S
Sbjct:   740 MGSGLYYQD-SMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLS 798

Query:   663 HNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ--GK-QFDSFQNDSFIGNLGLCGFA- 718
             +N   G +P  + +LTAL  L++S N+L G IPQ  G   F ++ N S     GL     
Sbjct:   799 NNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQ 858

Query:   719 --LTQQCSNYE 727
               LTQ CS +E
Sbjct:   859 QFLTQNCSAFE 869

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 231/666 (34%), Positives = 340/666 (51%)

Query:    87 FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL 146
             F +   L  L + ++ FSG +P  IS L  L +L LS      K     F+ L  NL+ L
Sbjct:   295 FHENNSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIP---FS-LG-NLSHL 349

Query:   147 RYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLRQLTLSDNGL 206
              +L L +  +   +P                GN  L G  P  + +   L  ++LS N  
Sbjct:   350 SHLSLSSNNLIGEIPSSIGNLNQLTNFYVG-GNK-LSGNLPATLSNLTKLNTISLSSNQF 407

Query:   207 LTGNLPTS-NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPAS---- 261
              TG+LP S +  S L+        F G I   +  +  L  + L     +  V       
Sbjct:   408 -TGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFM 466

Query:   262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKL-----TRISLAHLNFTGQLPLSAFNLTQL 316
             L NL+   + +    +      +VF +L +L     +RI ++  N T   P    NL  L
Sbjct:   467 LPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGTLYISRIPISTTNITSDFPS---NLEYL 523

Query:   317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
             SL   +   F   +    +   L  L L  N + G++P WL+ + T   L  +DLSNN L
Sbjct:   524 SLRSCNITDFPEFIRKGRN---LQILDLSNNKIKGQVPDWLWRMPT---LNSVDLSNNSL 577

Query:   377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC 436
             +G    +   P  +++SV     D+ SN  Q   F+ S  +R+ S S+N  TG+ P SIC
Sbjct:   578 SGFHVSVKASPESQLTSV-----DLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSIC 632

Query:   437 NLSTIEYLNLSNNSLSGMIPQCLANF-DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
              LS++E L+LSNN+L+G +P CL     SLS LDLR N   GS+P+IF     L +L+++
Sbjct:   633 GLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVS 692

Query:   496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNV 555
              N +EGKLP SL  C  LEVL+VG+N+IND FP+   +L +LQVLVL SN FHG ++N V
Sbjct:   693 HNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHN-V 751

Query:   556 PSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM-NSAGYDQ---Y 611
               +   FP+L+IID+S N F G+LP+ YF +  AM    +++I+ +Y+ N + Y     Y
Sbjct:   752 DGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGY 811

Query:   612 Y-SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEI 670
             Y S++L  KGV +EMERVL I+T IDLS N+  G IP  +G L  L++LN S N   G I
Sbjct:   812 YTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHI 871

Query:   671 PVELTSLTALSVLNLSFNQLVGPIP------QGKQFDSFQNDSFIGNLGLCGFALTQQCS 724
             P  L +L  L  L++S N + G IP          + +  ++  +G++        Q+CS
Sbjct:   872 PSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCS 931

Query:   725 NYEVPP 730
             +YE  P
Sbjct:   932 SYEGNP 937

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 221/623 (35%), Positives = 328/623 (52%)

Query:   116 KLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXX 175
             ++++LDL S +  +  +  T ++L + L  LR+L L    +   +P              
Sbjct:    77 QVISLDLRSTLLNSSLK--TNSSLFR-LQYLRHLDLSGCNLHGEIPSSLGNLSRLENLEL 133

Query:   176 XXGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI-LDLSITKFSGKI 234
                   L GE P  I +   LR L+L DN L+ G +P+S  +  L + LDL      G++
Sbjct:   134 SSNR--LVGEIPYSIGNLKQLRNLSLGDNDLI-GEIPSSLGNLSLLLDLDLWNNSLVGEV 190

Query:   235 PDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTR 294
             P +IGNL +L+ + L      G +P S +NL +L+   +  N F+   P        L  
Sbjct:   191 PASIGNLNELRVMSLDRNSLSGSIPISFTNLTKLSEFRIFFNNFTS-LPSDLSGFHNLVT 249

Query:   295 ISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH--ASCLPLSHLKLGGNFLDGR 352
               ++  +F+G  P   F++  L+ + + RNQF G +     +S   L +L L  N LDG 
Sbjct:   250 FDISANSFSGHFPKFLFSIPSLAWVSMDRNQFSGPIEFANISSSSKLQNLILTRNKLDGS 309

Query:   353 IPSWLFNLSTSENLVELDLSNNKLTG------------QIF---------QLDQWPVERI 391
             IP    ++S   NLV LD+++N ++G            +IF         ++  W + R+
Sbjct:   310 IPE---SISKFLNLVLLDVAHNNISGPVPRSMSKLVSLRIFGFSNNKLEGEVPSW-LWRL 365

Query:   392 SSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
             SS  L H    S   +++ +   + I+ L +S N   G FP  IC L  + +L+LSNN  
Sbjct:   366 SSTMLSHNSFSS--FEKI-YSKETMIQVLDLSFNSFRGTFPVWICKLKGLHFLDLSNNLF 422

Query:   452 SGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511
             +G IP CL NF+   L+ L  N+F G++P IF+   +L +L+++ N+LEGK P SL NC 
Sbjct:   423 NGSIPLCLRNFNLTGLI-LGNNKFSGTLPDIFANNTNLQSLDVSGNQLEGKFPKSLINCK 481

Query:   512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
              L  ++V +NKI D FP W  +LP LQVL+LRSN F+GP+Y+  PS+   F  LRIIDIS
Sbjct:   482 GLHFVNVESNKIKDTFPSWLGSLPSLQVLILRSNDFYGPLYH--PSMSIGFQGLRIIDIS 539

Query:   572 RNGFTGLLPARYFQSLKAMM---HGDNDDIDLDYMNSAGYDQYY-SMILTYKGVDLEMER 627
              NGF+G+LP  +F S + M+   HG  + I+ D  N   Y   Y SM +  KGV++  ER
Sbjct:   540 HNGFSGVLPPNFFSSWREMITLVHGSYEYIE-DIQN---YSLIYRSMEMVNKGVEMSFER 595

Query:   628 VLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSF 687
             +   F  ID S NR  G IP+ +G L  L+LLN S N    +IP    +LT L  L+LS 
Sbjct:   596 IRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLSGNAFTSDIPRVWENLTKLETLDLSR 655

Query:   688 NQLVGPIPQ--GK-QFDSFQNDS 707
             N+L G IPQ  GK  F S+ N S
Sbjct:   656 NKLSGQIPQDLGKLSFLSYMNFS 678

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 204/542 (37%), Positives = 291/542 (53%)

Query:   199 LTLSDNGLLTGNLPTSNWSSPLRILDLSI--TKFSGKIPDTI-GNLRDLKFLDLYVCYFD 255
             + L DN L  GN+PTS +++  ++ +L +   +F+G   DT+  NL  L  +DL + YF 
Sbjct:     1 MRLWDNDL-KGNIPTS-FANLTKLSELYLFGNQFTGG--DTVLANLTSLSIIDLSLNYFK 56

Query:   256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPL-SAFNLT 314
               + A LS L  L   ++ +N FSG FP     +  L  I L+  +F G +   + F+L+
Sbjct:    57 SSISADLSGLHNLERFSVYNNSFSGPFPLSLLMIPSLVHIDLSQNHFEGPIDFRNTFSLS 116

Query:   315 QLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN 373
             +L +L +  N   G +P   S L  L +L +  N   G++P    ++S   NL  +DLS 
Sbjct:   117 RLRVLYVGFNNLDGLIPESISKLVNLEYLDVSHNNFGGQVPR---SISKVVNLTSVDLSY 173

Query:   374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
             NKL GQ+     W   ++  V+L +        + +  I  + +  L++  N + G FP 
Sbjct:   174 NKLEGQVPDF-VWRSSKLDYVDLSYNSFNC-FAKSVEVIDGASLTMLNLGSNSVDGPFPK 231

Query:   434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
              IC +  +  L+LSNN  +G IPQCL        L+LR N   G +P +F K   L +L+
Sbjct:   232 WICKVKDLYALDLSNNHFNGSIPQCLKYSTYFHTLNLRNNSLSGVLPNLFIKDSQLRSLD 291

Query:   494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
             ++ N L GKLP SL NC  +E L+V  NKI D FP+W  +LP L+VL+L SN+F+GP+YN
Sbjct:   292 VSSNNLVGKLPKSLINCERIEFLNVKGNKIMDTFPFWLGSLPYLKVLMLGSNAFYGPVYN 351

Query:   554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQS-LKAMMHGDNDDI-DLDYMNSAGYDQY 611
               PS    FP +RIIDIS N F G LP  YF + L+  +     DI    YM +  +  Y
Sbjct:   352 --PSAYLGFPSIRIIDISNNNFVGSLPQDYFANWLEMSLVWSGSDIPQFKYMGNVNFSTY 409

Query:   612 YSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP 671
              S+ L YKGV+ + +R+   F  ID S NRF G IP  +G LS L+LLN S N   G IP
Sbjct:   410 DSIDLVYKGVETDFDRIFEGFNAIDFSGNRFSGHIPGSIGLLSELRLLNLSGNAFTGNIP 469

Query:   672 VELTSLTALSVLNLSFNQLVGPIP--QGK-QFDSFQNDSFIGNLGLCG----FALTQQCS 724
               L ++T L  L+LS N L G IP   GK  F S  N S+    GL      FA TQ CS
Sbjct:   470 PSLANITNLESLDLSRNNLSGEIPISLGKLSFLSNTNFSYNHLEGLIPQSTQFA-TQNCS 528

Query:   725 NY 726
             ++
Sbjct:   529 SF 530

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 245/712 (34%), Positives = 359/712 (50%)

Query:    37 EMTGHVIGLDLSSSWLLGTLHPNSTXXXXXXXXXXXXACNDFNGTKISSNFGQFTKLTHL 96
             E    +  L LSS+   G + P+S             + N F+G +I S+ G  + LT L
Sbjct:   170 ENLSRLTSLHLSSNQFSGQI-PSSIGNLSHLTSLELSS-NQFSG-QIPSSIGNLSNLTFL 226

Query:    97 NLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQM 156
             +L  + F G +PS I  L++L  L LS +     F     ++   NL +L  L +D+ ++
Sbjct:   227 SLPSNDFFGQIPSSIGNLARLTYLYLSYN----NFVGEIPSSFG-NLNQLIVLQVDSNKL 281

Query:   157 FSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNW 216
                VP                 N F  G  P +I     L     S+N   TG LP+S +
Sbjct:   282 SGNVPISLLNLTRLSALLLSH-NQFT-GTIPNNISLLSNLMDFEASNNAF-TGTLPSSLF 338

Query:   217 SSPLRI-LDLSITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLE 274
             + P  I LDLS  + +G +    I +  +L++L +    F G +P SLS    LT+ +L 
Sbjct:   339 NIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLS 398

Query:   275 --DNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF--NLTQLSLLELSRNQFVGQL 330
               + Q       +F +L  L  + L++L  T  + L+        L  L++S N      
Sbjct:   399 HLNTQCRPVDFSIFSHLKSLDDLRLSYLTTT-TIDLNDILPYFKTLRSLDISGNLVSATN 457

Query:   331 PCHASCLPLSHLKLGGNFLDG-RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVE 389
                 S  P S   +   +L G  I  +   L T   L  LD+SNNK+ GQ+     W + 
Sbjct:   458 KSSVSSDPPSQ-SIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGW-LWTLP 515

Query:   390 RISSVELRH---LDVQSNLLQR-LPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLN 445
              +  + L +   +  +S+  +  L  +    +  L  S+N  TG+ PS IC L ++  L+
Sbjct:   516 NLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNTLD 575

Query:   446 LSNNSLSGMIPQCLANFDS-LSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKL 503
             LS N+ +G IP+C+    S L +L+LR+N   G +P+ IF     L +L++  N L GKL
Sbjct:   576 LSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFES---LRSLDVGHNLLVGKL 632

Query:   504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFP 563
             P SL    +LEVL+V +N+IND FP+W ++L +LQVLVLRSN+FHGPI+      +  FP
Sbjct:   633 PRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIH------EATFP 686

Query:   564 ELRIIDISRNGFTGLLPARYFQSLKAMMH-GDNDDIDLD-YMNSAGYDQYYSMILTYKGV 621
             ELRIIDIS N F G LP  YF    AM   G N+D   + YM S  Y Q  SM+L  KG+
Sbjct:   687 ELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQD-SMVLMNKGL 745

Query:   622 DLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALS 681
              +E+ R+L I+T +D S N+FEG IPK +G L  L +LN S+N   G IP  + +LTAL 
Sbjct:   746 AMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALE 805

Query:   682 VLNLSFNQLVGPIPQ--GK-QFDSFQNDSFIGNLGLC--GFALTQQ-CSNYE 727
              L++S N+L G IPQ  G   F ++ N S     GL   G    +Q CS +E
Sbjct:   806 SLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFE 857

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	801
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-43
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-24
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  234 bits (599), Expect = 3e-65
 Identities = 178/577 (30%), Positives = 271/577 (46%), Gaps = 60/577 (10%)

Query: 166 NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTG---------------N 210
           N S    I LS  N  + G+    IF  P+++ + LS+N L                  N
Sbjct: 67  NSSRVVSIDLSGKN--ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 211 LPTSNWSSP--------LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASL 262
           L  +N++          L  LDLS    SG+IP+ IG+   LK LDL      G++P SL
Sbjct: 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 263 SNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELS 322
           +NL  L  L L  NQ  G+ P   G +  L  I L + N +G++P     LT L+ L+L 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 323 RNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIF 381
            N   G +P     L  L +L L  N L G IP  +F+L   + L+ LDLS+N L+G+I 
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL---QKLISLDLSDNSLSGEIP 301

Query: 382 QLDQWPVERISSVELRHLDVQSNLLQRLPFILSS--RIRFLSVSDNKLTGEFPSSICNLS 439
           +L    V ++ ++E+ HL   +N   ++P  L+S  R++ L +  NK +GE P ++   +
Sbjct: 302 EL----VIQLQNLEILHL-FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499
            +  L+LS N+L+G IP+ L +  +L  L L  N   G IP+    C  L  + L DN  
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 500 EGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIK 559
            G+LP        +  LD+ NN +          +P LQ+L L  N F G     +P   
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG----GLPDSF 472

Query: 560 RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYK 619
                L  +D+SRN F+G +P +   SL  +M      + L     +G            
Sbjct: 473 GS-KRLENLDLSRNQFSGAVPRK-LGSLSELM-----QLKLSENKLSGE----------- 514

Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
            +  E+     +  ++DLS+N+  G IP    ++  L  L+ S N L GEIP  L ++ +
Sbjct: 515 -IPDELSSCKKL-VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCG 716
           L  +N+S N L G +P    F +    +  GN+ LCG
Sbjct: 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  229 bits (585), Expect = 2e-63
 Identities = 176/568 (30%), Positives = 292/568 (51%), Gaps = 36/568 (6%)

Query: 20  SWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFN 79
           +WN   D C W GI C+  +  V+ +DLS   + G +  +S +F L ++Q +NL+ N  +
Sbjct: 50  NWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLS 106

Query: 80  GTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH--TFN 137
           G      F   + L +LNLS + F+G +P     +  L  LDLS+++   +      +F+
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 138 NLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLR 197
           +L       + L L    +   +P+SL NL+S  L  L+L +  L G+ P ++     L+
Sbjct: 165 SL-------KVLDLGGNVLVGKIPNSLTNLTS--LEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 198 QLTLSDNGLLTGNLPTS-NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG 256
            + L  N L +G +P      + L  LDL     +G IP ++GNL++L++L LY     G
Sbjct: 216 WIYLGYNNL-SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
            +P S+ +L++L  L+L DN  SGE P++   L  L  + L   NFTG++P++  +L +L
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334

Query: 317 SLLELSRNQFVGQLPCH-ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
            +L+L  N+F G++P +      L+ L L  N L G IP     L +S NL +L L +N 
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE---GLCSSGNLFKLILFSNS 391

Query: 376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQ-RLP--FILSSRIRFLSVSDNKLTGEFP 432
           L G+I      P    +   LR + +Q N     LP  F     + FL +S+N L G   
Sbjct: 392 LEGEI------PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL 492
           S   ++ +++ L+L+ N   G +P    +   L  LDL +NQF G++P+      +L+ L
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIY 552
            L++N+L G++P  L++C  L  LD+ +N+++   P   + +P L  L L  N   G I 
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 553 NNVPSIKRPFPELRIIDISRNGFTGLLP 580
            N+ +++     L  ++IS N   G LP
Sbjct: 565 KNLGNVE----SLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  168 bits (426), Expect = 6e-43
 Identities = 152/507 (29%), Positives = 229/507 (45%), Gaps = 95/507 (18%)

Query: 214 SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
           SNW+S        +  + G    T  N   +  +DL      G++ +++  L  +  +NL
Sbjct: 49  SNWNS-----SADVCLWQGI---TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100

Query: 274 EDNQFSGEFP-DVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPC 332
            +NQ SG  P D+F   S L  ++L++ NFTG +P  +  +  L  L+LS N   G++P 
Sbjct: 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPN 158

Query: 333 H-ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERI 391
              S   L  L LGGN L G+IP+ L NL++ E L    L++N+L GQI      P E  
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT---LASNQLVGQI------PRE-- 207

Query: 392 SSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
                  L    +L            +++ +  N L+GE P  I  L+++ +L+L  N+L
Sbjct: 208 -------LGQMKSL------------KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 452 SGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511
           +G IP  L N  +L  L L +N+  G IP        L++L+L+DN L G++P  +    
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
           +LE+L + +N      P    +LPRLQVL L SN F G I  N+         L ++D+S
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN----NLTVLDLS 364

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
            N  TG +P                    + + S+G                      N+
Sbjct: 365 TNNLTGEIP--------------------EGLCSSG----------------------NL 382

Query: 632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV 691
           F  I  SN+  EG IPK +G   SL+ +    N   GE+P E T L  +  L++S N L 
Sbjct: 383 FKLILFSNS-LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 692 GPIPQGK------QFDSFQNDSFIGNL 712
           G I   K      Q  S   + F G L
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGL 468

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  107 bits (269), Expect = 7e-24
 Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 47/336 (13%)

Query: 42  VIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFS 101
           +I LDLS + L G +     +  L +L+ L+L  N+F G KI        +L  L L  +
Sbjct: 286 LISLDLSDNSLSGEI--PELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSN 342

Query: 102 YFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE-------LRYLLLDNV 154
            FSG +P  + + + L  LDLS+            NNL   + E       L  L+L + 
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLST------------NNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 155 QMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLL------- 207
            +   +P SL    S   + L   +    GE P +    P +  L +S+N L        
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNS--FSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 208 ----------------TGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYV 251
                            G LP S  S  L  LDLS  +FSG +P  +G+L +L  L L  
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 252 CYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF 311
               G++P  LS+ K+L  L+L  NQ SG+ P  F  +  L+++ L+    +G++P +  
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 312 NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN 347
           N+  L  + +S N   G LP   + L ++   + GN
Sbjct: 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 3e-14
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L + +  L G  P+ I  L  ++ +NLS NS+ G IP  L +  SL +LDL  N F GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSL 507
           P+   +   L  LNLN N L G++P +L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 5e-11
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 634 TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGP 693
           +I+LS N   G IP  +G ++SL++L+ S+N   G IP  L  LT+L +LNL+ N L G 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 694 IP--------QGKQFDSFQNDSFIGNLGLCGFALTQQC 723
           +P            F+      F  N GLCG    + C
Sbjct: 506 VPAALGGRLLHRASFN------FTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 40/129 (31%), Positives = 52/129 (40%), Gaps = 28/129 (21%)

Query: 175 LSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKI 234
           L L N  LRG  P DI     L+ + LS N +                         G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSI------------------------RGNI 458

Query: 235 PDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTR 294
           P ++G++  L+ LDL    F+G +P SL  L  L +LNL  N  SG  P   G       
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL---- 514

Query: 295 ISLAHLNFT 303
           +  A  NFT
Sbjct: 515 LHRASFNFT 523

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 32/82 (39%), Positives = 42/82 (51%)

Query: 468 LDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAF 527
           L L     RG IP   SK   L ++NL+ N + G +PPSL +   LEVLD+  N  N + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 528 PYWTATLPRLQVLVLRSNSFHG 549
           P     L  L++L L  NS  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI 694
           + L N    G IP ++ KL  L+ +N S N +RG IP  L S+T+L VL+LS+N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 695 PQ 696
           P+
Sbjct: 483 PE 484

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.2 bits (143), Expect = 4e-09
 Identities = 82/252 (32%), Positives = 114/252 (45%), Gaps = 21/252 (8%)

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
           +L NL  L  L+L  N+      ++   L+ LT + L + N T   PL     + L  L+
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELD 146

Query: 321 LSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ 379
           LS N+ +  LP     LP L +L L  N L   +P  L NLS   NL  LDLS NK++  
Sbjct: 147 LSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS---NLNNLDLSGNKIS-- 199

Query: 380 IFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS--SRIRFLSVSDNKLTGEFPSSICN 437
                  P E      L  LD+ +N +  L   LS    +  L +S+NKL  + P SI N
Sbjct: 200 -----DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253

Query: 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497
           LS +E L+LSNN +S      L +  +L  LDL  N    ++P I      L+   L + 
Sbjct: 254 LSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLL--LLLELLLNL 309

Query: 498 ELEGKLPPSLAN 509
            L  K      N
Sbjct: 310 LLTLKALELKLN 321

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 7e-09
 Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 21  WNKDGDCCS-----WDGIIC--DEMTGH--VIGLDLSSSWLLGTLHPNSTLFLLHHLQKL 71
           WN  GD C      W G  C  D   G   + GL L +  L G + PN  +  L HLQ +
Sbjct: 392 WN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PN-DISKLRHLQSI 447

Query: 72  NLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL 122
           NL+ N   G  I  + G  T L  L+LS++ F+G +P  + +L+ L  L+L
Sbjct: 448 NLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 9e-09
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ 315
           G +P  +S L+ L  +NL  N   G  P   G+++ L  + L++ +F G +P S   LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 316 LSLLELSRNQFVGQLPCHASCLPL 339
           L +L L+ N   G++P       L
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 28/85 (32%), Positives = 45/85 (52%)

Query: 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF 282
           L L      G IP+ I  LR L+ ++L      G +P SL ++  L VL+L  N F+G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 283 PDVFGNLSKLTRISLAHLNFTGQLP 307
           P+  G L+ L  ++L   + +G++P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 271 LNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQL 330
           L L++    G  P+    L  L  I+L+  +  G +P S  ++T L +L+LS N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 331 PCHASCL-PLSHLKLGGNFLDGRIPSWL 357
           P     L  L  L L GN L GR+P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 65/225 (28%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 161 PSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPL 220
                NL +   +     N         ++     L  L L +N +           S L
Sbjct: 83  LDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 221 RILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG 280
           + LDLS  K    +P  + NL +LK LDL        +P  LSNL  L  L+L  N+ S 
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS- 199

Query: 281 EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLS 340
           + P     LS L  + L+  N   +L  S  NL  LS LELS N+         +   L 
Sbjct: 200 DLPPEIELLSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258

Query: 341 HLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQ 385
            L L  N +   I S    L +  NL ELDLS N L+  +  +  
Sbjct: 259 TLDLSNNQI-SSISS----LGSLTNLRELDLSGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 27/88 (30%), Positives = 41/88 (46%)

Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
           I+ L L N  L G IP  ++    L  ++L  N  RG+IP        L  L+L+ N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 501 GKLPPSLANCGDLEVLDVGNNKINDAFP 528
           G +P SL     L +L++  N ++   P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
            ++ L +S+N+LT     +   L  ++ L+LS N+L+ + P+  +   SL  LDL  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 34/231 (14%)

Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL 321
           L+    L  L+L DN    +   V  +L + + +    LN  G              L  
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG--------------LGD 122

Query: 322 SRNQFVGQLPCHASCLPLSHLKLGGNFLDGR-IPSWLFNLSTSENLVELDLSNNKLTGQI 380
              + + +         L  L LG N L+G    +    L  + +L EL+L+NN +    
Sbjct: 123 RGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181

Query: 381 FQLDQWPVERISSVELRHLDVQSNLLQR-----LPFILSS--RIRFLSVSDNKLTGEFPS 433
            +         ++  L  LD+ +N L       L   L+S   +  L++ DN LT    +
Sbjct: 182 IRA--LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239

Query: 434 SICN-----LSTIEYLNLSNNSL----SGMIPQCLANFDSLSLLDLRKNQF 475
           ++ +       ++  L+LS N +    +  + + LA  +SL  LDLR N+F
Sbjct: 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 63/234 (26%), Positives = 98/234 (41%), Gaps = 22/234 (9%)

Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG---QLPLSAFNLTQLSLLEL 321
           L  L  ++L  ++   E PD    LS  T +    L+      +LP S   L +L  L++
Sbjct: 633 LTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688

Query: 322 SRNQFVGQLPCHASCLPLSHLKLGG-----NFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
           SR + +  LP   +   L  L L G     +F D  I + +  L   E  +E   SN +L
Sbjct: 689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFPSNLRL 746

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC 436
              + +L       +  ++   L  +   L  L  +LS  +  L +SD     E PSSI 
Sbjct: 747 E-NLDEL------ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799

Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
           NL  +E+L + N      +P  + N +SL  LDL       + P I +   DL 
Sbjct: 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLN 852

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499
           ++ L+LSNN L+ +         +L +LDL  N      P+ FS    L +L+L+ N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
            ++DLSNNR   +       L +LK+L+ S N L    P   + L +L  L+LS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
           L +L+L++N L      +     +L+VLD+  N +    P   + LP L+ L L  N+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 18/59 (30%), Positives = 24/59 (40%)

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQF 278
           L+ LDLS  + +         L +LK LDL         P + S L  L  L+L  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 63/289 (21%), Positives = 92/289 (31%), Gaps = 74/289 (25%)

Query: 265 LKQLTVLNLEDNQFS-GEFPDVFGNL---SKLTRISLAHLNFTG------QLPLSAF-NL 313
           L  L VL LE N         +   L     L  + L  LN TG      Q  L      
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCL-SLNETGRIPRGLQSLLQGLTKG 80

Query: 314 TQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN 373
             L  L+LS N           C  L                   +L  S +L EL L+N
Sbjct: 81  CGLQELDLSDNAL-----GPDGCGVLE------------------SLLRSSSLQELKLNN 117

Query: 374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
           N L  +          R+ +  L+               L   +  L +  N+L G    
Sbjct: 118 NGLGDRG--------LRLLAKGLKD--------------LPPALEKLVLGRNRLEGASCE 155

Query: 434 SICNL----STIEYLNLSNNSLSG----MIPQCLANFDSLSLLDLRKNQFR----GSIPQ 481
           ++         ++ LNL+NN +       + + L    +L +LDL  N        ++ +
Sbjct: 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215

Query: 482 IFSKCYDLVALNLNDNELEGK-----LPPSLANCGDLEVLDVGNNKIND 525
             +    L  LNL DN L            L+    L  L +  N I D
Sbjct: 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	801
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.49
PLN03150	623	hypothetical protein; Provisional	99.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.65
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	97.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.63
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.37
PRK15386	426	type III secretion protein GogB; Provisional	97.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.17
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.07
KOG4341	483	consensus F-box protein containing LRR [General fu	97.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.67
KOG4308	478	consensus LRR-containing protein [Function unknown	93.61
KOG4308	478	consensus LRR-containing protein [Function unknown	92.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.84
smart00370	26	LRR Leucine-rich repeats, outliers.	84.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.04
smart00370	26	LRR Leucine-rich repeats, outliers.	84.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.61
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.57

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-69  Score=658.07  Aligned_cols=565  Identities=32%  Similarity=0.533  Sum_probs=401.8

Q ss_pred             CCCCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCccccc-ccCCCCCC
Q 044830           16 PKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLT   94 (801)
Q Consensus        16 ~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~~l~~L~   94 (801)
                      ..+.+|+.+.+||.|+||.|+. .++|+.|||+++++.|.+++  .+..+++|++|+|++|++.+. +|.. +..+++|+
T Consensus        46 ~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~  121 (968)
T PLN00113         46 KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLR  121 (968)
T ss_pred             ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCC
Confidence            3578998888999999999986 47999999999999998877  889999999999999999765 5654 45899999


Q ss_pred             EEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccE
Q 044830           95 HLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLIS  174 (801)
Q Consensus        95 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~  174 (801)
                      +|+|++|.+++.+|.  +.+++|++|++++|.  +.   +.+|..++++++|++|++++|.+.+..|..+.++  ++|++
T Consensus       122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~  192 (968)
T PLN00113        122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--LS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL--TSLEF  192 (968)
T ss_pred             EEECcCCccccccCc--cccCCCCEEECcCCc--cc---ccCChHHhcCCCCCEEECccCcccccCChhhhhC--cCCCe
Confidence            999999999887774  457788888888772  22   3445555556666666666655555555555555  55555


Q ss_pred             EEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccC
Q 044830          175 LSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF  254 (801)
Q Consensus       175 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  254 (801)
                      |+|++|.+.+.+|..+.++++|++|++++                        |.+++.+|..++++++|++|++++|.+
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~------------------------n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGY------------------------NNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcC------------------------CccCCcCChhHhcCCCCCEEECcCcee
Confidence            55555555544444444444444444444                        444445555555566666666666666


Q ss_pred             cccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC
Q 044830          255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA  334 (801)
Q Consensus       255 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~  334 (801)
                      .+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            55555556666666666666666655555555566666666666666655555555555556666555555554444333


Q ss_pred             -CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc
Q 044830          335 -SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL  413 (801)
Q Consensus       335 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  413 (801)
                       .+++|+.|++++|.+.+.+|..+..   +++                                                
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~---~~~------------------------------------------------  357 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGK---HNN------------------------------------------------  357 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhC---CCC------------------------------------------------
Confidence             4444444444444444444444433   333                                                


Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                         |+.|++++|++++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..|..++.|+.|+
T Consensus       358 ---L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        358 ---LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             ---CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence               44445555555555566666666677777777777766776677777777777777777777777777777777777


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      +++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+    ..+++|+.|+|++|
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N  509 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL----GSLSELMQLKLSEN  509 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh----hhhhccCEEECcCC
Confidence            77777777777666677777777777777776666654 34678888888888877666554    67888899999999


Q ss_pred             cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830          574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL  653 (801)
Q Consensus       574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  653 (801)
                      ++++.+|..+ .+                                          ++.|++|||++|.+++.+|..++.+
T Consensus       510 ~l~~~~p~~~-~~------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        510 KLSGEIPDEL-SS------------------------------------------CKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             cceeeCChHH-cC------------------------------------------ccCCCEEECCCCcccccCChhHhCc
Confidence            9988888652 21                                          4567899999999999999999999


Q ss_pred             ccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCC
Q 044830          654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFAL  719 (801)
Q Consensus       654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l  719 (801)
                      ++|+.|+|++|+++|.+|..+..+++|+.|++++|+++|.+|..++|.+|...+|.||+++||.+.
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~  612 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDT  612 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999998653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-56  Score=541.85  Aligned_cols=516  Identities=32%  Similarity=0.509  Sum_probs=370.6

Q ss_pred             CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCC-cCCCCCCEEeCCCCcCCCccccCchhHhhcCCC
Q 044830           66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQI-SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLT  144 (801)
Q Consensus        66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~  144 (801)
                      .+++.|+|++|.+.+. ++..|..+++|++|+|++|.+++.+|..+ ..+++|++|++++|                   
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-------------------  128 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-------------------  128 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-------------------
Confidence            3577777777777665 55667777777777777777776666543 36666666666666                   


Q ss_pred             CCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEE
Q 044830          145 ELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRIL  223 (801)
Q Consensus       145 ~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L  223 (801)
                                .+.+.+|.  ..+  ++|++|+|++|.+.+.+|..++++++|++|++++| ...+.+|..+ .+++|++|
T Consensus       129 ----------~l~~~~p~--~~l--~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        129 ----------NFTGSIPR--GSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             ----------ccccccCc--ccc--CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCee
Confidence                      22222221  112  44555555555555555555555555555555554 2222222222 33444444


Q ss_pred             EccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeee
Q 044830          224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT  303 (801)
Q Consensus       224 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  303 (801)
                      ++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            44444444455555555666666666666655555555555556666666555555555555555555555555555555


Q ss_pred             eeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccccccc
Q 044830          304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQL  383 (801)
Q Consensus       304 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~  383 (801)
                      +.+|..+.++++|++|++++|.+                       .+.+|..+..   +++|+.|++++|.+++..|..
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l-----------------------~~~~p~~~~~---l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSL-----------------------SGEIPELVIQ---LQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCee-----------------------ccCCChhHcC---CCCCcEEECCCCccCCcCChh
Confidence            55555555555555555555544                       4455555444   556666666666655444432


Q ss_pred             CCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCC
Q 044830          384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD  463 (801)
Q Consensus       384 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~  463 (801)
                      . .                          .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..++
T Consensus       328 ~-~--------------------------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        328 L-T--------------------------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             H-h--------------------------cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence            2 1                          134677777777888878888899999999999999999999999999999


Q ss_pred             CCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEcc
Q 044830          464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR  543 (801)
Q Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  543 (801)
                      +|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|++.+.++..+..+++|+.|+++
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchh
Q 044830          544 SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL  623 (801)
Q Consensus       544 ~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (801)
                      +|++.+.+|..+     ..++|+.||+++|++++.+|..+ .+                                     
T Consensus       461 ~n~~~~~~p~~~-----~~~~L~~L~ls~n~l~~~~~~~~-~~-------------------------------------  497 (968)
T PLN00113        461 RNKFFGGLPDSF-----GSKRLENLDLSRNQFSGAVPRKL-GS-------------------------------------  497 (968)
T ss_pred             CceeeeecCccc-----ccccceEEECcCCccCCccChhh-hh-------------------------------------
Confidence            999998777643     45899999999999999888542 22                                     


Q ss_pred             hhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCC-CCCC
Q 044830          624 EMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK-QFDS  702 (801)
Q Consensus       624 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~  702 (801)
                           ++.|+.|||++|++.+.+|+.++++++|++|+|++|.++|.+|..+..+++|+.|++++|+++|.+|... .+..
T Consensus       498 -----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  572 (968)
T PLN00113        498 -----LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES  572 (968)
T ss_pred             -----hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence                 3567899999999999999999999999999999999999999999999999999999999999999753 3444


Q ss_pred             cCcCcCCCCCCCCCC
Q 044830          703 FQNDSFIGNLGLCGF  717 (801)
Q Consensus       703 ~~~~~~~gn~~lcg~  717 (801)
                      +......+|+..+..
T Consensus       573 L~~l~ls~N~l~~~~  587 (968)
T PLN00113        573 LVQVNISHNHLHGSL  587 (968)
T ss_pred             cCEEeccCCcceeeC
Confidence            555566677655433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-36  Score=309.11  Aligned_cols=342  Identities=26%  Similarity=0.280  Sum_probs=191.6

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL  249 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  249 (801)
                      ++|+++++.+|.++ .+|.......+|+.|+|.+|.+.+..-.....++.|+.||||.|.|+.....+|..-.++++|+|
T Consensus       102 ~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L  180 (873)
T KOG4194|consen  102 PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL  180 (873)
T ss_pred             Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence            44444444444433 33333333344444444444222221111113444455555555554333334444455666666


Q ss_pred             ccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccccc
Q 044830          250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ  329 (801)
Q Consensus       250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  329 (801)
                      ++|.|+......|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|.+.-.--..|.++++|+.|.+..|.+...
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence            66666555555566666666666666666655555666666666666666665533234455666666666666666654


Q ss_pred             CCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCC
Q 044830          330 LPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR  408 (801)
Q Consensus       330 ~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  408 (801)
                      -...+ .+.++++|+|+.|+++..-..|+++   +++|+.|++|+|.|...-+..  |                      
T Consensus       261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg---Lt~L~~L~lS~NaI~rih~d~--W----------------------  313 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFG---LTSLEQLDLSYNAIQRIHIDS--W----------------------  313 (873)
T ss_pred             cCcceeeecccceeecccchhhhhhcccccc---cchhhhhccchhhhheeecch--h----------------------
Confidence            44444 6666666666666666555556666   667777777777665321111  1                      


Q ss_pred             CCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCC---ccccC
Q 044830          409 LPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP---QIFSK  485 (801)
Q Consensus       409 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~  485 (801)
                         ..+++|++|+|++|+++..-+.+|..+..|++|.|++|.++..-...|.++++|++|||++|.++..+-   ..|.+
T Consensus       314 ---sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  314 ---SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             ---hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence               123556666666666665555566666666666666666665555556666666666666666655443   23556


Q ss_pred             CCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEcc
Q 044830          486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR  543 (801)
Q Consensus       486 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  543 (801)
                      +++|+.|++.+|++..+....|.++..|++|||.+|.|..+-|.+|..+ .|+.|.+.
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            6666666666666665545566666666666666666666666666666 66666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-35  Score=302.78  Aligned_cols=368  Identities=20%  Similarity=0.202  Sum_probs=194.0

Q ss_pred             CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830          219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA  298 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  298 (801)
                      .-+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            3455666666666655666666677777777666665 455544444556666666666666656666666666666666


Q ss_pred             CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcc
Q 044830          299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT  377 (801)
Q Consensus       299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~  377 (801)
                      .|.++..--..+..-.++++|+|++|.|+..-...+ .+.+|..|.|+.|.++ .+|...+.  +++.|+.|+|..|+| 
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk--~L~~L~~LdLnrN~i-  233 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFK--RLPKLESLDLNRNRI-  233 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhh--hcchhhhhhccccce-
Confidence            666664333334444566666666666664444333 4445555555555555 33332221  244455555544443 


Q ss_pred             ccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCc
Q 044830          378 GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ  457 (801)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  457 (801)
                                                                        ...--..|.++++|+.|.+..|.+...-..
T Consensus       234 --------------------------------------------------rive~ltFqgL~Sl~nlklqrN~I~kL~DG  263 (873)
T KOG4194|consen  234 --------------------------------------------------RIVEGLTFQGLPSLQNLKLQRNDISKLDDG  263 (873)
T ss_pred             --------------------------------------------------eeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence                                                              321122344455555555555555544444


Q ss_pred             cccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCC
Q 044830          458 CLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL  537 (801)
Q Consensus       458 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  537 (801)
                      +|.++.++++|+|..|++...-.+++-+++.|+.|++++|.|..+.++++..+++|++|+|++|+++...+..|..+..|
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            55555555555555555554444444555555555555555555555555555555555555555555555555555555


Q ss_pred             CEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEE
Q 044830          538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILT  617 (801)
Q Consensus       538 ~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (801)
                      ++|+|++|++.-.-...    +..+.+|+.|||++|.+++.|-+..                                  
T Consensus       344 e~LnLs~Nsi~~l~e~a----f~~lssL~~LdLr~N~ls~~IEDaa----------------------------------  385 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGA----FVGLSSLHKLDLRSNELSWCIEDAA----------------------------------  385 (873)
T ss_pred             hhhcccccchHHHHhhH----HHHhhhhhhhcCcCCeEEEEEecch----------------------------------
Confidence            55555555544222111    2345555555555555554433210                                  


Q ss_pred             eccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCc
Q 044830          618 YKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLS  686 (801)
Q Consensus       618 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  686 (801)
                            ..+..++.|+.|+|.+|++..+.-.+|..+.+|+.|||.+|.|-..-|.+|..+ .|+.|-+.
T Consensus       386 ------~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  386 ------VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ------hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence                  001123445555555555554444555555555555555555555555555555 55555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4e-38  Score=310.36  Aligned_cols=468  Identities=25%  Similarity=0.346  Sum_probs=292.8

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEE
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLD  248 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  248 (801)
                      ..++.+.+++|.+. .+...+.++..|.+|++.+|....  .|+.+ .+..++.++.++|+++ .+|+.+..+.+|+.++
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            45777777777776 344556777777777777773322  33333 5666677777777776 6677777777777777


Q ss_pred             cccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccc
Q 044830          249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG  328 (801)
Q Consensus       249 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~  328 (801)
                      +++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|++... |....+++.|++||...|-+..
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~t  197 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLET  197 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhc
Confidence            7777766 45666777777777777777776 4566666677777777777777643 3333347777777777766653


Q ss_pred             cCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCC
Q 044830          329 QLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR  408 (801)
Q Consensus       329 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  408 (801)
                      ..|....+.+|+.|++..|++. .+| .|..   +..|+++.++.|.+. .+|......+.     ++..||+++|+++.
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g---cs~L~Elh~g~N~i~-~lpae~~~~L~-----~l~vLDLRdNklke  266 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLP-EFPG---CSLLKELHVGENQIE-MLPAEHLKHLN-----SLLVLDLRDNKLKE  266 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCC-CCCc---cHHHHHHHhcccHHH-hhHHHHhcccc-----cceeeecccccccc
Confidence            3333336666777777777765 455 3333   566677777776664 22222211222     56666667776666


Q ss_pred             CCCCc--cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc--------------------------------
Q 044830          409 LPFIL--SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM--------------------------------  454 (801)
Q Consensus       409 ~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--------------------------------  454 (801)
                      +|...  +.+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+...                                
T Consensus       267 ~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~  344 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT  344 (565)
T ss_pred             CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence            66443  456666667666666 345566666 666666666654210                                


Q ss_pred             ------CCccc---cCCCCCCEEeCCCCcccccCCccccCC--CCccEEECCCCcCCCCCCccccCCCCCcE-EeCCCCc
Q 044830          455 ------IPQCL---ANFDSLSLLDLRKNQFRGSIPQIFSKC--YDLVALNLNDNELEGKLPPSLANCGDLEV-LDVGNNK  522 (801)
Q Consensus       455 ------~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~Ls~n~  522 (801)
                            .+..+   ....+.+.|++++-+++....+.|...  .-....+++.|++. .+|..+..+..+.. +++++|+
T Consensus       345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence                  00000   111244555555555552222223211  12556677777766 55665555544443 3444444


Q ss_pred             CCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccc
Q 044830          523 INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY  602 (801)
Q Consensus       523 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  602 (801)
                      + +.+|..+..+++|+.|+|++|.+..     +|..++.+-.|+.||+|.|+|. .+|..+ ..                
T Consensus       424 i-sfv~~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~-y~----------------  479 (565)
T KOG0472|consen  424 I-SFVPLELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFR-MLPECL-YE----------------  479 (565)
T ss_pred             c-ccchHHHHhhhcceeeecccchhhh-----cchhhhhhhhhheecccccccc-cchHHH-hh----------------
Confidence            4 6777778888888889998887763     3333467777888999988886 666432 11                


Q ss_pred             cccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCe
Q 044830          603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSV  682 (801)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  682 (801)
                                                +..++.+-.++|++....|..+++|.+|..|||.+|.+. .+|..++++++|++
T Consensus       480 --------------------------lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h  532 (565)
T KOG0472|consen  480 --------------------------LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH  532 (565)
T ss_pred             --------------------------HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence                                      122445556679998777777999999999999999998 78999999999999


Q ss_pred             EeCcCCcceecCCCC--CCCCCcCcCcCCCC
Q 044830          683 LNLSFNQLVGPIPQG--KQFDSFQNDSFIGN  711 (801)
Q Consensus       683 L~ls~N~l~g~iP~~--~~~~~~~~~~~~gn  711 (801)
                      |++++|++.  .|..  ..-+|..-.+|.++
T Consensus       533 LeL~gNpfr--~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  533 LELDGNPFR--QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             EEecCCccC--CCHHHHhccChHHHHHHhcc
Confidence            999999998  5543  22233333445544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6e-38  Score=309.11  Aligned_cols=482  Identities=29%  Similarity=0.360  Sum_probs=275.0

Q ss_pred             EEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEe
Q 044830           42 VIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALD  121 (801)
Q Consensus        42 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~  121 (801)
                      ...+++++|.+. .+.+  .+.++..+.+|++++|++..  .|++++.+..++.|+.++|+++ .+|..+..+..|+.|+
T Consensus        47 l~~lils~N~l~-~l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchh-hccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            445566666654 2233  56666667777777766643  5556666777777777777666 4566666666677776


Q ss_pred             CCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEec
Q 044830          122 LSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTL  201 (801)
Q Consensus       122 Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  201 (801)
                      .++|.  +    ..++..++.+..|..++..+|+++.. |..+..+  .++..+++.+|.+....|. .-+++.|++||.
T Consensus       121 ~s~n~--~----~el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~--~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~  190 (565)
T KOG0472|consen  121 CSSNE--L----KELPDSIGRLLDLEDLDATNNQISSL-PEDMVNL--SKLSKLDLEGNKLKALPEN-HIAMKRLKHLDC  190 (565)
T ss_pred             ccccc--e----eecCchHHHHhhhhhhhccccccccC-chHHHHH--HHHHHhhccccchhhCCHH-HHHHHHHHhccc
Confidence            66662  1    34445555666666666666655443 3334444  5555566666655533222 222555555555


Q ss_pred             cCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCccccc-CCCCCCEEEcCCCCCc
Q 044830          202 SDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS-NLKQLTVLNLEDNQFS  279 (801)
Q Consensus       202 s~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~  279 (801)
                      ..| .. +.+|... .+.+|+.|+|..|.+. .+| .|..+..|++|.+..|.+. .+|.+.. ++..+.+||+.+|+++
T Consensus       191 ~~N-~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  191 NSN-LL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             chh-hh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence            555 22 2233333 4455555555555554 333 4455555555555555544 2333322 4555555555555554


Q ss_pred             cccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcC
Q 044830          280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN  359 (801)
Q Consensus       280 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  359 (801)
                       ..|+.+.-+.+|++||+++|.++ .+|..++++ .|+.|.+.+|++.                        ++...+-+
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr------------------------TiRr~ii~  318 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR------------------------TIRREIIS  318 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH------------------------HHHHHHHc
Confidence             44444545555555555555554 344445554 4555555555443                        12111111


Q ss_pred             CCCCCCccEEE-------ccCCCc-cccccccCCCCccc-ccceeeeEEEecCCCCCCCCCCcc-----ccccEEEecCC
Q 044830          360 LSTSENLVELD-------LSNNKL-TGQIFQLDQWPVER-ISSVELRHLDVQSNLLQRLPFILS-----SRIRFLSVSDN  425 (801)
Q Consensus       360 l~~~~~L~~L~-------Ls~n~l-~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~L~~n  425 (801)
                      .....-|++|.       ++.-.= +...+....+.++. ....+.+.|++++-+++.+|...+     .-++..+++.|
T Consensus       319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN  398 (565)
T KOG0472|consen  319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN  398 (565)
T ss_pred             ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccc
Confidence            11000111110       000000 00000000011110 011255667777777777764332     23667888888


Q ss_pred             CCCCCCccccccCCCCCE-EECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC
Q 044830          426 KLTGEFPSSICNLSTIEY-LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP  504 (801)
Q Consensus       426 ~l~~~~~~~l~~l~~L~~-L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  504 (801)
                      ++. ++|..+..+..+.+ +.+++|.++ .+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|.+. .+|
T Consensus       399 qL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP  474 (565)
T KOG0472|consen  399 QLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP  474 (565)
T ss_pred             hHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence            887 66776666555444 445555554 77778888888888888888776 67888888888888888888887 677


Q ss_pred             ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHH
Q 044830          505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPAR  582 (801)
Q Consensus       505 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~  582 (801)
                      ..+.....++.+-.++|++....+..+.++.+|++|+|.+|.+..     +|..++++.+|++|++++|+|.  .|.+
T Consensus       475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-----IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-----IPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-----CChhhccccceeEEEecCCccC--CCHH
Confidence            777777777777778888887777778888889999999888763     3445589999999999999997  4543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-34  Score=312.40  Aligned_cols=482  Identities=26%  Similarity=0.360  Sum_probs=266.5

Q ss_pred             EEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccE
Q 044830           95 HLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLIS  174 (801)
Q Consensus        95 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~  174 (801)
                      .+|++.+.+. .+|..+-.-..++.|+++.|.                             +.....+.+...  -+|+.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~-----------------------------~l~~pl~~~~~~--v~L~~   49 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNS-----------------------------LLSRPLEFVEKR--VKLKS   49 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccc-----------------------------cccCchHHhhhe--eeeEE
Confidence            3566666665 556555555557777777762                             111111111111  33666


Q ss_pred             EEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEEccccc
Q 044830          175 LSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY  253 (801)
Q Consensus       175 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  253 (801)
                      |++++|.+. ..|..+..+.+|+.|+++.|.+..  .|... .+.+|++|.|.+|.+. ..|..+..+++|+.|+++.|.
T Consensus        50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~  125 (1081)
T KOG0618|consen   50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNH  125 (1081)
T ss_pred             eeccccccc-cCCchhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhc
Confidence            666666555 455566666666666666663322  33333 5666677777766665 677777777888888888887


Q ss_pred             CcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCC
Q 044830          254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH  333 (801)
Q Consensus       254 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~  333 (801)
                      +. .+|..+..++.++.+..++|.....    ++... ++.+++..|.+.+.++..+..++.  .|++.+|.+.  ....
T Consensus       126 f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dl  195 (1081)
T KOG0618|consen  126 FG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDL  195 (1081)
T ss_pred             cC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhh
Confidence            76 5677777777777777777722212    22222 677777777777777766666655  6777777765  2222


Q ss_pred             CCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc
Q 044830          334 ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL  413 (801)
Q Consensus       334 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  413 (801)
                      ..+.+|+.+....|++....-       ..++|+.|+.++|.++...+..                             .
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~-------~g~~l~~L~a~~n~l~~~~~~p-----------------------------~  239 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEI-------SGPSLTALYADHNPLTTLDVHP-----------------------------V  239 (1081)
T ss_pred             hhccchhhhhhhhcccceEEe-------cCcchheeeeccCcceeecccc-----------------------------c
Confidence            256666666666666542111       1356666666666655211111                             1


Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +.+++++++++|+++ .+|++++.+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. -+|.....+++|+.|+
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            334555555555555 23455555555555555555554 34444444555555555555555 3344444455555555


Q ss_pred             CCCCcCCCCCCc-cccCCCC-CcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEcc
Q 044830          494 LNDNELEGKLPP-SLANCGD-LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS  571 (801)
Q Consensus       494 L~~n~l~~~~~~-~l~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs  571 (801)
                      |..|++. ..|+ .+.-... |..|+.+.|++.......-...+.|+.|++.+|.+++.....+    .++++|+.|+|+
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l----~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL----VNFKHLKVLHLS  391 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh----ccccceeeeeec
Confidence            5555554 2222 2222221 4444445555443332222234455555555555554433332    445555555555


Q ss_pred             CCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccc
Q 044830          572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG  651 (801)
Q Consensus       572 ~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~  651 (801)
                      +|++. .+|+..+.+|..|..+..+.+.+..++.                   -.-.+..|++|...+|++. ..| ++.
T Consensus       392 yNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~-------------------tva~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  392 YNRLN-SFPASKLRKLEELEELNLSGNKLTTLPD-------------------TVANLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             ccccc-cCCHHHHhchHHhHHHhcccchhhhhhH-------------------HHHhhhhhHHHhhcCCcee-ech-hhh
Confidence            55553 4555555555544444333333222211                   0011455677888888887 556 788


Q ss_pred             ccccCceEeCcCcccccc-CCccccCCCCCCeEeCcCCc
Q 044830          652 KLSSLKLLNFSHNILRGE-IPVELTSLTALSVLNLSFNQ  689 (801)
Q Consensus       652 ~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~  689 (801)
                      +++.|+.+|+|.|+|+.. +|..... ++|++||+++|.
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            888888888888888743 4443333 788888888886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=9.7e-34  Score=307.19  Aligned_cols=505  Identities=25%  Similarity=0.283  Sum_probs=251.2

Q ss_pred             EEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCC
Q 044830           45 LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS  124 (801)
Q Consensus        45 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~  124 (801)
                      +|.+...+. .++.  .+..-..++.|+++.|-+...+ -+++....+|+.||+++|.+. ..|..+..+.+|+.|+++.
T Consensus         3 vd~s~~~l~-~ip~--~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPE--QILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSR   77 (1081)
T ss_pred             cccccccCc-ccch--hhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccch
Confidence            445555543 2332  3444455777788777665432 233455555788888877776 4566777777777777777


Q ss_pred             CcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCC
Q 044830          125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDN  204 (801)
Q Consensus       125 n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  204 (801)
                      |.+      ...|....++.+                          |+++.|.+|.+. ..|..+..+++|+.|++++|
T Consensus        78 n~i------~~vp~s~~~~~~--------------------------l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   78 NYI------RSVPSSCSNMRN--------------------------LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             hhH------hhCchhhhhhhc--------------------------chhheeccchhh-cCchhHHhhhcccccccchh
Confidence            731      122233444444                          444555444444 34555555555555555555


Q ss_pred             CCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccC
Q 044830          205 GLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFP  283 (801)
Q Consensus       205 ~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  283 (801)
                      ..  +.+|..+ .++.++.+..++|.....    ++... ++.+++..|.+.+.++..+..++.  .|+|.+|.+. .  
T Consensus       125 ~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--  192 (1081)
T KOG0618|consen  125 HF--GPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--  192 (1081)
T ss_pred             cc--CCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--
Confidence            21  1223222 444455555555511111    11111 556666666666555555555554  5666666655 1  


Q ss_pred             ccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCC
Q 044830          284 DVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTS  363 (801)
Q Consensus       284 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~  363 (801)
                      ..+..+.+|+.+....|++....    -..++|+.|+.++|.++ .........+|++++++.|+++ .+|+|+..   +
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~---~  263 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGA---C  263 (1081)
T ss_pred             hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eeccccccccceeeecchhhhh-cchHHHHh---c
Confidence            23455666666666666655321    13467777777777776 3223334456777777777777 56677776   7


Q ss_pred             CCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCE
Q 044830          364 ENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY  443 (801)
Q Consensus       364 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  443 (801)
                      .+|+.++..+|+++. +|... ..                          ..+|+.|.+..|++. .+|.....+++|++
T Consensus       264 ~nle~l~~n~N~l~~-lp~ri-~~--------------------------~~~L~~l~~~~nel~-yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  264 ANLEALNANHNRLVA-LPLRI-SR--------------------------ITSLVSLSAAYNELE-YIPPFLEGLKSLRT  314 (1081)
T ss_pred             ccceEecccchhHHh-hHHHH-hh--------------------------hhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence            778888888877742 22211 11                          123444444444443 23333344444444


Q ss_pred             EECcCCCCcccCCccccCCC-CCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCc
Q 044830          444 LNLSNNSLSGMIPQCLANFD-SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNK  522 (801)
Q Consensus       444 L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  522 (801)
                      |+|..|++....+..+.... +|..|+.+.|++.......=...+.|+.|.+.+|.++...-+.+.+..+|+.|+|++|+
T Consensus       315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            44444444422222222221 13444444444432111111123344444444444444433444444444455555544


Q ss_pred             CCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccc
Q 044830          523 INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY  602 (801)
Q Consensus       523 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  602 (801)
                      +.......+.++..|++|+|++|+++.     +|.....++.|++|-..+|++. ..|..                    
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~-~fPe~--------------------  448 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLL-SFPEL--------------------  448 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCcee-echhh--------------------
Confidence            444333444444444444444444431     1112234444444444444443 22310                    


Q ss_pred             cccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeee-ccccccccccCceEeCcCccccccCCccccCCCCCC
Q 044830          603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALS  681 (801)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  681 (801)
                                              ..++.|+.+|+|+|.++.. +|..... ++|++|||++|.-...--..|..+..+.
T Consensus       449 ------------------------~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~  503 (1081)
T KOG0618|consen  449 ------------------------AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLS  503 (1081)
T ss_pred             ------------------------hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhh
Confidence                                    1134556666666666532 2322222 5677777777764333334455555555


Q ss_pred             eEeCcCC
Q 044830          682 VLNLSFN  688 (801)
Q Consensus       682 ~L~ls~N  688 (801)
                      ..++.-|
T Consensus       504 ~~~i~~~  510 (1081)
T KOG0618|consen  504 QMDITLN  510 (1081)
T ss_pred             heecccC
Confidence            5655555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7.2e-33  Score=286.68  Aligned_cols=385  Identities=26%  Similarity=0.383  Sum_probs=234.7

Q ss_pred             cCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830           64 LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL  143 (801)
Q Consensus        64 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l  143 (801)
                      -++.++-.|+++|++++...|.....+++++.|.|....+. .+|..++.|.+|++|.+++|.  +.    .+-      
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~--L~----~vh------   71 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQ--LI----SVH------   71 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhh--hH----hhh------
Confidence            34556667777777776666766777777777777776665 456667777777777766662  11    111      


Q ss_pred             CCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCE
Q 044830          144 TELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRI  222 (801)
Q Consensus       144 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~  222 (801)
                                                                  ..+..++.|+.+.+.+|+.....+|..+ .+..|..
T Consensus        72 --------------------------------------------GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   72 --------------------------------------------GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             --------------------------------------------hhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence                                                        1122233333333333333333333332 4444444


Q ss_pred             EEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeee
Q 044830          223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF  302 (801)
Q Consensus       223 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  302 (801)
                      ||||+|++. ..|..+..-+++-.|+|++|+|..+...-|.+++.|-.|||++|++. .+|..+..+..|+.|+|++|.+
T Consensus       108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            444444444 44555555555555555555555322233445555555555555554 3444455555555555555554


Q ss_pred             eeeCCccCcCCCCCCEEEccccccc-ccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccc
Q 044830          303 TGQLPLSAFNLTQLSLLELSRNQFV-GQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI  380 (801)
Q Consensus       303 ~~~~p~~l~~l~~L~~L~l~~n~~~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~  380 (801)
                      ...--..+-.+++|++|.+++.+-+ ..+|..+ .+.+|..++++.|.+. .+|+.+..   +++|+.|+||+|+++...
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~---l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK---LRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh---hhhhheeccCcCceeeee
Confidence            4222222223445555555554332 2334444 5556666666666665 66776666   677777777777765211


Q ss_pred             cccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcc-cCCccc
Q 044830          381 FQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG-MIPQCL  459 (801)
Q Consensus       381 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l  459 (801)
                      ...                            ....+|++|+++.|+++ .+|++++.++.|+.|.+.+|+++- -+|..+
T Consensus       262 ~~~----------------------------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  262 MTE----------------------------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI  312 (1255)
T ss_pred             ccH----------------------------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence            111                            11357888888888888 788889999999999999988762 478888


Q ss_pred             cCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCE
Q 044830          460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV  539 (801)
Q Consensus       460 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  539 (801)
                      +++.+|+++..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|..+.-++.|+.||+..|.-.-..|..-..-.+|..
T Consensus       313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef  390 (1255)
T KOG0444|consen  313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF  390 (1255)
T ss_pred             hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence            88889999999988887 78888999999999999999887 67888888899999999988765555543333344444


Q ss_pred             EEc
Q 044830          540 LVL  542 (801)
Q Consensus       540 L~L  542 (801)
                      -++
T Consensus       391 YNI  393 (1255)
T KOG0444|consen  391 YNI  393 (1255)
T ss_pred             eec
Confidence            333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-31  Score=277.53  Aligned_cols=366  Identities=25%  Similarity=0.309  Sum_probs=260.2

Q ss_pred             cEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEE
Q 044830           41 HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVAL  120 (801)
Q Consensus        41 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L  120 (801)
                      -|+.+|+++|.++|.-.| .+...++.++.|.|....+..  +|+.++.+.+|++|.+++|++.. +-..++.|+.|+.+
T Consensus         8 FVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             eeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            589999999999965443 278899999999999988844  89999999999999999999873 45678899999999


Q ss_pred             eCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEe
Q 044830          121 DLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLT  200 (801)
Q Consensus       121 ~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  200 (801)
                      ++..|.  +.  ...+|..+.                        .+  ..|..|+|++|++. +.|..+..-+++-+|+
T Consensus        84 ~~R~N~--LK--nsGiP~diF------------------------~l--~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   84 IVRDNN--LK--NSGIPTDIF------------------------RL--KDLTILDLSHNQLR-EVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             hhhccc--cc--cCCCCchhc------------------------cc--ccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence            999883  21  123333333                        34  55666666666665 5666777777777888


Q ss_pred             ccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCc-
Q 044830          201 LSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS-  279 (801)
Q Consensus       201 Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-  279 (801)
                      ||+|++.+.+.+-+++++.|-.||||+|++. .+|..+..+.+|++|+|++|.+...--..+-.++.|++|.+++.+-+ 
T Consensus       133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             cccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            8887666655555558888888888888887 67888888999999999999877554455666778888888887643 


Q ss_pred             cccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcC
Q 044830          280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN  359 (801)
Q Consensus       280 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  359 (801)
                      ..+|.++..+.+|..+|++.|++. .+|..+.++++|+.|+|++|.++..-...-...+|+.|+++.|+++ .+|+.+..
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK  289 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCK  289 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhh
Confidence            347778888888888888888887 6788888888888888888888743222223345555666666555 45554444


Q ss_pred             CCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCC-CCccccccC
Q 044830          360 LSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTG-EFPSSICNL  438 (801)
Q Consensus       360 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l  438 (801)
                         ++.|+.|.+.+|+                                                   ++- -+|..++.+
T Consensus       290 ---L~kL~kLy~n~Nk---------------------------------------------------L~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  290 ---LTKLTKLYANNNK---------------------------------------------------LTFEGIPSGIGKL  315 (1255)
T ss_pred             ---hHHHHHHHhccCc---------------------------------------------------ccccCCccchhhh
Confidence               4444444444444                                                   331 256666666


Q ss_pred             CCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC
Q 044830          439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE  500 (801)
Q Consensus       439 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  500 (801)
                      ..|+++..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+..|.--
T Consensus       316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            66777777766665 66666666777777777777665 56666666677777777766543

>PLN03210 Resistant to P

Probab=99.90  E-value=1.9e-22  Score=246.28  Aligned_cols=347  Identities=26%  Similarity=0.288  Sum_probs=202.8

Q ss_pred             chhhhccCCCCccEEEccCCc------CccCCCccCCCCC-CCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCccc
Q 044830          161 PSSLLNLSSASLISLSLGNCF------LRGEFPIDIFHFP-FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGK  233 (801)
Q Consensus       161 ~~~l~~l~~~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  233 (801)
                      +..|..+  .+|+.|.+..+.      +...+|..+..++ +|+.|.+.++..  ..+|..+.+.+|++|+++++.+. .
T Consensus       551 ~~aF~~m--~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        551 ENAFKGM--RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNFRPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             HHHHhcC--ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcCCccCCcEEECcCcccc-c
Confidence            3445555  555655554332      1222344444443 366666655522  23444445555666666666554 3


Q ss_pred             CcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCC
Q 044830          234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL  313 (801)
Q Consensus       234 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  313 (801)
                      ++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            455555566666666665544334443 5555666666666655444555555666666666666554333444433 45


Q ss_pred             CCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccc
Q 044830          314 TQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS  393 (801)
Q Consensus       314 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  393 (801)
                      ++|+.|++++|...+.+|..  ..+|++|++++|.+. .+|..+    .+++|++|++.++.... +....         
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~----~l~~L~~L~l~~~~~~~-l~~~~---------  766 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL----RLENLDELILCEMKSEK-LWERV---------  766 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc----cccccccccccccchhh-ccccc---------
Confidence            55666666555443333322  234555555555543 344332    13445555544432110 00000         


Q ss_pred             eeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830          394 VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN  473 (801)
Q Consensus       394 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  473 (801)
                                ..+.......+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus       767 ----------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        767 ----------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             ----------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence                      00011111224678888888887777788888888899999998886555677655 6788888998887


Q ss_pred             cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCc
Q 044830          474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNS  546 (801)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~  546 (801)
                      .....+|..   .++|++|+|++|.++ .+|.++..+++|+.|++++|+-...+|.....+++|+.+++++|.
T Consensus       836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            655555543   357888888888887 578888888888888888865555566677788888888888874

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=5.5e-22  Score=242.28  Aligned_cols=270  Identities=21%  Similarity=0.256  Sum_probs=139.6

Q ss_pred             ccccCCCCCCEEEcccccC------cccCcccccCCC-CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCc
Q 044830          236 DTIGNLRDLKFLDLYVCYF------DGQVPASLSNLK-QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPL  308 (801)
Q Consensus       236 ~~l~~l~~L~~L~L~~n~l------~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  308 (801)
                      ..|.++++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. .+|..| ...+|++|++.++.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            4466667777776655432      223455555443 4666777666655 445555 3466677777766665 4555


Q ss_pred             cCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCc
Q 044830          309 SAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPV  388 (801)
Q Consensus       309 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  388 (801)
                      .+..+++|+.|+++++...+.+|....+++|+.|++++|.....+|..+..   +++|+.|++++|.....+|...    
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~---L~~L~~L~L~~c~~L~~Lp~~i----  701 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY---LNKLEDLDMSRCENLEILPTGI----  701 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc---cCCCCEEeCCCCCCcCccCCcC----
Confidence            556666677777766654445554445666666666666555556655554   5566666666554222222110    


Q ss_pred             ccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEE
Q 044830          389 ERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLL  468 (801)
Q Consensus       389 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  468 (801)
                                              .+++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|++|
T Consensus       702 ------------------------~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L  752 (1153)
T PLN03210        702 ------------------------NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDEL  752 (1153)
T ss_pred             ------------------------CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccc
Confidence                                    1345666666666544444432   345666777776665 344433 35566666


Q ss_pred             eCCCCcccc-------cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEE
Q 044830          469 DLRKNQFRG-------SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV  541 (801)
Q Consensus       469 ~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  541 (801)
                      .+.++....       ..+..+...++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|+
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~  831 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD  831 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence            665533210       011111223345555555554444445455555555555555443333333322 344444444


Q ss_pred             ccCC
Q 044830          542 LRSN  545 (801)
Q Consensus       542 L~~N  545 (801)
                      +++|
T Consensus       832 Ls~c  835 (1153)
T PLN03210        832 LSGC  835 (1153)
T ss_pred             CCCC
Confidence            4444

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=3.9e-25  Score=218.79  Aligned_cols=414  Identities=22%  Similarity=0.180  Sum_probs=247.4

Q ss_pred             CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCC-CCCccccCccccCCCCCcEeec
Q 044830          219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED-NQFSGEFPDVFGNLSKLTRISL  297 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L  297 (801)
                      .-..++|..|+|+...+..|+.+++|+.|||++|.|+.+-|++|..+++|..|.+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456788888888877777899999999999999999988899999998888877776 8888777778899999999999


Q ss_pred             cCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEE--EccCC
Q 044830          298 AHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVEL--DLSNN  374 (801)
Q Consensus       298 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L--~Ls~n  374 (801)
                      .-|++.......+..+++|..|.+.+|.+.......+ .+..++.+.+..|.+..           ..+|.++  ++..+
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----------dCnL~wla~~~a~~  216 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----------DCNLPWLADDLAMN  216 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----------ccccchhhhHHhhc
Confidence            8888887777888888999999988888874444344 67778888877776431           1122221  11111


Q ss_pred             CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc----cccccEEEecCCCCCCCCc-cccccCCCCCEEECcCC
Q 044830          375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL----SSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNN  449 (801)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n  449 (801)
                      .+.-   .+    ..     -.....+.+.++..+....    ..++..-..+.+..-+..| ..|..+++|++|+|++|
T Consensus       217 ~iet---sg----ar-----c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  217 PIET---SG----AR-----CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             hhhc---cc----ce-----ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence            1100   00    00     0000001111111111100    0111111112222222333 24666777777777777


Q ss_pred             CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC-----
Q 044830          450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN-----  524 (801)
Q Consensus       450 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-----  524 (801)
                      +++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|++|+|+...|..|..+..|..|++-.|.+.     
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence            777777777777777777777777776665666777777777777777777667777777777777777666543     


Q ss_pred             CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCc---cCcHHHHhhhhhhhccCCCCCccc
Q 044830          525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTG---LLPARYFQSLKAMMHGDNDDIDLD  601 (801)
Q Consensus       525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~---~~p~~~~~~l~~l~~~~~~~~~~~  601 (801)
                      .++.+|+.           ++...|..+.+-      -..++.++++++.+..   ..|++.  ++.          .-.
T Consensus       365 ~wl~~Wlr-----------~~~~~~~~~Cq~------p~~~~~~~~~dv~~~~~~c~~~ee~--~~~----------~s~  415 (498)
T KOG4237|consen  365 AWLGEWLR-----------KKSVVGNPRCQS------PGFVRQIPISDVAFGDFRCGGPEEL--GCL----------TSS  415 (498)
T ss_pred             HHHHHHHh-----------hCCCCCCCCCCC------CchhccccchhccccccccCCcccc--CCC----------CCC
Confidence            12222322           122222222221      2234555555554431   112110  000          000


Q ss_pred             ccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCC
Q 044830          602 YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALS  681 (801)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  681 (801)
                      ..+..-........++.++...-..++....++|++.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|+++++|.
T Consensus       416 ~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~  491 (498)
T KOG4237|consen  416 PCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS  491 (498)
T ss_pred             CCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence            000000000001111222222222233445678999999998 66766  77888 999999999988888899999999


Q ss_pred             eEeCcCC
Q 044830          682 VLNLSFN  688 (801)
Q Consensus       682 ~L~ls~N  688 (801)
                      +|-||||
T Consensus       492 tlilsyn  498 (498)
T KOG4237|consen  492 TLILSYN  498 (498)
T ss_pred             eeEEecC
Confidence            9999997

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=9.5e-24  Score=209.05  Aligned_cols=251  Identities=22%  Similarity=0.200  Sum_probs=142.2

Q ss_pred             CeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCC-CcCCCccccCchhHhhcCCCCCC
Q 044830           69 QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELR  147 (801)
Q Consensus        69 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~~l~~l~~L~  147 (801)
                      ..++|..|.|+.. .+..|+.+++||.||||+|.|+.+-|.+|.++..|..|-+-+ |  .+.   ..-...|+.+..|+
T Consensus        70 veirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N--kI~---~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   70 VEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN--KIT---DLPKGAFGGLSSLQ  143 (498)
T ss_pred             eEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC--chh---hhhhhHhhhHHHHH
Confidence            4445555555443 334455555555555555555555555555555554443333 3  111   11113444555555


Q ss_pred             EEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCc-------------------
Q 044830          148 YLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT-------------------  208 (801)
Q Consensus       148 ~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~-------------------  208 (801)
                      .|.+.-|.+.....+.|..+  +++..|.+..|.+...--..+..+..++.+.+..|....                   
T Consensus       144 rLllNan~i~Cir~~al~dL--~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDL--PSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHhcChhhhcchhHHHHHHh--hhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            55555555555555555555  555555555555543322344555555555554442100                   


Q ss_pred             ---------------cCCCCC--C-CCCCCCEEEccCccCcccCc-ccccCCCCCCEEEcccccCcccCcccccCCCCCC
Q 044830          209 ---------------GNLPTS--N-WSSPLRILDLSITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT  269 (801)
Q Consensus       209 ---------------~~~~~~--~-~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  269 (801)
                                     ..+.+.  . ....+..--.+.+...+..| ..|.++++|+.|+|++|+++++.+.+|..+..++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence                           000000  0 01111111112222223334 3477888888888888888888888888888888


Q ss_pred             EEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830          270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV  327 (801)
Q Consensus       270 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  327 (801)
                      +|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            8888888887666677888888888888888888777878888888888888777664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.2e-20  Score=213.48  Aligned_cols=263  Identities=26%  Similarity=0.332  Sum_probs=157.7

Q ss_pred             CCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccce
Q 044830          315 QLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV  394 (801)
Q Consensus       315 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  394 (801)
                      .-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|..      .++|++|++++|+++                 
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt-~LP~l------p~~Lk~LdLs~N~Lt-----------------  255 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-SLPAL------PPELRTLEVSGNQLT-----------------  255 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCC-CCCCC------CCCCcEEEecCCccC-----------------
Confidence            3455666666666 3443331 35666666666655 24431      345555555555554                 


Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                                   .++. .+++|+.|++++|.++ .+|..   ..+|+.|++++|+++. +|..   .++|+.|++++|+
T Consensus       256 -------------sLP~-lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~  313 (788)
T PRK15387        256 -------------SLPV-LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ  313 (788)
T ss_pred             -------------cccC-cccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCc
Confidence                         3321 2345666666666655 23332   2346666666666663 3331   3456777777776


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN  554 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  554 (801)
                      +++ +|..   ..+|+.|++++|++++ +|..   ..+|+.|++++|++++. |..   .++|+.|++++|++.+ +|. 
T Consensus       314 L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~-  379 (788)
T PRK15387        314 LAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPA-  379 (788)
T ss_pred             ccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Ccc-
Confidence            663 3332   2346666777777763 4431   23677777777777653 321   2466777777777763 221 


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceE
Q 044830          555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT  634 (801)
Q Consensus       555 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  634 (801)
                            ...+|+.|++++|++++ +|..                                              .+.|+.
T Consensus       380 ------l~~~L~~LdLs~N~Lt~-LP~l----------------------------------------------~s~L~~  406 (788)
T PRK15387        380 ------LPSGLKELIVSGNRLTS-LPVL----------------------------------------------PSELKE  406 (788)
T ss_pred             ------cccccceEEecCCcccC-CCCc----------------------------------------------ccCCCE
Confidence                  12467888888888773 4421                                              134678


Q ss_pred             EEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830          635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG  697 (801)
Q Consensus       635 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  697 (801)
                      ||+++|++++ +|...   .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|+|.+|..
T Consensus       407 LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        407 LMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             EEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            8888888874 56432   46778888888887 67888888888888888888888887753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2e-20  Score=211.51  Aligned_cols=268  Identities=25%  Similarity=0.327  Sum_probs=180.5

Q ss_pred             CCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEE
Q 044830          290 SKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVEL  369 (801)
Q Consensus       290 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L  369 (801)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.  .+++|++|++++|+++ .+|..      .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lt-sLP~l------p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLT-SLPVL------PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccC-cccCc------cccccee
Confidence            44678999999998 6787665  489999999999985 443  3578999999999998 45642      4578888


Q ss_pred             EccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCC
Q 044830          370 DLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN  449 (801)
Q Consensus       370 ~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  449 (801)
                      ++++|.++. +|..                              +.+|+.|++++|+++. +|.   ..++|+.|++++|
T Consensus       268 ~Ls~N~L~~-Lp~l------------------------------p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N  312 (788)
T PRK15387        268 SIFSNPLTH-LPAL------------------------------PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDN  312 (788)
T ss_pred             eccCCchhh-hhhc------------------------------hhhcCEEECcCCcccc-ccc---cccccceeECCCC
Confidence            888888762 2221                              1345555555555552 332   1245666666666


Q ss_pred             CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcch
Q 044830          450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPY  529 (801)
Q Consensus       450 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  529 (801)
                      ++++ +|..   ..+|+.|++++|.+++ +|..   ..+|+.|+|++|++++ +|..   ..+|+.|++++|++.+ +|.
T Consensus       313 ~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~  379 (788)
T PRK15387        313 QLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA  379 (788)
T ss_pred             cccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccc
Confidence            6653 2321   1245566666666653 3421   1356777777777763 3432   2456667777777764 343


Q ss_pred             hccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCC
Q 044830          530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD  609 (801)
Q Consensus       530 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  609 (801)
                      .   ..+|+.|++++|++.+ +|.       ..++|+.|++++|++++ +|..                           
T Consensus       380 l---~~~L~~LdLs~N~Lt~-LP~-------l~s~L~~LdLS~N~Lss-IP~l---------------------------  420 (788)
T PRK15387        380 L---PSGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLTS-LPML---------------------------  420 (788)
T ss_pred             c---ccccceEEecCCcccC-CCC-------cccCCCEEEccCCcCCC-CCcc---------------------------
Confidence            2   2467788888887774 221       13578899999999874 5631                           


Q ss_pred             ceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCC
Q 044830          610 QYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSL  677 (801)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  677 (801)
                                         +..|+.|++++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..+
T Consensus       421 -------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        421 -------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             -------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence                               123567899999998 689999999999999999999999888877544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.6e-18  Score=197.76  Aligned_cols=223  Identities=27%  Similarity=0.436  Sum_probs=107.9

Q ss_pred             eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830          397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR  476 (801)
Q Consensus       397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  476 (801)
                      +.|++++|.++.++....++|+.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++
T Consensus       202 ~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        202 TTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             cEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence            33333333333333333344555555555554 2333322  24555555555554 3343332  34555555555555


Q ss_pred             ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830          477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP  556 (801)
Q Consensus       477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  556 (801)
                       .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|++... |..+  .++|+.|++++|.+++ +|..+ 
T Consensus       276 -~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l-  344 (754)
T PRK15370        276 -CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASL-  344 (754)
T ss_pred             -ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhh-
Confidence             3343332  355555555555552 333221  3455556666655432 2221  2455666666665553 22222 


Q ss_pred             CCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEE
Q 044830          557 SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTID  636 (801)
Q Consensus       557 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  636 (801)
                           .++|+.|++++|+++ .+|..+                                             .+.|+.||
T Consensus       345 -----~~sL~~L~Ls~N~L~-~LP~~l---------------------------------------------p~~L~~Ld  373 (754)
T PRK15370        345 -----PPELQVLDVSKNQIT-VLPETL---------------------------------------------PPTITTLD  373 (754)
T ss_pred             -----cCcccEEECCCCCCC-cCChhh---------------------------------------------cCCcCEEE
Confidence                 245666666666665 344221                                             12355666


Q ss_pred             ccCCeeeeeccccccccccCceEeCcCccccccCCcc----ccCCCCCCeEeCcCCcce
Q 044830          637 LSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVE----LTSLTALSVLNLSFNQLV  691 (801)
Q Consensus       637 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~----l~~l~~L~~L~ls~N~l~  691 (801)
                      |++|+++ .+|..+.  .+|+.|++++|++. .+|..    ++.++.+..+++.+|+++
T Consensus       374 Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        374 VSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            6666666 3344333  25666666666665 33433    233456666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.4e-18  Score=196.26  Aligned_cols=97  Identities=23%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccC
Q 044830          267 QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGG  346 (801)
Q Consensus       267 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~  346 (801)
                      +...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|..+.  ++|++|++++|.++. +|..+ ...|+.|++++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l-~~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL-PDTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh-hccccEEECcC
Confidence            4566777777666 3454332  45667777777666 3444332  466666666666552 23221 12455555555


Q ss_pred             CcCCcccchhhcCCCCCCCccEEEccCCCcc
Q 044830          347 NFLDGRIPSWLFNLSTSENLVELDLSNNKLT  377 (801)
Q Consensus       347 n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~  377 (801)
                      |.+. .+|..+.     .+|+.|++++|+++
T Consensus       251 N~L~-~LP~~l~-----s~L~~L~Ls~N~L~  275 (754)
T PRK15370        251 NRIT-ELPERLP-----SALQSLDLFHNKIS  275 (754)
T ss_pred             CccC-cCChhHh-----CCCCEEECcCCccC
Confidence            5554 3444332     23444555444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=4.5e-19  Score=188.69  Aligned_cols=220  Identities=22%  Similarity=0.219  Sum_probs=139.1

Q ss_pred             cccccCCCCCEEECcCCCCcccCCccccCCCC---CCEEeCCCCcccc----cCCccccCC-CCccEEECCCCcCCCC--
Q 044830          433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDS---LSLLDLRKNQFRG----SIPQIFSKC-YDLVALNLNDNELEGK--  502 (801)
Q Consensus       433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~--  502 (801)
                      ..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.  
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            44555667777777777666444444444443   7777777776652    222334445 6777777777777632  


Q ss_pred             --CCccccCCCCCcEEeCCCCcCCCC----cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830          503 --LPPSLANCGDLEVLDVGNNKINDA----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT  576 (801)
Q Consensus       503 --~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  576 (801)
                        ++..+..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.....+...+..+++|++|++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              233456667788888888877642    23334455688888888887765433333333466788999999998887


Q ss_pred             ccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeee----eccccccc
Q 044830          577 GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG----MIPKEVGK  652 (801)
Q Consensus       577 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~~p~~l~~  652 (801)
                      +.....+...+.                                      ...+.|+.|++++|.++.    .+...+..
T Consensus       235 ~~~~~~l~~~~~--------------------------------------~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~  276 (319)
T cd00116         235 DAGAAALASALL--------------------------------------SPNISLLTLSLSCNDITDDGAKDLAEVLAE  276 (319)
T ss_pred             hHHHHHHHHHHh--------------------------------------ccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence            533322221111                                      012467889999998862    24455666


Q ss_pred             cccCceEeCcCcccccc----CCccccCC-CCCCeEeCcCCcc
Q 044830          653 LSSLKLLNFSHNILRGE----IPVELTSL-TALSVLNLSFNQL  690 (801)
Q Consensus       653 l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l  690 (801)
                      +++|+.+++++|.++..    +...+... +.|+++++.+|++
T Consensus       277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            78899999999998854    44455555 7888888888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=4.6e-18  Score=180.96  Aligned_cols=240  Identities=22%  Similarity=0.223  Sum_probs=171.7

Q ss_pred             cccccEEEecCCCCCCC----CccccccCCCCCEEECcCCCCcc------cCCccccCCCCCCEEeCCCCcccccCCccc
Q 044830          414 SSRIRFLSVSDNKLTGE----FPSSICNLSTIEYLNLSNNSLSG------MIPQCLANFDSLSLLDLRKNQFRGSIPQIF  483 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  483 (801)
                      ...|+.++++++.+++.    ++..+...+.+++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            35588888888887542    44556677789999999988762      234566778899999999999886666666


Q ss_pred             cCCCC---ccEEECCCCcCCC----CCCccccCC-CCCcEEeCCCCcCCCC----cchhccCCCCCCEEEccCCcCcccC
Q 044830          484 SKCYD---LVALNLNDNELEG----KLPPSLANC-GDLEVLDVGNNKINDA----FPYWTATLPRLQVLVLRSNSFHGPI  551 (801)
Q Consensus       484 ~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~  551 (801)
                      ..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            55555   9999999999873    233345566 8899999999998743    3445667788999999999887533


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhccc
Q 044830          552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI  631 (801)
Q Consensus       552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  631 (801)
                      ...++..+..+++|+.|++++|.+++.....+...+                                       ..++.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---------------------------------------~~~~~  222 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---------------------------------------ASLKS  222 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh---------------------------------------cccCC
Confidence            222222234567999999999988754332221111                                       12467


Q ss_pred             ceEEEccCCeeeeeccccccc-----cccCceEeCcCcccc----ccCCccccCCCCCCeEeCcCCccee
Q 044830          632 FTTIDLSNNRFEGMIPKEVGK-----LSSLKLLNFSHNILR----GEIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       632 L~~LdLs~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                      |+.||+++|.+++.....+..     .+.|+.|++++|.++    ..++..+..+++|+++++++|+++.
T Consensus       223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            899999999998643333322     379999999999997    2345567777899999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=4e-17  Score=143.75  Aligned_cols=165  Identities=29%  Similarity=0.464  Sum_probs=95.8

Q ss_pred             ccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhh
Q 044830           61 TLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLA  140 (801)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l  140 (801)
                      .+.++.+++.|.||+|+++.  +|..++.+.+|+.|++++|+|. .+|.+++.+++|+.|+++-|               
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn---------------   89 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN---------------   89 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh---------------
Confidence            45566667777777777654  4455677777777777777766 45666666666666666544               


Q ss_pred             cCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCC
Q 044830          141 KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSP  219 (801)
Q Consensus       141 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~  219 (801)
                                                              .+. ..|.+|+.++.|+.||+++|......+|.-+ .++.
T Consensus        90 ----------------------------------------rl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t  128 (264)
T KOG0617|consen   90 ----------------------------------------RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT  128 (264)
T ss_pred             ----------------------------------------hhh-cCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence                                                    111 4567788888888888888744443344333 4444


Q ss_pred             CCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccC
Q 044830          220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH  299 (801)
Q Consensus       220 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  299 (801)
                      |+.|+|+.|.+. .+|..                        ++++++|+.|.+..|.+. .+|..++.+.+|++|.+.+
T Consensus       129 lralyl~dndfe-~lp~d------------------------vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  129 LRALYLGDNDFE-ILPPD------------------------VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             HHHHHhcCCCcc-cCChh------------------------hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            445555555444 34444                        444455555555544444 3455555555555555555


Q ss_pred             eeeeeeCCccCc
Q 044830          300 LNFTGQLPLSAF  311 (801)
Q Consensus       300 n~l~~~~p~~l~  311 (801)
                      |.++ .+|..++
T Consensus       183 nrl~-vlppel~  193 (264)
T KOG0617|consen  183 NRLT-VLPPELA  193 (264)
T ss_pred             ceee-ecChhhh
Confidence            5555 4444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.4e-16  Score=140.44  Aligned_cols=159  Identities=32%  Similarity=0.600  Sum_probs=115.6

Q ss_pred             CCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCC
Q 044830          486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL  565 (801)
Q Consensus       486 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L  565 (801)
                      +...+.|.|++|+++ .+|..++.+.+|+.|++++|++.+ .|..++.+++|+.|+++-|++.     .+|..++.+|.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-----~lprgfgs~p~l  104 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-----ILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-----cCccccCCCchh
Confidence            445555666666665 445556666666666666666633 4555666677777777766665     233445888888


Q ss_pred             cEEEccCCcCCc-cCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeee
Q 044830          566 RIIDISRNGFTG-LLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG  644 (801)
Q Consensus       566 ~~LdLs~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  644 (801)
                      +.|||++|++.. .+|..+|.                                           +..|+.|+|+.|.+. 
T Consensus       105 evldltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-  140 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-  140 (264)
T ss_pred             hhhhccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-
Confidence            888888888863 34443321                                           345677899999997 


Q ss_pred             eccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830          645 MIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       645 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|+++-.-|.
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            78889999999999999999998 7899999999999999999999855444

>PLN03150 hypothetical protein; Provisional

Probab=99.49  E-value=6.5e-14  Score=159.92  Aligned_cols=118  Identities=32%  Similarity=0.571  Sum_probs=101.0

Q ss_pred             CCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeee
Q 044830          564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFE  643 (801)
Q Consensus       564 ~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  643 (801)
                      .++.|+|++|.+.|.+|..+ ..                                          ++.|+.|+|++|.++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i-~~------------------------------------------L~~L~~L~Ls~N~l~  455 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI-SK------------------------------------------LRHLQSINLSGNSIR  455 (623)
T ss_pred             EEEEEECCCCCccccCCHHH-hC------------------------------------------CCCCCEEECCCCccc
Confidence            47889999999999999753 22                                          456899999999999


Q ss_pred             eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCC--CCCcCcCcCCCCCCCCCCCCCC
Q 044830          644 GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQ--FDSFQNDSFIGNLGLCGFALTQ  721 (801)
Q Consensus       644 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~--~~~~~~~~~~gn~~lcg~~l~~  721 (801)
                      |.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|....  +.......+.||+++||.|...
T Consensus       456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~  535 (623)
T PLN03150        456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR  535 (623)
T ss_pred             CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999997532  2233455789999999987555


Q ss_pred             CCC
Q 044830          722 QCS  724 (801)
Q Consensus       722 ~c~  724 (801)
                      .|.
T Consensus       536 ~C~  538 (623)
T PLN03150        536 ACG  538 (623)
T ss_pred             CCc
Confidence            664

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=4.8e-12  Score=144.63  Aligned_cols=103  Identities=32%  Similarity=0.612  Sum_probs=85.5

Q ss_pred             CCCCCCCCCc----ccceeEeCC--CC--CcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCC
Q 044830           19 KSWNKDGDCC----SWDGIICDE--MT--GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQF   90 (801)
Q Consensus        19 ~~w~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l   90 (801)
                      .+|+ +..||    .|.||.|..  .+  .+|+.|+|+++.+.|.+++  .+..+++|+.|+|++|.+.+. +|..++.+
T Consensus       390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l  465 (623)
T PLN03150        390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSI  465 (623)
T ss_pred             CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCC
Confidence            4896 44453    799999953  22  2599999999999998888  888999999999999988876 78778889


Q ss_pred             CCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCC
Q 044830           91 TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD  125 (801)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  125 (801)
                      ++|++|+|++|.+++.+|..++++++|++|+|++|
T Consensus       466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            99999999999998888888888888888888877

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=8.2e-13  Score=137.99  Aligned_cols=172  Identities=29%  Similarity=0.507  Sum_probs=99.8

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      .-...+++.|++. ++|..++.+..|+.+.+..|.+. .+|.++.++..|++++|+.|+++ ..|..++.++ |+.|-++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3345566666665 45555666666666666666665 55556666666666666666665 4454444443 5566666


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|+++ .+|..++....|..||.+.|.+.. +|..+                            +.+.+|+.|.+..|++
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql----------------------------~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQL----------------------------GYLTSLRDLNVRRNHL  201 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHh----------------------------hhHHHHHHHHHhhhhh
Confidence            66655 445555555555555555555532 23333                            4455555555555555


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      . .+|.+.. .|                                           .|..||+|+|+++ .||-+|.+|+.
T Consensus       202 ~-~lp~El~-~L-------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~  235 (722)
T KOG0532|consen  202 E-DLPEELC-SL-------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRH  235 (722)
T ss_pred             h-hCCHHHh-CC-------------------------------------------ceeeeecccCcee-ecchhhhhhhh
Confidence            4 3333321 11                                           2567777777777 67777777777


Q ss_pred             CceEeCcCcccc
Q 044830          656 LKLLNFSHNILR  667 (801)
Q Consensus       656 L~~L~Ls~N~l~  667 (801)
                      |++|-|.+|.+.
T Consensus       236 Lq~l~LenNPLq  247 (722)
T KOG0532|consen  236 LQVLQLENNPLQ  247 (722)
T ss_pred             heeeeeccCCCC
Confidence            777777777766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=1.8e-11  Score=121.17  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             CCCccEEECCCCcCCCC----CCccccCCCCCcEEeCCCCcCCCC----cchhccCCCCCCEEEccCCcCcccCCCCCCC
Q 044830          486 CYDLVALNLNDNELEGK----LPPSLANCGDLEVLDVGNNKINDA----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPS  557 (801)
Q Consensus       486 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  557 (801)
                      -+.|+.+...+|.+...    +...|..++.|+.+.++.|.|...    ....+..+++|+.|+|++|.|+-.....+..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            34566666666665422    223445556666666666655321    2234556666666666666665332222222


Q ss_pred             CCCCCCCCcEEEccCCcCCccCcHHH
Q 044830          558 IKRPFPELRIIDISRNGFTGLLPARY  583 (801)
Q Consensus       558 ~~~~l~~L~~LdLs~N~l~~~~p~~~  583 (801)
                      .+..+++|+.|.+++|.+...-...+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhcccchheeecccccccccccHHHH
Confidence            33556677777777777765544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=1.5e-11  Score=128.65  Aligned_cols=107  Identities=30%  Similarity=0.432  Sum_probs=81.2

Q ss_pred             CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830          216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI  295 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  295 (801)
                      .+.--...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|++++|+.|+++ .+|..+..|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3444456777888877 67887888888888888888876 67777888888888888888887 5666666665 7888


Q ss_pred             eccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830          296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV  327 (801)
Q Consensus       296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  327 (801)
                      -+++|+++ .+|..++....|..||.+.|.+.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence            88888877 67777777777777777777766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=4.7e-11  Score=118.21  Aligned_cols=228  Identities=25%  Similarity=0.266  Sum_probs=112.6

Q ss_pred             ccccCCCCCeeeCCCCCCCCC---cccccccCCCCCCEEeCCCCCCcc----cccc-------CCcCCCCCCEEeCCCCc
Q 044830           61 TLFLLHHLQKLNLACNDFNGT---KISSNFGQFTKLTHLNLSFSYFSG----IVPS-------QISRLSKLVALDLSSDI  126 (801)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~i~~----~~p~-------~l~~l~~L~~L~Ls~n~  126 (801)
                      .+.....++.++||+|.|...   .+.+.+.+.++|+..++|+- ++|    .+|.       .+-.+++|++||||.|.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            456677888888888887533   13455677778888888754 222    2332       23455677777777773


Q ss_pred             CCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCC
Q 044830          127 PRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGL  206 (801)
Q Consensus       127 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~  206 (801)
                      +... ....+-..++.+..|++|.|.+|.+....-..++.-    |.+|.  .+       .-...-+.|+++....|..
T Consensus       104 ~G~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a----l~~l~--~~-------kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen  104 FGPK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA----LFELA--VN-------KKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCcc-chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH----HHHHH--HH-------hccCCCcceEEEEeecccc
Confidence            2221 112234456667777777777766544333332210    11111  00       1112234455555555533


Q ss_pred             CccCCCCCC----CCCCCCEEEccCccCcc----cCcccccCCCCCCEEEcccccCccc----CcccccCCCCCCEEEcC
Q 044830          207 LTGNLPTSN----WSSPLRILDLSITKFSG----KIPDTIGNLRDLKFLDLYVCYFDGQ----VPASLSNLKQLTVLNLE  274 (801)
Q Consensus       207 ~~~~~~~~~----~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~  274 (801)
                      ..+....+.    ..+.|+.+.++.|.|..    .+...+..+++|+.|||.+|.++..    +...+..+++|++|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            322211111    23445555555554431    1223345566666666666655432    22334455556666666


Q ss_pred             CCCCccccCccc-----cCCCCCcEeeccCeeee
Q 044830          275 DNQFSGEFPDVF-----GNLSKLTRISLAHLNFT  303 (801)
Q Consensus       275 ~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~  303 (801)
                      +|.+.......|     ...++|++|.+.+|.++
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            665554333222     12344555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.2e-10  Score=118.56  Aligned_cols=211  Identities=20%  Similarity=0.237  Sum_probs=132.5

Q ss_pred             cCCCCCCEEeCCCCCCccccc-cCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhh-
Q 044830           88 GQFTKLTHLNLSFSYFSGIVP-SQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLL-  165 (801)
Q Consensus        88 ~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~-  165 (801)
                      .++++|+...|.++.+..... .....|++++.||||.|.  +. .-..+......+++|+.|+++.|.+.....+... 
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--FH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh--HH-hHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            456677777777766552211 245567777777777762  11 1122334556777777777777766544332222 


Q ss_pred             ccCCCCccEEEccCCcCccC-CCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCc--ccccCCC
Q 044830          166 NLSSASLISLSLGNCFLRGE-FPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP--DTIGNLR  242 (801)
Q Consensus       166 ~l~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~l~  242 (801)
                      .+  ++|+.|.|+.|.++.. +..-+..+|+|+.|+|.+|...........-+..|++|||++|.+.. .+  ...+.++
T Consensus       195 ~l--~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~  271 (505)
T KOG3207|consen  195 LL--SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLP  271 (505)
T ss_pred             hh--hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccccc
Confidence            23  7888888888887732 11223568888888888884222211222256778889999888763 33  3467788


Q ss_pred             CCCEEEcccccCccc-Cccc-----ccCCCCCCEEEcCCCCCccc-cCccccCCCCCcEeeccCeeeee
Q 044830          243 DLKFLDLYVCYFDGQ-VPAS-----LSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAHLNFTG  304 (801)
Q Consensus       243 ~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~  304 (801)
                      .|+.|+++.+.+... .|+.     ...+++|++|++..|++..- .-..+..+++|+.|.+..|.+..
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            888898888888653 2322     35678899999999988521 11345566778888877777763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=8.4e-10  Score=120.87  Aligned_cols=65  Identities=37%  Similarity=0.549  Sum_probs=47.9

Q ss_pred             ccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830          630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG  697 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  697 (801)
                      ..+..+.+++|++.. ++..++.+++++.|++++|.++.. +. ++.+.+|+.|++++|.++...|..
T Consensus       232 ~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         232 KNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccccccCCceeee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence            345566677777763 366778888888888888888843 33 788888888888888888777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=2.8e-10  Score=106.18  Aligned_cols=106  Identities=31%  Similarity=0.401  Sum_probs=25.9

Q ss_pred             CCCCCEEECcCCCCcccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccc-cCCCCCcE
Q 044830          438 LSTIEYLNLSNNSLSGMIPQCLA-NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEV  515 (801)
Q Consensus       438 l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~  515 (801)
                      ...+++|+|++|.|+.+  +.++ .+.+|+.|++++|.++..  +.+..++.|+.|++++|.|+.. ...+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            33455566666655522  1233 345556666666655532  1344555566666666665532 2222 24555666


Q ss_pred             EeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCc
Q 044830          516 LDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       516 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~  548 (801)
                      |++++|+|.+... ..+..+++|+.|+|.+|+++
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6666665544211 23444555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1.9e-10  Score=111.09  Aligned_cols=128  Identities=26%  Similarity=0.212  Sum_probs=77.6

Q ss_pred             CCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEee
Q 044830          217 SSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRIS  296 (801)
Q Consensus       217 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  296 (801)
                      ...|+++|||+|.|+ .+.++..-.+.++.|++++|.+...  ..+..+++|+.|||++|.++ .+..+-..+-+++.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            345777777777776 5566666667777777777777633  33667777777777777766 3344445566777777


Q ss_pred             ccCeeeeeeCCccCcCCCCCCEEEcccccccccCC--CCCCCCCCCEEEccCCcCC
Q 044830          297 LAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLP--CHASCLPLSHLKLGGNFLD  350 (801)
Q Consensus       297 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~L~~n~l~  350 (801)
                      ++.|.+...  ..+..+-+|..||+++|++...-.  ...+++.|+++.+.+|++.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            777766522  335556666777777776653211  1114444555555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.92  E-value=1.6e-09  Score=118.64  Aligned_cols=178  Identities=32%  Similarity=0.474  Sum_probs=135.6

Q ss_pred             eeeEEEecCCCCCCCCCCc--c-ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC
Q 044830          395 ELRHLDVQSNLLQRLPFIL--S-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR  471 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~--~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  471 (801)
                      .+..+++.+|.+..+++..  . ++|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|......+.|+.|+++
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence            4555555666555555433  3 27889999999888 45566888999999999999998 445444477889999999


Q ss_pred             CCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830          472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI  551 (801)
Q Consensus       472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  551 (801)
                      +|++. .+|........|++|.+++|.+. ..+..+.++.++..+.+.+|++... +..+..+++++.|++++|.++...
T Consensus       195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         195 GNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             CCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccccc
Confidence            99998 56665555667999999999644 4566788888888899999988553 567788888999999999987543


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCCccCcHHH
Q 044830          552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARY  583 (801)
Q Consensus       552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~  583 (801)
                      .      +..+.+++.||+++|.++...|...
T Consensus       272 ~------~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         272 S------LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             c------ccccCccCEEeccCccccccchhhh
Confidence            3      3678899999999999998777553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.8e-10  Score=117.27  Aligned_cols=88  Identities=22%  Similarity=0.134  Sum_probs=40.3

Q ss_pred             CCCCCCEEEccCccCccc-CcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCcccc-CccccCCCCCc
Q 044830          216 WSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF-PDVFGNLSKLT  293 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~  293 (801)
                      .+++|+.|.++.|.++-. +-.....+++|+.|+|..|.....-.....-+..|++|+|++|++...- -...+.++.|+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            345555555655555421 1112334556666666665422222222333455555566555554221 02234455555


Q ss_pred             EeeccCeeee
Q 044830          294 RISLAHLNFT  303 (801)
Q Consensus       294 ~L~L~~n~l~  303 (801)
                      .|+++.+.+.
T Consensus       275 ~Lnls~tgi~  284 (505)
T KOG3207|consen  275 QLNLSSTGIA  284 (505)
T ss_pred             hhhccccCcc
Confidence            5555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.90  E-value=9.1e-10  Score=102.81  Aligned_cols=124  Identities=24%  Similarity=0.346  Sum_probs=47.7

Q ss_pred             cccccEEEecCCCCCCCCccccc-cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccc-cCCCCccE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIF-SKCYDLVA  491 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~  491 (801)
                      +.++++|+|.+|.|+..  +.++ .+.+|+.|++++|.|+.. + .+..++.|++|++++|.++.. .+.+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            44678888888888742  3454 477889999999998854 2 477788999999999999854 3334 45889999


Q ss_pred             EECCCCcCCCCC-CccccCCCCCcEEeCCCCcCCCCcc---hhccCCCCCCEEEc
Q 044830          492 LNLNDNELEGKL-PPSLANCGDLEVLDVGNNKINDAFP---YWTATLPRLQVLVL  542 (801)
Q Consensus       492 L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L  542 (801)
                      |++++|+|...- -..+..+++|+.|++.+|++....-   ..+..+|+|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999886432 2467788999999999999875422   13445666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=4.8e-10  Score=108.30  Aligned_cols=128  Identities=28%  Similarity=0.327  Sum_probs=70.2

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      .|+++|+++|.|+ .+..+..-.|.++.|++|+|.+...  +.+..+++|+.|||++|.++ .+..+-..+-+.+.|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            4555555555555 3344444455566666666665522  22555566666666666555 233333345556666666


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCc-chhccCCCCCCEEEccCCcCcc
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAF-PYWTATLPRLQVLVLRSNSFHG  549 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~  549 (801)
                      +|.+...  ..+..+-+|..||+++|+|.... ...++++|.|+++.|.+|++.+
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            6665421  34445556666666666664322 2345667777777777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2.7e-09  Score=81.74  Aligned_cols=61  Identities=33%  Similarity=0.484  Sum_probs=57.4

Q ss_pred             ccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcc
Q 044830          630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL  690 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  690 (801)
                      +.|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3589999999999988888999999999999999999999899999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.73  E-value=5.9e-09  Score=121.82  Aligned_cols=128  Identities=27%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             CCCCeeeCCCCC--CCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830           66 HHLQKLNLACND--FNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL  143 (801)
Q Consensus        66 ~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l  143 (801)
                      +.|++|-+..|.  +... ...+|..++.|++|||++|.--+.+|..++.|-+||+|++++..  +    ..+|..++++
T Consensus       545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~--I----~~LP~~l~~L  617 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG--I----SHLPSGLGNL  617 (889)
T ss_pred             CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC--c----cccchHHHHH
Confidence            356666666664  2221 22346666777777777665555666667777777777766652  1    3556666666


Q ss_pred             CCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCc--cCCCccCCCCCCCCEEecc
Q 044830          144 TELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR--GEFPIDIFHFPFLRQLTLS  202 (801)
Q Consensus       144 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls  202 (801)
                      ++|.+|++..+.....++.....+  .+|++|.+......  ...-..+.++.+|+.+...
T Consensus       618 k~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             Hhhheeccccccccccccchhhhc--ccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            666666666665544555555556  66666666554311  1112233444555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=2.8e-09  Score=116.81  Aligned_cols=127  Identities=25%  Similarity=0.310  Sum_probs=57.8

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +..++.+.+..|.+.. +-..+..+.+|+.|++.+|.|... ...+..+++|++|++++|.|+...+  +..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence            3444444455555442 112244455555555555555532 1113445555555555555543322  33344455555


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSF  547 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l  547 (801)
                      +++|.|+..  ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            555555422  233334555555555555544333 1 23344444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=1.1e-08  Score=119.63  Aligned_cols=106  Identities=35%  Similarity=0.425  Sum_probs=61.6

Q ss_pred             CCCCEEeccCCC--CCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEE
Q 044830          194 PFLRQLTLSDNG--LLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVL  271 (801)
Q Consensus       194 ~~L~~L~Ls~n~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  271 (801)
                      +.|++|-+..|.  ...+....+..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..+.+++.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            356666666653  12211111235666666666665544566666666666666666666665 566666666666666


Q ss_pred             EcCCCCCccccCccccCCCCCcEeeccCe
Q 044830          272 NLEDNQFSGEFPDVFGNLSKLTRISLAHL  300 (801)
Q Consensus       272 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  300 (801)
                      ++..+.....+|.....+++|++|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            66666544444555555666666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.2e-10  Score=109.54  Aligned_cols=183  Identities=22%  Similarity=0.244  Sum_probs=109.9

Q ss_pred             CCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCC
Q 044830           67 HLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL  146 (801)
Q Consensus        67 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L  146 (801)
                      .|++||||...|+...+...+..|.+|+.|.|.++++.+.+...+++-.+|+.||++.+.   .+......-.+.+++.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s---G~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS---GFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc---ccchhHHHHHHHhhhhH
Confidence            488888888888766666667888888888888888888777788888888888888762   22333444566777777


Q ss_pred             CEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCc--c-CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEE
Q 044830          147 RYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR--G-EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRIL  223 (801)
Q Consensus       147 ~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L  223 (801)
                      ..|+++.|.........+..--+++|+.|+|+++.-.  . .+..-...+++|.+||||+|-                  
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v------------------  324 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV------------------  324 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc------------------
Confidence            7777777765443322222111255666666654311  0 011111244555555555441                  


Q ss_pred             EccCccCcccCcccccCCCCCCEEEcccccCcccCccc---ccCCCCCCEEEcCCCC
Q 044830          224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPAS---LSNLKQLTVLNLEDNQ  277 (801)
Q Consensus       224 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~  277 (801)
                           .++......|.+++.|++|.++.|..  .+|..   +...+.|.+|++.++-
T Consensus       325 -----~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  325 -----MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             -----ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence                 22222333455666677777776653  23432   4556777777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.4e-08  Score=76.43  Aligned_cols=59  Identities=36%  Similarity=0.560  Sum_probs=28.8

Q ss_pred             CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCc
Q 044830          440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE  498 (801)
Q Consensus       440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  498 (801)
                      +|++|++++|+++...+..|.++++|++|++++|+++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555555544444444455555555555555544444444445555555554444

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=7.2e-09  Score=113.60  Aligned_cols=241  Identities=23%  Similarity=0.268  Sum_probs=139.3

Q ss_pred             eeeEEEecCCCCCCCC--CCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC
Q 044830          395 ELRHLDVQSNLLQRLP--FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK  472 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  472 (801)
                      .++.+.+..|.+....  ...+.+++.+++.+|++... ...+..+++|++|++++|.|+...+  +..++.|+.|++.+
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence            4555556666666522  33467777777777777743 2225667777777777777775432  45566677777777


Q ss_pred             CcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830          473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI  551 (801)
Q Consensus       473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  551 (801)
                      |.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+....  .+..+..+..+++..|++...-
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc
Confidence            777632  334557777777777777764433 2 456677777777777775432  2333444444566666665322


Q ss_pred             CCCCCCCCCCCC--CCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhc
Q 044830          552 YNNVPSIKRPFP--ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL  629 (801)
Q Consensus       552 ~~~~~~~~~~l~--~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  629 (801)
                      +.      ..+.  +|+.+++++|++... +.    .+                                       ..+
T Consensus       225 ~l------~~~~~~~L~~l~l~~n~i~~~-~~----~~---------------------------------------~~~  254 (414)
T KOG0531|consen  225 GL------NELVMLHLRELYLSGNRISRS-PE----GL---------------------------------------ENL  254 (414)
T ss_pred             Cc------ccchhHHHHHHhcccCccccc-cc----cc---------------------------------------ccc
Confidence            11      1122  266677777766521 10    00                                       012


Q ss_pred             ccceEEEccCCeeeeeccccccccccCceEeCcCcccccc---CCcc-ccCCCCCCeEeCcCCcceecCC
Q 044830          630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE---IPVE-LTSLTALSVLNLSFNQLVGPIP  695 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~iP  695 (801)
                      ..+..||+++|++...  ..+.....+..+.++.|.+...   .... .+....+..+.+.+|+.....+
T Consensus       255 ~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  255 KNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            3456677777766543  2345556666666666665521   1111 4556667777777777666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=3.2e-08  Score=106.96  Aligned_cols=124  Identities=25%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             eeeEEEecCCCCCCCCCC--ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC
Q 044830          395 ELRHLDVQSNLLQRLPFI--LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK  472 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  472 (801)
                      .|...+++.|.+..+...  .++.++.|+|++|+++..  +.+..++.|++|||++|.+....--...++. |+.|.+++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            444455555554443322  245555555555555532  2444555555555555555422111122222 55555555


Q ss_pred             CcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcC
Q 044830          473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKI  523 (801)
Q Consensus       473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i  523 (801)
                      |.++..  ..+.++.+|+.||+++|-+.+.-. ..++.+..|+.|+|.+|.+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            554421  223445555555555555443211 1123334445555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=5.8e-08  Score=104.99  Aligned_cols=180  Identities=23%  Similarity=0.197  Sum_probs=111.8

Q ss_pred             chhhhccCCCCccEEEccCCcCccCCCccCCCC-CCCCEEeccCCC-----CC---ccCCCCCCCCCCCCEEEccCccCc
Q 044830          161 PSSLLNLSSASLISLSLGNCFLRGEFPIDIFHF-PFLRQLTLSDNG-----LL---TGNLPTSNWSSPLRILDLSITKFS  231 (801)
Q Consensus       161 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~-----~~---~~~~~~~~~~~~L~~L~Ls~n~l~  231 (801)
                      |-.+...  ..|++|.|.+|.+..  ..++..+ ..|++|-..+.-     ++   .+.+.....--.|...+.++|.+.
T Consensus       102 pi~ifpF--~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPF--RSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             Cceeccc--cceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            3344444  778888888877653  1222211 223333222110     00   122222222235677778888876


Q ss_pred             ccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCc
Q 044830          232 GKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF  311 (801)
Q Consensus       232 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  311 (801)
                       .+..++.-++.|+.|+|++|+++..  +.+..++.|++|||+.|.+.....-....+. |+.|.+++|.++..  ..+.
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie  251 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE  251 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence             5666677778888888888888754  3678888888888888888733222333444 88888888887733  3466


Q ss_pred             CCCCCCEEEcccccccccCCCC--CCCCCCCEEEccCCcCC
Q 044830          312 NLTQLSLLELSRNQFVGQLPCH--ASCLPLSHLKLGGNFLD  350 (801)
Q Consensus       312 ~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~L~~n~l~  350 (801)
                      ++.+|+.||+++|-+.+.-.-.  +.+..|+.|.|.+|++-
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7888888888888776533222  25667888888888764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=3.8e-07  Score=88.66  Aligned_cols=205  Identities=18%  Similarity=0.138  Sum_probs=107.3

Q ss_pred             EEEEcCCCCCC--cccCCCccc-ccCCCCCeeeCCCCCCCCC-cccccccCCCCCCEEeCCCCCCccccccCCcCCCCCC
Q 044830           43 IGLDLSSSWLL--GTLHPNSTL-FLLHHLQKLNLACNDFNGT-KISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV  118 (801)
Q Consensus        43 ~~L~L~~~~l~--g~~~~~~~l-~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~  118 (801)
                      .-+.+.++.+.  |...   .+ ...++++.+||.+|.|++= .+...+.++++|++|+|+.|.+...+-..=..+.+|+
T Consensus        48 ellvln~~~id~~gd~~---~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVM---LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             hhheecCCCCCcchhHH---HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            34455565553  2221   23 3578899999999998752 2445577899999999999988744322114567888


Q ss_pred             EEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCC--chhhhccCCCCccEEEccCCcCccC--CCccCCCCC
Q 044830          119 ALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV--PSSLLNLSSASLISLSLGNCFLRGE--FPIDIFHFP  194 (801)
Q Consensus       119 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~~~L~~L~L~~n~l~~~--~~~~l~~l~  194 (801)
                      +|-|.+..  ..+  ......+..+++++.|+++.|+.....  .+..... ++.+++|.+..|...--  .-.--.-++
T Consensus       125 ~lVLNgT~--L~w--~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  125 VLVLNGTG--LSW--TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             EEEEcCCC--CCh--hhhhhhhhcchhhhhhhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            88887762  221  233455677888888888777432211  1111111 13444444444322100  000011245


Q ss_pred             CCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccC-cccccCCCCCCEEEcccccCc
Q 044830          195 FLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKI-PDTIGNLRDLKFLDLYVCYFD  255 (801)
Q Consensus       195 ~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  255 (801)
                      ++..+-+..|++.+..-.... .++.+-.|+|+.++|...- -+.+.+++.|..|.++++.+.
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            566666655544332222222 3444455555555554211 123444555555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=2.8e-07  Score=88.37  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=22.3

Q ss_pred             cccCCCCCeeeCCCCCCCCC---cccccccCCCCCCEEeCCCC
Q 044830           62 LFLLHHLQKLNLACNDFNGT---KISSNFGQFTKLTHLNLSFS  101 (801)
Q Consensus        62 l~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~Ls~n  101 (801)
                      +..+..++.++||+|.|...   .+...+.+-++|+..++|.-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~   68 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA   68 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence            34456666677777766532   12334555566666666643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=4.4e-08  Score=95.05  Aligned_cols=226  Identities=24%  Similarity=0.230  Sum_probs=135.0

Q ss_pred             CCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccC-CCccCCCC-CCCCEEeccCCCCCccCCCCCC-CCCCCC
Q 044830          145 ELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGE-FPIDIFHF-PFLRQLTLSDNGLLTGNLPTSN-WSSPLR  221 (801)
Q Consensus       145 ~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~  221 (801)
                      .-+.+|+.+-++   .|..++.+.......+.+........ +.+.+.-+ ..|++||||...+....+.... .+++|+
T Consensus       137 lW~~lDl~~r~i---~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk  213 (419)
T KOG2120|consen  137 LWQTLDLTGRNI---HPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK  213 (419)
T ss_pred             ceeeeccCCCcc---ChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence            345566655443   45566665446677777765544433 22222222 3488888887633333232233 677888


Q ss_pred             EEEccCccCcccCcccccCCCCCCEEEccccc-Cccc-CcccccCCCCCCEEEcCCCCCccccCccc-c-CCCCCcEeec
Q 044830          222 ILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY-FDGQ-VPASLSNLKQLTVLNLEDNQFSGEFPDVF-G-NLSKLTRISL  297 (801)
Q Consensus       222 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~-~l~~L~~L~L  297 (801)
                      .|.+.++++.+.+...+++-.+|+.|+++.+. ++.. .---+.+++.|..|+++.|.+........ . --++|+.|++
T Consensus       214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl  293 (419)
T KOG2120|consen  214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL  293 (419)
T ss_pred             hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence            88888888887777778888888888888764 2211 11225677888888888887653322111 1 1246777777


Q ss_pred             cCeeee---eeCCccCcCCCCCCEEEccccccccc-CC-CCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEcc
Q 044830          298 AHLNFT---GQLPLSAFNLTQLSLLELSRNQFVGQ-LP-CHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS  372 (801)
Q Consensus       298 ~~n~l~---~~~p~~l~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls  372 (801)
                      +++.-.   ..+..-...+++|.+||+++|..... .. ..+.++.|++|.++.|..  .+|+.+-.+...++|.+|++.
T Consensus       294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence            765311   01111223578888888887753321 11 122677788888887763  567777677777888888877


Q ss_pred             CCC
Q 044830          373 NNK  375 (801)
Q Consensus       373 ~n~  375 (801)
                      ++-
T Consensus       372 g~v  374 (419)
T KOG2120|consen  372 GCV  374 (419)
T ss_pred             ccc
Confidence            663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=5.6e-07  Score=86.38  Aligned_cols=135  Identities=19%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             CCCCEEeccCCCCCccCCCCCC----CCCCCCEEEccCccCccc-----CcccccCCCCCCEEEcccccCccc----Ccc
Q 044830          194 PFLRQLTLSDNGLLTGNLPTSN----WSSPLRILDLSITKFSGK-----IPDTIGNLRDLKFLDLYVCYFDGQ----VPA  260 (801)
Q Consensus       194 ~~L~~L~Ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~p~  260 (801)
                      |.|++.....|+...++...+.    .-..|+++.+..|.|.-.     +...+..+++|+.|||..|.++..    +..
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            4555555555544443322211    123566666666655311     111233456677777777766532    223


Q ss_pred             cccCCCCCCEEEcCCCCCccccCccc------cCCCCCcEeeccCeeeeeeCCcc-----C--cCCCCCCEEEccccccc
Q 044830          261 SLSNLKQLTVLNLEDNQFSGEFPDVF------GNLSKLTRISLAHLNFTGQLPLS-----A--FNLTQLSLLELSRNQFV  327 (801)
Q Consensus       261 ~l~~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~L~~n~l~~~~p~~-----l--~~l~~L~~L~l~~n~~~  327 (801)
                      .+...+.|+.|.+..|-++......+      ...++|+.|-..+|...+.+...     +  ..++-|..|.+.+|++.
T Consensus       237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            34455667777777776654333221      12466677776666544322111     1  24566777777777765


Q ss_pred             c
Q 044830          328 G  328 (801)
Q Consensus       328 ~  328 (801)
                      .
T Consensus       317 E  317 (388)
T COG5238         317 E  317 (388)
T ss_pred             h
Confidence            3

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.93  E-value=1.8e-07  Score=95.33  Aligned_cols=278  Identities=19%  Similarity=0.149  Sum_probs=138.5

Q ss_pred             CCCeeeCCCCC-CCCCcccccccCCCCCCEEeCCCCC-CccccccCC-cCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830           67 HLQKLNLACND-FNGTKISSNFGQFTKLTHLNLSFSY-FSGIVPSQI-SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL  143 (801)
Q Consensus        67 ~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l  143 (801)
                      .|+.|.++++. .....+...-.+++++++|++.++. +++..-..+ ..+++|++|++..|.   .+....+......+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~---~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS---SITDVSLKYLAEGC  215 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---hhHHHHHHHHHHhh
Confidence            45666666653 2222233344456666666666664 222211222 345666666666541   11122233344556


Q ss_pred             CCCCEEeCCCcc-CCCCCch-hhhccCCCCccEEEccCCcCccC--CCccCCCCCCCCEEeccCCCCCccCCCCCC--CC
Q 044830          144 TELRYLLLDNVQ-MFSVVPS-SLLNLSSASLISLSLGNCFLRGE--FPIDIFHFPFLRQLTLSDNGLLTGNLPTSN--WS  217 (801)
Q Consensus       144 ~~L~~L~L~~~~-~~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~--~~  217 (801)
                      ++|++|+++.+. +++.... ...++  ..++.+.+.+|.-.+.  +-..-..+..+..+++.+|...+..--...  .+
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~--~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGC--KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccc--hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            666666666663 2331111 12222  3344554444321100  000012334455555555533332211111  56


Q ss_pred             CCCCEEEccCccCc-ccCccc-ccCCCCCCEEEcccccC-cccCcccc-cCCCCCCEEEcCCCCCccc--cCccccCCCC
Q 044830          218 SPLRILDLSITKFS-GKIPDT-IGNLRDLKFLDLYVCYF-DGQVPASL-SNLKQLTVLNLEDNQFSGE--FPDVFGNLSK  291 (801)
Q Consensus       218 ~~L~~L~Ls~n~l~-~~~~~~-l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~  291 (801)
                      ..|++|+.+++... ...-.. ..+..+|+.|-++.|+- +..--..+ .+.+.|+.+++..+.....  +...-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            67777777765432 221122 23567888888887763 22111222 2567788888877754321  2222245678


Q ss_pred             CcEeeccCeeeeeeC-----CccCcCCCCCCEEEcccccccccCCCCC--CCCCCCEEEccCCcC
Q 044830          292 LTRISLAHLNFTGQL-----PLSAFNLTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFL  349 (801)
Q Consensus       292 L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~L~~n~l  349 (801)
                      |+.+.++++......     ...-..+..|+.+.+++++.+..-....  .+++|+.+++.+++-
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            888888877643221     1122346778888888887654322222  778888888877653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=4.5e-06  Score=81.42  Aligned_cols=209  Identities=19%  Similarity=0.233  Sum_probs=109.8

Q ss_pred             CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCcc
Q 044830          335 SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS  414 (801)
Q Consensus       335 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  414 (801)
                      .++.++++||.+|.++. -.+...-+.++|.|+.|+++.|.+...|-... .+                          .
T Consensus        69 ~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p--------------------------~  120 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP--------------------------L  120 (418)
T ss_pred             Hhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCc-cc--------------------------c
Confidence            45567777777777653 22222233457888888888888765443322 11                          2


Q ss_pred             ccccEEEecCCCCCCC-CccccccCCCCCEEECcCCCCccc--CCccccCC-CCCCEEeCCCCcccc--cCCccccCCCC
Q 044830          415 SRIRFLSVSDNKLTGE-FPSSICNLSTIEYLNLSNNSLSGM--IPQCLANF-DSLSLLDLRKNQFRG--SIPQIFSKCYD  488 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~  488 (801)
                      .+|+.|-|.+..+... ....+..+|.++.|.++.|.....  ..++.... +.++.|.+..|....  ..-..-.-+++
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            3444444444444322 122334455566666666532211  11111111 133344443332210  00000112456


Q ss_pred             ccEEECCCCcCCCC-CCccccCCCCCcEEeCCCCcCCCCc-chhccCCCCCCEEEccCCcCcccCCCCCC--CCCCCCCC
Q 044830          489 LVALNLNDNELEGK-LPPSLANCGDLEVLDVGNNKINDAF-PYWTATLPRLQVLVLRSNSFHGPIYNNVP--SIKRPFPE  564 (801)
Q Consensus       489 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~l~~  564 (801)
                      +..+.+..|.+... .-..+..++.+..|+|+.|+|..+. -..+.++++|..|.+++|++....-..-+  -.+..+++
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~  280 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK  280 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence            77777778876532 2234555667778888888886543 34577888888899988887654433211  12356777


Q ss_pred             CcEEEcc
Q 044830          565 LRIIDIS  571 (801)
Q Consensus       565 L~~LdLs  571 (801)
                      ++.|+=+
T Consensus       281 v~vLNGs  287 (418)
T KOG2982|consen  281 VQVLNGS  287 (418)
T ss_pred             eEEecCc
Confidence            7777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.79  E-value=1.6e-06  Score=74.63  Aligned_cols=64  Identities=28%  Similarity=0.403  Sum_probs=44.0

Q ss_pred             cceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830          631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG  697 (801)
Q Consensus       631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  697 (801)
                      .+++|+|++|+|+ .+|+++..+++|+.||++.|.+. ..|.-+..|.+|.+|+.-+|.+. +||..
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            4567777777776 56666777777777777777777 44555566777777777777654 55544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.73  E-value=1.5e-06  Score=74.84  Aligned_cols=107  Identities=22%  Similarity=0.331  Sum_probs=65.1

Q ss_pred             ccEEEecCCCCCCCCccc---cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          417 IRFLSVSDNKLTGEFPSS---ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +..++|+.|++. .+++.   +.....|+..+|++|.+....+..-..++.++.|++++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            445566666554 22322   233445566677777776444444445556777777777776 5566677777777777


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDA  526 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  526 (801)
                      ++.|.+. ..|..+..+.++-.|+..+|.+..+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence            7777776 4455555566667777777766443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=2.4e-05  Score=54.59  Aligned_cols=36  Identities=36%  Similarity=0.577  Sum_probs=22.0

Q ss_pred             cceEEEccCCeeeeeccccccccccCceEeCcCcccc
Q 044830          631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR  667 (801)
Q Consensus       631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  667 (801)
                      .|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566677777666 34545666666666666666666

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00023  Score=75.17  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCC-cCCCCCCccccCCCCC
Q 044830          435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN-ELEGKLPPSLANCGDL  513 (801)
Q Consensus       435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L  513 (801)
                      +..+..++.|++++|.++ .+|. +  -.+|++|.++++.--..+|..+.  ++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence            344677888888888776 4452 2  13688888877543345565442  46777777777 443 3443      45


Q ss_pred             cEEeCCCCcC
Q 044830          514 EVLDVGNNKI  523 (801)
Q Consensus       514 ~~L~Ls~n~i  523 (801)
                      +.|+++.+..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            6666655543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=5.6e-05  Score=52.77  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=21.8

Q ss_pred             CCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCcc
Q 044830           67 HLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSG  105 (801)
Q Consensus        67 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~  105 (801)
                      +|++|++++|+|+.  +|..++++++|++|++++|.|++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence            56666666666653  44446666666666666666653

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=4.6e-05  Score=87.40  Aligned_cols=87  Identities=21%  Similarity=0.192  Sum_probs=39.8

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCc-cCCCCCCCCCCCCEEEccCccCccc------CcccccCCC
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT-GNLPTSNWSSPLRILDLSITKFSGK------IPDTIGNLR  242 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~l~~l~  242 (801)
                      ++|..||+++++++..  .+++++++|+.|.+.+-.... ..+-..+.+++|+.||+|.......      .-+.-..+|
T Consensus       173 pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp  250 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP  250 (699)
T ss_pred             CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence            3444444444444322  334444444444444432221 1122223455555555554433211      112223477


Q ss_pred             CCCEEEcccccCcccC
Q 044830          243 DLKFLDLYVCYFDGQV  258 (801)
Q Consensus       243 ~L~~L~L~~n~l~~~~  258 (801)
                      +|+.||.+++.+....
T Consensus       251 eLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  251 ELRFLDCSGTDINEEI  266 (699)
T ss_pred             cccEEecCCcchhHHH
Confidence            8888888888776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00024  Score=65.90  Aligned_cols=106  Identities=26%  Similarity=0.280  Sum_probs=49.2

Q ss_pred             CCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccc--cCCCCCCCCCCCEEEcc
Q 044830          268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG--QLPCHASCLPLSHLKLG  345 (801)
Q Consensus       268 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~L~  345 (801)
                      ...+||++|.+...  ..|..+++|.+|.+.+|.|+.+-|.--.-+++|+.|.+.+|.+..  .+.....|+.|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            34445555544321  224445555555555555554333322234455555555555542  22223355566666666


Q ss_pred             CCcCCcccchhhcCCCCCCCccEEEccCCC
Q 044830          346 GNFLDGRIPSWLFNLSTSENLVELDLSNNK  375 (801)
Q Consensus       346 ~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~  375 (801)
                      +|+++..-.-...-+..+++|+.||+..-.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhhh
Confidence            665543221111222236666666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.37  E-value=0.00033  Score=65.08  Aligned_cols=58  Identities=22%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830          417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR  476 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  476 (801)
                      ...+||++|.+...  ..|..++.|.+|.+.+|.|+.+-|.--..+++|+.|.|.+|++.
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            34445555544311  22344455555555555555444433333444555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.22  E-value=0.00092  Score=70.66  Aligned_cols=15  Identities=7%  Similarity=0.089  Sum_probs=9.6

Q ss_pred             CCCccEEEccCCCcc
Q 044830          363 SENLVELDLSNNKLT  377 (801)
Q Consensus       363 ~~~L~~L~Ls~n~l~  377 (801)
                      +.+++.|++++|.++
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            456667777766554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.17  E-value=0.0002  Score=82.22  Aligned_cols=87  Identities=28%  Similarity=0.325  Sum_probs=51.6

Q ss_pred             cCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830           64 LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL  143 (801)
Q Consensus        64 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l  143 (801)
                      .||+|+.|.+++-.+..........++++|+.||+|+++++..  ..+++|++|+.|.+.+    +.+....--..+.+|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn----Le~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN----LEFESYQDLIDLFNL  219 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC----CCCCchhhHHHHhcc
Confidence            4677777777776654443334455677777777777777644  5567777777776653    222222222345566


Q ss_pred             CCCCEEeCCCccC
Q 044830          144 TELRYLLLDNVQM  156 (801)
Q Consensus       144 ~~L~~L~L~~~~~  156 (801)
                      ++|+.||+|....
T Consensus       220 ~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  220 KKLRVLDISRDKN  232 (699)
T ss_pred             cCCCeeecccccc
Confidence            7777777665543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.07  E-value=0.00012  Score=50.96  Aligned_cols=32  Identities=34%  Similarity=0.729  Sum_probs=20.5

Q ss_pred             ccccccccCCC---CCCCCCCCC--CCCcccceeEeC
Q 044830            5 ASSHCDAAVTY---PKTKSWNKD--GDCCSWDGIICD   36 (801)
Q Consensus         5 ~~~~~~~~~~~---~~l~~w~~~--~~~c~w~gv~c~   36 (801)
                      |.+..|++...   +.+.+|+..  .+||+|.||+|+
T Consensus         7 aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    7 ALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            34445666653   479999976  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.01  E-value=4.2e-05  Score=78.50  Aligned_cols=282  Identities=21%  Similarity=0.156  Sum_probs=157.7

Q ss_pred             CcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCC-CCCCcccccccCCCCCCEEeCCCC-CCcccccc-CCcCCCC
Q 044830           40 GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACND-FNGTKISSNFGQFTKLTHLNLSFS-YFSGIVPS-QISRLSK  116 (801)
Q Consensus        40 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~p~-~l~~l~~  116 (801)
                      ++.++++++|..-.|.-+-......++++++|++.++. ++....-..-..++.|++|+|..| .++...-. -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            56788888887655543322245678999999999985 554433343457899999999995 45543333 3356899


Q ss_pred             CCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccC--CCCccEEEccCCc-CccCCCcc-CCC
Q 044830          117 LVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLS--SASLISLSLGNCF-LRGEFPID-IFH  192 (801)
Q Consensus       117 L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~--~~~L~~L~L~~n~-l~~~~~~~-l~~  192 (801)
                      |++|+++.+.   .+....+......+..++.+.+.+|.-.  ..+.+....  ...+.++++..|. ++++.-.. -..
T Consensus       218 L~~lNlSwc~---qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  218 LKYLNLSWCP---QISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HHHhhhccCc---hhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            9999999882   2222344455666777777766665322  222222211  1345566655553 22221001 124


Q ss_pred             CCCCCEEeccCCCCCccCCC-CCC-CCCCCCEEEccCcc-CcccCcccc-cCCCCCCEEEcccccCcc--cCcccccCCC
Q 044830          193 FPFLRQLTLSDNGLLTGNLP-TSN-WSSPLRILDLSITK-FSGKIPDTI-GNLRDLKFLDLYVCYFDG--QVPASLSNLK  266 (801)
Q Consensus       193 l~~L~~L~Ls~n~~~~~~~~-~~~-~~~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~  266 (801)
                      +..|++|+.+++...+...- ... ...+|+.|-++.++ ++..-...+ .+++.|+.+++..+....  .+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            56677777776632211111 111 56677777777764 332211222 245677777777765431  1222223567


Q ss_pred             CCCEEEcCCCCCcccc-----CccccCCCCCcEeeccCeeeee-eCCccCcCCCCCCEEEcccccc
Q 044830          267 QLTVLNLEDNQFSGEF-----PDVFGNLSKLTRISLAHLNFTG-QLPLSAFNLTQLSLLELSRNQF  326 (801)
Q Consensus       267 ~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~  326 (801)
                      .|+++.+++|......     ...-..+..|+.+.++++.... ..-..+..+++|+.+++..++-
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            7777777776543111     1112345667777777776432 2223345667788877776653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.00  E-value=0.0017  Score=58.28  Aligned_cols=100  Identities=18%  Similarity=0.378  Sum_probs=33.9

Q ss_pred             ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEEC
Q 044830          415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL  494 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  494 (801)
                      ++|+.+.+.. .+...-...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            3444444442 233222334444444555555443 3333333444444455555543 222223334444445555544


Q ss_pred             CCCcCCCCCCccccCCCCCcEEeCC
Q 044830          495 NDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       495 ~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      ..+ +.......|.++ .|+.+.+.
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-T
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEEC
Confidence            433 222222334443 44444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.79  E-value=0.0026  Score=57.07  Aligned_cols=106  Identities=19%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830          433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD  512 (801)
Q Consensus       433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  512 (801)
                      ..|.++++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455666677777664 455455556666666777777664 5544455666666677777654 333233445556666


Q ss_pred             CcEEeCCCCcCCCCcchhccCCCCCCEEEcc
Q 044830          513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLR  543 (801)
Q Consensus       513 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  543 (801)
                      |+.+++..+ +.......+.++ .|+.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            666666554 444444444444 55555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.00053  Score=66.63  Aligned_cols=61  Identities=31%  Similarity=0.405  Sum_probs=28.5

Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCccEEECCCC--cCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830          462 FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN--ELEGKLPPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       462 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      +..|+.|.+.+..++..  ..|..+++|+.|.++.|  .+.+.++.....+++|++|++++|++.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33444444444444311  22344455555555555  333334434444455555555555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.0016  Score=63.33  Aligned_cols=89  Identities=22%  Similarity=0.341  Sum_probs=55.2

Q ss_pred             cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC--cccccCCccccCCCCccEEECCCCcCCCC-CCccccCCC
Q 044830          435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN--QFRGSIPQIFSKCYDLVALNLNDNELEGK-LPPSLANCG  511 (801)
Q Consensus       435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~  511 (801)
                      ...+..|+.|.+.+..++..  ..|..+++|+.|.++.|  ++.+.++.....+++|++|++++|++.-. .-..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            33455566666666666532  23556677888888888  55555555455568888888888887520 112244556


Q ss_pred             CCcEEeCCCCcCCC
Q 044830          512 DLEVLDVGNNKIND  525 (801)
Q Consensus       512 ~L~~L~Ls~n~i~~  525 (801)
                      +|..|++.+|..+.
T Consensus       117 nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN  130 (260)
T ss_pred             chhhhhcccCCccc
Confidence            67777777776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.00034  Score=68.04  Aligned_cols=84  Identities=26%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccEEE
Q 044830          415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALN  493 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  493 (801)
                      .+++.|++.++.+.++  .....++.|++|.|+-|+|+..-|  +..|++|++|+|..|.|....- ..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3556677777766643  223457777777777777764433  5667777777777776652210 1244566666666


Q ss_pred             CCCCcCCCC
Q 044830          494 LNDNELEGK  502 (801)
Q Consensus       494 L~~n~l~~~  502 (801)
                      |..|.-.|.
T Consensus        95 L~ENPCc~~  103 (388)
T KOG2123|consen   95 LDENPCCGE  103 (388)
T ss_pred             hccCCcccc
Confidence            666655444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.0003  Score=68.39  Aligned_cols=86  Identities=23%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             CCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCC-CccccCCCCCcEE
Q 044830          438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL-PPSLANCGDLEVL  516 (801)
Q Consensus       438 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L  516 (801)
                      +.+.+.|++.+|.++++  .....++.|++|.|+-|+|+..-|  |..|+.|++|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556667777766643  223456667777777776663322  455666666666666654211 0234455555555


Q ss_pred             eCCCCcCCCCc
Q 044830          517 DVGNNKINDAF  527 (801)
Q Consensus       517 ~Ls~n~i~~~~  527 (801)
                      .|..|...+..
T Consensus        94 WL~ENPCc~~a  104 (388)
T KOG2123|consen   94 WLDENPCCGEA  104 (388)
T ss_pred             hhccCCccccc
Confidence            55555544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.65  E-value=0.00086  Score=75.72  Aligned_cols=13  Identities=38%  Similarity=0.455  Sum_probs=6.2

Q ss_pred             cCCCCCCEEeCCC
Q 044830          112 SRLSKLVALDLSS  124 (801)
Q Consensus       112 ~~l~~L~~L~Ls~  124 (801)
                      ..+++|+.|+++.
T Consensus       211 ~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  211 LKCPNLEELDLSG  223 (482)
T ss_pred             hhCchhheecccC
Confidence            3445555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.58  E-value=0.0088  Score=34.60  Aligned_cols=20  Identities=30%  Similarity=0.532  Sum_probs=12.1

Q ss_pred             ceEEEccCCeeeeeccccccc
Q 044830          632 FTTIDLSNNRFEGMIPKEVGK  652 (801)
Q Consensus       632 L~~LdLs~N~l~~~~p~~l~~  652 (801)
                      |++|||++|+|+ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            566666666666 55555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.48  E-value=0.0058  Score=35.37  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=12.7

Q ss_pred             cCceEeCcCccccccCCccccC
Q 044830          655 SLKLLNFSHNILRGEIPVELTS  676 (801)
Q Consensus       655 ~L~~L~Ls~N~l~~~ip~~l~~  676 (801)
                      +|++|||++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 56655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.67  E-value=0.007  Score=68.32  Aligned_cols=238  Identities=21%  Similarity=0.145  Sum_probs=122.4

Q ss_pred             cCCCCCeeeCCCC-CCCCCcccccccCCCCCCEEeCCCC-CCcccc----ccCCcCCCCCCEEeCCCCcCCCccccCchh
Q 044830           64 LLHHLQKLNLACN-DFNGTKISSNFGQFTKLTHLNLSFS-YFSGIV----PSQISRLSKLVALDLSSDIPRTKFEQHTFN  137 (801)
Q Consensus        64 ~l~~L~~L~Ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~----p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~  137 (801)
                      .++.|+.|.+.++ .+....+......+++|+.|+++++ ......    ......+++|+.|+++.+.  . +.+..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~-isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG--L-VTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh--c-cCchhHH
Confidence            4788999999887 4444323345678899999999973 221111    1234557888899988772  1 2233444


Q ss_pred             HhhcCCCCCCEEeCCCcc-CCCCCchhhhc-cCCCCccEEEccCCcCccC--CCccCCCCCCCCEEeccCCCCCccCCCC
Q 044830          138 NLAKNLTELRYLLLDNVQ-MFSVVPSSLLN-LSSASLISLSLGNCFLRGE--FPIDIFHFPFLRQLTLSDNGLLTGNLPT  213 (801)
Q Consensus       138 ~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~  213 (801)
                      .....+++|+.|.+.++. ++...-..+.. +  +.|++|+++.|.....  +.....++++|+.|.+.....       
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~--~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------  333 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERC--PSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------  333 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhc--CcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence            444457788888877666 44444333333 4  6678888777654311  111223455555554433311       


Q ss_pred             CCCCCCCCEEEccCccCc---ccCcccccCCCCCCEEEcccccCcccC-cccccCCCCCCEEEcCCCCCccccCccccCC
Q 044830          214 SNWSSPLRILDLSITKFS---GKIPDTIGNLRDLKFLDLYVCYFDGQV-PASLSNLKQLTVLNLEDNQFSGEFPDVFGNL  289 (801)
Q Consensus       214 ~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  289 (801)
                         +..++.+.+....-.   .........+++++.+.+..+...... ...+..++.|+ ..+...         ....
T Consensus       334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~  400 (482)
T KOG1947|consen  334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRS  400 (482)
T ss_pred             ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccC
Confidence               233444444332221   122233556777777777777633222 13344455552 111111         1111


Q ss_pred             CCCcEeeccCeeeeeeCC-ccCcC-CCCCCEEEcccccc
Q 044830          290 SKLTRISLAHLNFTGQLP-LSAFN-LTQLSLLELSRNQF  326 (801)
Q Consensus       290 ~~L~~L~L~~n~l~~~~p-~~l~~-l~~L~~L~l~~n~~  326 (801)
                      ..++.|+++.+.....-- ..... ...++.+++.++..
T Consensus       401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             CccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            226777777665331110 01111 45566666666544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.61  E-value=0.00046  Score=75.85  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             ceEEEccCCeeeee----ccccccccccCceEeCcCcccc
Q 044830          632 FTTIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILR  667 (801)
Q Consensus       632 L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  667 (801)
                      ++.+|++.|.|+..    ..+.+.....++.|.++.|.+.
T Consensus       264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44555555555432    2233444445555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.68  E-value=0.0007  Score=74.43  Aligned_cols=138  Identities=25%  Similarity=0.272  Sum_probs=69.6

Q ss_pred             CCEEECcCCCCccc----CCccccCCCCCCEEeCCCCcccc----cCCcc----ccCCCCccEEECCCCcCCCC----CC
Q 044830          441 IEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRG----SIPQI----FSKCYDLVALNLNDNELEGK----LP  504 (801)
Q Consensus       441 L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~----~~  504 (801)
                      +++|++..|.+++.    +.+.+.....++.++++.|.+..    .++..    +....++++|++++|.++..    +.
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            44445555544422    23334444455555555554421    11111    22345566666666665421    11


Q ss_pred             ccccCCCC-CcEEeCCCCcCCCCc----chhccCC-CCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCcc
Q 044830          505 PSLANCGD-LEVLDVGNNKINDAF----PYWTATL-PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL  578 (801)
Q Consensus       505 ~~l~~l~~-L~~L~Ls~n~i~~~~----~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  578 (801)
                      ..+...+. +.+|++..|++.+..    ...+..+ +.++.++++.|.+.......+......++.+++++++.|.+...
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            22333334 555677777665431    1223333 55677777777776555444444445566777777777776643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.71  E-value=0.01  Score=56.55  Aligned_cols=80  Identities=19%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             CcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCE
Q 044830           40 GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVA  119 (801)
Q Consensus        40 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~  119 (801)
                      .+|+.||++.+.+...- .  .++.++.+..||++.|.+.-  +|..++....++.+++..|..+ ..|.++..++++++
T Consensus        42 kr~tvld~~s~r~vn~~-~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLG-K--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhhc-c--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            46788888877764321 1  46667777777887776643  5667777777777777777766 56777777777777


Q ss_pred             EeCCCC
Q 044830          120 LDLSSD  125 (801)
Q Consensus       120 L~Ls~n  125 (801)
                      +++-.+
T Consensus       116 ~e~k~~  121 (326)
T KOG0473|consen  116 NEQKKT  121 (326)
T ss_pred             hhhccC
Confidence            777766

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.37  E-value=0.028  Score=52.67  Aligned_cols=114  Identities=20%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             cccccccCCCCCCCCCCCCCCCccc--ceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcc
Q 044830            6 SSHCDAAVTYPKTKSWNKDGDCCSW--DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKI   83 (801)
Q Consensus         6 ~~~~~~~~~~~~l~~w~~~~~~c~w--~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~   83 (801)
                      -+||-.++++..-..|...+.-|..  .+-.  ...-.|..+|-++..|..+-..  .+..++.++.|.+.+|.--+.--
T Consensus        67 Il~~GgaVkf~~d~~~~~~d~~g~~~lp~~~--~~~~~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~  142 (221)
T KOG3864|consen   67 ILHCGGAVKFVSDREWLQKDYNGYFSLPGPN--ADNVKIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWC  142 (221)
T ss_pred             HHhcCcceeecCChHhhcCcccceecCCCCC--CCcceEEEEecCCchHHHHHHH--HHhccchhhhheeccccchhhHH
Confidence            4567777777656666544433332  1111  1123588899998888655333  66777777777777775322101


Q ss_pred             ccccc-CCCCCCEEeCCCCC-CccccccCCcCCCCCCEEeCC
Q 044830           84 SSNFG-QFTKLTHLNLSFSY-FSGIVPSQISRLSKLVALDLS  123 (801)
Q Consensus        84 ~~~~~-~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~Ls  123 (801)
                      -+.++ -.++|+.|+|++|. |++.--..+.++++|+.|.+.
T Consensus       143 L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  143 LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            11122 34577777777663 554333345556666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.84  E-value=0.22  Score=26.62  Aligned_cols=10  Identities=40%  Similarity=0.614  Sum_probs=3.0

Q ss_pred             CceEeCcCcc
Q 044830          656 LKLLNFSHNI  665 (801)
Q Consensus       656 L~~L~Ls~N~  665 (801)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.34  E-value=0.81  Score=27.51  Aligned_cols=18  Identities=33%  Similarity=0.497  Sum_probs=10.8

Q ss_pred             CCCCEEeCCCCCCccccc
Q 044830           91 TKLTHLNLSFSYFSGIVP  108 (801)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~p  108 (801)
                      ++|++|+|++|.++...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666664433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.34  E-value=0.81  Score=27.51  Aligned_cols=18  Identities=33%  Similarity=0.497  Sum_probs=10.8

Q ss_pred             CCCCEEeCCCCCCccccc
Q 044830           91 TKLTHLNLSFSYFSGIVP  108 (801)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~p  108 (801)
                      ++|++|+|++|.++...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666664433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.04  E-value=0.69  Score=27.81  Aligned_cols=13  Identities=38%  Similarity=0.567  Sum_probs=6.1

Q ss_pred             cCceEeCcCcccc
Q 044830          655 SLKLLNFSHNILR  667 (801)
Q Consensus       655 ~L~~L~Ls~N~l~  667 (801)
                      +|+.|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.04  E-value=0.69  Score=27.81  Aligned_cols=13  Identities=38%  Similarity=0.567  Sum_probs=6.1

Q ss_pred             cCceEeCcCcccc
Q 044830          655 SLKLLNFSHNILR  667 (801)
Q Consensus       655 ~L~~L~Ls~N~l~  667 (801)
                      +|+.|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.61  E-value=0.033  Score=53.22  Aligned_cols=88  Identities=20%  Similarity=0.216  Sum_probs=59.8

Q ss_pred             cccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCC
Q 044830          237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL  316 (801)
Q Consensus       237 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  316 (801)
                      .+......+.||++.|++. .+...|+-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3445566677777777654 23344566667777777777766 56777777777777777777766 567777777777


Q ss_pred             CEEEccccccc
Q 044830          317 SLLELSRNQFV  327 (801)
Q Consensus       317 ~~L~l~~n~~~  327 (801)
                      +++++..+.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            77777776654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.57  E-value=0.39  Score=28.29  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=7.3

Q ss_pred             cceEEEccCCeeeee
Q 044830          631 IFTTIDLSNNRFEGM  645 (801)
Q Consensus       631 ~L~~LdLs~N~l~~~  645 (801)
                      .|++|||++|+|++.
T Consensus         3 ~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    3 NLETLDLSNNQITDE   17 (24)
T ss_dssp             T-SEEE-TSSBEHHH
T ss_pred             CCCEEEccCCcCCHH
Confidence            455666666665544

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	801
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-49
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-49
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-15
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-07
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 222/762 (29%), Positives = 331/762 (43%), Gaps = 108/762 (14%)
Query: 21  WNKDGDCCSWDGIICDEMTGHVIGLDLSSSWL-LGTLHPNSTXXXXXXXXXXXXACNDFN 79
           W+ + + C++DG+ C +    V  +DLSS  L +G    +S+            + +  N
Sbjct: 33  WSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90
Query: 80  GTKISSNFGQFTKLTHLNLSFSYFSGIVP--SQISRLSKLVALDLSSDIPRTKFEQHTFN 137
           G+   S F     LT L+LS +  SG V   + +   S L  L++SS+     F      
Sbjct: 91  GSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT--LDFPGKVSG 146
Query: 138 NLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLR 197
            L  N  E+  L  +++   +VV                 GN  + G+  +D+     L 
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGD--VDVSRCVNLE 203
Query: 198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
            L +S N   TG +P     S L+ LD+S  K SG     I    +LK L++    F G 
Sbjct: 204 FLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVF-GNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
           +P     LK L  L+L +N+F+GE PD   G    LT + L+  +F G +P    + + L
Sbjct: 263 IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 317 SLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
             L LS N F G+LP         L  L L  N   G +P  L NLS S  L+ LDLS+N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTLDLSSN 378
Query: 375 KLTGQIF-QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
             +G I   L Q P                N LQ            L + +N  TG+ P 
Sbjct: 379 NFSGPILPNLCQNP---------------KNTLQE-----------LYLQNNGFTGKIPP 412
Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
           ++ N S +  L+LS N LSG IP  L +   L  L L  N   G IPQ       L  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
           L+ N+L G++P  L+NC +L  + + NN++    P W   L  L +L L +NSF G    
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---- 528
Query: 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQ---------------------SLKAMMH 592
           N+P+       L  +D++ N F G +PA  F+                      +K   H
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 593 GDNDDIDLDYMNS-------------------AGY--------------DQYYSMILTYK 619
           G  + ++   + S                    G+              D  Y+M+  Y 
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY- 647
Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
            +  E+  +  +F  ++L +N   G IP EVG L  L +L+ S N L G IP  +++LT 
Sbjct: 648 -IPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQ 721
           L+ ++LS N L GPIP+  QF++F    F+ N GLCG+ L +
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 222/762 (29%), Positives = 331/762 (43%), Gaps = 108/762 (14%)
Query: 21  WNKDGDCCSWDGIICDEMTGHVIGLDLSSSWL-LGTLHPNSTXXXXXXXXXXXXACNDFN 79
           W+ + + C++DG+ C +    V  +DLSS  L +G    +S+            + +  N
Sbjct: 30  WSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 87
Query: 80  GTKISSNFGQFTKLTHLNLSFSYFSGIVP--SQISRLSKLVALDLSSDIPRTKFEQHTFN 137
           G+   S F     LT L+LS +  SG V   + +   S L  L++SS+     F      
Sbjct: 88  GSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT--LDFPGKVSG 143
Query: 138 NLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLR 197
            L  N  E+  L  +++   +VV                 GN  + G+  +D+     L 
Sbjct: 144 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGD--VDVSRCVNLE 200
Query: 198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
            L +S N   TG +P     S L+ LD+S  K SG     I    +LK L++    F G 
Sbjct: 201 FLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVF-GNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
           +P     LK L  L+L +N+F+GE PD   G    LT + L+  +F G +P    + + L
Sbjct: 260 IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 317 SLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
             L LS N F G+LP         L  L L  N   G +P  L NLS S  L+ LDLS+N
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTLDLSSN 375
Query: 375 KLTGQIF-QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
             +G I   L Q P                N LQ            L + +N  TG+ P 
Sbjct: 376 NFSGPILPNLCQNP---------------KNTLQE-----------LYLQNNGFTGKIPP 409
Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
           ++ N S +  L+LS N LSG IP  L +   L  L L  N   G IPQ       L  L 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
           L+ N+L G++P  L+NC +L  + + NN++    P W   L  L +L L +NSF G    
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---- 525
Query: 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQ---------------------SLKAMMH 592
           N+P+       L  +D++ N F G +PA  F+                      +K   H
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 593 GDNDDIDLDYMNS-------------------AGY--------------DQYYSMILTYK 619
           G  + ++   + S                    G+              D  Y+M+  Y 
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY- 644
Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
            +  E+  +  +F  ++L +N   G IP EVG L  L +L+ S N L G IP  +++LT 
Sbjct: 645 -IPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQ 721
           L+ ++LS N L GPIP+  QF++F    F+ N GLCG+ L +
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 122/294 (41%), Gaps = 57/294 (19%)
Query: 431 FPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL 489
            PSS+ NL  + +L +   N+L G IP  +A    L  L +      G+IP   S+   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL-QVLVLRSNSFH 548
           V L+ + N L G LPPS+++  +L  +    N+I+ A P    +  +L   + +  N   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 549 G---PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNS 605
           G   P + N+         L  +D+SRN                M+ GD           
Sbjct: 188 GKIPPTFANL--------NLAFVDLSRN----------------MLEGD----------- 212
Query: 606 AGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNI 665
                  S++    G D   ++       I L+ N     + K VG   +L  L+  +N 
Sbjct: 213 ------ASVLF---GSDKNTQK-------IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255
Query: 666 LRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFAL 719
           + G +P  LT L  L  LN+SFN L G IPQG     F   ++  N  LCG  L
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 144/382 (37%), Gaps = 52/382 (13%)
Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV--PASLSNLKQLTVLNLEDNQ 277
           LRILDL  +K     PD    L  L  L LY C     V       NLK LT L+L  NQ
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 278 FSGEFPD-VFGNLSKLTRISLA--HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH- 333
               +    FG L+ L  I  +   +    +  L       LS   L+ N    ++    
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194
Query: 334 ASCL-PLSHLKL--------------GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378
             C+ P  ++ L               GNF +    S  F+L  + +++      + +  
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRI-------RFLSVSDNKLTGEF 431
                DQ     ++   +RHLD+    +    F L+SR+       + L+++ NK+    
Sbjct: 255 P----DQNTFAGLARSSVRHLDLSHGFV----FSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
             +   L  ++ LNLS N L  +          ++ +DL+KN       Q F     L  
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 492 LNLNDNELEG-----KLPPSLANCGDL----------EVLDVGNNKI-NDAFPYWTATLP 535
           L+L DN L        +P    +   L           ++ +  N++ N    Y+   +P
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 536 RLQVLVLRSNSFHGPIYNNVPS 557
            LQ+L+L  N F     +  PS
Sbjct: 427 HLQILILNQNRFSSCSGDQTPS 448

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 128/538 (23%), Positives = 218/538 (40%), Gaps = 109/538 (20%)
Query: 194 PFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
           P  + L+LS N +    +P  ++ S LR+L LS  +            +DL++LD+    
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 254 FDGQVPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN 312
                   +++L+ L   +L  N F        FGNL+KLT        F G   LSA  
Sbjct: 112 LQNISCCPMASLRHL---DLSFNDFDVLPVCKEFGNLTKLT--------FLG---LSAAK 157
Query: 313 LTQLSLLELSRNQFVGQLPCHASCLPLS----HLKLGGNFLDGRIPSWLFNLSTSENLVE 368
             QL LL ++          H SC+ L     H+K GG     +IP        +  ++ 
Sbjct: 158 FRQLDLLPVAH--------LHLSCILLDLVSYHIK-GGETESLQIP--------NTTVLH 200
Query: 369 LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIR---FLSVSDN 425
           L    N L      +    V  +  ++L ++ +     QRL   LS   R    L+V+  
Sbjct: 201 LVFHPNSLFSVQVNMS---VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257
Query: 426 KLTGEFPSSICNLS-----TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR----KNQF- 475
            +   +  S+          +EYLN+ N +++  I +    +   +L  L     KNQ  
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317
Query: 476 ---RGSIPQIFSKCYDLVALNLNDNE-LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT 531
              + ++  +F++  ++  L+++D   +    PPS ++      L+   N   D+     
Sbjct: 318 LFSKEALYSVFAE-MNIKMLSISDTPFIHMVCPPSPSS---FTFLNFTQNVFTDSVFQGC 373
Query: 532 ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM 591
           +TL RLQ L+L+ N                          +N F   L  +   SL+ + 
Sbjct: 374 STLKRLQTLILQRNGL------------------------KNFFKVALMTKNMSSLETL- 408
Query: 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG 651
                D+ L+ +NS  YD+  +          E   VLN+ + + L+ + F  + PK   
Sbjct: 409 -----DVSLNSLNSHAYDRTCAWA--------ESILVLNLSSNM-LTGSVFRCLPPK--- 451
Query: 652 KLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFI 709
               +K+L+  HN     IP ++T L AL  LN++ NQL   +P G  FD   +  +I
Sbjct: 452 ----VKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGV-FDRLTSLQYI 502

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
           N  S L +L ++   F    +PD    LR+L FLDL  C  +   P + ++L  L VLN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 274 EDNQFSGEFPDVFGNLSKLTRI 295
             NQ       +F  L+ L +I
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKI 523

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
           N  S L +L ++   F    +PD    LR+L FLDL  C  +   P + ++L  L VLN+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 274 EDNQFSG--EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
             N F     FP    N  ++   SL H+  + +  L  F  + L+ L L++N F 
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 261

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
           N  S L +L ++   F    +PD    LR+L FLDL  C  +   P + ++L  L VLN+
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 274 EDNQFSG--EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
             N F     FP    N  ++   SL H+  + +  L  F  + L+ L L++N F 
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 580

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
           N  S L +L ++   F    +PD    LR+L FLDL  C  +   P + ++L  L VLN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 274 EDNQFSG--EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
             N F     FP    N  ++   SL H+  + +  L  F  + L+ L L++N F 
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 556

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 13/192 (6%)
Query: 368 ELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLS---VSD 424
           +LDL +NKL+     L      R++ + L +L+   N LQ LP  +   ++ L    V+D
Sbjct: 41  KLDLQSNKLSS----LPSKAFHRLTKLRLLYLN--DNKLQTLPAGIFKELKNLETLWVTD 94
Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS 484
           NKL          L  +  L L  N L  + P+   +   L+ L L  N+ +     +F 
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 485 KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRS 544
           K   L  L L +N+L+     +     +L+ L + NN++         +L +L++L L+ 
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 545 N----SFHGPIY 552
           N    + +G IY
Sbjct: 215 NPWDCTCNGIIY 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	801
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  539 bits (1392), Expect = 0.0
 Identities = 201/772 (26%), Positives = 312/772 (40%), Gaps = 102/772 (13%)

Query: 20  SWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHP-NSTLFLLHHLQKLNLACNDF 78
            W+ + + C++DG+ C      V  +DLSS  L       +S+L  L  L+ L L+ +  
Sbjct: 32  DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89

Query: 79  NGTKISSNFGQFTKLTHLNLSFSYFSGIVPS--QISRLSKLVALDLSSDIPRTKFEQHTF 136
           NG+   S F     LT L+LS +  SG V +   +   S L  L++SS       +    
Sbjct: 90  NGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS----NTLDFPGK 143

Query: 137 NNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS-ASLISLSLGNCFLRGEFPIDIFHFPF 195
            +    L  L  L L    +        +       L  L++    + G+  +       
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVN 201

Query: 196 LRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFD 255
           L  L +S N   +  +P     S L+ LD+S  K SG     I    +LK L++    F 
Sbjct: 202 LEFLDVSSNNF-STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPD-VFGNLSKLTRISLAHLNFTGQLPLSAFNLT 314
           G +P     LK L  L+L +N+F+GE PD + G    LT + L+  +F G +P    + +
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 315 QLSLLELSRNQFVGQLPCH--ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
            L  L LS N F G+LP         L  L L  N   G +P  L NLS   +L+ LDLS
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLS 376

Query: 373 NNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432
           +N  +G I                            L     + ++ L + +N  TG+ P
Sbjct: 377 SNNFSGPILP-------------------------NLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL 492
            ++ N S +  L+LS N LSG IP  L +   L  L L  N   G IPQ       L  L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIY 552
            L+ N+L G++P  L+NC +L  + + NN++    P W   L  L +L L +NSF G I 
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI- 530

Query: 553 NNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY 612
              P+       L  +D++ N F G +PA  F+    +           Y+ + G  +  
Sbjct: 531 ---PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 613 SM---ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE 669
                +L ++G+  E    L+     ++++  + G          S+  L+ S+N+L G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

Query: 670 IPVELTSLTALSVLNLSFNQLVGPIPQ--------------------------------- 696
           IP E+ S+  L +LNL  N + G IP                                  
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707

Query: 697 ---------------GKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPM 733
                            QF++F    F+ N GLCG+ L +   +     A  
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  286 bits (733), Expect = 6e-86
 Identities = 127/644 (19%), Positives = 229/644 (35%), Gaps = 62/644 (9%)

Query: 68  LQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DI 126
            +  + +      T++  +    T +T LNL+ +    +  +  +R S+L +LD+    I
Sbjct: 6   HEVADCSHLKL--TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 127 PRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEF 186
             +K E      L      L+ L L + ++  +   +    ++  L  L L +  ++   
Sbjct: 62  --SKLEPELCQKL----PMLKVLNLQHNELSQLSDKTFAFCTN--LTELHLMSNSIQKIK 113

Query: 187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIG--NLRDL 244
                    L  L LS NGL +  L T      L+ L LS  K      + +       L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFG---NLSKLTRISLAHLN 301
           K L+L         P     + +L  L L + Q      +        + +  +SL++  
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 302 FTGQLP--LSAFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLF 358
            +            T L++L+LS N          + LP L +  L  N +       L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 359 NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIR 418
            L    N+  L+L  +     I          +  ++         L             
Sbjct: 294 GLF---NVRYLNLKRSFTKQSISLA------SLPKIDDFSFQWLKCL------------E 332

Query: 419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSL-----LDLRKN 473
            L++ DN + G   +    L  ++YL+LSN+  S         F SL+      L+L KN
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL-RTLTNETFVSLAHSPLHILNLTKN 391

Query: 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTA 532
           +        FS    L  L+L  NE+  +L         ++  + +  NK         A
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 533 TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH 592
            +P LQ L+LR  +      ++ PS  +P   L I+D+S N    +      + L+ +  
Sbjct: 452 LVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEI 508

Query: 593 GDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK 652
                +DL + N A             G  +   + L+    ++L +N F+ +  +    
Sbjct: 509 -----LDLQHNNLA-----RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696
           L  LK+++   N L         +  +L  LNL  N +     +
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  259 bits (665), Expect = 3e-76
 Identities = 132/690 (19%), Positives = 224/690 (32%), Gaps = 114/690 (16%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           LD+  + +            L  L+ LNL  N+ +       F   T LT L+L  +   
Sbjct: 54  LDVGFNTISKL--EPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQ 110

Query: 105 GIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV 160
            I  +   +   L+ LDLS    S                  L  L+ LLL N ++ ++ 
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV---------QLENLQELLLSNNKIQALK 161

Query: 161 PSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGL---LTGNLPTSNWS 217
              L   +++SL  L L +  ++   P        L  L L++  L   LT  L     +
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 218 SPLRILDLSITKFSGKIPDTIGNLRD--LKFLDLYVCYFDGQVPASLSNLKQLTVLNLED 275
           + +R L LS ++ S     T   L+   L  LDL     +     S + L QL    LE 
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 276 NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS 335
           N     F      L  +  ++L              + T+ S   +S             
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKR------------SFTKQS---ISLASLPKIDDFSFQ 326

Query: 336 CLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394
            L  L HL +  N + G   +    L    NL  L LSN+  + +               
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLI---NLKYLSLSNSFTSLR--------------- 368

Query: 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
                 + +     L     S +  L+++ NK++     +   L  +E L+L  N +   
Sbjct: 369 -----TLTNETFVSLA---HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 455 IP-QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG--KLPPSLANCG 511
           +  Q     +++  + L  N++       F+    L  L L    L+     P       
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH----GPIYNNVPSIKRPFPELRI 567
           +L +LD+ NN I +        L +L++L L+ N+                 +    L I
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 568 IDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMER 627
           +++  NGF   +P   F+ L  +                                     
Sbjct: 541 LNLESNGFDE-IPVEVFKDLFEL------------------------------------- 562

Query: 628 VLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL-TSLTALSVLNLS 686
                  IDL  N    +         SLK LN   N++          +   L+ L++ 
Sbjct: 563 -----KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 687 FNQLVGPIPQGKQFDSFQNDSFIGNLGLCG 716
           FN           F ++ N++      L  
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (635), Expect = 4e-72
 Identities = 133/688 (19%), Positives = 225/688 (32%), Gaps = 113/688 (16%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           L+L+ +  L  L   +       L  L++  N  +         +   L  LNL  +  S
Sbjct: 30  LNLTHN-QLRRLPAAN-FTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS 86

Query: 105 GIVPSQISRLSKLVALDLS----SDIPRTKFEQHT--------FNNLAK-------NLTE 145
            +     +  + L  L L       I    F +           N L+         L  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNG 205
           L+ LLL N ++ ++    L   +++SL  L L +  ++   P        L  L L++  
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 206 L---LTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRD--LKFLDLYVCYFDGQVPA 260
           L   LT  L     ++ +R L LS ++ S     T   L+   L  LDL     +     
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
           S + L QL    LE N     F      L  +  ++L              + T+ S+  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR------------SFTKQSI-- 312

Query: 321 LSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ 379
            S              L  L HL +  N + G   +    L    NL  L LSN+  + +
Sbjct: 313 -SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI---NLKYLSLSNSFTSLR 368

Query: 380 IFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFP-SSI 435
               + +     S   L  L++  N + ++    F     +  L +  N++  E      
Sbjct: 369 TLTNETFVSLAHSP--LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG--SIPQIFSKCYDLVALN 493
             L  I  + LS N    +     A   SL  L LR+   +   S P  F    +L  L+
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKIND--------AFPYWTATLPRLQVLVLRSN 545
           L++N +       L     LE+LD+ +N +             Y+   L  L +L L SN
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 546 SFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNS 605
            F          + +   EL+IID+  N    L PA  F +  ++               
Sbjct: 547 GFDEIP----VEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSL--------------- 586

Query: 606 AGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK-LSSLKLLNFSHN 664
                                       +++L  N    +  K  G    +L  L+   N
Sbjct: 587 ---------------------------KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 665 ILRGEIPVELTSLTALSVLNLSFNQLVG 692
                     +    ++ +N +   +  
Sbjct: 620 PFDCTCE---SIAWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  234 bits (598), Expect = 6e-67
 Identities = 101/545 (18%), Positives = 177/545 (32%), Gaps = 58/545 (10%)

Query: 171 SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTS--NWSSPLRILDLSIT 228
           S       +  L  + P D+     +  L L+ N  L      +   +S  L  LD+   
Sbjct: 5   SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHN-QLRRLPAANFTRYSQ-LTSLDVGFN 59

Query: 229 KFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGN 288
             S   P+    L  LK L+L           + +    LT L+L  N       + F  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 289 LSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLK---LG 345
              L  + L+H   +     +   L  L  L LS N+              S LK   L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 346 GNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNL 405
            N +    P     +     L  L L+N +L   +    +     +++  +R+L + ++ 
Sbjct: 180 SNQIKEFSPGCFHAIG---RLFGLFLNNVQLGPSLT---EKLCLELANTSIRNLSLSNSQ 233

Query: 406 LQRLP-----FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLA 460
           L          +  + +  L +S N L      S   L  +EY  L  N++  +    L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 461 NFDSLSLLDLRKNQFRGSI---------PQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511
              ++  L+L+++  + SI            F     L  LN+ DN++ G          
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 512 DLEVLDVGNNKINDAFPYWTA----TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRI 567
           +L+ L + N+  +                L +L L  N                   L +
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE----SDAFSWLGHLEV 409

Query: 568 IDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMER 627
           +D+  N     L  + ++ L+ +       I L Y     Y Q                 
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFE-----IYLSYNK---YLQLTRNSFAL--------- 452

Query: 628 VLNIFTTIDLSNNRFEGM--IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL 685
            +     + L     + +   P     L +L +L+ S+N +       L  L  L +L+L
Sbjct: 453 -VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 686 SFNQL 690
             N L
Sbjct: 512 QHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  205 bits (524), Expect = 9e-57
 Identities = 89/491 (18%), Positives = 162/491 (32%), Gaps = 77/491 (15%)

Query: 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED 275
            +    + D S  K + ++PD +    ++  L+L          A+ +   QLT L++  
Sbjct: 2   CTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 276 NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS 335
           N  S   P++   L  L  ++L H   +     +    T L+ L L  N           
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 336 CLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394
               L  L L  N L          L    NL EL LSNNK+      L    ++  ++ 
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLE---NLQELLLSNNKIQA----LKSEELDIFANS 171

Query: 395 ELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSIC---NLSTIEYLNLSN 448
            L+ L++ SN ++      F    R+  L +++ +L       +C     ++I  L+LSN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 449 NSLSGMIPQCLANFD--SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS 506
           + LS             +L++LDL  N         F+    L    L  N ++     S
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 507 LANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELR 566
           L    ++  L++  +                    +   S             +    L 
Sbjct: 292 LHGLFNVRYLNLKRS---------------FTKQSISLASLPKID----DFSFQWLKCLE 332

Query: 567 IIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEME 626
            +++  N   G+  +  F  L  + +     + L                          
Sbjct: 333 HLNMEDNDIPGI-KSNMFTGLINLKY-----LSLSN------------------------ 362

Query: 627 RVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLS 686
              +  +   L+N  F  +        S L +LN + N +        + L  L VL+L 
Sbjct: 363 ---SFTSLRTLTNETFVSL------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 687 FNQLVGPIPQG 697
            N++   +   
Sbjct: 414 LNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (364), Expect = 6e-36
 Identities = 69/341 (20%), Positives = 116/341 (34%), Gaps = 36/341 (10%)

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLS 421
           +    D S+ KLT          V       +  L++  N L+RLP   F   S++  L 
Sbjct: 5   SHEVADCSHLKLTQ---------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
           V  N ++   P     L  ++ LNL +N LS +  +  A   +L+ L L  N  +     
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL--PRLQV 539
            F K  +L+ L+L+ N L      +     +L+ L + NNKI               L+ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 540 LVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQ--SLKAMMHGDNDD 597
           L L SN          P        L  + ++       L  +     +  ++ +     
Sbjct: 176 LELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN----- 226

Query: 598 IDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLK 657
           + L     +      +  L  K  +L         T +DLS N    +       L  L+
Sbjct: 227 LSLSNSQLSTTSN--TTFLGLKWTNL---------TMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 658 LLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK 698
                +N ++      L  L  +  LNL  +     I    
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  256 bits (657), Expect = 1e-75
 Identities = 98/617 (15%), Positives = 195/617 (31%), Gaps = 91/617 (14%)

Query: 13  VTYPKTKSWNKDGDCCSW---DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQ 69
                  +WN + +   W    G+  +   G V GL L      G +     +  L  L+
Sbjct: 52  FGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA--IGQLTELE 108

Query: 70  KLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRT 129
            L L  +     +        +                 + +    +    DL  D   +
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168

Query: 130 KFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPID 189
             +Q +    ++   +   +   +    + V  +++ L+                     
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTK-------------------- 207

Query: 190 IFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249
                 LRQ  + ++          N        +    +          NL+DL  +++
Sbjct: 208 ------LRQFYMGNS-----PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQF--------SGEFPDVFGNLSKLTRISLAHLN 301
           Y C    ++P  L  L ++ ++N+  N+           +         K+  I + + N
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 302 F-TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNL 360
             T  +  S   + +L +LE   NQ  G+LP   S + L+ L L  N +   IP+     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGF 375

Query: 361 STSENLVELDLSNNKLTG--QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRI- 417
           +    +  L  ++NKL     IF              +  +D   N +  +       + 
Sbjct: 376 TE--QVENLSFAHNKLKYIPNIFDAKSVS-------VMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 418 ---------RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM-------IPQCLAN 461
                      +++S+N+++          S +  +NL  N L+ +         +   N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 462 FDSLSLLDLRKNQFRGSIPQI-FSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520
              L+ +DLR N+          +    LV ++L+ N      P    N   L+   + N
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 521 ------NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574
                 N+    +P      P L  L + SN            I    P + ++DI  N 
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN----EKI---TPNISVLDIKDNP 598

Query: 575 FTGLLPARYFQSLKAMM 591
              +  +     ++A M
Sbjct: 599 NISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  246 bits (630), Expect = 1e-71
 Identities = 90/629 (14%), Positives = 182/629 (28%), Gaps = 117/629 (18%)

Query: 87  FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL 146
                ++T L+L     SG VP  I +L++L  L L S   +          +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI-SANMSD 135

Query: 147 RYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGL 206
                  +               + LI   + +   +              Q+    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 207 LT-----GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPAS 261
                    L        LR   +  + F  +         + ++   Y           
Sbjct: 196 TFVSKAVMRLTK------LRQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLK 244

Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL 321
             NLK LT + + +     + P     L ++  I++A             +   L+   +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPV 303

Query: 322 SRNQFVGQLPCHASCLPLSHLKLGGN-FLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI 380
                            +  + +G N      + + L  +     L  L+   N+L G++
Sbjct: 304 GEK--------------IQIIYIGYNNLKTFPVETSLQKMK---KLGMLECLYNQLEGKL 346

Query: 381 FQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPS--SI 435
                        ++L  L++  N +  +P      + ++  LS + NKL    P+    
Sbjct: 347 PAFGS-------EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398

Query: 436 CNLSTIEYLNLSNNSLSGM-------IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYD 488
            ++S +  ++ S N +  +       +        ++S ++L  NQ      ++FS    
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
           L ++NL  N L   +P +     +                        L  + LR N   
Sbjct: 459 LSSINLMGNMLTE-IPKNSLKDENENF----------------KNTYLLTSIDLRFNKLT 501

Query: 549 GPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY 608
             + ++  +     P L  ID+S N F+         +   +                  
Sbjct: 502 K-LSDDFRATT--LPYLVGIDLSYNSFSKFPTQ--PLNSSTL------------------ 538

Query: 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG 668
                             +   I    D   NR     P+ +    SL  L    N +R 
Sbjct: 539 ------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 669 EIPVELTSLTALSVLNLSFNQLVGPIPQG 697
            +  ++     +SVL++  N  +      
Sbjct: 581 -VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  205 bits (523), Expect = 7e-57
 Identities = 66/520 (12%), Positives = 157/520 (30%), Gaps = 87/520 (16%)

Query: 212 PTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVL 271
           P +NW+      +  +  +  +   ++ +   +  L L      G+VP ++  L +L VL
Sbjct: 56  PGANWNF-----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 272 NLEDNQFSG----EFPDVFGNLSKLTRISLAHLNFTGQLP--LSAFNLTQLSLLELSRNQ 325
            L  +          P          +     +++           + + L    ++ + 
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 326 FVGQLP-CHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
               +       L  + +    N +   +   +  L+    L +  + N+    +     
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT---KLRQFYMGNSPFVAEN---- 222

Query: 385 QWPVERISSVELRHLDVQSNLLQRLPFILS--SRIRFLSVSDNKLTGEFPSSICNLSTIE 442
               E   +    +        +           +  + V +     + P+ +  L  ++
Sbjct: 223 --ICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 443 YLNLSNNSL--------SGMIPQCLANFDSLSLLDLRKNQFR-GSIPQIFSKCYDLVALN 493
            +N++ N                     + + ++ +  N  +   +     K   L  L 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG-PIY 552
              N+LEG   P+  +   L  L++  N+I +    +     +++ L    N     P  
Sbjct: 337 CLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 553 NNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY 612
            +  S+      +  ID S N    +   + F  L                         
Sbjct: 396 FDAKSVSV----MSAIDFSYNEIGSV-DGKNFDPL------------------------- 425

Query: 613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG---- 668
                    D    + +N+ ++I+LSNN+      +     S L  +N   N+L      
Sbjct: 426 ---------DPTPFKGINV-SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 669 ---EIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
              +      +   L+ ++L FN+L   +    +  +   
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  203 bits (519), Expect = 2e-56
 Identities = 81/495 (16%), Positives = 159/495 (32%), Gaps = 65/495 (13%)

Query: 41  HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSF 100
            +I   ++S     ++  +    +     ++    N  N T +S    + TKL    +  
Sbjct: 160 DLIKDCINSDPQQKSIKKS--SRITLKDTQIGQLSN--NITFVSKAVMRLTKLRQFYMGN 215

Query: 101 SYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV 160
           S F      +                         ++NL     +L  + + N    + +
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKTEDLK------WDNL----KDLTDVEVYNCPNLTKL 265

Query: 161 PSSLLNLSSASLISLSL-GNCFLRGEFPIDIFHFPF-------LRQLTLSDNGLLTGNLP 212
           P+ L  L    +  +++  N  + GE   D +           ++ + +  N L T  + 
Sbjct: 266 PTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 213 TS--NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTV 270
           TS       L +L+    +  G      G+   L  L+L                +Q+  
Sbjct: 324 TSLQKMKK-LGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 271 LNLEDNQFSGEFPDVF--GNLSKLTRISLAHLNFTG-------QLPLSAFNLTQLSLLEL 321
           L+   N+     P++F   ++S ++ I  ++             L  + F    +S + L
Sbjct: 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 322 SRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSE-----NLVELDLSNNK 375
           S NQ         S    LS + L GN L   IP                L  +DL  NK
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 376 LTG--QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSS--------RIRFLSVSDN 425
           LT     F+    P        L  +D+  N   + P    +                 N
Sbjct: 500 LTKLSDDFRATTLP-------YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 426 KLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK 485
           +   E+P  I    ++  L + +N +   + + +    ++S+LD++ N            
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 486 CYDLVALNLNDNELE 500
             +     L  ++ +
Sbjct: 610 YIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 7e-20
 Identities = 26/285 (9%), Positives = 69/285 (24%), Gaps = 59/285 (20%)

Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG----SIPQIFSKCYDL 489
           S+ +   +  L+L     SG +P  +     L +L L  +  +       P+  S     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 490 VALNLNDNELEGKLPPSLA--NCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
                     +          +  DL    + ++    +    +    +   +   SN+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 548 HGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAG 607
                  V        +LR   +  + F                                
Sbjct: 196 TF-----VSKAVMRLTKLRQFYMGNSPFVAENI--------------------------- 223

Query: 608 YDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR 667
                                   +   +    +       +   L  L  +   +    
Sbjct: 224 ---------------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 668 GEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNL 712
            ++P  L +L  + ++N++ N+ +        + +  +      +
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  243 bits (621), Expect = 1e-70
 Identities = 112/562 (19%), Positives = 204/562 (36%), Gaps = 48/562 (8%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           LDLS + L      + + F    LQ L+L+  +         +   + L+ L L+ +   
Sbjct: 33  LDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQ 89

Query: 105 GIVPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSV-VPS 162
            +     S LS L  L     ++     E         +L  L+ L + +  + S  +P 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNL--ASLENFPI----GHLKTLKELNVAHNLIQSFKLPE 143

Query: 163 SLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLR----QLTLSDNGLLTGNLPTSNWSS 218
              NL++  L  L L +  ++  +  D+     +      L LS N  +    P +    
Sbjct: 144 YFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI 200

Query: 219 PLRILDLSITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQV------PASLSNLKQLTVL 271
            L  L L     S  +    I  L  L+   L +  F  +        ++L  L  LT+ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 272 NLEDNQ---FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG 328
                    +  +  D+F  L+ ++  SL  +        S         LEL   +F G
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKF-G 317

Query: 329 QLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPV 388
           Q P   +    S  +L      G       +L    +L  LDLS N L+ +         
Sbjct: 318 QFP---TLKLKSLKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCSQSD-- 369

Query: 389 ERISSVELRHLDVQSNLLQRLP--FILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLN 445
               +  L++LD+  N +  +   F+   ++  L    + L      S+  +L  + YL+
Sbjct: 370 --FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI-PQIFSKCYDLVALNLNDNELEGKLP 504
           +S+               SL +L +  N F+ +  P IF++  +L  L+L+  +LE   P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPE 564
            +  +   L+VL++ +N       +    L  LQVL    N            ++     
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ---ELQHFPSS 544

Query: 565 LRIIDISRNGFTGLLPARYFQS 586
           L  +++++N F      + F  
Sbjct: 545 LAFLNLTQNDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  239 bits (611), Expect = 2e-69
 Identities = 110/580 (18%), Positives = 188/580 (32%), Gaps = 72/580 (12%)

Query: 135 TFNNLAKNLTE--------LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEF 186
           T+  +  N  +         + L L    +  +   S  +     L  L L  C ++   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQTIE 68

Query: 187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKF 246
                    L  L L+ N + +  L   +  S L+ L    T  +      IG+L+ LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 247 LDLYVCYFDG-QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA---HLNF 302
           L++        ++P   SNL  L  L+L  N+    +      L ++  ++L+    LN 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLP--CHASCLPLSHLKLGGNFLDGRIPSWLFNL 360
              +   AF   +L  L L  N     +   C      L   +L             F+ 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 361 STSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL-PFILSSRIRF 419
           S  E L  L +   +L    + LD           +    + S  ++R+  F  +   + 
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ--FRG 477
           L + + K        + +L       L+  S  G       +  SL  LDL +N   F+G
Sbjct: 309 LELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT-ATLPR 536
              Q       L  L+L+ N +   +  +      LE LD  ++ +     +    +L  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 537 LQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDND 596
           L  L +               I      L ++ ++ N F        F  L+ +      
Sbjct: 423 LIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------ 472

Query: 597 DIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL 656
                                               T +DLS  + E + P     LSSL
Sbjct: 473 ------------------------------------TFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 657 KLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696
           ++LN SHN            L +L VL+ S N ++    Q
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  238 bits (608), Expect = 6e-69
 Identities = 124/638 (19%), Positives = 222/638 (34%), Gaps = 108/638 (16%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQ 133
           C + N  KI  N        +L+LSF+    +         +L  LDLS  +I     E 
Sbjct: 14  CMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIED 69

Query: 134 HTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHF 193
             +    ++L+ L  L+L    + S+   +   LSS  L  L      L       I H 
Sbjct: 70  GAY----QSLSHLSTLILTGNPIQSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHL 123

Query: 194 PFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
             L++L ++ N +                        S K+P+   NL +L+ LDL    
Sbjct: 124 KTLKELNVAHNLIQ-----------------------SFKLPEYFSNLTNLEHLDLSSNK 160

Query: 254 FDGQVPASLSNLKQLTV----LNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS 309
                   L  L Q+ +    L+L  N  +   P  F  +  L +++L +   +  +  +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219

Query: 310 AF-NLTQLSLLELSRNQFVGQLPCHA-------SCLPLSHLKLGGNFLDGRIPSWLFNLS 361
               L  L +  L   +F  +                L+  +    +LD  +   +   +
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 362 TSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLS 421
              N+    L +  +            +   +   +HL++ +    + P +    ++ L+
Sbjct: 280 CLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLS--GMIPQCLANFDSLSLLDLRKNQFRGSI 479
            + NK       S  +L ++E+L+LS N LS  G   Q      SL  LDL  N     +
Sbjct: 332 FTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTATLPRLQ 538
              F     L  L+   + L+     S   +  +L  LD+ +     AF      L  L+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 539 VLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDI 598
           VL +  NSF      ++ +       L  +D+S+     L P   F SL ++        
Sbjct: 449 VLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSP-TAFNSLSSL-------- 496

Query: 599 DLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKL 658
                                               +++S+N F  +       L+SL++
Sbjct: 497 ----------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 659 LNFSHNILRGEIPVELTSL-TALSVLNLSFNQLVGPIP 695
           L++S N +      EL    ++L+ LNL+ N       
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  159 bits (405), Expect = 2e-41
 Identities = 76/479 (15%), Positives = 134/479 (27%), Gaps = 98/479 (20%)

Query: 233 KIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKL 292
           KIPD +      K LDL           S  +  +L VL+L   +        + +LS L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 293 TRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGR 352
           +                                                L L GN +   
Sbjct: 79  S-----------------------------------------------TLILTGNPIQSL 91

Query: 353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFI 412
                  LS   +L +L      L                          +  +  L   
Sbjct: 92  ALGAFSGLS---SLQKLVAVETNLASLE----------------------NFPIGHLK-- 124

Query: 413 LSSRIRFLSVSDNKLTG-EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSL---- 467
               ++ L+V+ N +   + P    NL+ +E+L+LS+N +  +    L     + L    
Sbjct: 125 ---TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 468 LDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLDVGNNKINDA 526
           LDL  N      P  F +   L  L L +N     +    +     LEV  +   +  + 
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 527 FPYWTAT------LPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP 580
                        L  L +   R         +++  +      +    +       +  
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDY-YLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 581 ARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNN 640
             Y    + +   +        +      +      + KG +   E  L     +DLS N
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT--FTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 641 R--FEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG 697
              F+G   +     +SLK L+ S N +   +      L  L  L+   + L       
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 7e-19
 Identities = 51/257 (19%), Positives = 83/257 (32%), Gaps = 26/257 (10%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           LDLS + L      + + F    L+ L+L+ N      +SSNF    +L HL+   S   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 105 GIVPSQI-SRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSV 159
            +    +   L  L+ LD+S           F           L+ L  L +        
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---------GLSSLEVLKMAGNSFQEN 460

Query: 160 VPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP 219
               +      +L  L L  C L    P        L+ L +S N               
Sbjct: 461 FLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN 518

Query: 220 -LRILDLSITKFSGKIPDTIGNL-RDLKFLDL----YVCYFDGQVPASLSNLKQLTVLNL 273
            L++LD S+          + +    L FL+L    + C    +  + L  +K    L +
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC--TCEHQSFLQWIKDQRQLLV 576

Query: 274 EDNQFSGEFPDVFGNLS 290
           E  +     P     + 
Sbjct: 577 EVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 5e-15
 Identities = 42/266 (15%), Positives = 74/266 (27%), Gaps = 80/266 (30%)

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
           +  +  I Y  +  N     IP  L    S   LDL  N  R      F    +L  L+L
Sbjct: 4   VEVVPNITYQCMELNFYK--IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           +  E++     +  +   L  L +  N I        + L  LQ L              
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-------------- 105

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM 614
                                  L        LK +                        
Sbjct: 106 --------------VAVETNLASLENF-PIGHLKTL------------------------ 126

Query: 615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRGEIPVE 673
                               +++++N  +   +P+    L++L+ L+ S N ++     +
Sbjct: 127 ------------------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 674 LTSLTALSV----LNLSFNQLVGPIP 695
           L  L  + +    L+LS N +    P
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 55/190 (28%)

Query: 505 PSLANCGDLEVLDVGNN--KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF 562
           P +    ++    +  N  KI D  P         + L L  N        +  S    F
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFS----F 51

Query: 563 PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVD 622
           PEL+++D+SR     +     +QSL  +                                
Sbjct: 52  PELQVLDLSRCEIQTIEDG-AYQSLSHL-------------------------------- 78

Query: 623 LEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSV 682
                     +T+ L+ N  + +       LSSL+ L      L       +  L  L  
Sbjct: 79  ----------STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 683 LNLSFNQLVG 692
           LN++ N +  
Sbjct: 129 LNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692
            T       F   IP  +    S K L+ S N LR        S   L VL+LS  ++  
Sbjct: 10  ITYQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 693 PIPQGKQFDSFQN 705
                    ++Q+
Sbjct: 67  IED-----GAYQS 74

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  236 bits (603), Expect = 2e-66
 Identities = 109/624 (17%), Positives = 200/624 (32%), Gaps = 91/624 (14%)

Query: 6   SSHCDAAVTYPKTKSWNKDGDCCSWDGIICDEMT--GHVIGLDLSSSWLLGTLHPNSTLF 63
             +         + +WN + +   W      ++   G V GL L+     G + P++ + 
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-PDA-IG 344

Query: 64  LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
            L  L+ L+   +    +       + T                   +    +L   DL 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR 183
            D                        +  N +M  +   S ++L    + +L+    F+ 
Sbjct: 405 QD-----------------------AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI- 440

Query: 184 GEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRD 243
                 I     L+ +  +++          N +      +    K       +  NL+D
Sbjct: 441 ---SKAIQRLTKLQIIYFANS-----PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 244 LKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG---------EFPDVFGNLSKLTR 294
           L  ++LY C    Q+P  L +L +L  LN+  N+               D      K+  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 295 ISLAHLNFTGQLPLSA--FNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGR 352
             + + N     P SA    + +L LL+   N+    L    + + L+ LKL  N ++  
Sbjct: 553 FYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE- 609

Query: 353 IPSWLFNLSTSENLVELDLSNNKLTG--QIFQLDQWPVERISSVELRHLDVQSNLLQRLP 410
           IP      +    +  L  S+NKL     IF              +  +D   N +    
Sbjct: 610 IPEDFCAFTD--QVEGLGFSHNKLKYIPNIFNAKSVY-------VMGSVDFSYNKIGSEG 660

Query: 411 FILSS--------RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS-------GMI 455
             +S             +++S N++           S I  + LSNN ++          
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 456 PQCLANFDSLSLLDLRKNQFRGSIPQI-FSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
                N   L+ +DLR N+          +    L  ++++ N      P    N   L+
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779

Query: 515 VL------DVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRII 568
                   D   N+I   +P    T P L  L + SN         V    +  P+L I+
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-----RKVDE--KLTPQLYIL 832

Query: 569 DISRNGFTGLLPARYFQSLKAMMH 592
           DI+ N    +        ++A M+
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMY 856

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  226 bits (578), Expect = 4e-63
 Identities = 92/663 (13%), Positives = 184/663 (27%), Gaps = 138/663 (20%)

Query: 77  DFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF 136
           D  G +   +     ++T L+L+     G VP  I +L++L  L   +            
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGT------------ 356

Query: 137 NNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFL 196
           ++                   +V      +      +S    +        + + +   L
Sbjct: 357 HSE------------------TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 197 RQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSG------KIPDTIGNLRDLKFLDLY 250
               L  + +                + L  T+          I   I  L  L+ +   
Sbjct: 399 NLSDLLQDAINRNPEMKP--IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 251 VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSA 310
              F        +        N +  +        + NL  LT + L +     QLP   
Sbjct: 457 NSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 311 FNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELD 370
           ++L +L  L ++ N+ +      A                 R+            +    
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADW--------------TRLADDEDTGP---KIQIFY 554

Query: 371 LSNNKLTG-----QIFQLDQWPVERISSVELRHLDVQSNLLQRLP-FILSSRIRFLSVSD 424
           +  N L        + ++ +          L  LD   N ++ L  F  + ++  L +  
Sbjct: 555 MGYNNLEEFPASASLQKMVK----------LGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604

Query: 425 NKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQC--LANFDSLSLLDLRKNQFRGSIPQ 481
           N++  E P   C     +E L  S+N L   IP      +   +  +D   N+       
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 482 IFS-----KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND-------AFPY 529
           I       K  +   + L+ NE++       A    +  + + NN +             
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
                  L  + LR N     + ++  +     P L  +D+S N F+         +   
Sbjct: 723 NYKNTYLLTTIDLRFNKLTS-LSDDFRATT--LPYLSNMDVSYNCFSSFPTQ--PLNSSQ 777

Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKE 649
           +                                    +   I    D   NR     P  
Sbjct: 778 L------------------------------------KAFGIRHQRDAEGNRILRQWPTG 801

Query: 650 VGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL-VGPIPQGKQFDSFQNDSF 708
           +    SL  L    N +R ++  +L     L +L+++ N      +     +        
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 709 IGN 711
           + +
Sbjct: 859 LYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (475), Expect = 2e-49
 Identities = 60/520 (11%), Positives = 143/520 (27%), Gaps = 93/520 (17%)

Query: 214 SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
            NW+      +  +  +  +    + N   +  L L      G+VP ++  L +L VL+ 
Sbjct: 300 LNWN-----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF 354

Query: 274 EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQL-PLSAFNLTQLSLLELSRNQFVGQLPC 332
             +  +                             +      +L+L +L ++    + P 
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPE 413

Query: 333 HASCLPLSHLKLGGNFLDG------RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW 386
                  S + L    +         I   +  L+    L  +  +N+  T     +D  
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT---KLQIIYFANSPFTYDNIAVDW- 469

Query: 387 PVERISSVELRHLDVQSNLLQRLPFILS--SRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
                           +   +      S    +  + + +     + P  + +L  ++ L
Sbjct: 470 ---------EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 445 NLSNNSLSGM---------IPQCLANFDSLSLLDLRKNQFRG-SIPQIFSKCYDLVALNL 494
           N++ N              +         + +  +  N            K   L  L+ 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
             N++      +      L  L +  N+I +    + A   +++ L    N         
Sbjct: 581 VHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY----- 633

Query: 555 VPSIK--RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY 612
           +P+I   +    +  +D S N                                       
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI------------------------------ 663

Query: 613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR----- 667
                     ++  + +N  +T+ LS N  +    +     S +  +  S+N++      
Sbjct: 664 -------SCSMDDYKGINA-STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 668 --GEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
                     +   L+ ++L FN+L   +    +  +   
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (401), Expect = 3e-40
 Identities = 63/435 (14%), Positives = 133/435 (30%), Gaps = 54/435 (12%)

Query: 60  STLFLLHHLQKLNLACNDFNG------------------TKISSNFGQFTKLTHLNLSFS 101
             +  L  LQ +  A + F                         ++     LT + L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 102 YFSGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMF 157
                +P  +  L +L +L+++        + K +     +      +++   +    + 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 158 SVVPSSLL-NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTS-- 214
               S+ L  +    L  L   +  +R            L  L L  N +    +P    
Sbjct: 562 EFPASASLQKMVK--LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI--EEIPEDFC 615

Query: 215 NWSSPLRILDLSITKFSGKIPDT--IGNLRDLKFLDLYVCYFDGQ-----VPASLSNLKQ 267
            ++  +  L  S  K    IP+     ++  +  +D        +               
Sbjct: 616 AFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT-------GQLPLSAFNLTQLSLLE 320
            + + L  N+      ++F   S ++ I L++   T            +  N   L+ ++
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 321 LSRNQFVGQLPCHASCLPLSHLK---LGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT 377
           L  N+    L        L +L    +  N      P+   N S    L    + + +  
Sbjct: 735 LRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS---QLKAFGIRHQRDA 789

Query: 378 GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICN 437
                L QWP    +   L  L + SN ++++   L+ ++  L ++DN       +S+C 
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCP 849

Query: 438 LSTIEYLNLSNNSLS 452
                   L  +   
Sbjct: 850 YIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (400), Expect = 5e-40
 Identities = 61/493 (12%), Positives = 137/493 (27%), Gaps = 99/493 (20%)

Query: 221 RILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG 280
             LD    ++     +   +  +  F +  +  +  Q    L N  ++T L+L      G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 281 EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN-------QFVGQLPCH 333
             PD  G L++L  +S    + T    L         + E  ++       +        
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 334 ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG---QIFQLDQWPVER 390
            +   L    +  N     I         S    ++    N++T     I +L       
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSR---ISLKDTQIGNLTNRITFISKAIQRL------- 447

Query: 391 ISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS 450
               +L+ +   ++        +       +    K       S  NL  +  + L N  
Sbjct: 448 ---TKLQIIYFANSPFTYDNIAVDWED--ANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 451 LSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC 510
               +P  L +   L  L++  N+   +                       +L       
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW---------------TRLADDEDTG 547

Query: 511 GDLEVLDVGNNKINDAFPYWT-ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID 569
             +++  +G N + +     +   + +L +L    N        ++ +      +L  + 
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-----HLEAFGTN-VKLTDLK 601

Query: 570 ISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL 629
           +  N    + P  +      +                                       
Sbjct: 602 LDYNQIEEI-PEDFCAFTDQV--------------------------------------- 621

Query: 630 NIFTTIDLSNNRFEGMIPK--EVGKLSSLKLLNFSHNILRGEIPVELTSLTA-----LSV 682
                +  S+N+ +  IP       +  +  ++FS+N +  E      S+        S 
Sbjct: 622 ---EGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 683 LNLSFNQLVGPIP 695
           + LS+N++     
Sbjct: 678 VTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 9e-22
 Identities = 60/490 (12%), Positives = 144/490 (29%), Gaps = 90/490 (18%)

Query: 240 NLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299
              +++++D+ V     +V   L  +K      +   + S E  +      K   I +A 
Sbjct: 151 LFSNIRYVDVTVMNSFNRVTTELKGMK------VTYKEDSKEHQNPDNANDKYMDIGVAT 204

Query: 300 LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN 359
            +    LP   + +   +         + +       +      +  N L       +  
Sbjct: 205 CDSAVWLPAGTYQVVAYTTYS---QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQL 261

Query: 360 LSTSENLVE---LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL--- 413
             T+E + +   L      L G+ ++     +         + + + ++    P +    
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321

Query: 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
           + R+  LS++     G  P +I  L+ ++ L+   +S +           +  + + RK+
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 474 QFRGSIPQIFSKCY------DLVALNLNDNELEGKLPP-SLANCGDLEVLDVGNN--KIN 524
           + R    ++F          DL+   +N N     +   S  +  D ++ ++ N    I+
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441

Query: 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF 584
            A       L +LQ++   ++ F                +    +              +
Sbjct: 442 KAI----QRLTKLQIIYFANSPFTYDN---------IAVDWEDANSDYAKQYENEELS-W 487

Query: 585 QSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG 644
            +LK +                                          T ++L N     
Sbjct: 488 SNLKDL------------------------------------------TDVELYNCPNMT 505

Query: 645 MIPKEVGKLSSLKLLNFSHNILRG---------EIPVELTSLTALSVLNLSFNQLVGPIP 695
            +P  +  L  L+ LN + N              +  +  +   + +  + +N L    P
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FP 564

Query: 696 QGKQFDSFQN 705
                     
Sbjct: 565 ASASLQKMVK 574

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (552), Expect = 4e-61
 Identities = 96/526 (18%), Positives = 168/526 (31%), Gaps = 47/526 (8%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           LDL+   +        T    H L  L L  N        +       L HL    +  S
Sbjct: 62  LDLTRCQIYWI--HEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGIS 118

Query: 105 GIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV 160
            I    +     L +L L     S I   K              +L+ L   N  +  + 
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGF---------PTEKLKVLDFQNNAIHYLS 169

Query: 161 PSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSS-- 218
              + +L  A+ +SL+L    +        F     + L       L         S+  
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 219 ---PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED 275
                   D+     S  + + +  +  ++ ++L   YF      +      L  L+L  
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 276 NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA- 334
              S E P     LS L ++ L+   F     +SA N   L+ L +  N    +L     
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 335 -SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG---QIFQLDQWPVER 390
            +   L  L L  + +          L    +L  L+LS N+      + F+        
Sbjct: 347 ENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-------- 397

Query: 391 ISSVELRHLDVQSNLLQRLP----FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNL 446
               +L  LD+    L+       F     ++ L++S + L          L  +++LNL
Sbjct: 398 -ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 447 SNNSLSGMIPQC---LANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503
             N       Q    L     L +L L            F+    +  ++L+ N L    
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549
             +L++   +  L++ +N I+   P     L + + + LR N    
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (552), Expect = 5e-61
 Identities = 99/554 (17%), Positives = 176/554 (31%), Gaps = 50/554 (9%)

Query: 157 FSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT------GN 210
            + +P +L N    S   L      L             L  L L+   +         +
Sbjct: 24  LNEIPGTLPN----STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

Query: 211 LPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTV 270
                    L  L L+           +   + LK L              L N K L  
Sbjct: 80  QHR------LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 271 LNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL--SRNQFVG 328
           L L  N  S           KL  +   +            +L Q + L L  + N   G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 329 QLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPV 388
             P          L  GG      I   L N +   +L      +         +     
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-SLWLGTFEDMDDE----DISPAVF 248

Query: 389 ERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLN 445
           E +  + +  +++Q +    +    F   S ++ L ++   L+ E PS +  LST++ L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI-PQIFSKCYDLVALNLNDNELE--GK 502
           LS N    +     +NF SL+ L ++ N  R  +         +L  L+L+ +++E    
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 503 LPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF 562
               L N   L+ L++  N+            P+L++L L              S  +  
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNL 424

Query: 563 PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVD 622
             L+++++S +        + F  L A+ H     ++L   +    +   +  L      
Sbjct: 425 HLLKVLNLSHSLLDIS-SEQLFDGLPALQH-----LNLQGNHFPKGNIQKTNSLQT---- 474

Query: 623 LEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSV 682
                 L     + LS      +       L  +  ++ SHN L       L+ L  +  
Sbjct: 475 ------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527

Query: 683 LNLSFNQLVGPIPQ 696
           LNL+ N +   +P 
Sbjct: 528 LNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (548), Expect = 2e-60
 Identities = 115/560 (20%), Positives = 198/560 (35%), Gaps = 47/560 (8%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           L+ S + +L T+   +    L +L  L+L         I  + F    +L  L L+ +  
Sbjct: 38  LEFSFN-VLPTIQNTT-FSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPL 93

Query: 104 SGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSV 159
             +  + +S    L  L       S I               N   L  L L +  + S+
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPL---------HNQKTLESLYLGSNHISSI 144

Query: 160 VPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP 219
                       L  L   N  +      D+        L+L+ NG     +    + S 
Sbjct: 145 KLPKGFPTE--KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 220 -LRILDLSITKFSGKIPD-----TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
             + L+   T+    I       TI +L    F D+        V   L  +  +  +NL
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINL 261

Query: 274 EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH 333
           + + F     + F   S L  + L   + + +LP     L+ L  L LS N+F       
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 334 ASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERIS 392
           AS  P L+HL + GN     + +        ENL ELDLS++ +        Q      +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSDCCNLQLR----N 374

Query: 393 SVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTG-EFPSSICNLSTIEYLNLSN 448
              L+ L++  N    L    F    ++  L ++  +L   +  S   NL  ++ LNLS+
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 449 NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ---IFSKCYDLVALNLNDNELEGKLPP 505
           + L     Q      +L  L+L+ N F     Q          L  L L+  +L      
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL 565
           +  +   +  +D+ +N++  +     + L  +  L L SN     +    PS+     + 
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL----PSLLPILSQQ 549

Query: 566 RIIDISRNGFTGLLPARYFQ 585
           R I++ +N         YF 
Sbjct: 550 RTINLRQNPLDCTCSNIYFL 569

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (538), Expect = 3e-59
 Identities = 121/627 (19%), Positives = 203/627 (32%), Gaps = 97/627 (15%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQ 133
           C +    +I            L  SF+    I  +  SRL  L  LDL+   I      +
Sbjct: 19  CENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHE 74

Query: 134 HTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHF 193
            TF +       L  L+L    +  +  ++L    +  L  L      +     I + + 
Sbjct: 75  DTFQSQ----HRLDTLVLTANPLIFMAETALSGPKA--LKHLFFIQTGISSIDFIPLHNQ 128

Query: 194 PFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
             L  L L  N + +  LP    +  L++LD           + + +L+    L L +  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 254 -FDGQVPASLSNLKQLTVLNLEDNQFSGEFPD--VFGNLSKLTRISLAHLNFTGQLPLSA 310
                +     +      LN    Q             +  L   +   ++     P   
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 311 FNLTQLSL--LELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLV 367
             L ++S+  + L ++ F         C   L  L L    L   +PS L  LS    L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLS---TLK 304

Query: 368 ELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL 427
           +L LS NK               +  +   +                  +  LS+  N  
Sbjct: 305 KLVLSANKFEN------------LCQISASNF---------------PSLTHLSIKGNTK 337

Query: 428 TGE-FPSSICNLSTIEYLNLSNNSL--SGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS 484
             E     + NL  +  L+LS++ +  S      L N   L  L+L  N+      + F 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 485 KCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543
           +C  L  L+L    L+ K   S   N   L+VL++ ++ ++ +       LP LQ L L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 544 SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM 603
            N F         S++     L I+ +S    + +     F SLK M             
Sbjct: 458 GNHFPKGNIQKTNSLQ-TLGRLEILVLSFCDLSSI-DQHAFTSLKMM------------- 502

Query: 604 NSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH 663
                                          +DLS+NR      + +  L  + L N + 
Sbjct: 503 -----------------------------NHVDLSHNRLTSSSIEALSHLKGIYL-NLAS 532

Query: 664 NILRGEIPVELTSLTALSVLNLSFNQL 690
           N +   +P  L  L+    +NL  N L
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (513), Expect = 9e-56
 Identities = 95/538 (17%), Positives = 162/538 (30%), Gaps = 76/538 (14%)

Query: 174 SLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT------GNLPTSNWSSPLRILDLSI 227
           + +  N  L  E P  +        L  S N L T        L        L  LDL+ 
Sbjct: 16  TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLIN------LTFLDLTR 66

Query: 228 TKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFG 287
            +      DT  +   L  L L           +LS  K L  L       S        
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 288 NLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG---QLPCHASCLPLSHLKL 344
           N   L  + L   + +       F   +L +L+   N       +            L L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 345 GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ-LDQWPVERISSVELRHLDVQS 403
            GN + G I    F+ +       L+    +    IF+ L    ++ +       +D + 
Sbjct: 187 NGNDIAG-IEPGAFDSA---VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 404 NLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD 463
                   +    +  +++  +       ++    S ++ L+L+   LS  +P  L    
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLS 301

Query: 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLDVGNNK 522
           +L  L L  N+F        S    L  L++  N    +L    L N  +L  LD+ ++ 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 523 IN--DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP 580
           I   D        L  LQ L L  N       +      +  P+L ++D++         
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNE----PLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 581 ARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNN 640
              FQ+L  +                                            ++LS++
Sbjct: 418 QSPFQNLHLL------------------------------------------KVLNLSHS 435

Query: 641 RFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVE---LTSLTALSVLNLSFNQLVGPIP 695
             +    +    L +L+ LN   N        +   L +L  L +L LSF  L     
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (422), Expect = 1e-43
 Identities = 79/472 (16%), Positives = 134/472 (28%), Gaps = 87/472 (18%)

Query: 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLT 293
           IP T+      + L+            + S L  LT L+L   Q      D F +  +L 
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 294 RISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDG 351
            + L        +  +A      L  L   +                L  L LG N +  
Sbjct: 85  TLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 352 RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF 411
                 F       L  LD  NN +                        +    +  L  
Sbjct: 144 IKLPKGFPTE---KLKVLDFQNNAIHY----------------------LSKEDMSSLQ- 177

Query: 412 ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLAN--FDSLSLLD 469
              +    L+++ N +         + +  + LN        +I + L N    SL L  
Sbjct: 178 --QATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 470 LRKNQFRGSIPQIFSKCYD--LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAF 527
                     P +F    +  + ++NL  +        +      L+ LD+    +++  
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-L 293

Query: 528 PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL 587
           P     L  L+ LVL +N F              FP L  + I  N     L     ++L
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLC----QISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 588 KAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFE--GM 645
           + +                                            +DLS++  E    
Sbjct: 350 ENL------------------------------------------RELDLSHDDIETSDC 367

Query: 646 IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG 697
              ++  LS L+ LN S+N               L +L+L+F +L     Q 
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (335), Expect = 2e-32
 Identities = 58/378 (15%), Positives = 116/378 (30%), Gaps = 51/378 (13%)

Query: 331 PCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVER 390
            C                L+  IP  L N     +   L+ S N L              
Sbjct: 7   KCIEKE-VNKTYNCENLGLN-EIPGTLPN-----STECLEFSFNVLPT------------ 47

Query: 391 ISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS 450
                     +Q+    RL       + FL ++  ++      +  +   ++ L L+ N 
Sbjct: 48  ----------IQNTTFSRLI-----NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 451 LSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC 510
           L  M    L+   +L  L   +                L +L L  N +     P     
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 511 GDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR--SNSFHGPIYNNVPSIKRPFPELRII 568
             L+VLD  NN I+       ++L +   L L    N         +          + +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-----AGIEPGAFDSAVFQSL 207

Query: 569 DISRNGFTGL-LPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTY--------K 619
           +        +        +++++  G  +D+D + ++ A ++    M +           
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
            +        +    +DL+       +P  +  LS+LK L  S N       +  ++  +
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 680 LSVLNLSFNQLVGPIPQG 697
           L+ L++  N     +  G
Sbjct: 327 LTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 7e-13
 Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%)

Query: 444 LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503
            N  N  L+  IP  L   +S   L+   N         FS+  +L  L+L   ++    
Sbjct: 17  YNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFP 563
             +  +   L+ L +  N +                  +   +  GP             
Sbjct: 74  EDTFQSQHRLDTLVLTANPLI----------------FMAETALSGP------------K 105

Query: 564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL 623
            L+ +   + G + +       + K +                                 
Sbjct: 106 ALKHLFFIQTGISSI-DFIPLHNQKTL--------------------------------- 131

Query: 624 EMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSV- 682
                     ++ L +N    +   +      LK+L+F +N +      +++SL   +  
Sbjct: 132 ---------ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 683 -LNLSFNQLVGPIPQGKQFDSFQNDSFIGN 711
            LNL+ N + G  P       FQ+ +F G 
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  214 bits (547), Expect = 2e-60
 Identities = 102/520 (19%), Positives = 176/520 (33%), Gaps = 38/520 (7%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           LDLS   +   +   +    LHHL  L L  N         +F   T L +L    +  +
Sbjct: 61  LDLSRCEIET-IEDKA-WHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLA 117

Query: 105 GIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSL 164
            +    I +L  L  L+++                  NLT L ++ L    + ++  + L
Sbjct: 118 SLESFPIGQLITLKKLNVA----HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 165 LNLS--SASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWS-SPLR 221
             L       +SL +    +        F    L +LTL  N   +  + T   + + L 
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 222 ILDLSITKFSGKI------PDTIGNLRDLKFLDLYVCYFD--GQVPASLSNLKQLTVLNL 273
           +  L + +F  +       P  +  L D+   +  + Y +           L  ++ ++L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 274 EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH 333
                            K   +S+              +L  L  L L+ N+        
Sbjct: 293 AGVSIKYLEDVPK--HFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG-SISFKK 346

Query: 334 ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS 393
            +   LS+L L  N L        ++   + +L  LDLS N                   
Sbjct: 347 VALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE------ 399

Query: 394 VELRHLDVQSNLLQRLP----FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN 449
            EL+HLD Q + L+R+     F+   ++ +L +S      +F      L+++  L ++ N
Sbjct: 400 -ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 450 SLSGMIPQC-LANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLA 508
           S          AN  +L+ LDL K Q       +F   + L  LN++ N L         
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 509 NCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
               L  LD   N+I  +          L    L +NS  
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  208 bits (531), Expect = 3e-58
 Identities = 113/612 (18%), Positives = 204/612 (33%), Gaps = 96/612 (15%)

Query: 90  FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELRY 148
            +   +++LSF+    +     S  S+L  LDLS  +I     E   +      L  L  
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAW----HGLHHLSN 84

Query: 149 LLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT 208
           L+L    + S  P S   L+S  L +L      L       I     L++L ++ N + +
Sbjct: 85  LILTGNPIQSFSPGSFSGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 209 GNLPT--SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKF----LDLYVCYFDGQVPASL 262
             LP   SN ++ L  +DLS         + +  LR+       LD+ +   D     + 
Sbjct: 143 CKLPAYFSNLTN-LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 263 SNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL 321
             +K L  L L  N  S         NL+ L    L    F  +  L  F  + +  L  
Sbjct: 202 QGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 322 SRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIF 381
                          + +   +L               L+   N+  + L+   +     
Sbjct: 261 ---------------VTIDEFRLTYTNDFSDDIVKFHCLA---NVSAMSLAGVSIK---- 298

Query: 382 QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441
               +  +     + + L +    L++ P +    ++ L+++ NK +         L ++
Sbjct: 299 ----YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSL 352

Query: 442 EYLNLSNNSLSGMIPQCLANFDSLSL--LDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499
            YL+LS N+LS       ++  + SL  LDL  N     +   F    +L  L+   + L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTL 411

Query: 500 EGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSI 558
           +     S   +   L  LD+        F      L  L  L +  NSF     +NV + 
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA- 470

Query: 559 KRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTY 618
                 L  +D+S+     +     F +L  +                            
Sbjct: 471 --NTTNLTFLDLSKCQLEQI-SWGVFDTLHRL---------------------------- 499

Query: 619 KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT 678
                           +++S+N    +      +L SL  L+ S N +     +      
Sbjct: 500 --------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 679 ALSVLNLSFNQL 690
           +L+  NL+ N +
Sbjct: 546 SLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  199 bits (508), Expect = 5e-55
 Identities = 108/561 (19%), Positives = 192/561 (34%), Gaps = 67/561 (11%)

Query: 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNG 205
            + + L    +  +   S  N S   L  L L  C +             L  L L+ N 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSE--LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 206 LLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG-QVPASLSN 264
           + + +  + +  + L  L    TK +      IG L  LK L++   +    ++PA  SN
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA---HLNFTGQLPLSAFNLTQLSLLEL 321
           L  L  ++L  N       +    L +  +++L+    LN    +   AF   +L  L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 322 SRNQFVGQLP--CHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG- 378
             N     +   C  +   L   +L            +F  S  E L ++ +   +LT  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLP-FILSSRIRFLSVSDNKLTGEFPSSICN 437
             F  D      +++  +  + +    ++ L       + + LS+   +L  +FP+   +
Sbjct: 272 NDFSDDIVKFHCLAN--VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL--D 326

Query: 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS--KCYDLVALNLN 495
           L  ++ L L+ N  S  I        SLS LDL +N    S    +S      L  L+L+
Sbjct: 327 LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT-ATLPRLQVLVLRSNSFHGPIYNN 554
            N     +  +     +L+ LD  ++ +     +    +L +L  L +   +        
Sbjct: 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--- 440

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM 614
              I      L  + ++ N F     +  F +   +                        
Sbjct: 441 -DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL------------------------ 475

Query: 615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL 674
                             T +DLS  + E +       L  L+LLN SHN L        
Sbjct: 476 ------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 675 TSLTALSVLNLSFNQLVGPIP 695
             L +LS L+ SFN++     
Sbjct: 518 NQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  194 bits (496), Expect = 2e-53
 Identities = 100/543 (18%), Positives = 176/543 (32%), Gaps = 58/543 (10%)

Query: 64  LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
           +    + ++L+ N       S +F  F++L  L+LS      I       L  L  L L+
Sbjct: 30  IPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 124 ----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGN 179
                      F           LT L  L+    ++ S+    +  L +  L  L++ +
Sbjct: 89  GNPIQSFSPGSF---------SGLTSLENLVAVETKLASLESFPIGQLIT--LKKLNVAH 137

Query: 180 CFLRGEFPIDIF-HFPFLRQLTLSDN---GLLTGNL-PTSNWSSPLRILDLSITKFSGKI 234
            F+        F +   L  + LS N    +   +L            LD+S+      I
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FI 196

Query: 235 PDTIGNLRDLKFLDLYVCYFDGQVPA-SLSNLKQLTVLNLEDNQFSGEF------PDVFG 287
            D       L  L L   +    +    L NL  L V  L   +F  E       P +  
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 288 NLSKLTR--ISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLG 345
            L  +T     L + N      +    L  +S + L+       L           L + 
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSII 315

Query: 346 GNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNL 405
              L       L  L +      L L+ NK +           ++++   L +LD+  N 
Sbjct: 316 RCQLKQFPTLDLPFLKS------LTLTMNKGSI--------SFKKVALPSLSYLDLSRNA 361

Query: 406 LQRLP-----FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP-QCL 459
           L          + ++ +R L +S N       ++   L  +++L+  +++L  +      
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDV 518
            + + L  LD+     +     IF     L  L +  N  +     +  AN  +L  LD+
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 519 GNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL 578
              ++         TL RLQ+L +  N+          S       L  +D S N     
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD----SSHYNQLYSLSTLDCSFNRIETS 536

Query: 579 LPA 581
              
Sbjct: 537 KGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  177 bits (450), Expect = 3e-47
 Identities = 96/532 (18%), Positives = 166/532 (31%), Gaps = 63/532 (11%)

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLT------GNLPTSNWSSPLRILDLSITKFSGKIPDTI 238
           + P DI      + + LS N L         N         L+ LDLS  +         
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE------LQWLDLSRCEIETIEDKAW 76

Query: 239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298
             L  L  L L         P S S L  L  L   + + +       G L  L ++++A
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136

Query: 299 HLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLP-----LSHLKLGGNFLDGR 352
           H         + F NLT L  ++LS N            L         L +  N +D  
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF- 195

Query: 353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQS-NLLQRLPF 411
           I    F       L EL L  N  +  I +     +  +    L   + +    L+    
Sbjct: 196 IQDQAFQGI---KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 412 IL-----SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLS 466
            +        I    ++      +       L+ +  ++L+  S+  +    +       
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQ 310

Query: 467 LLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN-- 524
            L + + Q +            L +L L  N+    +         L  LD+  N ++  
Sbjct: 311 SLSIIRCQLKQFPTLDLPF---LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFS 365

Query: 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF 584
               Y       L+ L L  N           +      EL+ +D   +    +     F
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 585 QSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG 644
            SL+ +++     +D+ Y N+        + LT     L          T+ ++ N F+ 
Sbjct: 421 LSLEKLLY-----LDISYTNTKIDFDGIFLGLT----SLN---------TLKMAGNSFKD 462

Query: 645 MIPKEV-GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP 695
                V    ++L  L+ S   L         +L  L +LN+S N L+    
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  172 bits (438), Expect = 9e-46
 Identities = 86/535 (16%), Positives = 156/535 (29%), Gaps = 96/535 (17%)

Query: 199 LTLSDNGL--LTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG 256
               D  L  +  ++P+S      + +DLS          +  N  +L++LDL  C  + 
Sbjct: 16  YQCMDQKLSKVPDDIPSS-----TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
               +   L  L+ L L  N      P  F  L+ L  +                 L  L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 317 SLLELSRNQFVG-QLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLS-TSENLVELDLSN 373
             L ++ N     +LP + S L  L H+ L  N++     + L  L    +  + LD+S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 374 NKLTG---QIFQL------------DQWPVERISSVELRHLDVQSNLLQR---------- 408
           N +     Q FQ             +   + +     L  L V   +L            
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 409 ----LPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS 464
               +  +    I    ++      +       L+ +  ++L+  S+  +    +     
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFK 308

Query: 465 LSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524
              L + + Q +            L +L L  N+    +         L  LD+  N ++
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALS 363

Query: 525 --DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPAR 582
                 Y       L+ L L  N           +      EL+ +D   +    +    
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 583 YFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRF 642
            F SL+ +                                            +D+S    
Sbjct: 419 AFLSLEKL------------------------------------------LYLDISYTNT 436

Query: 643 EGMIPKEVGKLSSLKLLNFSHNILRGEIPVE-LTSLTALSVLNLSFNQLVGPIPQ 696
           +         L+SL  L  + N  +         + T L+ L+LS  QL      
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (295), Expect = 2e-27
 Identities = 47/341 (13%), Positives = 102/341 (29%), Gaps = 26/341 (7%)

Query: 354 PSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP--- 410
           P  L         +     + KL+          V        +++D+  N L+ L    
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSK---------VPDDIPSSTKNIDLSFNPLKILKSYS 51

Query: 411 FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDL 470
           F   S +++L +S  ++      +   L  +  L L+ N +    P   +   SL  L  
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 471 RKNQFRGSIPQIFSKCYDLVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKINDAFPY 529
            + +          +   L  LN+  N +   KLP   +N  +L  +D+  N I      
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

Query: 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
               L     + L  +    PI        +   +L  + +  N  +  +     Q+L  
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKE 649
           +        +     +          L      +             L+          +
Sbjct: 231 LHVHRLILGEFKDERN----------LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 650 VGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
              L+++  ++ +   +  +   ++        L++   QL
Sbjct: 281 FHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (288), Expect = 1e-26
 Identities = 71/382 (18%), Positives = 130/382 (34%), Gaps = 47/382 (12%)

Query: 331 PCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVER 390
           PC     P    +     L  ++P  + +     +   +DLS N L      L  +    
Sbjct: 6   PCIEVV-PNITYQCMDQKLS-KVPDDIPS-----STKNIDLSFNPLKI----LKSYSFSN 54

Query: 391 ISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLS 447
            S   L+ LD+    ++ +    +     +  L ++ N +    P S   L+++E L   
Sbjct: 55  FSE--LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 448 NNSLSGMIPQCLANFDSLSLLDLRKNQFRG-SIPQIFSKCYDLVALNLNDNELEGKLPPS 506
              L+ +    +    +L  L++  N      +P  FS   +LV ++L+ N ++      
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 507 LANCGDL----EVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF 562
           L    +       LD+  N I+           +L  L LR N     I   + +  +  
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI---MKTCLQNL 228

Query: 563 PELRIIDISRNGFTGL-----LPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQY------ 611
             L +  +    F              + L  +     D+  L Y N    D        
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV---TIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 612 --YSMILTY-KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG 668
              +M L       LE       + ++ +   + +         L  LK L  + N  +G
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMN--KG 340

Query: 669 EIPVELTSLTALSVLNLSFNQL 690
            I  +  +L +LS L+LS N L
Sbjct: 341 SISFKKVALPSLSYLDLSRNAL 362

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (515), Expect = 6e-59
 Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 39/313 (12%)

Query: 214 SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ--VPASLSNLKQLTVL 271
           S+W       D     + G + DT      +  LDL          +P+SL+NL  L  L
Sbjct: 25  SSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 272 NLED-NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQL 330
            +   N   G  P     L++L  + + H N +G +P     +  L  L+ S N   G L
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 331 P-CHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVE 389
           P   +S   L  +   GN + G IP    + S       + +S N+LTG+I      P  
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSK--LFTSMTISRNRLTGKI------PPT 193

Query: 390 RISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN 449
             +++ L  +D+                     S N L G+      +    + ++L+ N
Sbjct: 194 -FANLNLAFVDL---------------------SRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLAN 509
           SL+  + + +    +L+ LDLR N+  G++PQ  ++   L +LN++ N L G++P    N
Sbjct: 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-N 289

Query: 510 CGDLEVLDVGNNK 522
               +V    NNK
Sbjct: 290 LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (508), Expect = 7e-58
 Identities = 82/315 (26%), Positives = 124/315 (39%), Gaps = 54/315 (17%)

Query: 414 SSRIRFLSVSDNKLTGEF--PSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDL 470
           + R+  L +S   L   +  PSS+ NL  + +L +   N+L G IP  +A    L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 471 RKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYW 530
                 G+IP   S+   LV L+ + N L G LPPS+++  +L  +    N+I+ A P  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 531 TATLPRL-QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
             +  +L   + +  N   G I     ++      L  +D+SRN   G      F S K 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-----LAFVDLSRNMLEGDASVL-FGSDKN 222

Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKE 649
                                                        I L+ N     +  +
Sbjct: 223 T------------------------------------------QKIHLAKNSLAFDLG-K 239

Query: 650 VGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFI 709
           VG   +L  L+  +N + G +P  LT L  L  LN+SFN L G IPQG     F   ++ 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

Query: 710 GNLGLCGFALTQQCS 724
            N  LCG  L   C+
Sbjct: 300 NNKCLCGSPL-PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (507), Expect = 8e-58
 Identities = 73/327 (22%), Positives = 119/327 (36%), Gaps = 40/327 (12%)

Query: 161 PSSLLNLSSAS--LISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGL-LTGNLPTS--N 215
              L N ++ S  L +    N    G           +  L LS   L     +P+S  N
Sbjct: 15  KKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 216 WSSPLRILDLS-ITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLE 274
               L  L +  I    G IP  I  L  L +L +      G +P  LS +K L  L+  
Sbjct: 75  LPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 275 DNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS-LLELSRNQFVGQLPCH 333
            N  SG  P    +L  L  I+      +G +P S  + ++L   + +SRN+  G++P  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 334 ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS 393
            + L L+ + L  N L+G       +     N  ++ L+ N L   + ++          
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDK---NTQKIHLAKNSLAFDLGKV---------- 240

Query: 394 VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG 453
                                  +  L + +N++ G  P  +  L  +  LN+S N+L G
Sbjct: 241 ---------GLS---------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 454 MIPQCLANFDSLSLLDLRKNQFRGSIP 480
            IPQ   N     +     N+     P
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 1e-52
 Identities = 75/311 (24%), Positives = 127/311 (40%), Gaps = 41/311 (13%)

Query: 20  SWNKDGDCC--SWDGIICDEMT--GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLA- 74
           SW    DCC  +W G++CD  T    V  LDLS   L       S+L  L +L  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
            N+  G  I     + T+L +L ++ +  SG +P  +S++  LV LD S           
Sbjct: 86  INNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS----------- 133

Query: 135 TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFP 194
            +N L+                   +P S+ +L   +L+ ++     + G  P     F 
Sbjct: 134 -YNALS-----------------GTLPPSISSLP--NLVGITFDGNRISGAIPDSYGSFS 173

Query: 195 FLRQ-LTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
            L   +T+S N  LTG +P +  +  L  +DLS     G      G+ ++ + + L    
Sbjct: 174 KLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL 313
               +   +   K L  L+L +N+  G  P     L  L  ++++  N  G++P    NL
Sbjct: 233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 314 TQLSLLELSRN 324
            +  +   + N
Sbjct: 291 QRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (461), Expect = 2e-51
 Identities = 67/332 (20%), Positives = 111/332 (33%), Gaps = 66/332 (19%)

Query: 247 LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF--PDVFGNLSKLTRISLAHLN-FT 303
            D     + G +  + +   ++  L+L        +  P    NL  L  + +  +N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCH-ASCLPLSHLKLGGNFLDGRIPSWLFNLST 362
           G +P +   LTQL  L ++     G +P   +    L  L    N L G +P  + +L  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP- 149

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSV 422
             NLV +    N+++G I                                          
Sbjct: 150 --NLVGITFDGNRISGAI------------------------------------------ 165

Query: 423 SDNKLTGEFPSSICNLST-IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
                    P S  + S     + +S N L+G IP   AN  +L+ +DL +N   G    
Sbjct: 166 ---------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215

Query: 482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV 541
           +F    +   ++L  N L   L   +    +L  LD+ NN+I    P     L  L  L 
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 542 LRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573
           +  N+  G I    P          +   + N
Sbjct: 275 VSFNNLCGEI----PQGG-NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE--IPVELTSLTALSVLNLS-FNQ 689
            T D  N  + G++     +   +  L+ S   L     IP  L +L  L+ L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 690 LVGPIP 695
           LVGPIP
Sbjct: 89  LVGPIP 94

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (431), Expect = 6e-45
 Identities = 106/536 (19%), Positives = 188/536 (35%), Gaps = 69/536 (12%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           LDLS +  L  L   S  F    LQ L+L+  +     I    +   + L+ L L+ +  
Sbjct: 33  LDLSFN-PLRHLGSYS-FFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPI 88

Query: 104 SGIVPSQISRLSKLVALDLS----SDIPRTKFEQHT--------FNNLAK--------NL 143
             +     S LS L  L       + +                  N +          NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 144 TELRYLLLDNVQMFSVVPSSLLNLSS--ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTL 201
           T L +L L + ++ S+  + L  L       +SL L    +        F    L +LTL
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 202 SDNGLLTGNLPTSNWS-SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPA 260
            +N      + T     + L +  L + +F         N  +L+  D           +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--------NEGNLEKFD----------KS 249

Query: 261 SLSNLKQLTVLNLEDNQ---FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQL 316
           +L  L  LT+          +  +  D+F  L+ ++  SL  +        S       L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
            L+     QF          L  +  K G            F+     +L  LDLS N L
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----------AFSEVDLPSLEFLDLSRNGL 359

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP--FILSSRIRFLSVSDNKLTGEFPSS 434
           +               +  L++LD+  N +  +   F+   ++  L    + L      S
Sbjct: 360 S----FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 435 I-CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVAL 492
           +  +L  + YL++S+               SL +L +  N F+ +    IF++  +L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
           +L+  +LE   P +  +   L+VL++ +N++          L  LQ + L +N + 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (406), Expect = 1e-41
 Identities = 105/539 (19%), Positives = 181/539 (33%), Gaps = 59/539 (10%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPRTK 130
           C + N  KI  N        +L+LSF+    +         +L  LDLS      I    
Sbjct: 14  CMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 131 FEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDI 190
           ++         +L+ L  L+L    + S+   +   LS  SL  L      L       I
Sbjct: 72  YQ---------SLSHLSTLILTGNPIQSLALGAFSGLS--SLQKLVAVETNLASLENFPI 120

Query: 191 FHFPFLRQLTLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKIPDTIGNLRDLKF--- 246
            H   L++L ++ N + +  LP    +   L  LDLS  K        +  L  +     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 247 -LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAHLNFTG 304
            LDL +   +   P +   ++ L  L L +N  S          L+ L    L    F  
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 305 Q-----LPLSAF-NLTQLSLLELSRNQ---FVGQLPCHASCLP-LSHLKLGGNFLDGRIP 354
           +        SA   L  L++ E        ++  +    +CL  +S   L    +     
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI----- 294

Query: 355 SWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP-FIL 413
             + + S +     L+L N K               +    L+ L   SN        + 
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 414 SSRIRFLSVSDNKLT--GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR 471
              + FL +S N L+  G    S    ++++YL+LS N +   +       + L  LD +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 472 KNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYW 530
            +  +      +F    +L+ L+++                 LEVL +  N   + F   
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 531 T-ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLK 588
               L  L  L L             P+       L++++++ N     +P   F  L 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (404), Expect = 1e-41
 Identities = 107/560 (19%), Positives = 189/560 (33%), Gaps = 70/560 (12%)

Query: 144 TELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLS 202
              + L L    +  +   S  +     L  L L  C ++       +     L  L L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 203 DNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF-DGQVPAS 261
            N + +  L   +  S L+ L    T  +      IG+L+ LK L++        ++P  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA---HLNFTGQLPLSAFNLTQLSL 318
            SNL  L  L+L  N+    +      L ++  ++L+    LN    +   AF   +L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 319 LELSRNQFVGQLPCHA----SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
           L L  N     +        + L +  L LG    +G +    F+ S  E L  L +   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK--FDKSALEGLCNLTIEEF 262

Query: 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP-FILSSRIRFLSVSDNKLTGEFPS 433
           +L    + LD           +    + S  ++R+  F  +   + L + + K   +FP+
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT 321

Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR--GSIPQIFSKCYDLVA 491
               L +++ L  ++N           +  SL  LDL +N     G   Q       L  
Sbjct: 322 --LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT-ATLPRLQVLVLRSNSFHGP 550
           L+L+ N +   +  +      LE LD  ++ +     +    +L  L  L +        
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQ 610
                  I      L ++ ++ N F        F  L+ +                    
Sbjct: 437 F----NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------- 472

Query: 611 YYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEI 670
                                 T +DLS  + E + P     LSSL++LN + N L+   
Sbjct: 473 ----------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 671 PVELTSLTALSVLNLSFNQL 690
                 LT+L  + L  N  
Sbjct: 511 DGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (382), Expect = 1e-38
 Identities = 92/530 (17%), Positives = 174/530 (32%), Gaps = 77/530 (14%)

Query: 201 LSDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV 258
             +        NLP S      + LDLS          +  +  +L+ LDL  C      
Sbjct: 14  CMELNFYKIPDNLPFS-----TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLS 317
             +  +L  L+ L L  N         F  LS L ++          L      +L  L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLK 127

Query: 318 LLELSRNQF-VGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSE----------- 364
            L ++ N     +LP + S L  L HL L  N +     + L  L               
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 365 -------------NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQS-NLLQRLP 410
                         L +L L NN  +  + +     +  +    L   + ++   L++  
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 411 FILSSRIRFLSVSDNKLTG------EFPSSICNLSTIEYLNLSNNSLSGMIP-QCLANFD 463
                 +  L++ + +L        +       L+ +   +L + ++  +        + 
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
            L L++ +  QF         K   L  L    N+       S  +   LE LD+  N +
Sbjct: 308 HLELVNCKFGQFP------TLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGL 359

Query: 524 N--DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPA 581
           +              L+ L L  N         + S      +L  +D   +    +   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 582 RYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNR 641
             F SL+ +++     +D+ + ++             +     +   L+    + ++ N 
Sbjct: 415 SVFLSLRNLIY-----LDISHTHT-------------RVAFNGIFNGLSSLEVLKMAGNS 456

Query: 642 FEGMIPKEV-GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           F+     ++  +L +L  L+ S   L    P    SL++L VLN++ NQL
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 45/244 (18%), Positives = 77/244 (31%), Gaps = 17/244 (6%)

Query: 47  LSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFS--YFS 104
                L+           L  L++L    N       + +      L  L+LS +   F 
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFK 362

Query: 105 GIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSL 164
           G         + L  LDLS +         T ++    L +L +L   +  +  +   S+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFN------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 165 LNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSP--LR 221
                 +LI L + +   R      IF     L  L ++ N     N     ++    L 
Sbjct: 417 FLSLR-NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLT 473

Query: 222 ILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE 281
            LDLS  +     P    +L  L+ L++               L  L  + L  N +   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 282 FPDV 285
            P +
Sbjct: 534 CPRI 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  164 bits (418), Expect = 3e-42
 Identities = 110/578 (19%), Positives = 192/578 (33%), Gaps = 97/578 (16%)

Query: 136 FNNLA---KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFH 192
           F NL    + L     LLL    + +V  SS   L    L  L LG+ +       + F 
Sbjct: 13  FCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQ--LQLLELGSQYTPLTIDKEAFR 70

Query: 193 -FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKI--PDTIGNLRDLKFLDL 249
             P LR L L  + +   +         L  L L     S  +       NL+ L  LDL
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 250 YVCYFDG-QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS--KLTRISLAHLNFTGQL 306
                    +  S   L  L  ++   NQ           L    L+  SLA  +   ++
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 307 P------LSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNL 360
                  ++ F    L +L++S N +   +               GNF +    S  F+L
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDIT--------------GNFSNAISKSQAFSL 236

Query: 361 STSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRI 417
             + +++      + +       DQ     ++   +RHLD+    +  L    F     +
Sbjct: 237 ILAHHIMGAGFGFHNIK----DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477
           + L+++ NK+      +   L  ++ LNLS N L  +          ++ +DL+KN    
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537
              Q F     L  L+L DN L      ++     +  + +  NK+              
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL----PKINLTA 403

Query: 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDD 597
            ++ L  N        ++       P L+I+ +++N F+     +      ++       
Sbjct: 404 NLIHLSENRLEN---LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL------- 453

Query: 598 IDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-----GK 652
                                                + L  N  +     E+       
Sbjct: 454 -----------------------------------EQLFLGENMLQLAWETELCWDVFEG 478

Query: 653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           LS L++L  +HN L    P   + LTAL  L+L+ N+L
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (414), Expect = 7e-42
 Identities = 108/585 (18%), Positives = 177/585 (30%), Gaps = 76/585 (12%)

Query: 58  PNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKL 117
             S+   L  LQ L L       T     F     L  L+L  S    + P     L  L
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99

Query: 118 VALDLSS------DIPRTKFEQHT--------FNNLAK--------NLTELRYLLLDNVQ 155
             L L         +    F             N +           L  L+ +   + Q
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 156 MFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDI------FHFPFLRQLTLSDNGLLTG 209
           +F V    L  L   +L   SL    L     +D       F    L  L +S NG    
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-- 217

Query: 210 NLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ-- 267
                     + I        S     ++     +                + + L +  
Sbjct: 218 ----------VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQF 326
           +  L+L           VF  L  L  ++LA+     ++   AF  L  L +L LS N  
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLL 326

Query: 327 VGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQ 385
                 +   LP ++++ L  N +          L     L  LDL +N LT  I  +  
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE---KLQTLDLRDNALT-TIHFIPS 382

Query: 386 WPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTG-EFPSSICNLSTIEYL 444
                     +  + +  N L  LP  ++     + +S+N+L   +    +  +  ++ L
Sbjct: 383 ----------IPDIFLSGNKLVTLPK-INLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 445 NLSNNSLSGMIPQCL-ANFDSLSLLDLRKNQFRGSI-----PQIFSKCYDLVALNLNDNE 498
            L+ N  S        +   SL  L L +N  + +        +F     L  L LN N 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 499 LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSI 558
           L    P   ++   L  L + +N++             L++L +  N    P        
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHND--LPANLEILDISRNQLLAP-------N 542

Query: 559 KRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM 603
              F  L ++DI+ N F        F +     +        D  
Sbjct: 543 PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIY 587

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  160 bits (407), Expect = 5e-41
 Identities = 116/640 (18%), Positives = 218/640 (34%), Gaps = 114/640 (17%)

Query: 77  DFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF 136
            +    ++           L LSF+Y   +  S    L +L  L+L S       ++  F
Sbjct: 10  FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 137 NNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF--HFP 194
               +NL  LR L L + +++ + P +   L    L  L L  C L      D +  +  
Sbjct: 70  ----RNLPNLRILDLGSSKIYFLHPDAFQGLFH--LFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 195 FLRQLTLSDNGLLTGNLPT--SNWSSPLRILDLSITKFSGKIPDTIGNLR--DLKFLDLY 250
            L +L LS N + +  L       +S L+ +D S  +        +  L+   L F  L 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 251 VCYFDGQVPASLSNLKQ------LTVLNLEDNQFSGEFPDVFGN-LSKLTRISLAHLNFT 303
                 +V               L +L++  N ++ +    F N +SK    SL   +  
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTS 363
                   N+      +  +N F G      +   + HL L   F+          L   
Sbjct: 243 MGAGFGFHNIK-----DPDQNTFAGL-----ARSSVRHLDLSHGFVFSLNSRVFETLK-- 290

Query: 364 ENLVELDLSNNKLT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRI 417
            +L  L+L+ NK+     + F              L+ L++  NLL  L    F    ++
Sbjct: 291 -DLKVLNLAYNKINKIADEAFY---------GLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477
            ++ +  N +      +   L  ++ L+L +N+L+      +    S+  + L  N+   
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT 395

Query: 478 SIPQIFSKCYDLVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKI----NDAFPYWTA 532
                 +       ++L++N LE   +   L     L++L +  N+      D  P    
Sbjct: 396 LPKINLTANL----IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-- 449

Query: 533 TLPRLQVLVLRSNSFHGPIYNNVP-SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM 591
             P L+ L L  N         +   +      L+++ ++ N    L P   F  L A+ 
Sbjct: 450 -NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTAL- 506

Query: 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG 651
                                                      + L++NR   ++     
Sbjct: 507 -----------------------------------------RGLSLNSNRLT-VLSHND- 523

Query: 652 KLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV 691
             ++L++L+ S N L            +LSVL+++ N+ +
Sbjct: 524 LPANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (402), Expect = 3e-40
 Identities = 91/495 (18%), Positives = 160/495 (32%), Gaps = 51/495 (10%)

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV-PASLSNLKQLTVLNLEDNQF 278
              L LS          +   L  L+ L+L   Y    +   +  NL  L +L+L  ++ 
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 279 SGEFPDVFGNLSKLTRISLAHLNFT-GQLPLSAF-NLTQLSLLELSRNQFVG-QLPCHAS 335
               PD F  L  L  + L     +   L    F NL  L+ L+LS+NQ     L     
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 336 CLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394
            L  L  +    N +   +          + L    L+ N L  ++       +    ++
Sbjct: 146 KLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
            L  LDV  N                    N ++     S+     I       +++   
Sbjct: 205 VLEILDVSGNGWTVDI---------TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 455 IPQCLANFDSLSL--LDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512
                A     S+  LDL          ++F    DL  LNL  N++      +     +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR 572
           L+VL++  N + + +      LP++  + L+ N     I        +   +L+ +D+  
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH----IAIIQDQTFKFLEKLQTLDLRD 371

Query: 573 NGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIF 632
           N  T +    +  S+  +    N  + L  +N                            
Sbjct: 372 NALTTI---HFIPSIPDIFLSGNKLVTLPKINLTA------------------------- 403

Query: 633 TTIDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRG-EIPVELTSLTALSVLNLSFNQL 690
             I LS NR E + I   + ++  L++L  + N           +   +L  L L  N L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 691 VGPIPQGKQFDSFQN 705
                    +D F+ 
Sbjct: 464 QLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (382), Expect = 8e-38
 Identities = 95/521 (18%), Positives = 166/521 (31%), Gaps = 79/521 (15%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           L L    L   +  +     L  L +L+L+ N      +  +FG+   L  ++ S +   
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 105 GIVPSQISRLS--KLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPS 162
            +   ++  L    L    L++             +  K +   R ++L           
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAA----NSLYSRVSVDWGKCMNPFRNMVL----------- 206

Query: 163 SLLNLSSASLISLSLGNCF--LRGEFPIDIFHFPFLRQLTLSDNGL--LTGNLPTSNWSS 218
            +L++S         GN    +       +     +       + +     N       S
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQF 278
            +R LDLS              L+DLK L+L     +     +   L  L VLNL  N  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 279 SGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCL 337
              +   F  L K+  I L   +    +    F  L +L  L+L  N             
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNA------------ 373

Query: 338 PLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELR 397
                              L  +    ++ ++ LS NKL   + +++         +   
Sbjct: 374 -------------------LTTIHFIPSIPDIFLSGNKLV-TLPKIN---------LTAN 404

Query: 398 HLDVQSNLLQRLP----FILSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLS 452
            + +  N L+ L      +    ++ L ++ N+ +            ++E L L  N L 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 453 GMIPQCL-----ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL 507
                 L          L +L L  N      P +FS    L  L+LN N L   L  + 
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN- 522

Query: 508 ANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
               +LE+LD+  N++    P        L VL +  N F 
Sbjct: 523 DLPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (274), Expect = 1e-24
 Identities = 81/468 (17%), Positives = 148/468 (31%), Gaps = 133/468 (28%)

Query: 236 DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295
              G +   +F +L       QVP     L     L L  N         F  L +L  +
Sbjct: 3   SFDGRIAFYRFCNLT------QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53

Query: 296 SLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIP 354
            L        +   AF NL  L +L+L  ++             +  L           P
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-------------IYFLH----------P 90

Query: 355 SWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---- 410
                L    +L EL L    L+  + +   +     +   L  LD+  N ++ L     
Sbjct: 91  DAFQGLF---HLFELRLYFCGLSDAVLKDGYFR----NLKALTRLDLSKNQIRSLYLHPS 143

Query: 411 FILSSRIRFLSVSDNKLTGEFPSSICNLS--TIEYLNLSNNSLSGMIP----QCLANFDS 464
           F   + ++ +  S N++       +  L   T+ + +L+ NSL   +     +C+  F +
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 465 LSL--LDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNK 522
           + L  LD+  N +   I   FS            N +      SL     +     G + 
Sbjct: 204 MVLEILDVSGNGWTVDITGNFS------------NAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 523 INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPAR 582
           I D                   N+F G   ++          +R +D+S      L  +R
Sbjct: 252 IKD----------------PDQNTFAGLARSS----------VRHLDLSHGFVFSL-NSR 284

Query: 583 YFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRF 642
            F++LK +                                            ++L+ N+ 
Sbjct: 285 VFETLKDL------------------------------------------KVLNLAYNKI 302

Query: 643 EGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
             +  +    L +L++LN S+N+L          L  ++ ++L  N +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 5e-14
 Identities = 60/303 (19%), Positives = 98/303 (32%), Gaps = 24/303 (7%)

Query: 58  PNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSK 116
            +   + L +LQ LNL+ N     ++ S+ F    K+ +++L  ++ + I       L K
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLL--GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 117 LVALDLS----SDIPRTKFEQHTF------NNLAKNLTELRYLLLDNVQMFSV-VPSSLL 165
           L  LDL     + I         F        L K       + L   ++ ++ +   LL
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 166 NLSSASLISLSLGNCFLRGEFPIDIFH-FPFLRQLTLSDNGLLTGNLPTSNWSSP----- 219
            +    L  L L                 P L QL L +N L         W        
Sbjct: 424 RVPH--LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS 279
           L++L L+    +   P    +L  L+ L L        V +       L +L++  NQ  
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLL 539

Query: 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPL 339
              PDVF +LS L       +          +       +           P   S + L
Sbjct: 540 APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSL 599

Query: 340 SHL 342
             L
Sbjct: 600 FSL 602

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  153 bits (390), Expect = 2e-40
 Identities = 103/514 (20%), Positives = 177/514 (34%), Gaps = 100/514 (19%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
              LQ+     ++   T++          T    ++S +    P       ++    L  
Sbjct: 10  NTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR- 66

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
                       + L +   EL    L+N+   S +P    +L S     L      L  
Sbjct: 67  ------------DCLDRQAHELE---LNNLG-LSSLPELPPHLES-----LVASCNSLT- 104

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDL 244
           E P        L     +   L   +LP       L  L +S  +   K+P+ + N   L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKAL--SDLPPL-----LEYLGVSNNQLE-KLPE-LQNSSFL 155

Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
           K +D+       ++P    +L     +   +NQ   E P+   NL  LT I   + +   
Sbjct: 156 KIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK- 208

Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLST-- 362
           +LP    +L  +       N    +LP   +   L+ +    N L   +P    +L    
Sbjct: 209 KLPDLPLSLESIVA---GNNILE-ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALN 263

Query: 363 ------------SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP 410
                        ++L  LD+S N  +     L + P        L +L+  SN ++ L 
Sbjct: 264 VRDNYLTDLPELPQSLTFLDVSENIFS----GLSELPPN------LYYLNASSNEIRSLC 313

Query: 411 FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDL 470
            +  S +  L+VS+NKL  E P+    L   E L  S N L+  +P+   N   L  L +
Sbjct: 314 DLPPS-LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN---LKQLHV 364

Query: 471 RKNQFRGSIPQIFSKCYDLVA----------------LNLNDNELEGKLPPSLANCGDLE 514
             N  R   P I     DL                  L++  N L  + P    +   +E
Sbjct: 365 EYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VE 419

Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
            L + + ++ D + +   T  +L+  V   +  H
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (323), Expect = 1e-31
 Identities = 90/484 (18%), Positives = 166/484 (34%), Gaps = 86/484 (17%)

Query: 106 IVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLL 165
           I P  +S       L  SS++             A+N+           +     P    
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL-------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG 55

Query: 166 NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDL 225
                ++  L   +C  R              +L L++ GL +  LP       L  L  
Sbjct: 56  EQREMAVSRLR--DCLDRQ-----------AHELELNNLGLSS--LPEL--PPHLESLVA 98

Query: 226 SITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDV 285
           S    + ++P+   +L+ L   +  +                L  L + +NQ   + P+ 
Sbjct: 99  SCNSLT-ELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLE-KLPE- 148

Query: 286 FGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLG 345
             N S L  I + + +   +LP        L  +    NQ   +LP   +   L+ +   
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYAD 203

Query: 346 GNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNL 405
            N L  ++P    +L        +   NN L  ++ +L   P        L  +   +NL
Sbjct: 204 NNSLK-KLPDLPLSLE------SIVAGNNILE-ELPELQNLP-------FLTTIYADNNL 248

Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
           L+ LP +  S +  L+V DN LT + P    +L+ ++      + LS + P       +L
Sbjct: 249 LKTLPDLPPS-LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NL 299

Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525
             L+   N+ R S+  +      L  LN+++N+L  +LP        LE L    N + +
Sbjct: 300 YYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE 351

Query: 526 AFPYWTATLPRLQVLVLRSNSF-----------HGPIYNNVPSIKRPFPELRIIDISRNG 574
             P        L+ L +  N                + +++  +      L+ + +  N 
Sbjct: 352 -VP---ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 575 FTGL 578
               
Sbjct: 408 LREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (309), Expect = 8e-30
 Identities = 86/435 (19%), Positives = 151/435 (34%), Gaps = 91/435 (20%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
           ++P    N+K  T      +++    P   G   ++               L      Q 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA-----------VSRLRDCLDRQA 73

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
             LEL+       LP       L  L    N L   +P    +L   ++L+  + +   L
Sbjct: 74  HELELNNLGLS-SLP--ELPPHLESLVASCNSLT-ELPELPQSL---KSLLVDNNNLKAL 126

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSI 435
           +                  L +L V +N L++LP + + S ++ + V +N L  + P   
Sbjct: 127 SDLP-------------PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
            +L   E++   NN L   +P+ L N   L+ +    N  +       S    L ++   
Sbjct: 173 PSL---EFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAG 223

Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNV 555
           +N LE    P L N   L  +   NN +    P      P L+ L +R N        ++
Sbjct: 224 NNILE--ELPELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYL-----TDL 272

Query: 556 PSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI 615
           P +      L  +D+S N F+GL  +    +L  +    N+   L               
Sbjct: 273 PEL---PQSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIRSLC-------------- 313

Query: 616 LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELT 675
                       +      +++SNN+    +P        L+ L  S N L  E+P    
Sbjct: 314 -----------DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPELPQ 357

Query: 676 SLTALSVLNLSFNQL 690
           +L     L++ +N L
Sbjct: 358 NLK---QLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (309), Expect = 8e-30
 Identities = 82/472 (17%), Positives = 152/472 (32%), Gaps = 102/472 (21%)

Query: 233 KIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNL-------------KQLTVLNLEDNQFS 279
           ++P    N++           ++   P                   +Q   L L +   S
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPL 339
              P++  +L  L     +  + T +LP    +L  L +   +        P       L
Sbjct: 85  -SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL------L 133

Query: 340 SHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHL 399
            +L +  N L+ ++P  L N S    L  +D+ NN L                   L  +
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSS---FLKIIDVDNNSLKKLPDLPPS----------LEFI 178

Query: 400 DVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
              +N L+ LP + +   +  +   +N L  + P    +L   E +   NN L   +P+ 
Sbjct: 179 AAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE-ELPE- 232

Query: 459 LANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDV 518
           L N   L+ +    N  + ++P +      L ALN+ DN L   LP    +   L+V + 
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSEN 287

Query: 519 GNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL 578
             + +       +   P L  L   SN           S+    P L  +++S N    L
Sbjct: 288 IFSGL-------SELPPNLYYLNASSNEIR--------SLCDLPPSLEELNVSNNKLIEL 332

Query: 579 LPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLS 638
                   L+ ++   N   ++  +            L                  + + 
Sbjct: 333 PAL--PPRLERLIASFNHLAEVPELPQN---------LKQ----------------LHVE 365

Query: 639 NNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
            N      P     +  L++ +        E+P    +L     L++  N L
Sbjct: 366 YNPLRE-FPDIPESVEDLRMNS-----HLAEVPELPQNLK---QLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 3e-29
 Identities = 83/508 (16%), Positives = 159/508 (31%), Gaps = 79/508 (15%)

Query: 195 FLRQLTLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
           FL++     + L    +P    +         + +++    P   G  R++    L  C 
Sbjct: 12  FLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 254 FDGQVPASLSN---------LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
                   L+N            L  L    N  + E P++  +L  L   +      + 
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 128

Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
             P        L  L +S NQ   +LP   +   L  + +  N L  ++P          
Sbjct: 129 LPP-------LLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK-KLPDLP------P 173

Query: 365 NLVELDLSNNKLTG--QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSV 422
           +L  +   NN+L    ++  L            L  +   +N L++LP +  S +  +  
Sbjct: 174 SLEFIAAGNNQLEELPELQNL----------PFLTAIYADNNSLKKLPDLPLS-LESIVA 222

Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI 482
            +N L       + NL  +  +   NN L   +P    +   L  L++R N     +P++
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPEL 275

Query: 483 FSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVL 542
                 L       + L  +LPP+L        L+  +N+I           P L+ L +
Sbjct: 276 PQSLTFLDVSENIFSGLS-ELPPNL------YYLNASSNEIRS----LCDLPPSLEELNV 324

Query: 543 RSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602
            +N            +    P L  +  S N    +      Q+LK +    N   +   
Sbjct: 325 SNNKLI--------ELPALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPD 374

Query: 603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFS 662
           +  +  D   +  L       E+  +      + +  N      P       S++ L  +
Sbjct: 375 IPESVEDLRMNSHLA------EVPELPQNLKQLHVETNPLR-EFPDI---PESVEDLRMN 424

Query: 663 HNILRGEIPVELTSLTALSVLNLSFNQL 690
              +         +   L       +  
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 3e-26
 Identities = 90/432 (20%), Positives = 149/432 (34%), Gaps = 107/432 (24%)

Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSL 318
           P ++SN   L       +  + E P    N+   T    A   +    P       ++++
Sbjct: 5   PRNVSNT-FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 319 LELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378
             L                    L+L    L   +P    +L        L  S N LT 
Sbjct: 63  SRLRDC----------LDRQAHELELNNLGLS-SLPELPPHLE------SLVASCNSLT- 104

Query: 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNL 438
              +L + P        L+ L V +N L+ L  +    + +L VS+N+L  + P  + N 
Sbjct: 105 ---ELPELPQS------LKSLLVDNNNLKALSDLPPL-LEYLGVSNNQLE-KLPE-LQNS 152

Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
           S ++ +++ NNSL   +P    +   L  +    NQ    +P+       L A+  ++N 
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNS 206

Query: 499 LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSI 558
           L+ KLP    +   LE +  GNN + +  P     LP L  +   +N           ++
Sbjct: 207 LK-KLPDLPLS---LESIVAGNNILEE-LPEL-QNLPFLTTIYADNNLLK--------TL 252

Query: 559 KRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTY 618
               P L  +++  N  T L      QSL                               
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPEL--PQSL------------------------------- 279

Query: 619 KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT 678
                         T +D+S N F G + +      +L  LN S N +R  +     SL 
Sbjct: 280 --------------TFLDVSENIFSG-LSEL---PPNLYYLNASSNEIR-SLCDLPPSLE 320

Query: 679 ALSVLNLSFNQL 690
               LN+S N+L
Sbjct: 321 ---ELNVSNNKL 329

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (391), Expect = 2e-40
 Identities = 94/501 (18%), Positives = 178/501 (35%), Gaps = 91/501 (18%)

Query: 192 HFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYV 251
                 +  L    + T  +  ++    +  L            D +  L +L  ++   
Sbjct: 22  ALAEKMKTVLGKTNV-TDTVSQTDLDQ-VTTLQADRLGIK--SIDGVEYLNNLTQINFSN 77

Query: 252 CYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF 311
                  P  L NL +L  + + +NQ +   P    NL+ LT ++L +   T   PL   
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK-- 131

Query: 312 NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDL 371
           NLT L+ LELS N  +  +   +    L  L  G    D      L  L+    L  LD+
Sbjct: 132 NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTD------LKPLANLTTLERLDI 184

Query: 372 SNNKLTGQIFQLDQWPVERISS-VELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTG 429
           S+NK++          +  ++    L  L   +N +  +  +   + +  LS++ N+L  
Sbjct: 185 SSNKVSD---------ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235

Query: 430 EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL 489
               ++ +L+ +  L+L+NN +S + P  L+    L+ L L  NQ     P   +    L
Sbjct: 236 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289

Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549
             L LN+N+LE      ++N  +L  L +  N I+D  P   ++L +LQ L   +N    
Sbjct: 290 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKV-- 343

Query: 550 PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD 609
              ++V S+      +  +    N  + L P      +                      
Sbjct: 344 ---SDVSSLAN-LTNINWLSAGHNQISDLTPLANLTRI---------------------- 377

Query: 610 QYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE 669
                                  T + L++  +          +S    +      L   
Sbjct: 378 -----------------------TQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--I 412

Query: 670 IPVELTSLTALSVLNLSFNQL 690
            P  ++   + +  ++++N  
Sbjct: 413 APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (382), Expect = 3e-39
 Identities = 105/518 (20%), Positives = 191/518 (36%), Gaps = 89/518 (17%)

Query: 41  HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSF 100
             +   L  + +  T     +   L  +  L           I         LT +N S 
Sbjct: 25  EKMKTVLGKTNVTDT----VSQTDLDQVTTLQADRL--GIKSID-GVEYLNNLTQINFSN 77

Query: 101 SYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLA-----KNLTELRYLLLDNVQ 155
           +  + I P  +  L+KLV + ++             N +A      NLT L  L L N Q
Sbjct: 78  NQLTDITP--LKNLTKLVDILMN------------NNQIADITPLANLTNLTGLTLFNNQ 123

Query: 156 MFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN 215
           +  + P   L     +L  L L +  +       +     L+QL+  +   +T   P +N
Sbjct: 124 ITDIDPLKNLT----NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--VTDLKPLAN 175

Query: 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED 275
            ++ L  LD+S  K S      +  L +L+ L           P  L  L  L  L+L  
Sbjct: 176 LTT-LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230

Query: 276 NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS 335
           NQ          +L+ LT + LA+   +   PLS   LT+L+ L+L  NQ          
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN------- 279

Query: 336 CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVE 395
                                +  L+    L  L+L+ N+L          P+  + +  
Sbjct: 280 ---------------------ISPLAGLTALTNLELNENQLEDIS------PISNLKN-- 310

Query: 396 LRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
           L +L +  N +  +  + S ++++ L   +NK++    SS+ NL+ I +L+  +N +S +
Sbjct: 311 LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS-LANCGDL 513
            P  LAN   ++ L L    +  +     +    +   N   N     + P+ +++ G  
Sbjct: 369 TP--LANLTRITQLGLNDQAWTNAPVNYKAN---VSIPNTVKNVTGALIAPATISDGGSY 423

Query: 514 EVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551
              D+  N  +      + T  +   +   + +F G +
Sbjct: 424 TEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (371), Expect = 9e-38
 Identities = 90/460 (19%), Positives = 160/460 (34%), Gaps = 87/460 (18%)

Query: 237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRIS 296
           T   L +     L        V    ++L Q+T L  +         D    L+ LT+I+
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 297 LAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSW 356
            ++   T   PL   NLT+L  + ++ NQ    +   A+   L+ L L  N +       
Sbjct: 75  FSNNQLTDITPLK--NLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITD----- 126

Query: 357 LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS-VELRHLDVQSNLLQRLPFILSS 415
           +  L    NL  L+LS+N ++          +  +S    L+ L   + +    P    +
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD---------ISALSGLTSLQQLSFGNQVTDLKPLANLT 177

Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
            +  L +S NK++    S +  L+ +E L  +NN +S + P  L    +L  L L  NQ 
Sbjct: 178 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
           +       +   +L  L+L +N++       L+    L  L +G N+I++  P   A L 
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLT 287

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDN 595
            L  L L  N        ++  I      L  + +  N  + + P      L        
Sbjct: 288 ALTNLELNENQL-----EDISPISN-LKNLTYLTLYFNNISDISPVSSLTKL-------- 333

Query: 596 DDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655
                                                  +   NN+        +  L++
Sbjct: 334 -------------------------------------QRLFFYNNKVSD--VSSLANLTN 354

Query: 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP 695
           +  L+  HN +    P  L +LT ++ L L+         
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (319), Expect = 4e-31
 Identities = 80/424 (18%), Positives = 159/424 (37%), Gaps = 85/424 (20%)

Query: 273 LEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPC 332
            +D   +  F D    L++  +  L   N T  +  +  +L Q++ L+  R         
Sbjct: 9   TQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG------- 57

Query: 333 HASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERIS 392
                 +  +                 +    NL +++ SNN+LT         P++ ++
Sbjct: 58  ------IKSID---------------GVEYLNNLTQINFSNNQLTDIT------PLKNLT 90

Query: 393 SVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
              L  + + +N +  +  + + + +  L++ +N++T      + NL+ +  L LS+N++
Sbjct: 91  K--LVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI 146

Query: 452 SGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511
           S +    L+   SL  L    NQ     P   +    L  L+++ N++       LA   
Sbjct: 147 SDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 199

Query: 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
           +LE L   NN+I+D  P     L  L  L L  N        ++ ++      L  +D++
Sbjct: 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLAS-LTNLTDLDLA 251

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
            N  + L P      L         ++ L               ++    ++     L  
Sbjct: 252 NNQISNLAPLSGLTKLT--------ELKLGANQ-----------IS----NISPLAGLTA 288

Query: 632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV 691
            T ++L+ N+ E + P  +  L +L  L    N +    P  ++SLT L  L    N++ 
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

Query: 692 GPIP 695
               
Sbjct: 345 DVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 59/331 (17%), Positives = 115/331 (34%), Gaps = 52/331 (15%)

Query: 366 LVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSD 424
           L    ++ +    QIF             E     +    +          ++  L    
Sbjct: 3   LGSATITQDTPINQIFTDTALA-------EKMKTVLGKTNVTDTVSQTDLDQVTTLQADR 55

Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS 484
             +       +  L+ +  +N SNN L+ + P  L N   L  + +  NQ     P   +
Sbjct: 56  LGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA 109

Query: 485 KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRS 544
              +L  L L +N++       L N  +L  L++ +N I+D      + L  LQ L   +
Sbjct: 110 NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFGN 165

Query: 545 NSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN 604
                    ++  +      L  +DIS N  + +       +L++++  +N   D+  + 
Sbjct: 166 QV------TDLKPLAN-LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 218

Query: 605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHN 664
                                   L     + L+ N+ +      +  L++L  L+ ++N
Sbjct: 219 I-----------------------LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 253

Query: 665 ILRGEIPVELTSLTALSVLNLSFNQLVGPIP 695
            +    P  L+ LT L+ L L  NQ+    P
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 52/279 (18%), Positives = 94/279 (33%), Gaps = 66/279 (23%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
             +    +T     S  +L  +  L      +  +    +   ++L+ ++   NQ     
Sbjct: 29  TVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT 84

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
           P        LV + +N+N++       LAN  +L  L + NN+I D  P     L  L  
Sbjct: 85  P--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138

Query: 540 LVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599
           L L SN+      +++ ++      L+ +    N  T L P     +L            
Sbjct: 139 LELSSNTI-----SDISALSG-LTSLQQLSFG-NQVTDLKPLANLTTL------------ 179

Query: 600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLL 659
                                              +D+S+N+        + KL++L+ L
Sbjct: 180 ---------------------------------ERLDISSNKVSD--ISVLAKLTNLESL 204

Query: 660 NFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK 698
             ++N +    P  L  LT L  L+L+ NQL        
Sbjct: 205 IATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS 241

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 9e-06
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 35/179 (19%)

Query: 520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLL 579
           +  IN  F      L      VL   +    +       +    ++  +   R G   + 
Sbjct: 11  DTPINQIFT--DTALAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKSID 62

Query: 580 PARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSN 639
              Y  +L          I+                LT    D+   + L     I ++N
Sbjct: 63  GVEYLNNLT--------QINFSNNQ-----------LT----DITPLKNLTKLVDILMNN 99

Query: 640 NRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK 698
           N+   + P  +  L++L  L   +N +    P  L +LT L+ L LS N +        
Sbjct: 100 NQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (382), Expect = 1e-38
 Identities = 105/525 (20%), Positives = 191/525 (36%), Gaps = 90/525 (17%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           L L SS  + T+  ++   L   L+ L+L+ N    + +SS+ FG  + L +LNL  + +
Sbjct: 55  LILKSS-RINTIEGDAFYSL-GSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 104 SGI-VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPS 162
             + V S    L+ L  L + +    ++  +  F      LT L  L +  + + +    
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF----AGLTSLNELEIKALSLRNYQSQ 166

Query: 163 SLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT---GNLPTSNWSSP 219
           SL ++    +  L+L          I       +R L L D  L       LP    SSP
Sbjct: 167 SLKSIRD--IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 220 LRILDLSITKFSG-------KIPDTIGNLRDLKFLDL---YVCYFDGQVPASLSNLK--- 266
           ++ L    +  +        K+   I  L +++F D     +  F+      +S L    
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 267 --QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSR 323
              +  L++       +   V+  L K+ RI++ +      +P S   +L  L  L+LS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 324 NQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQL 383
           N  V +   +++C                            +L  L LS N L       
Sbjct: 344 NLMVEEYLKNSACK-----------------------GAWPSLQTLVLSQNHLR------ 374

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443
                          +     +L  L       +  L +S N      P S      + +
Sbjct: 375 --------------SMQKTGEILLTLK-----NLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 444 LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503
           LNLS+  +  ++  C+    +L +LD+  N    S      +   L  L ++ N+L+  L
Sbjct: 415 LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TL 466

Query: 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
           P + +    L V+ +  N++          L  LQ + L +N + 
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (375), Expect = 7e-38
 Identities = 94/518 (18%), Positives = 177/518 (34%), Gaps = 56/518 (10%)

Query: 90  FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTE 145
              +  L+LSF+  + I    +   + L  L L     + I    F          +L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY---------SLGS 75

Query: 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDN 204
           L +L L +  + S+  S    LS  SL  L+L     +      +F +   L+ L + + 
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLS--SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 205 GLLTGNLPTSNWSSP-LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS 263
              +            L  L++           ++ ++RD+  L L++      +     
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSR 323
            L  +  L L D   +             + +                      L + S 
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK-------------LAFRGSVLTDESF 240

Query: 324 NQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG-QIFQ 382
           N+ +  L        +       N L    PS    +S    +  + +    +    +F 
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 383 LDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEF---PSSIC 436
                   +    ++ + V+++ +  +P         + FL +S+N +  E+    +   
Sbjct: 301 DLSTVYSLLEK--VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 437 NLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
              +++ L LS N L  M    + L    +L+ LD+ +N F   +P        +  LNL
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           +   +   +   +     LEVLDV NN ++    +    LPRLQ L +  N         
Sbjct: 418 SSTGIR-VVKTCIPQ--TLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLK-----T 465

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH 592
           +P     FP L ++ ISRN     +P   F  L ++  
Sbjct: 466 LPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQK 501

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (365), Expect = 1e-36
 Identities = 98/547 (17%), Positives = 187/547 (34%), Gaps = 89/547 (16%)

Query: 143 LTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHF-PFLRQLTL 201
              ++ L L   ++  +    L   ++  L  L L +  +      D F+    L  L L
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACAN--LQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81

Query: 202 SDNGLLTGNLPTSNWSSP--LRILDLSITKFSG-KIPDTIGNLRDLKFLDLYVCYFDGQV 258
           SDN L   +L +S +     L+ L+L    +    +     NL +L+ L +       ++
Sbjct: 82  SDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 259 PA-SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS 317
                + L  L  L ++             ++  +  ++L        L + A  L+ + 
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 318 LLELSRNQ----FVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNL-STSENLVELDLS 372
            LEL            LP      P+  L   G+ L     + L  L      L E++  
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 373 NNKLTGQIFQLDQWPVERIS------SVELRHLDVQSNLLQRLP---FILSSRIRFLSVS 423
           +  L G +   +    + +S      +V +R L +    L       + L  +++ ++V 
Sbjct: 260 DCTLNG-LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 424 DNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMI---PQCLANFDSLSLLDLRKNQFR--G 477
           ++K+    P S   +L ++E+L+LS N +         C   + SL  L L +N  R   
Sbjct: 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537
              +I     +L +L+++ N     +P S      +  L++ +  I             L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC---IPQTL 433

Query: 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDD 597
           +VL + +N+          S     P L+ + ISRN    L  A  F  L          
Sbjct: 434 EVLDVSNNNL--------DSFSLFLPRLQELYISRNKLKTLPDASLFPVLL--------- 476

Query: 598 IDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLK 657
                                                + +S N+ + +      +L+SL+
Sbjct: 477 ------------------------------------VMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 658 LLNFSHN 664
            +    N
Sbjct: 501 KIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 1e-35
 Identities = 100/556 (17%), Positives = 180/556 (32%), Gaps = 83/556 (14%)

Query: 157 FSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNW 216
           F+ +PS L    +A++ SL L    +      D+     L+ L L  + + T        
Sbjct: 17  FTSIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72

Query: 217 SSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG-QVPASLSNLKQLTVLNLED 275
              L  LDLS    S       G L  LK+L+L    +    V +   NL  L  L + +
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 276 -NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCH 333
              FS      F  L+ L  + +  L+        +  ++  +  L L  ++    L   
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 334 ASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIF----------- 381
           A  L  + +L+L    L     S L     S  + +L    + LT + F           
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 382 QLDQWPVERISSVELRHLD-VQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST 440
           +L +   +  +   L   +  +S+++  L  + +  IR L +    L  +  +    L  
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI---PQIFSKCYDLVALNLNDN 497
           ++ + + N+ +  +      +  SL  LDL +N                  L  L L+ N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 498 ELE--GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNV 555
            L    K    L    +L  LD+  N  +   P       +++ L L S          V
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-----VV 425

Query: 556 PSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI 615
            +       L ++D+S N       + +   L+                           
Sbjct: 426 KT--CIPQTLEVLDVSNNNLDSF--SLFLPRLQ--------------------------- 454

Query: 616 LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELT 675
                              + +S N+ +  +P        L ++  S N L+        
Sbjct: 455 ------------------ELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFD 494

Query: 676 SLTALSVLNLSFNQLV 691
            LT+L  + L  N   
Sbjct: 495 RLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (342), Expect = 1e-33
 Identities = 86/518 (16%), Positives = 176/518 (33%), Gaps = 94/518 (18%)

Query: 201 LSDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV 258
                  +    L  +     ++ LDLS  K +      +    +L+ L L     +   
Sbjct: 12  GRSRSFTSIPSGLTAA-----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLS 317
             +  +L  L  L+L DN  S      FG LS L  ++L    +      S F NLT L 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 318 LLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
            L +   +   ++     + L  L+ L++    L       L ++    ++  L L  ++
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR---DIHHLTLHLSE 183

Query: 376 LTGQIFQLDQWPVERISSVELRHLDVQSN---------LLQRLPFILSSRIRFLSVSDNK 426
               + ++    +  +  +ELR  ++            +   +  +          S N+
Sbjct: 184 SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 427 LTGEFPSSICNLSTIEYLNLSNNSLSGM------IPQCLANFDSLSL--LDLRKNQFRGS 478
           L  +    I  LS +E+ + + N L         +   L   +++++  L + +      
Sbjct: 243 LL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 479 IPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTA---TLP 535
           +  ++S    +  + + ++++         +   LE LD+  N + + +   +A     P
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPF---PELRIIDISRNGFTGLLPARYFQSLKAMMH 592
            LQ LVL  N        ++            L  +DISRN F  +  +   Q  + M  
Sbjct: 362 SLQTLVLSQNHLR-----SMQKTGEILLTLKNLTSLDISRNTFHPMPDS--CQWPEKM-- 412

Query: 593 GDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK 652
                                                     ++LS+     ++   +  
Sbjct: 413 ----------------------------------------RFLNLSSTGIR-VVKTCI-- 429

Query: 653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
             +L++L+ S+N L     + L  L     L +S N+L
Sbjct: 430 PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 1e-29
 Identities = 83/482 (17%), Positives = 164/482 (34%), Gaps = 73/482 (15%)

Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
               + D     F+  IP  +     +K LDL            L     L VL L+ ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 278 FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHA-S 335
            +    D F +L  L  + L+  + +  L  S F  L+ L  L L  N +          
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 336 CLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394
            L  L  L++G       I    F  +   +L EL++    L                  
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLR----------------- 161

Query: 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
                + QS  L+ +       I  L++  ++           LS++ YL L + +L+  
Sbjct: 162 -----NYQSQSLKSIR-----DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
               L   +  S +     +      + F++   L+   L  +E+         +C    
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNG 265

Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG-PIYNNVPSIKRPFPELRIIDISRN 573
           + D   ++ +       + L +++ + +R        ++ ++ ++     +++ I +  +
Sbjct: 266 LGDFNPSESD-----VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 574 GFTGLLPARYFQSLKAMMH---GDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLN 630
               L+P  + Q LK++      +N  ++    NSA    + S+                
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL---------------- 363

Query: 631 IFTTIDLSNNRFEGM--IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
              T+ LS N    M    + +  L +L  L+ S N     +P        +  LNLS  
Sbjct: 364 --QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 689 QL 690
            +
Sbjct: 421 GI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (260), Expect = 2e-23
 Identities = 62/383 (16%), Positives = 125/383 (32%), Gaps = 30/383 (7%)

Query: 335 SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394
           SC                IPS L        +  LDLS NK+T     +    +   ++ 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLT-----AAMKSLDLSFNKIT----YIGHGDLRACAN- 51

Query: 395 ELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
            L+ L ++S+ +  +    F     +  L +SDN L+    S    LS+++YLNL  N  
Sbjct: 52  -LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 452 SGM-IPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEGKLPPSLAN 509
             + +     N  +L  L +   +    I    F+    L  L +    L      SL +
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 510 CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID 569
             D+  L +  ++       +   L  ++ L LR  +       +   +      ++ + 
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLA 229

Query: 570 ISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL 629
              +  T        + L+ ++     + D   +N  G        +  +   +E     
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE----T 285

Query: 630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ 689
                + +        +      L  +K +   ++ +          L +L  L+LS N 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 690 LVGPIPQGKQFDSFQNDSFIGNL 712
           +          +  +N +  G  
Sbjct: 346 M--------VEEYLKNSACKGAW 360

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 2e-37
 Identities = 69/367 (18%), Positives = 143/367 (38%), Gaps = 42/367 (11%)

Query: 162 SSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT----GNLPTSNWS 217
               +L+    I   L    +     +       + +L ++   + +      L      
Sbjct: 16  FPDADLAE--GIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQGIEYLTN---- 67

Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
             L  L+L+  + +   P  + NL  L  L +          ++L NL  L  L L ++ 
Sbjct: 68  --LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDN 121

Query: 278 FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCL 337
            S        NL+K+  ++L   N          N+T L+ L ++ ++ V  +   A+  
Sbjct: 122 ISD--ISPLANLTKMYSLNLGA-NHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLT 177

Query: 338 PLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELR 397
            L  L L  N ++      +  L++  +L       N++T         PV  ++   L 
Sbjct: 178 DLYSLSLNYNQIED-----ISPLASLTSLHYFTAYVNQITDIT------PVANMTR--LN 224

Query: 398 HLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP 456
            L + +N +  L  + + S++ +L +  N+++    +++ +L+ ++ LN+ +N +S +  
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV 282

Query: 457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL 516
             L N   L+ L L  NQ      ++     +L  L L+ N +       LA+   ++  
Sbjct: 283 --LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSA 338

Query: 517 DVGNNKI 523
           D  N  I
Sbjct: 339 DFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 2e-37
 Identities = 76/376 (20%), Positives = 153/376 (40%), Gaps = 36/376 (9%)

Query: 172 LISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFS 231
             +L+     +   FP          +  L    +   ++ T      +  L ++  K +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVA 57

Query: 232 GKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSK 291
             I   I  L +L++L+L         P  LSNL +LT L +  N+ +        NL+ 
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 292 LTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG 351
           L  + L   N +   PL+  NLT++  L L  N  +  L   ++   L++L +  + +  
Sbjct: 112 LRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-- 167

Query: 352 RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS-VELRHLDVQSNLLQRLP 410
                +  ++   +L  L L+ N++           +  ++S   L +     N +  + 
Sbjct: 168 ---KDVTPIANLTDLYSLSLNYNQIED---------ISPLASLTSLHYFTAYVNQITDIT 215

Query: 411 FILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLD 469
            + + +R+  L + +NK+T    S + NLS + +L +  N +S +    + +   L +L+
Sbjct: 216 PVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLN 271

Query: 470 LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPY 529
           +  NQ   S   + +    L +L LN+N+L  +    +    +L  L +  N I D  P 
Sbjct: 272 VGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328

Query: 530 WTATLPRLQVLVLRSN 545
             A+L ++      + 
Sbjct: 329 -LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (352), Expect = 3e-36
 Identities = 78/425 (18%), Positives = 156/425 (36%), Gaps = 83/425 (19%)

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
              L       +  FPD   +L++  R  L   + T  +      L  ++ L ++  + V
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEK-V 56

Query: 328 GQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWP 387
             +        L +L L GN +    P  L NL     L  L +  NK+T          
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLV---KLTNLYIGTNKITD--------- 102

Query: 388 VERISS-VELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLN 445
           +  + +   LR L +  + +  +  + + +++  L++  N    +  S + N++ + YL 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLT 161

Query: 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP 505
           ++ + +  + P  +AN   L  L L  NQ     P   +    L       N++      
Sbjct: 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--IT 215

Query: 506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL 565
            +AN   L  L +GNNKI D  P   A L +L  L + +N       +++ ++K    +L
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI-----SDINAVKD-LTKL 267

Query: 566 RIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEM 625
           +++++  N  + +       +L  +                                   
Sbjct: 268 KMLNVGSNQISDISV---LNNLSQL----------------------------------- 289

Query: 626 ERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL 685
                   ++ L+NN+      + +G L++L  L  S N +    P  L SL+ +   + 
Sbjct: 290 -------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340

Query: 686 SFNQL 690
           +   +
Sbjct: 341 ANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 4e-34
 Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 34/361 (9%)

Query: 141 KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLT 200
            +L E    +L    +  VV    L     S+  L +    +       I +   L  L 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQEELE----SITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 201 LSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPA 260
           L+ N  +T   P SN    L  L +   K +      + NL +L+ L L          +
Sbjct: 73  LNGN-QITDISPLSNLVK-LTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--IS 126

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
            L+NL ++  LNL  N    +      N++ L  +++         P++  NLT L  L 
Sbjct: 127 PLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLS 183

Query: 321 LSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI 380
           L+ NQ    +   AS   L +     N +       +  ++    L  L + NNK+T   
Sbjct: 184 LNYNQIED-ISPLASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLKIGNNKITDLS 237

Query: 381 FQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLS 439
                 P+  +S   L  L++ +N +  +  +   ++++ L+V  N+++    S + NLS
Sbjct: 238 ------PLANLSQ--LTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499
            +  L L+NN L     + +    +L+ L L +N      P   +    + + +  +  +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

Query: 500 E 500
           +
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 6e-31
 Identities = 79/415 (19%), Positives = 144/415 (34%), Gaps = 96/415 (23%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
           L    +  L               +   +T L ++    + I    I  L+ L  L+L+ 
Sbjct: 21  LAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLN- 74

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
                        N   +++ L  L                      L +L +G   +  
Sbjct: 75  ------------GNQITDISPLSNL--------------------VKLTNLYIGTNKIT- 101

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDL 244
                      L+ LT                   LR L L+    S   P  + NL  +
Sbjct: 102 -------DISALQNLTN------------------LRELYLNEDNISDISP--LANLTKM 134

Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
             L+L   +      + LSN+  L  L + +++          NL+ L  +SL +     
Sbjct: 135 YSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 191

Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
             PL+  +LT L       NQ    +   A+   L+ LK+G N +       L  L+   
Sbjct: 192 ISPLA--SLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKITD-----LSPLANLS 243

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVE----LRHLDVQSNLLQRLPFILS-SRIRF 419
            L  L++  N+++             I++V+    L+ L+V SN +  +  + + S++  
Sbjct: 244 QLTWLEIGTNQISD------------INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNS 291

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
           L +++N+L  E    I  L+ +  L LS N ++ + P  LA+   +   D     
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =   99 bits (250), Expect = 6e-23
 Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 63/318 (19%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
           L  L  L +  N        S     T L  L L+    S I  S ++ L+K+ +L+L  
Sbjct: 87  LVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLG- 140

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
                       N+   +L+ L  +                      L  L++    ++ 
Sbjct: 141 -----------ANHNLSDLSPLSNM--------------------TGLNYLTVTESKVKD 169

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLT----GNLPTSNWSSPLRILDLSITKFSGKIPDTIGN 240
             PI   +   L  L+L+ N +       +L +      L      + + +   P  + N
Sbjct: 170 VTPIA--NLTDLYSLSLNYNQIEDISPLASLTS------LHYFTAYVNQITDITP--VAN 219

Query: 241 LRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHL 300
           +  L  L +          + L+NL QLT L +  NQ S    +   +L+KL  +++   
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 301 NFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFN 359
             +    L+  NL+QL+ L L+ NQ   +       L  L+ L L  N +       +  
Sbjct: 276 QISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-----IRP 328

Query: 360 LSTSENLVELDLSNNKLT 377
           L++   +   D +N  + 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.5 bits (210), Expect = 9e-18
 Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 65/301 (21%)

Query: 396 LRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
              L      + ++      +      +    +T     +   L +I  L ++   ++ +
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI 59

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
               +    +L  L+L  NQ     P   S    L  L +  N++      +L N  +L 
Sbjct: 60  QG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLR 113

Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574
            L +  + I+D  P   A L ++  L L +N     +      +      L  + ++ + 
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL----SPLSN-MTGLNYLTVTESK 166

Query: 575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT 634
              + P      L                                              +
Sbjct: 167 VKDVTPIANLTDL---------------------------------------------YS 181

Query: 635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI 694
           + L+ N+ E + P  +  L+SL       N +    P  + ++T L+ L +  N++    
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 695 P 695
           P
Sbjct: 238 P 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  139 bits (353), Expect = 5e-36
 Identities = 64/390 (16%), Positives = 135/390 (34%), Gaps = 32/390 (8%)

Query: 187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKF 246
             ++ +      + +                +  +I+    +         + + R ++ 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 247 LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQL 306
           L+L     +     + +    +  L +  N      P VF N+  LT + L   + +  L
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 307 PLSAF-NLTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTS 363
           P   F N  +L+ L +S N    ++      +   L +L+L  N L   +   L      
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI----- 185

Query: 364 ENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVS 423
            +L   ++S N L+                + +  LD   N +  +   ++  +  L + 
Sbjct: 186 PSLFHANVSYNLLS-----------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234

Query: 424 DNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIF 483
            N LT    + + N   +  ++LS N L  ++         L  L +  N+   ++    
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543
                L  L+L+ N L   +  +      LE L + +N I        +T   L+ L L 
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLS 347

Query: 544 SNSFHGPIYNNVPSIKRPFPELRIIDISRN 573
            N +     N++ ++ R      + D  ++
Sbjct: 348 HNDWD---CNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 2e-26
 Identities = 71/392 (18%), Positives = 129/392 (32%), Gaps = 51/392 (13%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
            D+        ++       L++ + +    +     K+ +     F ++  LNL+    
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 104 SGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSV 159
             I     +    +  L +       +P   F         +N+  L  L+L+   + S+
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---------QNVPLLTVLVLERNDLSSL 132

Query: 160 VPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSS 218
                 N     L +LS+ N  L      D F     L+ L LS N L    +  S   S
Sbjct: 133 PRGIFHNTP--KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH--VDLSLIPS 187

Query: 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQF 278
            L   ++S    S     T+     ++ LD      +  V   +    +LT+L L+ N  
Sbjct: 188 -LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 279 SGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCL 337
           +        N   L  + L++     ++    F  + +L  L +S N+ V  L  +   +
Sbjct: 239 TD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 338 P-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVEL 396
           P L  L L  N L   +            L  L L +N +     +L            L
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFD---RLENLYLDHNSIV--TLKLSTHH-------TL 341

Query: 397 RHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKL 427
           ++L +  N         L   +   +V D   
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 7e-26
 Identities = 57/334 (17%), Positives = 123/334 (36%), Gaps = 24/334 (7%)

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRF 419
           S    +    +  +  Q   +     E I+    + +  +++ +++LP        ++  
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L+++D ++      +     TI+ L +  N++  + P    N   L++L L +N      
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
             IF     L  L++++N LE     +      L+ L + +N++        + +P L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFH 190

Query: 540 LVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599
             +         YN + ++  P   +  +D S N     +       L  +    N+  D
Sbjct: 191 ANVS--------YNLLSTLAIP-IAVEELDASHNSINV-VRGPVNVELTILKLQHNNLTD 240

Query: 600 LDYMNSAGYDQYYSMILTY---KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL 656
             ++    Y     + L+Y   + +       +     + +SNNR    +      + +L
Sbjct: 241 TAWL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 657 KLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           K+L+ SHN L   +         L  L L  N +
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (265), Expect = 1e-24
 Identities = 73/372 (19%), Positives = 127/372 (34%), Gaps = 83/372 (22%)

Query: 214 SNWSSPLRILDLSITKFSGKIPD--TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVL 271
           SN        D+ I   +  +        L + K +            A L + +Q+ +L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 272 NLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQL 330
           NL D Q        F     + ++ +   N    LP   F N+  L++L L RN      
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS--- 130

Query: 331 PCHASCLPLSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSNNKLT---GQIFQLDQW 386
                                 +P  +F N      L  L +SNN L       FQ    
Sbjct: 131 ---------------------SLPRGIFHNTP---KLTTLSMSNNNLERIEDDTFQ---- 162

Query: 387 PVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNL 446
                ++  L++L + SN L  +   L   +   +VS N L+     ++     +E L+ 
Sbjct: 163 -----ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 447 SNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS 506
           S+NS++ ++         L++L L+ N               LV ++L+ NELE  +   
Sbjct: 213 SHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHP 267

Query: 507 LANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELR 566
                 LE L + NN++                               +    +P P L+
Sbjct: 268 FVKMQRLERLYISNNRLV-----------------------------ALNLYGQPIPTLK 298

Query: 567 IIDISRNGFTGL 578
           ++D+S N    +
Sbjct: 299 VLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 47/266 (17%), Positives = 83/266 (31%), Gaps = 82/266 (30%)

Query: 432 PSSICNLSTIEYLN-LSNNSLSGMIPQCLANFDSLSL-----LDLRKNQFRGSIPQIFSK 485
           P   C  S ++Y     +  +          F+ ++L     +  + +  R     +   
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
              +  LNLND ++E     + A    ++ L +G N I                  L  +
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR----------------YLPPH 111

Query: 546 SFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNS 605
            F               P L ++ + RN  +  LP   F +   +               
Sbjct: 112 VFQN------------VPLLTVLVLERNDLS-SLPRGIFHNTPKL--------------- 143

Query: 606 AGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-GKLSSLKLLNFSHN 664
                                      TT+ +SNN  E  I  +     +SL+ L  S N
Sbjct: 144 ---------------------------TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175

Query: 665 ILRGEIPVELTSLTALSVLNLSFNQL 690
            L     V+L+ + +L   N+S+N L
Sbjct: 176 RLTH---VDLSLIPSLFHANVSYNLL 198

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  140 bits (353), Expect = 7e-35
 Identities = 64/390 (16%), Positives = 135/390 (34%), Gaps = 32/390 (8%)

Query: 187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKF 246
             ++ +      + +                +  +I+    +         + + R ++ 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 247 LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQL 306
           L+L     +     + +    +  L +  N      P VF N+  LT + L   + +  L
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 138

Query: 307 PLSAF-NLTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTS 363
           P   F N  +L+ L +S N    ++      +   L +L+L  N L   +   L      
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI----- 191

Query: 364 ENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVS 423
            +L   ++S N L+                + +  LD   N +  +   ++  +  L + 
Sbjct: 192 PSLFHANVSYNLLS-----------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240

Query: 424 DNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIF 483
            N LT    + + N   +  ++LS N L  ++         L  L +  N+   ++    
Sbjct: 241 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543
                L  L+L+ N L   +  +      LE L + +N I        +T   L+ L L 
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKL--STHHTLKNLTLS 353

Query: 544 SNSFHGPIYNNVPSIKRPFPELRIIDISRN 573
            N +     N++ ++ R      + D  ++
Sbjct: 354 HNDWD---CNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 4e-27
 Identities = 99/656 (15%), Positives = 196/656 (29%), Gaps = 103/656 (15%)

Query: 34  ICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTK 92
           I   +    +  D+        ++       L++ + +    +     K+ +     F +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQ 76

Query: 93  LTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRY 148
           +  LNL+      I     +    +  L +       +P   F         +N+  L  
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---------QNVPLLTV 127

Query: 149 LLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLL 207
           L+L+   + S+      N     L +LS+ N  L      D F     L+ L LS N L 
Sbjct: 128 LVLERNDLSSLPRGIFHNTP--KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

Query: 208 TGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ 267
              +  S   S L   ++S    S     T+     ++ LD      +  V   +    +
Sbjct: 185 H--VDLSLIPS-LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVE 233

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQF 326
           LT+L L+ N  +        N   L  + L++     ++    F  + +L  L +S N+ 
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

Query: 327 VGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT---GQIFQL 383
           V                         +  +   +     L  LDLS+N L        Q 
Sbjct: 291 V------------------------ALNLYGQPIP---TLKVLDLSHNHLLHVERNQPQF 323

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443
           D+          L +L +  N +  L       ++ L++S N          CN     +
Sbjct: 324 DR----------LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD-------CNSLRALF 366

Query: 444 LNLSNNSLSGMIPQC---------------LANFDSLSLLDLRKNQFRGSIPQIFSKCYD 488
            N++  ++      C                  +    L  +        + +   +C  
Sbjct: 367 RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA 426

Query: 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
              +N   +                E L+   N++       T    + + L+      H
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLL---QGLH 483

Query: 549 GPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY 608
             I  N+   + P   L     + N     L  R    L+          + D       
Sbjct: 484 AEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ---ARRTEADAKQKETE 540

Query: 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHN 664
           D     I   K +D +  +   +     L   + + +  K+     + ++ +  H+
Sbjct: 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (268), Expect = 2e-24
 Identities = 57/334 (17%), Positives = 121/334 (36%), Gaps = 24/334 (7%)

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRF 419
           S    +    +  +  Q   +     E I+    + +  +++ +++LP        ++  
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L+++D ++      +     TI+ L +  N++  + P    N   L++L L +N      
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
             IF     L  L++++N LE     +      L+ L + +N++        + +P L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFH 196

Query: 540 LVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599
             +         YN + ++  P   +  +D S N    +        L  +    N+  D
Sbjct: 197 ANVS--------YNLLSTLAIP-IAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTD 246

Query: 600 LDYMNSAGYDQYYSMILTY---KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL 656
                   Y     + L+Y   + +       +     + +SNNR    +      + +L
Sbjct: 247 TA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 657 KLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           K+L+ SHN L   +         L  L L  N +
Sbjct: 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 4e-23
 Identities = 82/484 (16%), Positives = 141/484 (29%), Gaps = 154/484 (31%)

Query: 214 SNWSSPLRILDLSITKFSGKIPD--TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVL 271
           SN        D+ I   +  +        L + K +            A L + +Q+ +L
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 272 NLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQL 330
           NL D Q        F     + ++ +   N    LP   F N+  L++L L RN      
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS--- 136

Query: 331 PCHASCLPLSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSNNKLT---GQIFQLDQW 386
                                 +P  +F N      L  L +SNN L       FQ    
Sbjct: 137 ---------------------SLPRGIFHNTP---KLTTLSMSNNNLERIEDDTFQ---- 168

Query: 387 PVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNL 446
                ++  L++L + SN L  +   L   +   +VS N L+     ++     +E L+ 
Sbjct: 169 -----ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218

Query: 447 SNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS 506
           S+NS++ ++         L++L L+ N                                 
Sbjct: 219 SHNSIN-VVRG--PVNVELTILKLQHNNLTD--------------------------TAW 249

Query: 507 LANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELR 566
           L N   L  +D+  N++                  +  + F                 L 
Sbjct: 250 LLNYPGLVEVDLSYNELEK----------------IMYHPFVK------------MQRLE 281

Query: 567 IIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEME 626
            + IS N    L    Y Q +  +                                    
Sbjct: 282 RLYISNNRLVAL--NLYGQPIPTL------------------------------------ 303

Query: 627 RVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLS 686
                   +DLS+N     + +   +   L+ L   HN +   +   L++   L  L LS
Sbjct: 304 ------KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 353

Query: 687 FNQL 690
            N  
Sbjct: 354 HNDW 357

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (345), Expect = 2e-34
 Identities = 71/362 (19%), Positives = 124/362 (34%), Gaps = 52/362 (14%)

Query: 197 RQLTLSDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF 254
           R +       +     +PT       R+LDL   +      D   +   L+ L+L     
Sbjct: 14  RAVLCHRKRFVAVPEGIPTE-----TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NL 313
               P + +NL  L  L L  N+       VF  LS LT++ ++  N    L    F +L
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDL 127

Query: 314 TQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDL 371
             L  LE+  N  V  +   A S L  L  L L    L       L +L     L+ L L
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH---GLIVLRL 183

Query: 372 SNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEF 431
            +  +                        ++    +RL      R++ L +S        
Sbjct: 184 RHLNIN----------------------AIRDYSFKRLY-----RLKVLEISHWPYLDTM 216

Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
             +      +  L++++ +L+ +    + +   L  L+L  N        +  +   L  
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 492 LNLNDNELEGKLPP-SLANCGDLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNS 546
           + L   +L   + P +      L VL+V  N++       F     ++  L+ L+L SN 
Sbjct: 277 IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNP 331

Query: 547 FH 548
             
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 7e-25
 Identities = 76/398 (19%), Positives = 125/398 (31%), Gaps = 103/398 (25%)

Query: 64  LLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL 122
           +    + L+L  N      ++ + F  F  L  L L+ +  S + P   + L  L  L L
Sbjct: 30  IPTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 123 S----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG 178
                  IP   F           L+ L  L +   ++  ++     +L   +L SL +G
Sbjct: 88  RSNRLKLIPLGVF---------TGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVG 136

Query: 179 NCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDT 237
           +  L        F     L QLTL    L +                         IP  
Sbjct: 137 DNDLV-YISHRAFSGLNSLEQLTLEKCNLTS-------------------------IP-- 168

Query: 238 IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISL 297
                                  +LS+L  L VL L     +      F  L +L  + +
Sbjct: 169 ---------------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 298 AHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPS 355
           +H  +   +  +      L+ L ++       +P  A   L  L  L L  N +   I  
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEG 265

Query: 356 WLF-NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS 414
            +   L     L E+ L   +L                        V+    + L     
Sbjct: 266 SMLHELL---RLQEIQLVGGQLA----------------------VVEPYAFRGLN---- 296

Query: 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
             +R L+VS N+LT    S   ++  +E L L +N L+
Sbjct: 297 -YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (266), Expect = 2e-24
 Identities = 68/316 (21%), Positives = 112/316 (35%), Gaps = 31/316 (9%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           LDL  +  + TL+ +       HL++L L  N    + +    F     L  L L  +  
Sbjct: 37  LDLGKN-RIKTLNQDE-FASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 104 SGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSV 159
             I     + LS L  LD+S      +    F         ++L  L+ L + +  +  +
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMF---------QDLYNLKSLEVGDNDLVYI 143

Query: 160 VPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWS- 217
              +   L+  SL  L+L  C L    P +   H   L  L L    +    +   ++  
Sbjct: 144 SHRAFSGLN--SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKR 198

Query: 218 -SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDN 276
              L++L++S   +   +        +L  L +  C        ++ +L  L  LNL  N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHA- 334
             S     +   L +L  I L        +   AF  L  L +L +S NQ    L     
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316

Query: 335 SCLP-LSHLKLGGNFL 349
             +  L  L L  N L
Sbjct: 317 HSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 2e-23
 Identities = 54/302 (17%), Positives = 113/302 (37%), Gaps = 31/302 (10%)

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
           S + R +         +P  + +  R L +  N++         +   +E L L+ N +S
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512
            + P    N  +L  L LR N+ +     +F+   +L  L++++N++   L     +  +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 513 LEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRII 568
           L+ L+VG+N +    + AF    + L  L+ L L   +    + +           L ++
Sbjct: 130 LKSLEVGDNDLVYISHRAF----SGLNSLEQLTLEKCN----LTSIPTEALSHLHGLIVL 181

Query: 569 DISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERV 628
            +        +    F+ L  +       +++ +             L    +       
Sbjct: 182 RLRHLNINA-IRDYSFKRLYRLKV-----LEISHWP----------YLDT--MTPNCLYG 223

Query: 629 LNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
           LN+ T++ +++     +    V  L  L+ LN S+N +       L  L  L  + L   
Sbjct: 224 LNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 689 QL 690
           QL
Sbjct: 283 QL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (256), Expect = 4e-23
 Identities = 75/438 (17%), Positives = 128/438 (29%), Gaps = 132/438 (30%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315
            VP  +    +  +L+L  N+      D F +   L  + L   N    +   AF NL  
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFN 81

Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSNN 374
           L  L L  N+                           IP  +F  LS   NL +LD+S N
Sbjct: 82  LRTLGLRSNRLK------------------------LIPLGVFTGLS---NLTKLDISEN 114

Query: 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS 434
           K+                        +   + Q L       ++ L V DN L      +
Sbjct: 115 KIV----------------------ILLDYMFQDLY-----NLKSLEVGDNDLVYISHRA 147

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
              L+++E L L   +L+ +  + L++   L +L LR           F + Y L  L +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           +       + P+     +L  L + +  +                  +   +        
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTA----------------VPYLAVRH----- 246

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM 614
                     LR +++S N  +  +       L  +                        
Sbjct: 247 -------LVYLRFLNLSYNPIS-TIEGSMLHELLRL------------------------ 274

Query: 615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL 674
                               I L   +   + P     L+ L++LN S N L   +   +
Sbjct: 275 ------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 675 -TSLTALSVLNLSFNQLV 691
             S+  L  L L  N L 
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 3e-34
 Identities = 61/429 (14%), Positives = 130/429 (30%), Gaps = 66/429 (15%)

Query: 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELS 322
           N  +  +  + D+        +  +   +  + L+    + Q+  +     T+L LL LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 323 RNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ 382
            N                                  +L +   L  LDL+NN +  ++  
Sbjct: 67  SNVLYE----------------------------TLDLESLSTLRTLDLNNNYVQ-ELLV 97

Query: 383 LDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIE 442
                        +  L   +N + R+        + + +++NK+T          S ++
Sbjct: 98  GPS----------IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 443 YLNLSNNSLSGM-IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG 501
           YL+L  N +  +   +  A+ D+L  L+L+ N       Q+      L  L+L+ N+L  
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA- 204

Query: 502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRP 561
            + P   +   +  + + NNK+             L+   LR N FH      +      
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH---CGTLRDFFSK 260

Query: 562 FPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGV 621
              ++ +          L  +  +       G       + + +   D+  ++       
Sbjct: 261 NQRVQTVAKQTVKK---LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK------ 311

Query: 622 DLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALS 681
                        +    +  E  +  E    +  + ++      R  I        A  
Sbjct: 312 -------RKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 682 VLNLSFNQL 690
            L      L
Sbjct: 364 TLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (298), Expect = 2e-28
 Identities = 70/476 (14%), Positives = 129/476 (27%), Gaps = 69/476 (14%)

Query: 83  ISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNN 138
           I        +     ++ S     + S       +  LDLS    S I            
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL------- 54

Query: 139 LAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQ 198
                T+L                  LNLSS  L                D+     LR 
Sbjct: 55  --APFTKLEL----------------LNLSSNVLYETL------------DLESLSTLRT 84

Query: 199 LTLSDNGLLT-GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
           L L++N +      P+      +  L  +    S ++       +  K + L        
Sbjct: 85  LDLNNNYVQELLVGPS------IETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITML 135

Query: 258 VPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
                    ++  L+L+ N+     F ++  +   L  ++L +      +        +L
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKL 193

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
             L+LS N+     P   S   ++ + L  N L   I   L       NL   DL  N  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ---NLEHFDLRGNGF 249

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSN-LLQRLPFILSSRIRFLSVSDNKLTGEFPSSI 435
                           +  ++ +  Q+   L        +                    
Sbjct: 250 -----HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 436 CNLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
             L  ++    +  S  G     +     N      +D  K Q+R  I Q+  +    + 
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
           L      L+ ++        +L+          +   + T     LQ+L      +
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE-LQHATEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 5e-28
 Identities = 70/465 (15%), Positives = 137/465 (29%), Gaps = 43/465 (9%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
             ++ S L       S      ++++L+L+ N    ++IS+     FTKL  LNLS +  
Sbjct: 15  EKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 104 SGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAK--NLTELRYLLLDNVQMFSVVP 161
                  +  LS L  LDL++            N + +      +  L   N    S V 
Sbjct: 71  YET--LDLESLSTLRTLDLNN------------NYVQELLVGPSIETLHAANNN-ISRVS 115

Query: 162 SSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP-L 220
            S          ++ L N  +     +D      ++ L L  N + T N      SS  L
Sbjct: 116 CSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 221 RILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG 280
             L+L        +   +     LK LDL        +     +   +T ++L +N+   
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 281 EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG-QLPCHASCLPL 339
                      L    L   N      L  F      +  +++             C   
Sbjct: 228 LIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 340 SHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT-GQIFQLDQWPVERISSVELRH 398
           +    G    +            ++ L+ L    + L  GQ  + ++   ER +    R 
Sbjct: 287 TLGHYGAYCCE------DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 399 LDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI 455
           +D      + +     +       L      L  +  +     + ++           + 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400

Query: 456 PQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
                      L  + K      + Q   +   +   ++  ++  
Sbjct: 401 HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 6e-28
 Identities = 66/475 (13%), Positives = 134/475 (28%), Gaps = 49/475 (10%)

Query: 64  LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
             +  +   +  +      ++S       +  L+LS +  S I  + ++  +KL  L+LS
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 124 SDIPRTKFEQHTFNNLAK-----NLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG 178
           S            N L +     +L+ LR L L+N  +       LL     S+ +L   
Sbjct: 67  S------------NVLYETLDLESLSTLRTLDLNNNYV-----QELLVGP--SIETLHAA 107

Query: 179 NCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWS--SPLRILDLS---ITKFSGK 233
           N  +     +        + + L++N +    L   +    S ++ LDL    I   +  
Sbjct: 108 NNNISR---VSCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVN-- 160

Query: 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLT 293
             +   +   L+ L+L   +    V   +    +L  L+L  N+ +      F + + +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 294 RISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRI 353
            ISL +      +  +      L   +L  N F                 +    +    
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 354 PSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP--F 411
                  +              L           +  +   E   L  Q +  +RL    
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFAD----RLIALKRKEHALLSGQGSETERLECER 332

Query: 412 ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR 471
              +R R +     +                 L     +L   +         L     +
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKL-PPSLANCGDLEVLDVGNNKIND 525
               +  +     +   L  L       E             +   D+  +K   
Sbjct: 393 AVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 6e-22
 Identities = 54/280 (19%), Positives = 99/280 (35%), Gaps = 36/280 (12%)

Query: 411 FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDL 470
               +R +   V+D+ L     S   +   ++ L+LS N LS +    LA F  L LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 471 RKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYW 530
             N    ++         L  L+LN+N ++      L     +E L   NN I+      
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS-- 115

Query: 531 TATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAM 590
            +     + + L +N             +     ++ +D+  N    +  A    S   +
Sbjct: 116 CSRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 591 MHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV 650
            H     ++L Y             +     D++ + V     T+DLS+N+    +  E 
Sbjct: 172 EH-----LNLQYNF-----------IY----DVKGQVVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
              + +  ++  +N L   I   L     L   +L  N  
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 36/237 (15%), Positives = 81/237 (34%), Gaps = 36/237 (15%)

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
           I +   N +   +  +  +  + ++  +    +++  L+L+ N L       LA    LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574
           +L++ +N + +       +L  L+ L L          N V  +    P +  +  + N 
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLN--------NNYVQELL-VGPSIETLHAANNN 110

Query: 575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT 634
            +  +     Q  K +   +N    +  +          +                    
Sbjct: 111 ISR-VSCSRGQGKKNIYLANN---KITMLRDLDEGCRSRV------------------QY 148

Query: 635 IDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           +DL  N  + +   +      +L+ LN  +N +  ++         L  L+LS N+L
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 629 LNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
            N +    ++++  +  +        ++K L+ S N L      +L   T L +LNLS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 689 QLVGPIP 695
            L   + 
Sbjct: 69  VLYETLD 75

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (334), Expect = 5e-34
 Identities = 52/315 (16%), Positives = 105/315 (33%), Gaps = 24/315 (7%)

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS 279
              L    +       D +   +     D    +         +N     +         
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 280 GEFPDVFGNLS--KLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCL 337
               D+  + +      + L  +    Q P  AF L+ L  + +     + +LP      
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 338 P-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS-NNKLT---GQIFQLDQWPVERIS 392
             L  L L  N L   +P+ + +L+    L EL +    +LT     +   D    E   
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLN---RLRELSIRACPELTELPEPLASTDA-SGEHQG 181

Query: 393 SVELRHLDVQSNLLQRLPFILS--SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS 450
            V L+ L ++   ++ LP  ++    ++ L + ++ L+     +I +L  +E L+L   +
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240

Query: 451 LSGMIPQCLANFDSLSLLDLR-KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLAN 509
                P        L  L L+  +    ++P    +   L  L+L       +LP  +A 
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 510 CGDLEVLDVGNNKIN 524
                ++ V  +   
Sbjct: 300 LPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (311), Expect = 5e-31
 Identities = 61/423 (14%), Positives = 118/423 (27%), Gaps = 116/423 (27%)

Query: 91  TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLL 150
           +   +L    S         +S+  +    D +      +           N    +   
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ---------ANSNNPQIET 62

Query: 151 LDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGN 210
               +        L + +    ++L L +  L  +FP   F    L+ +T+   GL+   
Sbjct: 63  RTG-RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-- 118

Query: 211 LPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTV 270
                                  +PDT+     L+ L L        +PAS+++L +L  
Sbjct: 119 -----------------------LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 271 LNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQL 330
           L++       E P+   +                        L  L  L L         
Sbjct: 155 LSIRACPELTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIR--- 196

Query: 331 PCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG---QIFQLDQWP 387
                                 +P+ + NL    NL  L + N+ L+     I  L +  
Sbjct: 197 ---------------------SLPASIANLQ---NLKSLKIRNSPLSALGPAIHHLPK-- 230

Query: 388 VERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLS 447
                   L  LD++                        L   +P      + ++ L L 
Sbjct: 231 --------LEELDLRGC--------------------TALR-NYPPIFGGRAPLKRLILK 261

Query: 448 NNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN---ELEGKLP 504
           + S    +P  +     L  LDLR       +P + ++      + +  +   +L+   P
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 505 PSL 507
            + 
Sbjct: 322 VAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 4e-26
 Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 56/300 (18%)

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
              +      L  + +     + DV     +                 SA+     +  +
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQ 59

Query: 321 LSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT--- 377
           +             +   L                 L +  T    V L+L +  L    
Sbjct: 60  IETR----------TGRALKAT-----------ADLLEDA-TQPGRVALELRSVPLPQFP 97

Query: 378 GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS--SRIRFLSVSDNKLTGEFPSSI 435
            Q F+L            L+H+ + +  L  LP  +   + +  L+++ N L    P+SI
Sbjct: 98  DQAFRLSH----------LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI 146

Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFD---------SLSLLDLRKNQFRGSIPQIFSKC 486
            +L+ +  L++        +P+ LA+ D         +L  L L     R S+P   +  
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205

Query: 487 YDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNS 546
            +L +L + ++ L   L P++ +   LE LD+        +P        L+ L+L+  S
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 2e-25
 Identities = 49/296 (16%), Positives = 90/296 (30%), Gaps = 44/296 (14%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           ++  +   L                 L L        +      + + L H+ +  +   
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 105 GIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAK------NLTELRYLLLDNVQMFS 158
            + P  + + + L  L L+             N L        +L  LR L +      +
Sbjct: 118 EL-PDTMQQFAGLETLTLAR------------NPLRALPASIASLNRLRELSIRACPELT 164

Query: 159 VVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTS--NW 216
            +P  L +  ++      L N                L+ L L   G+ +  LP S  N 
Sbjct: 165 ELPEPLASTDASGEHQ-GLVN----------------LQSLRLEWTGIRS--LPASIANL 205

Query: 217 SSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDN 276
            + L+ L +  +  S  +   I +L  L+ LDL  C      P        L  L L+D 
Sbjct: 206 QN-LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPC 332
                 P     L++L ++ L       +LP     L    ++ +  +        
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 51/339 (15%), Positives = 101/339 (29%), Gaps = 50/339 (14%)

Query: 359 NLSTSENLVEL--DLSN-NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL-- 413
               S  L      LS   +              + +S   +        L+    +L  
Sbjct: 18  YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLED 77

Query: 414 --SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR 471
                   L +    L  +FP     LS ++++ +    L   +P  +  F  L  L L 
Sbjct: 78  ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLA 135

Query: 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT 531
           +N  R ++P   +    L  L++       +LP  LA+                      
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ-------------- 180

Query: 532 ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM 591
             L  LQ L L           ++P+       L+ + I  +  + L PA     L  + 
Sbjct: 181 -GLVNLQSLRLEWTGI-----RSLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLE 232

Query: 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG 651
                 +DL    +          L              +   + L +      +P ++ 
Sbjct: 233 E-----LDLRGCTA----------LR--NYPPIFGGRAPL-KRLILKDCSNLLTLPLDIH 274

Query: 652 KLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           +L+ L+ L+    +    +P  +  L A  ++ +  +  
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 35/275 (12%), Positives = 67/275 (24%), Gaps = 53/275 (19%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L    +     +   +         + +    +        N ++  +        + + 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK-AT 71

Query: 480 PQIFSKCYD--LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537
             +         VAL L    L  + P        L+ + +    +    P        L
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL 129

Query: 538 QVLVLRSNSFHG-PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDND 596
           + L L  N     P      SI      LR + I        LP               +
Sbjct: 130 ETLTLARNPLRALP-----ASIAS-LNRLRELSIRACPELTELP---------------E 168

Query: 597 DIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL 656
            +                            + L    ++ L        +P  +  L +L
Sbjct: 169 PL-------------------ASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNL 208

Query: 657 KLLNFSHNILRGEIPVELTSLTALSVLNLS-FNQL 690
           K L   ++ L   +   +  L  L  L+L     L
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 33/279 (11%), Positives = 73/279 (26%), Gaps = 45/279 (16%)

Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496
           + S  E L    ++        L+ +      D  +               +   +    
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRT 64

Query: 497 NELEGKLPPSLANCGD--LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
                     L +        L++ +  +   FP     L  LQ + + +          
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-----E 118

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPA--RYFQSLKAMMHGDNDDIDLDYMNSAGY--DQ 610
           +P   + F  L  + ++RN    L PA       L+        ++ +          + 
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLR--------ELSIRACPELTELPEP 169

Query: 611 YYSMILTYKGVDLEMERVLNIF-----------------TTIDLSNNRFEGMIPKEVGKL 653
             S   + +   L   + L +                   ++ + N+     +   +  L
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228

Query: 654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLS-FNQLV 691
             L+ L+          P        L  L L   + L+
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (310), Expect = 6e-31
 Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 46/287 (16%)

Query: 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELS 322
           N  +  +  + D+        +  +   +  + L+    + Q+  +     T+L LL LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 323 RNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ 382
            N    +         L  L                       L  LDL+NN +  ++  
Sbjct: 67  SNVLY-ETL------DLESLS---------------------TLRTLDLNNNYVQ-ELLV 97

Query: 383 LDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIE 442
                        +  L   +N + R+        + + +++NK+T          S ++
Sbjct: 98  GPS----------IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 443 YLNLSNNSLSGM-IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG 501
           YL+L  N +  +   +  A+ D+L  L+L+ N       Q+      L  L+L+ N+L  
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA- 204

Query: 502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
            + P   +   +  + + NNK+             L+   LR N FH
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (306), Expect = 2e-30
 Identities = 52/321 (16%), Positives = 108/321 (33%), Gaps = 57/321 (17%)

Query: 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLT 293
           I +   N    K   +        + +   +   +  L+L  N  S          +KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 294 RISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRI 353
            ++L+       L L   +L+ L  L+L+ N                             
Sbjct: 62  LLNLSSNVLYETLDLE--SLSTLRTLDLNNNY---------------------------- 91

Query: 354 PSWLFNLSTSENLVELDLSNNKLT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLP 410
              +  L    ++  L  +NN ++       Q              +++ + +N +  L 
Sbjct: 92  ---VQELLVGPSIETLHAANNNISRVSCSRGQG------------KKNIYLANNKITMLR 136

Query: 411 ---FILSSRIRFLSVSDNKLTG-EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLS 466
                  SR+++L +  N++    F     +  T+E+LNL  N +   +      F  L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLK 194

Query: 467 LLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN-D 525
            LDL  N+    +   F     +  ++L +N+L   +  +L    +LE  D+  N  +  
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 526 AFPYWTATLPRLQVLVLRSNS 546
               + +   R+Q +  ++  
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 3e-23
 Identities = 54/280 (19%), Positives = 99/280 (35%), Gaps = 36/280 (12%)

Query: 411 FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDL 470
               +R +   V+D+ L     S   +   ++ L+LS N LS +    LA F  L LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 471 RKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYW 530
             N    ++         L  L+LN+N ++      L     +E L   NN I+      
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS-- 115

Query: 531 TATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAM 590
            +     + + L +N             +     ++ +D+  N    +  A    S   +
Sbjct: 116 CSRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 591 MHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV 650
            H     ++L Y             +     D++ + V     T+DLS+N+    +  E 
Sbjct: 172 EH-----LNLQYNF-----------IY----DVKGQVVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
              + +  ++  +N L   I   L     L   +L  N  
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 55/400 (13%), Positives = 101/400 (25%), Gaps = 102/400 (25%)

Query: 83  ISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNN 138
           I        +     ++ S     + S       +  LDLS    S I            
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL------- 54

Query: 139 LAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQ 198
                T+L                  LNLSS  L                D+     LR 
Sbjct: 55  --APFTKLEL----------------LNLSSNVLYETL------------DLESLSTLRT 84

Query: 199 LTLSDNGLLT-GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
           L L++N +      P+      +  L  +    S ++                       
Sbjct: 85  LDLNNNYVQELLVGPS------IETLHAANNNIS-RVS---------------------- 115

Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF--NLTQ 315
                S  +    + L +N+ +       G  S++  + L        +  +    +   
Sbjct: 116 ----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDT 170

Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
           L  L L  N     +        L  L L  N L   +     + +    +  + L NNK
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA---GVTWISLRNNK 225

Query: 376 LT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432
           L      +               L H D++ N            +R     + ++     
Sbjct: 226 LVLIEKALRFSQN----------LEHFDLRGNGFHCGT------LRDFFSKNQRVQTVAK 269

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK 472
            ++  L+       +  +L      C  +  +     L  
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 54/286 (18%), Positives = 93/286 (32%), Gaps = 32/286 (11%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
             ++ S L       S      ++++L+L+ N    ++IS+     FTKL  LNLS +  
Sbjct: 15  EKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 104 SGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAK--NLTELRYLLLDNVQMFSVVP 161
                  +  LS L  LDL++            N + +      +  L   N    S V 
Sbjct: 71  YET--LDLESLSTLRTLDLNN------------NYVQELLVGPSIETLHAANNN-ISRVS 115

Query: 162 SSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP-L 220
            S          ++ L N  +     +D      ++ L L  N + T N      SS  L
Sbjct: 116 CSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 221 RILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG 280
             L+L        +   +     LK LDL        +     +   +T ++L +N+   
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 281 EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQF 326
                      L    L   N      L  F      +  +++   
Sbjct: 228 LIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 55/320 (17%), Positives = 110/320 (34%), Gaps = 41/320 (12%)

Query: 395 ELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
             +   V  + L++        +  ++ L +S N L+    + +   + +E LNLS+N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 452 SGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511
              +   L +  +L  LDL  N  +  +    S    +  L+  +N +  ++  S     
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQ-ELLVGPS----IETLHAANNNIS-RVSCSRGQ-- 120

Query: 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
             + + + NNKI            R+Q L L+ N        N   +      L  +++ 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASSDTLEHLNLQ 177

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
            N    +     F  LK         +DL   N           L +  +  E +    +
Sbjct: 178 YNFIYDVKGQVVFAKLK--------TLDLSS-NK----------LAF--MGPEFQSAAGV 216

Query: 632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR-GEIPVELTSLTALSVLNL-SFNQ 689
            T I L NN+   +I K +    +L+  +   N    G +    +    +  +   +  +
Sbjct: 217 -TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 690 LVGPIPQGKQFDSFQNDSFI 709
           L G   +     +  +    
Sbjct: 275 LTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 36/237 (15%)

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
           I +   N +   +  +  +  + ++  +    +++  L+L+ N L       LA    LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574
           +L++ +N + +       +L  L+ L L          N V  +    P +  +  + N 
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLN--------NNYVQELL-VGPSIETLHAANNN 110

Query: 575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT 634
            +  +     Q  K +   +N    L                     DL+      +   
Sbjct: 111 ISR-VSCSRGQGKKNIYLANNKITMLR--------------------DLDEGCRSRV-QY 148

Query: 635 IDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           +DL  N  + +   +      +L+ LN  +N +  ++         L  L+LS N+L
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 45/236 (19%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           + L+++ +  T+  +        +Q L+L  N+ +    +        L HLNL +++  
Sbjct: 125 IYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 105 GIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSL 164
            +   Q+   +KL  LDLSS            N L                  + +    
Sbjct: 183 DV-KGQVV-FAKLKTLDLSS------------NKL------------------AFMGPEF 210

Query: 165 LNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRIL 223
            + +   +  +SL N  L       +     L    L  NG   G L      +  ++ +
Sbjct: 211 QSAA--GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS 279
                K      +    +  L     Y C         L       ++ L  +   
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCC-------EDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 32/72 (44%)

Query: 624 EMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVL 683
           E+++  N +    ++++  +  +        ++K L+ S N L      +L   T L +L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 684 NLSFNQLVGPIP 695
           NLS N L   + 
Sbjct: 64  NLSSNVLYETLD 75

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (317), Expect = 3e-30
 Identities = 72/374 (19%), Positives = 129/374 (34%), Gaps = 50/374 (13%)

Query: 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED 275
            ++   +L++  +  +  +PD +     +  L +        +PA    L     L +  
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSG 90

Query: 276 NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS 335
           NQ +   P +   L +L+  S    +            + L  L +  NQ    LP    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQL-TSLP--VL 139

Query: 336 CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVE 395
              L  L +  N L   +P+          L +L   NN+LT     L        S   
Sbjct: 140 PPGLQELSVSDNQLA-SLPALP------SELCKLWAYNNQLT----SLP----MLPSG-- 182

Query: 396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI 455
           L+ L V  N L  LP + S  +  L   +N+LT   P+    L   + L +S N L+  +
Sbjct: 183 LQELSVSDNQLASLPTLPSE-LYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLTS-L 236

Query: 456 PQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEV 515
           P   +    L  L +  N+   S+P + S    L++L++  N+L  +LP SL +      
Sbjct: 237 PVLPSE---LKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 516 LDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575
           +++  N +++        +            F      + P   R         +     
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG-ASAPRETRALHLAAADWLVPARE 347

Query: 576 TGLLPARYFQSLKA 589
               PA  +     
Sbjct: 348 GEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 1e-28
 Identities = 84/403 (20%), Positives = 142/403 (35%), Gaps = 60/403 (14%)

Query: 158 SVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWS 217
           + V   +    +     L++G   L    P  +     +  L + DN L +  LP     
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS--LPALP-- 80

Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNL------------ 265
             LR L++S  + +  +P     L +L      + +    +P+ L  L            
Sbjct: 81  PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPV 138

Query: 266 --KQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSR 323
               L  L++ DNQ +   P +   L KL      +   T  LP+    L +LS+   S 
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQELSV---SD 190

Query: 324 NQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQL 383
           NQ    LP       L  L    N L   +P+          L EL +S N+LT      
Sbjct: 191 NQLA-SLP--TLPSELYKLWAYNNRLT-SLPALP------SGLKELIVSGNRLTSLPVLP 240

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443
            +          L+ L V  N L  LP + S  +  LSV  N+LT   P S+ +LS+   
Sbjct: 241 SE----------LKELMVSGNRLTSLPMLPSG-LLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 444 LNLSNNSLS---GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
           +NL  N LS       + + +    S   +R +    S P+     +   A  L      
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG 348

Query: 501 GKLPP----SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
              P           + +   +  +++++   +      + Q+
Sbjct: 349 EPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQI 391

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 5e-23
 Identities = 77/389 (19%), Positives = 130/389 (33%), Gaps = 100/389 (25%)

Query: 313 LTQLSLLELSRNQFVGQLPCHASCLP--LSHLKLGGNFLDGRIPSWLFNLSTSENLVELD 370
               ++L +  +     LP    CLP  ++ L +  N L   +P+          L  L+
Sbjct: 39  NNGNAVLNVGESGL-TTLP---DCLPAHITTLVIPDNNLT-SLPALP------PELRTLE 87

Query: 371 LSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE 430
           +S N+LT         PV     +EL         L  LP    S +  L +  N+LT  
Sbjct: 88  VSGNQLT-------SLPVLPPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQLT-S 135

Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
            P     L   + L++S+N L+  +P   +    L  L    NQ   S+P + S    L 
Sbjct: 136 LPVLPPGL---QELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG---LQ 184

Query: 491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP 550
            L+++DN+L   LP       +L  L   NN++  + P   A    L+ L++  N     
Sbjct: 185 ELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT-SLP---ALPSGLKELIVSGNRLT-- 234

Query: 551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQ 610
                 S+     EL+ + +S N  T  LP      L                       
Sbjct: 235 ------SLPVLPSELKELMVSGNRLTS-LPML-PSGL----------------------- 263

Query: 611 YYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEI 670
                                  ++ +  N+    +P+ +  LSS   +N   N L    
Sbjct: 264 ----------------------LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 671 PVELTSLTALSVLNLSFNQLVGPIPQGKQ 699
              L  +T+    +    +         +
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.0 bits (223), Expect = 1e-18
 Identities = 77/438 (17%), Positives = 130/438 (29%), Gaps = 84/438 (19%)

Query: 64  LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
           L   L+ L ++ N    T +        +L+  +                          
Sbjct: 79  LPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNP------------------------ 112

Query: 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR 183
                         +L    + L  L +   Q  + +P     L       LS+ +  L 
Sbjct: 113 ------------LTHLPALPSGLCKLWIFGNQ-LTSLPVLPPGLQ-----ELSVSDNQLA 154

Query: 184 GEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRD 243
              P        L +L   +N L +  LP    S  L+ L +S  + +  +P     L  
Sbjct: 155 -SLPALPSE---LCKLWAYNNQLTS--LPML-PSG-LQELSVSDNQLA-SLPTLPSELYK 205

Query: 244 LKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT 303
           L   +  +      +PA  S LK+   L +  N+ +   P +   L +L    ++    T
Sbjct: 206 LWAYNNRLT----SLPALPSGLKE---LIVSGNRLT-SLPVLPSELKEL---MVSGNRLT 254

Query: 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLST 362
             LP+     + L  L + RNQ   +LP     L   + + L GN L  R    L  ++ 
Sbjct: 255 -SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT- 308

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSV 422
                     +  +     + D             HL     L+       +   R+   
Sbjct: 309 -----SAPGYSGPII----RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI 482
                   F   +  LS  E   + +      I   LA         LR N F     + 
Sbjct: 360 GQEDNADAFSLFLDRLSETEN-FIKDAGFKAQISSWLAQLAEDE--ALRANTFA-MATEA 415

Query: 483 FSKCYDLVALNLNDNELE 500
            S C D V   L+  +  
Sbjct: 416 TSSCEDRVTFFLHQMKNV 433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 46/256 (17%), Positives = 83/256 (32%), Gaps = 58/256 (22%)

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
            C  +    LN+  + L+  +P CL     ++ L +  N    S+P +  +   L  L +
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRTLEV 88

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           + N+L   LP       +L +       +        A    L  L +  N         
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHL-------PALPSGLCKLWIFGNQLT------ 134

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM 614
             S+    P L+ + +S N    L        L  +   +N                   
Sbjct: 135 --SLPVLPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQ------------------ 172

Query: 615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL 674
            LT       +  + +    + +S+N+    +P    +L  L   N   N L   +P   
Sbjct: 173 -LT------SLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALP 220

Query: 675 TSLTALSVLNLSFNQL 690
           + L     L +S N+L
Sbjct: 221 SGLK---ELIVSGNRL 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 34/217 (15%), Positives = 57/217 (26%), Gaps = 69/217 (31%)

Query: 476 RGSIPQIFSKCYD--LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTAT 533
           R ++ Q    C +     LN+ ++ L   LP  L     +  L + +N +    P   A 
Sbjct: 27  RAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LP---AL 79

Query: 534 LPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHG 593
            P L+ L +  N        ++P +     EL I          L               
Sbjct: 80  PPELRTLEVSGNQLT-----SLPVLPPGLLELSIFSNPLTHLPALPSG------------ 122

Query: 594 DNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL 653
                                                    + +  N+    +P      
Sbjct: 123 --------------------------------------LCKLWIFGNQLTS-LPVL---P 140

Query: 654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
             L+ L+ S N L   +P   + L  L   N     L
Sbjct: 141 PGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSL 176

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (293), Expect = 1e-27
 Identities = 83/512 (16%), Positives = 164/512 (32%), Gaps = 76/512 (14%)

Query: 210 NLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT 269
           +L          IL++S    S      I +L  L+ L +          +     ++L 
Sbjct: 18  DLSQK-----TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVG 328
            L+L  N+   +          L  + L+   F        F N++QL  L LS      
Sbjct: 73  YLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 329 QLPCHASCLPLSHLKL--GGNFLDGRIPSWLFNLSTSENLVELDLSN--NKLTGQIFQLD 384
                 + L +S + L  G  + +   P  L + +T    +    +   + +     +  
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 385 QWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI---CNLSTI 441
                      L        L        + ++  L++++ + T      I      +T+
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 442 EYLNLSNNSLSGMIPQCLANF-----DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496
            Y ++SN  L G +     ++      +LS+  +  + F      I+    ++   N   
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 497 NELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP 556
           +          +       LD  NN + D        L  L+ L+L+ N         + 
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-----ELS 364

Query: 557 SIKRPF---PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYS 613
            I         L+ +DIS+N  +           K++                       
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL----------------------- 401

Query: 614 MILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVE 673
                               ++++S+N     I + +     +K+L+   N ++  IP +
Sbjct: 402 -------------------LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 674 LTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
           +  L AL  LN++ NQL   +P G  FD   +
Sbjct: 440 VVKLEALQELNVASNQLKS-VPDG-IFDRLTS 469

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 2e-27
 Identities = 83/451 (18%), Positives = 158/451 (35%), Gaps = 40/451 (8%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           L +S + +       S       L+ L+L+ N         +      L HL+LSF+ F 
Sbjct: 50  LIISHNRI--QYLDISVFKFNQELEYLDLSHNKLV----KISCHPTVNLKHLDLSFNAFD 103

Query: 105 GI-VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSS 163
            + +  +   +S+L  L LS+    T  E+ +   +A        L+L         P  
Sbjct: 104 ALPICKEFGNMSQLKFLGLST----THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159

Query: 164 LLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDN------GLLTGNLPTSNWS 217
           L + ++ SL  +   N        + +     L    +               L     +
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 218 SPLRILDLSITKFSGKIPDTIGNLRD---LKFLDLYVCYFDGQ-----VPASLSNLKQLT 269
             L  L L+  + +      I  L     + +  +      GQ        S ++LK L+
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFVG 328
           +  +  + F      ++   S +   +   ++ T  + +   + ++    L+ S N    
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNF-TVSGTRMVHMLCPSKISPFLHLDFSNNLLT- 337

Query: 329 QLPCHASC-LP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD-Q 385
                    L  L  L L  N L   +       +  ++L +LD+S N ++    + D  
Sbjct: 338 DTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 386 WPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
           W         L  L++ SN+L    F  L  RI+ L +  NK+    P  +  L  ++ L
Sbjct: 397 WT------KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449

Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
           N+++N L  +         SL  + L  N +
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 4e-26
 Identities = 97/489 (19%), Positives = 178/489 (36%), Gaps = 66/489 (13%)

Query: 67  HLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD 125
               LN++ N    +++ ++     +KL  L +S +    +  S      +L  LDLS  
Sbjct: 22  KTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH- 78

Query: 126 IPRTKFEQHTFNNLAK----NLTELRYLLLDNVQMFSVVPSSLL-NLSSASLISLSLGNC 180
                      N L K        L++L L      ++       N+S   L  L L   
Sbjct: 79  -----------NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS--QLKFLGLSTT 125

Query: 181 FLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTS---NWSSPLRILDLSITKFSGKIPDT 237
            L     + I H    + L +          P       +  L I+  +  +F   +  +
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 238 IGNLRDLKFLDLY------VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD---VFGN 288
           +  + +L+  ++        C +   + A L    +L+ L L + + +            
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 289 LSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG---QLPCHASCLPLSHLKL- 344
            + +   S++++   GQL    F+ +  SL  LS +Q V      P        S++ + 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 345 -----GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ-LDQWPVERISSVELRH 398
                G   +    PS +         + LD SNN LT  +F+             EL  
Sbjct: 306 NFTVSGTRMVHMLCPSKI------SPFLHLDFSNNLLTDTVFENCGHLT-------ELET 352

Query: 399 LDVQSNLLQRLP-----FILSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLS 452
           L +Q N L+ L            ++ L +S N ++ +     C    ++  LN+S+N L+
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512
             I +CL     + +LDL  N+ + SIP+   K   L  LN+  N+L+            
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 513 LEVLDVGNN 521
           L+ + +  N
Sbjct: 470 LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (275), Expect = 2e-25
 Identities = 96/500 (19%), Positives = 180/500 (36%), Gaps = 59/500 (11%)

Query: 91  TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS----DIPRTKFEQHTFNNLAKNLTEL 146
            K T LN+S +Y S +  S I  LSKL  L +S      +  + F+            EL
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF---------NQEL 71

Query: 147 RYLLLDNVQMFSVVPSSL-----LNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTL 201
            YL L + ++  +          L+LS  +  +L +   F          +   L+ L L
Sbjct: 72  EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFG---------NMSQLKFLGL 122

Query: 202 SDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPAS 261
           S   L   ++      +  ++L +    +  K       L+D     L++ +   +    
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHF 180

Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL 321
           + ++   TV NLE +       D   +        L        L L+    T  S + +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 322 SRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTS--ENLVELDLSNNKLTGQ 379
            +               + +  +    L G++    F+ S +  + L    + ++     
Sbjct: 241 LQLV---------WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 380 IFQLDQWPVERISSVELRHLDV-QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNL 438
              + +      S++ +++  V  + ++  L     S    L  S+N LT     +  +L
Sbjct: 292 QSYIYEI----FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLS---LLDLRKNQFRGSIPQ-IFSKCYDLVALNL 494
           + +E L L  N L   + +       +     LD+ +N       +   S    L++LN+
Sbjct: 348 TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           + N L   +   L     ++VLD+ +NKI  + P     L  LQ L + SN        +
Sbjct: 407 SSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-----S 458

Query: 555 VP-SIKRPFPELRIIDISRN 573
           VP  I      L+ I +  N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 69/455 (15%), Positives = 137/455 (30%), Gaps = 89/455 (19%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315
            VP  LS  ++ T+LN+  N  S  +     +LSKL  + ++H N    L +S F    +
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQE 70

Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
           L  L+LS N+           +                           NL  LDLS N 
Sbjct: 71  LEYLDLSHNKL--------VKISCHPTV---------------------NLKHLDLSFNA 101

Query: 376 LT----GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF----ILSSRIRFLSVSDNKL 427
                  + F          +  +L+ L + +  L++        L+     L + +   
Sbjct: 102 FDALPICKEFG---------NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 428 TGEFPSSICNLSTIE--YLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK 485
             E P  + + +T     +  +N     ++   +    +L L +++            S 
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
                   L  N     L  +         + +                  +    + + 
Sbjct: 213 L-----AKLQTNPKLSNLTLNNIETTWNSFIRILQL----------VWHTTVWYFSISNV 257

Query: 546 SFHGPIYNNVPS-IKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN 604
              G +              L I  +  + F     +  ++    M   +        ++
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHN 664
                +                  ++ F  +D SNN     + +  G L+ L+ L    N
Sbjct: 317 MLCPSK------------------ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 665 ILR--GEIPVELTSLTALSVLNLSFNQLVGPIPQG 697
            L+   +I    T + +L  L++S N +     +G
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  114 bits (286), Expect = 5e-27
 Identities = 78/472 (16%), Positives = 148/472 (31%), Gaps = 107/472 (22%)

Query: 91  TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLL 150
             + +++LS +  + +  +  SRL  L  L +    P      +TF    + L+ L  L 
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF----RGLSSLIILK 85

Query: 151 LDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGN 210
           LD  Q   +   +   L++                          L  LTL+   L    
Sbjct: 86  LDYNQFLQLETGAFNGLAN--------------------------LEVLTLTQCNLDGAV 119

Query: 211 LPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASL-SNLKQLT 269
           L                        +    L  L+ L L         PAS   N+++  
Sbjct: 120 LS----------------------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157

Query: 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ 329
           VL+L  N+      +   N                    +   L+ ++L +++     G 
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKH--------------FTLLRLSSITLQDMNEYWL-GW 202

Query: 330 LPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG------QIF 381
             C        ++ L L GN     +    F+      +  L LSN+   G         
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 382 QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441
             D +  + + +  ++  D+  + +  L                       S   + + +
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALL---------------------KSVFSHFTDL 301

Query: 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG 501
           E L L+ N ++ +          L  L+L +N       ++F     L  L+L+ N +  
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361

Query: 502 KLPP-SLANCGDLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
            L   S     +L+ L +  N++    +  F      L  LQ + L +N + 
Sbjct: 362 -LGDQSFLGLPNLKELALDTNQLKSVPDGIF----DRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (253), Expect = 8e-23
 Identities = 67/432 (15%), Positives = 128/432 (29%), Gaps = 82/432 (18%)

Query: 58  PNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKL 117
             ++   L  LQ L +          ++ F   + L  L L ++ F  +     + L+ L
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105

Query: 118 VALDL------SSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLL-NLSSA 170
             L L       + +    F         K LT L  L+L +  +  + P+S   N+   
Sbjct: 106 EVLTLTQCNLDGAVLSGNFF---------KPLTSLEMLVLRDNNIKKIQPASFFLNMRR- 155

Query: 171 SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKF 230
                                       L L+ N               ++ +       
Sbjct: 156 -------------------------FHVLDLTFN--------------KVKSICEEDLLN 176

Query: 231 SGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS 290
                 T+  L  +   D+   +   +   +      +T L+L  N F       F +  
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 291 KLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350
             T+I    L+ +  +  S       +  +     F G          +    L  + + 
Sbjct: 237 AGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKG-----LEASGVKTCDLSKSKI- 287

Query: 351 GRIPSWLFNLSTSENLVELDLSNNKLT---GQIFQLDQWPVERISSVELRHLDVQSNLLQ 407
             +   +F+  T  +L +L L+ N++       F              L  L++  N L 
Sbjct: 288 FALLKSVFSHFT--DLEQLTLAQNEINKIDDNAFW---------GLTHLLKLNLSQNFLG 336

Query: 408 RLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS 464
            +    F    ++  L +S N +      S   L  ++ L L  N L  +         S
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396

Query: 465 LSLLDLRKNQFR 476
           L  + L  N + 
Sbjct: 397 LQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 72/435 (16%), Positives = 130/435 (29%), Gaps = 95/435 (21%)

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQF 326
           +  ++L  N  +      F  L  L  + +        +  + F  L+ L +L+L  NQF
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 327 VGQLPCHA--SCLPLSHLKLGGNFL-DGRIPSWLF-NLSTSENLVELDLSNNKLT----G 378
           + QL   A      L  L L    L    +    F  L+   +L  L L +N +      
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT---SLEMLVLRDNNIKKIQPA 147

Query: 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNL 438
             F          +      LD+  N ++ +          L+      T      +  L
Sbjct: 148 SFFL---------NMRRFHVLDLTFNKVKSIC-----EEDLLNFQGKHFT------LLRL 187

Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
           S+I   +++   L            S++ LDL  N F+ S+ + F        +      
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 499 LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS- 557
                     +          N K  D F +       ++   L  +         +   
Sbjct: 248 N---------SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-----ALLKS 293

Query: 558 IKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILT 617
           +   F +L  + +++N    +     F  L  +                           
Sbjct: 294 VFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHL--------------------------- 325

Query: 618 YKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-GKLSSLKLLNFSHNILRGEIPVEL-T 675
                            ++LS N   G I   +   L  L++L+ S+N +R  +  +   
Sbjct: 326 ---------------LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 676 SLTALSVLNLSFNQL 690
            L  L  L L  NQL
Sbjct: 369 GLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 44/277 (15%)

Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDN 497
           + + Y++LS NS++ +     +    L  L + +      I    F     L+ L L+ N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 498 ELEGKLPPS-LANCGDLEVLDVGNNKINDAF--PYWTATLPRLQVLVLRSNSFH----GP 550
           +   +L         +LEVL +    ++ A     +   L  L++LVLR N+        
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAM--MHGDNDDIDLDYMNSAGY 608
            + N+           ++D++ N     +      + +           I L  MN    
Sbjct: 149 FFLNMRR-------FHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLK-----LLNFSH 663
                                   TT+DLS N F+  + K      +       +L+ S+
Sbjct: 201 GWEKCGNP----------FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 664 NILRGEIPVELTSL----------TALSVLNLSFNQL 690
           N+                      + +   +LS +++
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 633 TTIDLSNNRFEGMIPKEV-GKLSSLKLLNFSHNILRGEIPVE-LTSLTALSVLNLSFNQL 690
             + +       +I       LSSL +L   +N    ++       L  L VL L+   L
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNL 115

Query: 691 VGPIPQGKQFDSFQN 705
            G +  G  F    +
Sbjct: 116 DGAVLSGNFFKPLTS 130

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 1e-26
 Identities = 80/428 (18%), Positives = 156/428 (36%), Gaps = 34/428 (7%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGI-VPSQISRLSKLVALDLS 123
              L+ L+++ N      IS        L HL+LSF+ F  + V  +   L+KL  L LS
Sbjct: 99  NQDLEYLDVSHNRL--QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR 183
           +     KF Q     +A        L L +  +      SL   ++  L  +   N    
Sbjct: 155 A----AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 184 GEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPD------- 236
            +  + +     L+   +  N      L T           L++T    +          
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 237 TIGNLRDLKFLDLYVCYFDGQVP-----ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSK 291
                R +++L++Y      ++       S + LK L + ++++  F      ++   ++
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 292 LTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFL 349
           +    L  ++ T  + +      +  + L  ++N F   +    S L  L  L L  N L
Sbjct: 331 MNIKML-SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 350 DGRIPSWLFNLSTSENLVELDLSNNKLTGQIF-QLDQWPVERISSVELRHLDVQSNLLQR 408
                          +L  LD+S N L    + +   W         +  L++ SN+L  
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA------ESILVLNLSSNMLTG 442

Query: 409 LPFI-LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSL 467
             F  L  +++ L + +N++    P  + +L  ++ LN+++N L  +         SL  
Sbjct: 443 SVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501

Query: 468 LDLRKNQF 475
           + L  N +
Sbjct: 502 IWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  107 bits (269), Expect = 2e-24
 Identities = 92/511 (18%), Positives = 178/511 (34%), Gaps = 76/511 (14%)

Query: 210 NLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT 269
           +LP        + L LS    S      I  L +L+ L L                + L 
Sbjct: 49  DLPPR-----TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103

Query: 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF--NLTQLSLLELSRNQFV 327
            L++  N+           ++ L  + L+  +F   LP+     NLT+L+ L LS  +F 
Sbjct: 104 YLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 328 GQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWP 387
                  + L LS + L  + +   I           N   L L  +  +    Q++   
Sbjct: 160 QLDLLPVAHLHLSCILL--DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS- 216

Query: 388 VERISSVELRHLDVQSNLLQRLP-----FILSSRIRFLSVSDNKLTGEFPSSICNL---S 439
           V  +  ++L ++ +     QRL            +  +++   + T +    +       
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 440 TIEYLNLSNNSLSGMIPQCLANFDSLSL-----LDLRKNQFRGSIPQIFSKCYDLVALNL 494
            +EYLN+ N +++  I +    +   +L       ++   F  S   ++S   ++    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           + ++          +      L+   N   D+     +TL RLQ L+L+ N      +  
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--NFFK 394

Query: 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM 614
           V  + +    L  +D+S N        R     +++                        
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI------------------------ 430

Query: 615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL 674
                               ++LS+N   G + + +     +K+L+  +N +   IP ++
Sbjct: 431 ------------------LVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDV 469

Query: 675 TSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
           T L AL  LN++ NQL   +P G  FD   +
Sbjct: 470 THLQALQELNVASNQLKS-VPDG-VFDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 1e-22
 Identities = 89/489 (18%), Positives = 165/489 (33%), Gaps = 58/489 (11%)

Query: 91  TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS----DIPRTKFEQHTFNNLAKNLTEL 146
            +   L+LS +  S +    IS LS+L  L LS      +    F             +L
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF---------LFNQDL 102

Query: 147 RYLLLDNVQMFSVVPSSL-----LNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTL 201
            YL + + ++ ++    +     L+LS      L +   F              L  L L
Sbjct: 103 EYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGN---------LTKLTFLGL 153

Query: 202 SDNGLLTGNLPT-SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPA 260
           S       +L   ++      +LDL      G   +++    +   L L           
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQ 212

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
              ++  L  L L + + + E                  LN T    L     T    ++
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT----LQHIETTWKCSVK 268

Query: 321 LSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTS--ENLVELDLSNNKLTG 378
           L +  +           P+ +L +    +  RI    F  S +  ++L+   + N     
Sbjct: 269 LFQFFW---------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ---- 315

Query: 379 QIFQLDQWPVERISSVELRHLDV-QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICN 437
                 +      + + ++ L +  +  +  +     S   FL+ + N  T         
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 438 LSTIEYLNLSNNSLS--GMIPQCLANFDSLSLLDLRKNQF-RGSIPQIFSKCYDLVALNL 494
           L  ++ L L  N L     +     N  SL  LD+  N     +  +  +    ++ LNL
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN---SFHGPI 551
           + N L G +   L     ++VLD+ NN+I  + P     L  LQ L + SN   S    +
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 552 YNNVPSIKR 560
           ++ + S++ 
Sbjct: 493 FDRLTSLQY 501

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 76/441 (17%), Positives = 138/441 (31%), Gaps = 77/441 (17%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315
            VP  L    +   L+L  N  S         LS+L  + L+H N    L    F     
Sbjct: 45  HVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQD 101

Query: 316 LSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSN 373
           L  L++S N+    + C    +  L HL L  N  D       F NL+    L  L LS 
Sbjct: 102 LEYLDVSHNRLQN-ISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSA 155

Query: 374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
            K                  ++L    ++    + L    ++    L +  +  +     
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV---LHLVFHPNSLFSVQ 212

Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
              +++ + +L LSN  L+    Q L  F S                +   KC   +   
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKIND--AFPYWTATLPRLQVLVLRSNSFHGPI 551
                +E            L + ++   +  D   F Y    L  L +  +++  F    
Sbjct: 273 FWPRPVE-----------YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF---- 317

Query: 552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQY 611
             +  ++   F E+ I  +S +  T  +      S  +                      
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSS---------------------- 354

Query: 612 YSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR--GE 669
                               FT ++ + N F   + +    L  L+ L    N L+   +
Sbjct: 355 --------------------FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 670 IPVELTSLTALSVLNLSFNQL 690
           + +   ++++L  L++S N L
Sbjct: 395 VALMTKNMSSLETLDVSLNSL 415

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  111 bits (280), Expect = 3e-26
 Identities = 82/475 (17%), Positives = 166/475 (34%), Gaps = 64/475 (13%)

Query: 54  GTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISR 113
           G     +  F   +      A  +   T  + +  Q   LT L+   S  + +  + I +
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATD-TISEEQLATLTSLDCHNSSITDM--TGIEK 62

Query: 114 LSKLVALDLSSDIPRTKFEQHTFNNLAK----NLTELRYLLLDNVQMFSVVPSSLLNLSS 169
           L+ L  L  +S            NN+        T L YL  D+ ++ ++  + L  L+ 
Sbjct: 63  LTGLTKLICTS------------NNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLT- 109

Query: 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITK 229
                L+     L     +D+   P L  L  + N L    +  S+ +  L  LD  + K
Sbjct: 110 ----YLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTE--IDVSHNTQ-LTELDCHLNK 159

Query: 230 FSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNL 289
              K+   +     L  LD             +S  K L  LN + N  + +        
Sbjct: 160 KITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQN 211

Query: 290 SKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFL 349
            +LT +  +    T ++ ++   LTQL+  + S N    +L    +   L+ L      L
Sbjct: 212 IQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPL-TELDVS-TLSKLTTLHCIQTDL 266

Query: 350 DGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL 409
                    +L+ +  L+       +   +   +           +L  LD Q+  +  L
Sbjct: 267 LE------IDLTHNTQLIYFQAEGCRKI-KELDVTHNT-------QLYLLDCQAAGITEL 312

Query: 410 PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLD 469
               + ++ +L +++ +LT E    + + + ++ L+  N  +       +    +L+   
Sbjct: 313 DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNF 367

Query: 470 LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524
             + Q      +  +   + + + ++ + L+    P     GD  V D   N I 
Sbjct: 368 EAEGQTITMPKETLTN--NSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 68/467 (14%), Positives = 140/467 (29%), Gaps = 97/467 (20%)

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
           S   L  LT L+  ++  +         L+ LT++     N T  L LS    T L+ L 
Sbjct: 37  SEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLDLS--QNTNLTYLA 91

Query: 321 LSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI 380
              N+         + L ++ L                       L  L+   NKLT   
Sbjct: 92  CDSNKL--------TNLDVTPLT---------------------KLTYLNCDTNKLT--- 119

Query: 381 FQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST 440
                  ++   +  L +L+   N L  +    ++++  L    NK        +   + 
Sbjct: 120 ------KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQ 171

Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
           +  L+ S N ++ +    ++    L+ L+   N     +    ++   L  L+ + N+L 
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

Query: 501 GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKR 560
            ++   +     L   D   N + +      +TL +L  L              +     
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDL-----LEIDLTH- 273

Query: 561 PFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDND--DIDLDYMNSAGYDQYYSMILTY 618
              +L             L   +   L  +        ++DL               L Y
Sbjct: 274 -NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK----------LVY 322

Query: 619 KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT 678
                           + L+N      +   V   + LK L+  +  ++ +    +  + 
Sbjct: 323 ----------------LYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIP 361

Query: 679 ALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSN 725
           AL+    +  Q +    +    +S         L   G  +  +  +
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 64/424 (15%), Positives = 133/424 (31%), Gaps = 86/424 (20%)

Query: 274 EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH 333
           +   F+  FPD             A         +S   L  L+ L+   +         
Sbjct: 7   QTQSFNDWFPD-----DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-------- 53

Query: 334 ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG-QIFQLDQWPVERIS 392
                ++ +                 +     L +L  ++N +T   + Q          
Sbjct: 54  -----ITDMT---------------GIEKLTGLTKLICTSNNITTLDLSQNTN------- 86

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
              L +L   SN L  L     +++ +L+   NKLT      +     + YLN + N+L+
Sbjct: 87  ---LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT 140

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512
             I   +++   L+ LD   N+    +    +    L  L+ + N++       ++    
Sbjct: 141 -EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKL 192

Query: 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG-PIYNNVPSIKRPFPELRIIDIS 571
           L  L+   N I            +L  L   SN      +            +L   D S
Sbjct: 193 LNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTEIDVTPL--------TQLTYFDCS 241

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
            N  T  L       L  +     D +++D  ++       + ++ ++       + L++
Sbjct: 242 VNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHN-------TQLIYFQAEGCRKIKELDV 293

Query: 632 F-----TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLS 686
                   +D        +   ++ +   L  L  ++  L  E+   ++  T L  L+  
Sbjct: 294 THNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 687 FNQL 690
              +
Sbjct: 348 NAHI 351

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  111 bits (280), Expect = 8e-26
 Identities = 64/316 (20%), Positives = 125/316 (39%), Gaps = 41/316 (12%)

Query: 258 VPASLSNLKQLTV-LNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLP-LSAFNLTQ 315
           +   L      ++  N   N  SG + D F    K  + +L   N    +  L    + Q
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 316 LSLLELSRNQFVGQLPCHASCLP--LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN 373
            S L+L+R      LP     LP  ++ L++  N L   +P          +L  LD  +
Sbjct: 61  FSELQLNRLNLS-SLP---DNLPPQITVLEITQNALI-SLPELP------ASLEYLDACD 109

Query: 374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
           N+L+         P E  +S  L+HLDV +N L  LP + +  + +++  +N+LT   P 
Sbjct: 110 NRLS-------TLP-ELPAS--LKHLDVDNNQLTMLPELPAL-LEYINADNNQLT-MLPE 157

Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL---- 489
              +L   E L++ NN L+  +P+   +   L  LD+  N    S+P +  + +      
Sbjct: 158 LPTSL---EVLSVRNNQLTF-LPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETE 209

Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549
           +     +N +   +P ++ +      + + +N ++ +    + +    Q        +  
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFS 267

Query: 550 PIYNNVPSIKRPFPEL 565
                  ++ RP  + 
Sbjct: 268 MSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (249), Expect = 5e-22
 Identities = 59/290 (20%), Positives = 99/290 (34%), Gaps = 43/290 (14%)

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS 279
             +   +  +    + + +  +     L L        +P +L    Q+TVL +  N   
Sbjct: 39  QALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI 93

Query: 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPL 339
              P++  +L  L          +  LP        L  L++  NQ    LP       L
Sbjct: 94  -SLPELPASLEYL---DACDNRLS-TLPEL---PASLKHLDVDNNQLT-MLP--ELPALL 142

Query: 340 SHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHL 399
            ++    N L   +P          +L  L + NN+LT         P E   S  L  L
Sbjct: 143 EYINADNNQL-TMLPELP------TSLEVLSVRNNQLT-------FLP-ELPES--LEAL 185

Query: 400 DVQSNLLQRLPFI------LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG 453
           DV +NLL+ LP +            F    +N++T   P +I +L     + L +N LS 
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 454 MIPQCLANFDSLSLLDLRKNQFR---GSIPQIFSKCYDLVALNLNDNELE 500
            I + L+   +       +  F    G    +     D V     +N+  
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 8e-19
 Identities = 58/358 (16%), Positives = 109/358 (30%), Gaps = 79/358 (22%)

Query: 360 LSTSENL-VELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQS----NLLQRLPFILS 414
           L  + N  +  +   N ++G             +  +     +        +  L   L 
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFS------AWDKWEKQALPGENRNEAVSLLKECLI 58

Query: 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
           ++   L ++   L+   P ++     I  L ++ N+L   +P+  A+   L  LD   N+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534
              ++P++ +    L  L++++N+L   LP   A    LE ++  NN++    P      
Sbjct: 112 LS-TLPELPAS---LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLP---ELP 159

Query: 535 PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGD 594
             L+VL +R+N         +P +      L  +D+S N    L PA   +         
Sbjct: 160 TSLEVLSVRNNQL-----TFLPEL---PESLEALDVSTNLLESL-PAVPVR--------- 201

Query: 595 NDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLS 654
                                                        NR    IP+ +  L 
Sbjct: 202 ------------------------------NHHSEETEIFFRCRENRITH-IPENILSLD 230

Query: 655 SLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNL 712
               +    N L   I   L+  TA    +           Q         D+     
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.9 bits (194), Expect = 3e-15
 Identities = 49/330 (14%), Positives = 100/330 (30%), Gaps = 40/330 (12%)

Query: 64  LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
           L++   +L L   +   + +  N     ++T L ++ +    + P   + L  L A D  
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNLPP--QITVLEITQNALISL-PELPASLEYLDACDNR 111

Query: 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR 183
                        + L +    L++L +DN Q  +++P     L       ++  N  L 
Sbjct: 112 ------------LSTLPELPASLKHLDVDNNQ-LTMLPELPALLE-----YINADNNQLT 153

Query: 184 GEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRD 243
              P        L  L++ +N L    LP       L  LD+S       +P        
Sbjct: 154 -MLPELPTS---LEVLSVRNNQL--TFLP--ELPESLEALDVSTNLLES-LPAVPVRNHH 204

Query: 244 LKFLDLYVCYFDGQ---VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHL 300
            +  +++    + +   +P ++ +L     + LEDN  S        +            
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPR 263

Query: 301 NFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNL 360
            +         N     L +     F        S +                 ++L  L
Sbjct: 264 IYFSMSDGQ-QNTLHRPLADAVTAWFPENKQ---SDVSQIWHAFEHEEHANTFSAFLDRL 319

Query: 361 STSENLVELDLSNNKLTGQIFQLDQWPVER 390
           S + +         ++   + +L      R
Sbjct: 320 SDTVSARNTSGFREQVAAWLEKLSASAELR 349

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  106 bits (267), Expect = 2e-25
 Identities = 58/279 (20%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 287 GNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA----SCLPLSHL 342
           G  S    +                    L  L +   +   ++   A        L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 343 KLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQ 402
            L    + G  P  L   +   +L  L+L N     +   L +          L+ L + 
Sbjct: 101 TLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPG--LKVLSIA 157

Query: 403 SNLLQRLPFILSSR---IRFLSVSDNKLTGE--FPSSIC--NLSTIEYLNLSNN---SLS 452
                            +  L +SDN   GE    S++C     T++ L L N    + S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQI-FSKCYDLVALNLNDNELEGKLPPSLANCG 511
           G+     A    L  LDL  N  R +           L +LNL+   L+ ++P  L    
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA-- 274

Query: 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP 550
            L VLD+  N+++   P     LP++  L L+ N F   
Sbjct: 275 KLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.8 bits (233), Expect = 5e-21
 Identities = 53/288 (18%), Positives = 93/288 (32%), Gaps = 29/288 (10%)

Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
           +L     +L  L L  +     +GQ       L L  L +    +  RI      +    
Sbjct: 37  ELYGGGRSLEYL-LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSS-------RI 417
            L EL L N ++TG        P+   +  +L  L++++         L+         +
Sbjct: 96  GLQELTLENLEVTGTAP----PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP----QCLANFDSLSLLDLRKN 473
           + LS++           +     +  L+LS+N   G        C   F +L +L LR  
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 474 QFR---GSIPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNNKINDAFPY 529
                 G    + +    L  L+L+ N L              L  L++    +      
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK- 270

Query: 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTG 577
                 +L VL L  N       +  PS     P++  + +  N F  
Sbjct: 271 --GLPAKLSVLDLSYNRL-----DRNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 5e-18
 Identities = 51/336 (15%), Positives = 96/336 (28%), Gaps = 75/336 (22%)

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVS 423
           +L  L    +         D      +  + +R   + S +L     +L  S ++ L++ 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 424 DNKLTGEFPSSI--CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
           + ++TG  P  +       +  LNL N S +      LA         L+          
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKV--------- 153

Query: 482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTA----TLPRL 537
                     L++            +     L  LD+ +N         +A      P L
Sbjct: 154 ----------LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDD 597
           QVL LR+            ++     +L+ +D+S N       A        +       
Sbjct: 204 QVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL------- 255

Query: 598 IDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLK 657
                                               +++LS    + +     G  + L 
Sbjct: 256 -----------------------------------NSLNLSFTGLKQVPK---GLPAKLS 277

Query: 658 LLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGP 693
           +L+ S+N L    P     L  +  L+L  N  +  
Sbjct: 278 VLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 59/276 (21%), Positives = 97/276 (35%), Gaps = 27/276 (9%)

Query: 120 LDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSAS-LISLSLG 178
           L+       T+ +   F ++ K+L+ L+ L +   ++ S +    L +   S L  L+L 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 179 NCFLRGEFPIDIF--HFPFLRQLTLSDNGLLTGNLPTSNWSSP----LRILDLSITKFSG 232
           N  + G  P  +     P L  L L +    T +   +         L++L ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 233 KIPDTIGNLRDLKFLDLYVCYFDGQ-------VPASLSNLKQLTVLNLEDNQFSGEFPDV 285
              + +     L  LDL      G+        P     L+ L + N      SG    +
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 286 FGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLP--LSHL 342
                +L  + L+H +        +    +QL+ L LS      Q+P     LP  LS L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP---KGLPAKLSVL 279

Query: 343 KLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378
            L  N LD R PS          +  L L  N    
Sbjct: 280 DLSYNRLD-RNPS----PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 17/213 (7%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGT-KISSNFGQF--TKLTHLNLSFS 101
           L L +  + GT  P         L  LNL    +       +   Q+    L  L+++ +
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 102 YFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQM--FSV 159
           +       Q+     L  LDL SD P                  L+ L L N  M   S 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDL-SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 160 VPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF-LRQLTLSDNGL--LTGNLPTSNW 216
           V S+L       L  L L +  LR         +P  L  L LS  GL  +   LP    
Sbjct: 219 VCSALAAARV-QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK-- 275

Query: 217 SSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249
              L +LDLS  +     P     L  +  L L
Sbjct: 276 ---LSVLDLSYNRLDR-NPS-PDELPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 37/214 (17%), Positives = 67/214 (31%), Gaps = 27/214 (12%)

Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTA---TLPRLQVLVLRSNSFH 548
           L   D E +      +     L+ L V   +I     +       +  LQ L L +    
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 549 GPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY 608
           G      P ++   P+L I+++    +       +   L+  +      + +   +S   
Sbjct: 109 GTA--PPPLLEATGPDLNILNLRNVSWATRDA--WLAELQQWLKPGLKVLSIAQAHS--- 161

Query: 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKE----VGKLSSLKLLNFSHN 664
                          E  RV    +T+DLS+N   G           K  +L++L   + 
Sbjct: 162 ----------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 665 ILR---GEIPVELTSLTALSVLNLSFNQLVGPIP 695
            +    G       +   L  L+LS N L     
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (261), Expect = 2e-24
 Identities = 66/326 (20%), Positives = 128/326 (39%), Gaps = 52/326 (15%)

Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQL 316
           VP  L       +L+L++N+ +      F NL  L  + L + N   ++   AF  L +L
Sbjct: 46  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKL 102

Query: 317 SLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSNN 374
             L LS+NQ   +LP        L  L++  N +  ++   +F  L+    ++ ++L  N
Sbjct: 103 ERLYLSKNQLK-ELP--EKMPKTLQELRVHENEI-TKVRKSVFNGLN---QMIVVELGTN 155

Query: 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS 434
            L                        +++   Q +      ++ ++ ++D  +T   P  
Sbjct: 156 PLK--------------------SSGIENGAFQGMK-----KLSYIRIADTNIT-TIPQG 189

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
           +    ++  L+L  N ++ +    L   ++L+ L L  N          +    L  L+L
Sbjct: 190 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKI----NDAF--PYWTATLPRLQVLVLRSNSFH 548
           N+N+L  K+P  LA+   ++V+ + NN I    ++ F  P +         + L SN   
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 549 GPIYNNV-PSIKRPFPELRIIDISRN 573
              Y  + PS  R       + +   
Sbjct: 307 ---YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 58/320 (18%), Positives = 97/320 (30%), Gaps = 42/320 (13%)

Query: 73  LACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPR 128
           + C+D    K+  +         L+L  +  + I       L  L  L L     S I  
Sbjct: 36  VQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 129 TKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPI 188
             F           L +L  L L   Q+   +P  +      +L  L +    +  +   
Sbjct: 94  GAF---------APLVKLERLYLSKNQL-KELPEKMP----KTLQELRVHENEIT-KVRK 138

Query: 189 DIF-HFPFLRQLTLSDNGLLTGNLPTSNWS--SPLRILDLSITKFSGKIPDTIGNLRDLK 245
            +F     +  + L  N L +  +    +     L  + ++ T  +  IP   G    L 
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLT 195

Query: 246 FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ 305
            L L          ASL  L  L  L L  N  S        N   L  + L +     +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 306 LPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP--------LSHLKLGGNFL-DGRIPSW 356
           +P    +   + ++ L  N     +  +  C P         S + L  N +    I   
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 357 LF-NLSTSENLVELDLSNNK 375
            F  +        + L N K
Sbjct: 314 TFRCVY---VRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 52/299 (17%), Positives = 100/299 (33%), Gaps = 58/299 (19%)

Query: 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
            LR +      L+++P  L      L + +NK+T        NL  +  L L NN +S +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCGDL 513
            P   A    L  L L KNQ +    ++      L  L +++NE+  K+          +
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQM 147

Query: 514 EVLDVGNNKINDAF--PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
            V+++G N +  +         + +L  + +   +        +P  +   P L  + + 
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIP--QGLPPSLTELHLD 200

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
            N  T  + A   + L  +                                         
Sbjct: 201 GNKITK-VDAASLKGLNNL----------------------------------------- 218

Query: 632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
              + LS N    +    +     L+ L+ ++N L  ++P  L     + V+ L  N +
Sbjct: 219 -AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 64/299 (21%), Positives = 101/299 (33%), Gaps = 63/299 (21%)

Query: 67  HLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS-- 123
               L+L  N    T+I    F     L  L L  +  S I P   + L KL  L LS  
Sbjct: 53  DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 124 --SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG-NC 180
              ++P           + K L ELR   +   ++  V  S    L+   +I + LG N 
Sbjct: 111 QLKELP---------EKMPKTLQELR---VHENEITKVRKSVFNGLNQ--MIVVELGTNP 156

Query: 181 FLRGEFPIDIF-HFPFLRQLTLSDNGL--LTGNLPTSNWSSPLRILDLS---ITK----- 229
                     F     L  + ++D  +  +   LP S     L  L L    ITK     
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS-----LTELHLDGNKITKVDAAS 211

Query: 230 FSG------------KI----PDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
             G             I      ++ N   L+ L L       +VP  L++ K + V+ L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 274 EDNQFS----GEF--PDVFGNLSKLTRISLAHLNFT-GQLPLSAF-NLTQLSLLELSRN 324
            +N  S     +F  P      +  + +SL        ++  S F  +   + ++L   
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 8e-24
 Identities = 72/332 (21%), Positives = 126/332 (37%), Gaps = 65/332 (19%)

Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQL 316
           VP  +S     T+L+L++N  S    D F  L  L  + L + N   ++   AF  L +L
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKL 104

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
             L +S+N  V                         IP  L       +LVEL + +N++
Sbjct: 105 QKLYISKNHLV------------------------EIPPNLP-----SSLVELRIHDNRI 135

Query: 377 T---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSS----RIRFLSVSDNKLTG 429
                 +F              +  +++  N L+   F   +    ++ +L +S+ KLT 
Sbjct: 136 RKVPKGVFS---------GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT- 185

Query: 430 EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL 489
             P  +    T+  L+L +N +  +  + L  +  L  L L  NQ R       S    L
Sbjct: 186 GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI----NDAFPY--WTATLPRLQVLVLR 543
             L+L++N+L  ++P  L +   L+V+ +  N I     + F    +         + L 
Sbjct: 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 544 SNSFHGPI-YNNV-PSIKRPFPELRIIDISRN 573
           +N    P+ Y  V P+  R   +   I     
Sbjct: 303 NN----PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (253), Expect = 2e-23
 Identities = 69/346 (19%), Positives = 126/346 (36%), Gaps = 66/346 (19%)

Query: 195 FLRQLTLSDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVC 252
            LR +  SD GL      +          +LDL     S ++                  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPD-----TTLLDLQNNDIS-ELR----------------- 70

Query: 253 YFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF- 311
                       L+ L  L L +N+ S      F  L KL ++ ++  +   ++P +   
Sbjct: 71  ------KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS 123

Query: 312 NLTQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFL-DGRIPSWLFNLSTSENLVE 368
           +L +L    +  N+   ++P    S L  ++ +++GGN L +       F+      L  
Sbjct: 124 SLVELR---IHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNY 176

Query: 369 LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDN 425
           L +S  KLTG         + +     L  L +  N +Q +     +  S++  L +  N
Sbjct: 177 LRISEAKLTG---------IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 426 KLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP----- 480
           ++      S+  L T+  L+L NN LS  +P  L +   L ++ L  N     +      
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 481 --QIFSKCYDLVALNLNDNELE-GKLPPSLANC-GDLEVLDVGNNK 522
                 K      ++L +N +   ++ P+   C  D   +  GN K
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 8e-20
 Identities = 60/326 (18%), Positives = 101/326 (30%), Gaps = 66/326 (20%)

Query: 67  HLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS-- 123
               L+L  ND   +++  + F     L  L L  +  S I     S L KL  L +S  
Sbjct: 55  DTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 124 --SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLG-NC 180
              +IP          NL  +L ELR   + + ++  V       L   ++  + +G N 
Sbjct: 113 HLVEIP---------PNLPSSLVELR---IHDNRIRKVPKGVFSGLR--NMNCIEMGGNP 158

Query: 181 FLRGEFPIDIFHFPFLRQLTLSDNGL--LTGNLPTSNWSSPLRILDLSITKFSGKIPDTI 238
                F    F    L  L +S+  L  +  +LP +     L  L L   K    I    
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET-----LNELHLDHNKIQ-AIE--- 209

Query: 239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298
                                  L    +L  L L  NQ           L  L  + L 
Sbjct: 210 --------------------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 299 HLNFTGQLPLSAFNLTQLSLLELSRNQFV-------GQLPCHASCLPLSHLKLGGNFLD- 350
           +   + ++P    +L  L ++ L  N            +         + + L  N +  
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 351 GRIPSWLF-NLSTSENLVELDLSNNK 375
             +    F  ++   + + +   N K
Sbjct: 309 WEVQPATFRCVT---DRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 8e-19
 Identities = 50/298 (16%), Positives = 95/298 (31%), Gaps = 57/298 (19%)

Query: 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
            LR +      L+ +P  +S     L + +N ++         L  +  L L NN +S +
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCGDL 513
             +  +    L  L + KN      P + S    LV L ++DN +  K+P    +   ++
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNM 149

Query: 514 EVLDVGNNKI-NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR 572
             +++G N + N  F        +L  L +            +P  K     L  + +  
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-----GIP--KDLPETLNELHLDH 202

Query: 573 NGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIF 632
           N     +          +                                          
Sbjct: 203 NKIQ-AIELEDLLRYSKL------------------------------------------ 219

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
             + L +N+   +    +  L +L+ L+  +N L   +P  L  L  L V+ L  N +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 52/291 (17%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           L L ++  +  +H       L  LQKL ++ N     +I       + L  L +  +   
Sbjct: 83  LVLVNN-KISKIHEK-AFSPLRKLQKLYISKNHL--VEIPP--NLPSSLVELRIHDNRIR 136

Query: 105 GIVPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSS 163
            +     S L  +  +++    +  + FE   F+ L     +L YL +   +  + +P  
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-----KLNYLRISEAK-LTGIPKD 190

Query: 164 LLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI 222
           L      +L  L L +  ++    ++    +  L +L L  N               +R+
Sbjct: 191 LP----ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN--------------QIRM 231

Query: 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS--- 279
           ++            ++  L  L+ L L       +VPA L +LK L V+ L  N  +   
Sbjct: 232 IE----------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 280 -GEFPDV--FGNLSKLTRISLAHLNFT-GQLPLSAF-NLTQLSLLELSRNQ 325
             +F  V      +    ISL +      ++  + F  +T    ++    +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 58/289 (20%), Positives = 104/289 (35%), Gaps = 43/289 (14%)

Query: 193 FPFLRQLTLSDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLY 250
                ++  +  GL      +P++      R L+L          DT  +L  L+ L L 
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSN-----TRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 251 VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSA 310
                     + + L  L  L L DN  +      F  LSKL  + L +      +P  A
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 311 F-NLTQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLV 367
           F  +  L  L+L   + +  +   A   L  L +L LG   +   +P+ L  L     L 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLV---GLE 221

Query: 368 ELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL 427
           EL++S N                         +++      L       ++ L V ++++
Sbjct: 222 ELEMSGNHFP----------------------EIRPGSFHGLS-----SLKKLWVMNSQV 254

Query: 428 TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476
           +    ++   L+++  LNL++N+LS +          L  L L  N + 
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 6e-21
 Identities = 61/298 (20%), Positives = 98/298 (32%), Gaps = 68/298 (22%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315
           +VP  +        LNL +N       D F +L  L  + L   N   Q+ + AF  L  
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLAS 124

Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
           L+ LEL  N              L+ +                 LS    L EL L NN 
Sbjct: 125 LNTLELFDNW-------------LTVIP----------SGAFEYLS---KLRELWLRNNP 158

Query: 376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD-NKLTGEFPSS 434
           +                        + S    R+P      +  L + +  KL      +
Sbjct: 159 IE----------------------SIPSYAFNRVP-----SLMRLDLGELKKLEYISEGA 191

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
              L  ++YLNL   ++   +P  L     L  L++  N F    P  F     L  L +
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
            ++++      +      L  L++ +N +    +D F      L  L  L L  N ++
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF----TPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 61/264 (23%), Positives = 97/264 (36%), Gaps = 20/264 (7%)

Query: 69  QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIP 127
           Q   + C     +++       +   +LNL  +    I       L  L  L L    I 
Sbjct: 55  QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI- 111

Query: 128 RTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFP 187
             + E   FN     L  L  L L +  +  +   +   LS   L  L L N  +    P
Sbjct: 112 -RQIEVGAFN----GLASLNTLELFDNWLTVIPSGAFEYLS--KLRELWLRNNPIE-SIP 163

Query: 188 IDIFHF-PFLRQLTLSDNGLLTGNLPTSNWS--SPLRILDLSITKFSGKIPDTIGNLRDL 244
              F+  P L +L L +   L   +    +     L+ L+L +      +P  +  L  L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGL 220

Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
           + L++   +F    P S   L  L  L + ++Q S    + F  L+ L  ++LAH N + 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS- 279

Query: 305 QLPLSAF-NLTQLSLLELSRNQFV 327
            LP   F  L  L  L L  N + 
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 60/306 (19%), Positives = 104/306 (33%), Gaps = 62/306 (20%)

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
           S +   +      L  +P  + S  R+L++ +N +      +  +L  +E L L  NS+ 
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCG 511
            +         SL+ L+L  N         F     L  L L +N +E  +P  +     
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP 171

Query: 512 DLEVLDVG-NNKI----NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELR 566
            L  LD+G   K+      AF      L  L+ L L   +       ++P++  P   L 
Sbjct: 172 SLMRLDLGELKKLEYISEGAF----EGLFNLKYLNLGMCNIK-----DMPNL-TPLVGLE 221

Query: 567 IIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEME 626
            +++S N F   +    F  L ++                                    
Sbjct: 222 ELEMSGNHFPE-IRPGSFHGLSSL------------------------------------ 244

Query: 627 RVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVE-LTSLTALSVLNL 685
                   + + N++   +       L+SL  LN +HN L   +P +  T L  L  L+L
Sbjct: 245 ------KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

Query: 686 SFNQLV 691
             N   
Sbjct: 298 HHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLS-FSY 102
           L+L  +  L  +        L  L++L L  N      I S  F +   L  L+L     
Sbjct: 128 LELFDN-WLTVIPSG-AFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKK 183

Query: 103 FSGIVPSQISRLSKLVALDLS----SDIPR-----------------TKFEQHTFNNLAK 141
              I       L  L  L+L      D+P                   +    +F     
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF----H 239

Query: 142 NLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLT 200
            L+ L+ L + N Q+  +  ++   L+  SL+ L+L +  L    P D+F    +L +L 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLA--SLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

Query: 201 LSDN 204
           L  N
Sbjct: 297 LHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 6e-21
 Identities = 58/289 (20%), Positives = 105/289 (36%), Gaps = 43/289 (14%)

Query: 193 FPFLRQLTLSDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLY 250
                ++      L      + T+      R+L+L   +      ++  +LR L+ L L 
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTN-----TRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 251 VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSA 310
             +       + + L  L  L L DN+ +      F  LSKL  + L +      +P  A
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 311 F-NLTQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLV 367
           F  +  L  L+L   + +  +   A   L  L +L L    L   IP+ L  L     L 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI---KLD 210

Query: 368 ELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL 427
           ELDLS N L+                       ++    Q L       ++ L +  +++
Sbjct: 211 ELDLSGNHLSA----------------------IRPGSFQGLM-----HLQKLWMIQSQI 243

Query: 428 TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476
                ++  NL ++  +NL++N+L+ +          L  + L  N + 
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 64/298 (21%), Positives = 106/298 (35%), Gaps = 68/298 (22%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315
           +VP  +S      +LNL +NQ      + F +L  L  + L+  N    + + AF  L  
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLAN 113

Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
           L+ LEL  N+             L+ +                 LS    L EL L NN 
Sbjct: 114 LNTLELFDNR-------------LTTIP----------NGAFVYLS---KLKELWLRNNP 147

Query: 376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD-NKLTGEFPSS 434
           +                        + S    R+P      +R L + +  +L+     +
Sbjct: 148 IE----------------------SIPSYAFNRIP-----SLRRLDLGELKRLSYISEGA 180

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494
              LS + YLNL+  +L   IP  L     L  LDL  N      P  F     L  L +
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 495 NDNELEGKLPPSLANCGDLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
             ++++     +  N   L  +++ +N +    +D F      L  L+ + L  N ++
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF----TPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 68/269 (25%), Positives = 96/269 (35%), Gaps = 36/269 (13%)

Query: 69  QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----S 124
           Q   + C   N  ++       T    LNL  +    I  +    L  L  L LS     
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
            I    F           L  L  L L + ++ ++   + + LS   L  L L N  +  
Sbjct: 102 TIEIGAFN---------GLANLNTLELFDNRLTTIPNGAFVYLS--KLKELWLRNNPIE- 149

Query: 185 EFPIDIFHF-PFLRQLTLSDNGLLT-------GNLPTSNWSSPLRILDLSITKFSGKIPD 236
             P   F+  P LR+L L +   L+         L        LR L+L++     +IP 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN------LRYLNLAMCNLR-EIP- 201

Query: 237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRIS 296
            +  L  L  LDL   +     P S   L  L  L +  +Q      + F NL  L  I+
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 297 LAHLNFTGQLPLSAF-NLTQLSLLELSRN 324
           LAH N T  LP   F  L  L  + L  N
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 62/304 (20%)

Query: 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
           +   +      L+ +P  +S+  R L++ +N++     +S  +L  +E L LS N +  +
Sbjct: 44  QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDL 513
                    +L+ L+L  N+        F     L  L L +N +E  +P         L
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSL 162

Query: 514 EVLDVG-NNKI----NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRII 568
             LD+G   ++      AF      L  L+ L L   +        +P++  P  +L  +
Sbjct: 163 RRLDLGELKRLSYISEGAF----EGLSNLRYLNLAMCNLR-----EIPNL-TPLIKLDEL 212

Query: 569 DISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERV 628
           D+S N  +  +    FQ L  +                                      
Sbjct: 213 DLSGNHLSA-IRPGSFQGLMHL-------------------------------------- 233

Query: 629 LNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVE-LTSLTALSVLNLSF 687
                 + +  ++ + +       L SL  +N +HN L   +P +  T L  L  ++L  
Sbjct: 234 ----QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

Query: 688 NQLV 691
           N   
Sbjct: 289 NPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 56/256 (21%), Positives = 81/256 (31%), Gaps = 61/256 (23%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           L LS +  + T+        L +L  L L  N    T I +  F   +KL  L L  +  
Sbjct: 93  LQLSRN-HIRTIEIG-AFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPI 148

Query: 104 SGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSS 163
             I     +R+  L  LDL      +   +  F    + L+ LRYL L        +P +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF----EGLSNLRYLNLAMCN-LREIP-N 202

Query: 164 LLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRIL 223
           L  L                            L +L LS N               L  +
Sbjct: 203 LTPLIK--------------------------LDELDLSGN--------------HLSAI 222

Query: 224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFP 283
                      P +   L  L+ L +           +  NL+ L  +NL  N  +    
Sbjct: 223 R----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 284 DVFGNLSKLTRISLAH 299
           D+F  L  L RI L H
Sbjct: 273 DLFTPLHHLERIHLHH 288

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 39/274 (14%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH--LNFTGQLPLSAFNLT 314
            VP  +      T L LE N+       VF  L++LT++SL+   L+F G    S F  T
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 315 QLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLS 372
            L  L+LS N  V  +  +   L  L HL    + L       +F +L    NL+ LD+S
Sbjct: 79  SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDIS 134

Query: 373 NNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432
           +                             + +   L       +  L ++ N     F 
Sbjct: 135 HTHTR----------------------VAFNGIFNGLS-----SLEVLKMAGNSFQENFL 167

Query: 433 SSI-CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
             I   L  + +L+LS   L  + P    +  SL +L++  N F       +     L  
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 492 LNLNDNELEGKLPPSLAN-CGDLEVLDVGNNKIN 524
           L+ + N +       L +    L  L++  N   
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 64/302 (21%), Positives = 106/302 (35%), Gaps = 51/302 (16%)

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
           S     +   S  L  +P  + S    L +  NKL          L+ +  L+LS+N LS
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 453 --GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL-AN 509
             G   Q      SL  LDL  N    ++   F     L  L+   + L+     S+  +
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 510 CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID 569
             +L  LD+ +     AF      L  L+VL +  NSF      ++         L  +D
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLD 181

Query: 570 ISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL 629
           +S+      L    F SL ++                                       
Sbjct: 182 LSQCQLEQ-LSPTAFNSLSSL--------------------------------------- 201

Query: 630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSL-TALSVLNLSFN 688
                +++S+N F  +       L+SL++L++S N +      EL    ++L+ LNL+ N
Sbjct: 202 ---QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 689 QL 690
             
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 56/263 (21%), Positives = 93/263 (35%), Gaps = 27/263 (10%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQ 133
           CN    T + +     +  T L L  +    +      +L++L  L LSS  +       
Sbjct: 14  CNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71

Query: 134 HTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-H 192
            +        T L+YL L    +   + S+ L L    L  L   +  L+      +F  
Sbjct: 72  QSD----FGTTSLKYLDLSFNGV-ITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLS 124

Query: 193 FPFLRQLTLSDNGLLT------GNLPTSNWSSPLRILDLSITKFSGKI-PDTIGNLRDLK 245
              L  L +S              L +      L +L ++   F     PD    LR+L 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSS------LEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 246 FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ 305
           FLDL  C  +   P + ++L  L VLN+  N F       +  L+ L  +  +  +    
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 306 LPLSAFN--LTQLSLLELSRNQF 326
                     + L+ L L++N F
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSF-SY 102
           LD   S  L  +   S    L +L  L+++          +  F   + L  L ++  S+
Sbjct: 106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 103 FSGIVPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVP 161
               +P   + L  L  LDLS   +   +     FN    +L+ L+ L + +   FS+  
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFN----SLSSLQVLNMSHNNFFSLDT 216

Query: 162 SSLLNLSSASLISLSLGNCFLRGEFPIDIFH--FPFLRQLTLSDN 204
                L+  SL  L      +               L  L L+ N
Sbjct: 217 FPYKCLN--SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.6 bits (237), Expect = 2e-20
 Identities = 44/242 (18%), Positives = 85/242 (35%), Gaps = 23/242 (9%)

Query: 312 NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDL 371
              +     L +   V           +  +    + +       +  +    N+ +L L
Sbjct: 19  AFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFL 72

Query: 372 SNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGE 430
           + NKLT  I  L            L  L +  N ++ L  +    +++ LS+  N ++  
Sbjct: 73  NGNKLT-DIKPLTNLK-------NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD- 123

Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
             + + +L  +E L L NN ++ +    L+    L  L L  NQ    I    +    L 
Sbjct: 124 -INGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQ 178

Query: 491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP 550
            L L+ N +   L   LA   +L+VL++ + +  +      + L     +     S   P
Sbjct: 179 NLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 551 IY 552
             
Sbjct: 237 EI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 5e-18
 Identities = 40/223 (17%), Positives = 84/223 (37%), Gaps = 29/223 (13%)

Query: 357 LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-S 415
           +F        ++ +L    +T      ++          +  +   ++ ++ +  I    
Sbjct: 14  IFPDDAFAETIKDNLKKKSVT-DAVTQNELN-------SIDQIIANNSDIKSVQGIQYLP 65

Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
            +  L ++ NKLT   P  + NL  + +L L  N +  +    L +   L  L L  N  
Sbjct: 66  NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI 121

Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
              I  +      L +L L +N++   +   L+    L+ L + +N+I+D  P   A L 
Sbjct: 122 S-DINGL-VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPL--AGLT 175

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIK--RPFPELRIIDISRNGFT 576
           +LQ L L          N++  ++       L ++++      
Sbjct: 176 KLQNLYLS--------KNHISDLRALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 7e-13
 Identities = 56/327 (17%), Positives = 95/327 (29%), Gaps = 54/327 (16%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
                K NL          +    +   +  +  + S    +    I  L  +  L L+ 
Sbjct: 20  FAETIKDNL---KKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN- 73

Query: 125 DIPRTKFEQHTFNNLA-----KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGN 179
                       N L       NL  L +L LD  ++  +  SSL +L    L SLSL +
Sbjct: 74  -----------GNKLTDIKPLTNLKNLGWLFLDENKIKDL--SSLKDLKK--LKSLSLEH 118

Query: 180 CFLRGEFPIDIFHFPFLRQLTLSDNGLLT----GNLPTSNWSSPLRILDLS---ITKFSG 232
             +     +   H P L  L L +N +        L        L  L L    I+    
Sbjct: 119 NGISDINGLV--HLPQLESLYLGNNKITDITVLSRLTK------LDTLSLEDNQISDIVP 170

Query: 233 KIPDTIGNLRDLKFLDLYVCYFDGQVP--ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS 290
                +  L  L+ L L        +    +L+ LK L VL L   +   +  +   NL 
Sbjct: 171 -----LAGLTKLQNLYLS----KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 291 KLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350
               +     +      +S  +        +  +                 +        
Sbjct: 222 VPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

Query: 351 GRIPSWLFNLSTSENLVELDLSNNKLT 377
           GR+   L  + T    V+  +   K+ 
Sbjct: 280 GRVTQPLKEVYTVSYDVDGTVIKTKVE 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 54/279 (19%), Positives = 96/279 (34%), Gaps = 25/279 (8%)

Query: 210 NLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT 269
            L  +     ++ LDLS  + +      +    +L+ L L     +     S S+L  L 
Sbjct: 49  GLTEA-----VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVG 328
            L+L  N  S      F  LS LT ++L    +      S F +LT+L +L +       
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 329 QLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT---GQIFQL 383
           ++          L  L++  + L    P  L ++    N+  L L   +          +
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ---NVSHLILHMKQHILLLEIFVDV 220

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLP------FILSSRIRFLSVSDNKLTGEFPSSICN 437
                  +  +ELR  D+ +     L        I     R + ++D  L  +    +  
Sbjct: 221 ----TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476
           +S +  L  S N L  +         SL  + L  N + 
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 56/313 (17%), Positives = 102/313 (32%), Gaps = 46/313 (14%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQ 133
            +  +   I S       +  L+LS +  + I  S + R   L AL L+S  I     E+
Sbjct: 38  GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEE 93

Query: 134 HTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-H 192
            +F+    +L  L +L L    + ++  S    LS  SL  L+L     +      +F H
Sbjct: 94  DSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLS--SLTFLNLLGNPYKTLGETSLFSH 147

Query: 193 FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVC 252
              L+ L + +    T  +                             L  L+ L++   
Sbjct: 148 LTKLQILRVGNMDTFT-KIQ----------------------RKDFAGLTFLEELEIDAS 184

Query: 253 YFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG----QLPL 308
                 P SL +++ ++ L L   Q            S +  + L   +       +L  
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 309 SAFN----LTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
              N          ++++       +        L  L+   N L   +P  +F+  TS 
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTS- 302

Query: 365 NLVELDLSNNKLT 377
            L ++ L  N   
Sbjct: 303 -LQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 54/313 (17%), Positives = 105/313 (33%), Gaps = 56/313 (17%)

Query: 107 VPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLL 165
           +PS ++    + +LDLS+  I  T           +    L+ L+L +  + ++   S  
Sbjct: 46  IPSGLT--EAVKSLDLSNNRI--TYISNSDL----QRCVNLQALVLTSNGINTIEEDSFS 97

Query: 166 NLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILD 224
           +L S  L  L L   +L        F     L  L L  N   T  L  ++  S L  L 
Sbjct: 98  SLGS--LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQ 152

Query: 225 LSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD 284
           +            +GN+     +               + L  L  L ++ +      P 
Sbjct: 153 I----------LRVGNMDTFTKIQ----------RKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 285 VFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVG----QLPCHAS---- 335
              ++  ++ + L        L        + +  LEL           +L    +    
Sbjct: 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 336 -CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394
                 ++K+    L  ++   L  +S    L+EL+ S N+L      +     +R++S 
Sbjct: 252 KKFTFRNVKITDESL-FQVMKLLNQIS---GLLELEFSRNQLKS----VPDGIFDRLTS- 302

Query: 395 ELRHLDVQSNLLQ 407
            L+ + + +N   
Sbjct: 303 -LQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 31/258 (12%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           L L+S+ +  T+  + +   L  L+ L+L+ N    + +SS+ F   + LT LNL  + +
Sbjct: 81  LVLTSNGI-NTIEED-SFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 104 SGIVPSQI-SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPS 162
             +  + + S L+KL  L + +    TK ++  F      LT L  L +D   + S  P 
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF----AGLTFLEELEIDASDLQSYEPK 192

Query: 163 SLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSPLR 221
           SL ++ +  +  L L                   +  L L D  L T +           
Sbjct: 193 SLKSIQN--VSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHF---------- 239

Query: 222 ILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE 281
                 ++ S    +++      + + +       QV   L+ +  L  L    NQ    
Sbjct: 240 ------SELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSV 292

Query: 282 FPDVFGNLSKLTRISLAH 299
              +F  L+ L +I L  
Sbjct: 293 PDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 59/297 (19%), Positives = 110/297 (37%), Gaps = 26/297 (8%)

Query: 398 HLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ 457
                S  L  +P  L+  ++ L +S+N++T    S +     ++ L L++N ++ +   
Sbjct: 35  ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 458 CLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVL 516
             ++  SL  LDL  N         F     L  LNL  N  +     SL ++   L++L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 517 DVGNNKI-----NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
            VGN           F    A L  L+ L + ++     + +  P   +    +  + + 
Sbjct: 155 RVGNMDTFTKIQRKDF----AGLTFLEELEIDAS----DLQSYEPKSLKSIQNVSHLILH 206

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
                 LL   +     ++   +  D DLD  +        S + T    +         
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHF-------SELST---GETNSLIKKFT 255

Query: 632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
           F  + +++      + K + ++S L  L FS N L+         LT+L  + L  N
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 48/317 (15%), Positives = 102/317 (32%), Gaps = 65/317 (20%)

Query: 363 SENLVELDLSNNKLT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSR 416
           +E +  LDLSNN++T       Q           V L+ L + SN +  +    F     
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQ---------RCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ-CLANFDSLSLLDLRKNQF 475
           +  L +S N L+    S    LS++ +LNL  N    +      ++   L +L +     
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 476 RGSIP-QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534
              I  + F+    L  L ++ ++L+   P SL +  ++  L +   +       +    
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 535 PRLQVLVLRSNSFHGPIYNNVPSIK----RPFPELRIIDISRNGFTGLLPARYFQSLKAM 590
             ++ L LR        ++ + + +          R + I+      ++       +  +
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGL 279

Query: 591 MHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV 650
                                                       ++ S N+ + +     
Sbjct: 280 ------------------------------------------LELEFSRNQLKSVPDGIF 297

Query: 651 GKLSSLKLLNFSHNILR 667
            +L+SL+ +    N   
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 42/283 (14%), Positives = 81/283 (28%), Gaps = 62/283 (21%)

Query: 419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS 478
               S   L    PS +     ++ L+LSNN ++ +    L    +L  L L  N     
Sbjct: 35  ICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 479 IPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNNKINDAFPY-WTATLPR 536
               FS    L  L+L+ N L   L  S       L  L++  N           + L +
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 537 LQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDND 596
           LQ+L + +      I     +       L  ++I  +        +  +S++ +      
Sbjct: 151 LQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDASDLQSY-EPKSLKSIQNV------ 200

Query: 597 DIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-GKLSS 655
                                               + + L   +   ++ +      SS
Sbjct: 201 ------------------------------------SHLILHMKQHI-LLLEIFVDVTSS 223

Query: 656 LKLLNFSHNILRGEIPVELTS--------LTALSVLNLSFNQL 690
           ++ L      L      EL++              + ++   L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 78/260 (30%)

Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
           +  +         S+ SL+  IP  L   +++  LDL  N+          +C +L AL 
Sbjct: 26  ASLSCDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALV 82

Query: 494 LNDNELEGKLPP-SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIY 552
           L  N +   +   S ++ G LE LD+  N +++                L S+ F     
Sbjct: 83  LTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN----------------LSSSWFKP--- 122

Query: 553 NNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY 612
                       L  +++  N +  L     F  L  +                      
Sbjct: 123 ---------LSSLTFLNLLGNPYKTLGETSLFSHLTKLQI-------------------- 153

Query: 613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-GKLSSLKLLNFSHNILRGEIP 671
                                 + + N      I ++    L+ L+ L    + L+    
Sbjct: 154 ----------------------LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYE 190

Query: 672 VE-LTSLTALSVLNLSFNQL 690
            + L S+  +S L L   Q 
Sbjct: 191 PKSLKSIQNVSHLILHMKQH 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 51/250 (20%), Positives = 83/250 (33%), Gaps = 44/250 (17%)

Query: 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLT 293
           +P  I      + + L+         AS    + LT+L L  N  +      F  L+ L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 294 RISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGR 352
           ++ L+       +  + F  L +L  L L R               L  L          
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-------------LQELG--------- 121

Query: 353 IPSWLFNLSTSENLVELDLSNNKLT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRL 409
            P     L+    L  L L +N L       F+             L HL +  N +  +
Sbjct: 122 -PGLFRGLA---ALQYLYLQDNALQALPDDTFR---------DLGNLTHLFLHGNRISSV 168

Query: 410 P---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLS 466
           P   F     +  L +  N++    P +  +L  +  L L  N+LS +  + LA   +L 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 467 LLDLRKNQFR 476
            L L  N + 
Sbjct: 229 YLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 53/235 (22%), Positives = 79/235 (33%), Gaps = 16/235 (6%)

Query: 69  QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIP 127
            K+  +C       +            + L  +  S +  +       L  L L S  + 
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL- 68

Query: 128 RTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFP 187
             + +   F  L   L +L   L DN Q+ SV P++   L    L +L L  C L+ E  
Sbjct: 69  -ARIDAAAFTGL-ALLEQLD--LSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQ-ELG 121

Query: 188 IDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSP--LRILDLSITKFSGKIPDTIGNLRDL 244
             +F     L+ L L DN L    LP   +     L  L L   + S         L  L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299
             L L+        P +  +L +L  L L  N  S    +    L  L  + L  
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 339 LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT---GQIFQLDQWPVERISSVE 395
              + L GN +   +P+  F      NL  L L +N L       F              
Sbjct: 34  SQRIFLHGNRI-SHVPAASF--RACRNLTILWLHSNVLARIDAAAFT---------GLAL 81

Query: 396 LRHLDVQSNL-LQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
           L  LD+  N  L+ +    F    R+  L +    L    P     L+ ++YL L +N+L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 452 SGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511
             +      +  +L+ L L  N+      + F   + L  L L+ N +    P +  + G
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 512 DLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
            L  L +  N +     +A     A L  LQ L L  N + 
Sbjct: 202 RLMTLYLFANNLSALPTEAL----APLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 16/199 (8%)

Query: 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP 456
                    LQ +P  + +  + + +  N+++    +S      +  L L +N L+ +  
Sbjct: 14  VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 457 QCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEGKLPP-SLANCGDLE 514
                   L  LDL  N    S+    F     L  L+L+   L+ +L P        L+
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132

Query: 515 VLDVGNNKI----NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI 570
            L + +N +    +D F      L  L  L L  N     I +      R    L  + +
Sbjct: 133 YLYLQDNALQALPDDTF----RDLGNLTHLFLHGN----RISSVPERAFRGLHSLDRLLL 184

Query: 571 SRNGFTGLLPARYFQSLKA 589
            +N     +    F+ L  
Sbjct: 185 HQNRVAH-VHPHAFRDLGR 202

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 44/270 (16%), Positives = 70/270 (25%), Gaps = 77/270 (28%)

Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI 482
               L    P  I   +  + + L  N +S +         +L++L L  N         
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 483 FSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV 541
           F+    L  L+L+DN     + P+     G L  L +    + +                
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE---------------- 119

Query: 542 LRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLD 601
           L    F G               L+ + +  N     LP   F+ L  +           
Sbjct: 120 LGPGLFRG------------LAALQYLYLQDNALQ-ALPDDTFRDLGNL----------- 155

Query: 602 YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNF 661
                                          T + L  NR   +  +    L SL  L  
Sbjct: 156 -------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 662 SHNILRGEIPVE-LTSLTALSVLNLSFNQL 690
             N +   +       L  L  L L  N L
Sbjct: 185 HQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 25/233 (10%)

Query: 357 LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-S 415
           +F      N +++    + +T  + Q D           +  L      +  +  +   +
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQAD--------LDGITTLSAFGTGVTTIEGVQYLN 63

Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
            +  L + DN++T    + + NL+ I  L LS N L  +    +A   S+  LDL   Q 
Sbjct: 64  NLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI 119

Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
               P   +   +L  L L+ N++   + P LA   +L+ L +GN +++D  P   A L 
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPL--ANLS 173

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLK 588
           +L  L    N       +++  +    P L  + +  N  + + P     +L 
Sbjct: 174 KLTTLKADDNKI-----SDISPLAS-LPNLIEVHLKNNQISDVSPLANTSNLF 220

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 46/288 (15%), Positives = 99/288 (34%), Gaps = 35/288 (12%)

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS 279
              +    +  +     T  +L  +  L  +           +  L  L  L L+DNQ +
Sbjct: 21  AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPL 339
              P    NL+K+T + L+         ++   L  +  L+L+  Q +  +   A    L
Sbjct: 77  DLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQ-ITDVTPLAGLSNL 131

Query: 340 SHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVE---- 395
             L L  N +     + +  L+   NL  L + N +++             ++ +     
Sbjct: 132 QVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVSD------------LTPLANLSK 174

Query: 396 LRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454
           L  L    N +  +  + S   +  + + +N+++    S + N S +  + L+N +++  
Sbjct: 175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQ 232

Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGK 502
                 N + +    ++        P   S      + NL  N     
Sbjct: 233 PV--FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 65/271 (23%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           ++   + +T     +  +L  I  L+     ++ +    +   ++L  L+L+ NQ     
Sbjct: 24  IAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
           P        +  L L+ N L+  +   +A    ++ LD+ + +I D  P   A L  LQV
Sbjct: 80  P--LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 540 LVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599
           L L  N        N+  +      L+ + I     + L P      L            
Sbjct: 134 LYLDLNQI-----TNISPLAG-LTNLQYLSIGNAQVSDLTPLANLSKL------------ 175

Query: 600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLL 659
                                            TT+   +N+   + P  +  L +L  +
Sbjct: 176 ---------------------------------TTLKADDNKISDISP--LASLPNLIEV 200

Query: 660 NFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           +  +N +    P  L + + L ++ L+   +
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 63/254 (24%)

Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496
            L+    +    ++++  +    A+ D ++ L         +I  +     +L+ L L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV-QYLNNLIGLELKD 72

Query: 497 NELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP 556
           N++   L P L N   +  L++  N + +      A L  ++ L L S         +V 
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQI-----TDVT 123

Query: 557 SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMIL 616
            +      L+++ +  N  T + P     +L                             
Sbjct: 124 PLAG-LSNLQVLYLDLNQITNISPLAGLTNL----------------------------- 153

Query: 617 TYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTS 676
                             + + N +   + P  +  LS L  L    N +  +I   L S
Sbjct: 154 ----------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLAS 193

Query: 677 LTALSVLNLSFNQL 690
           L  L  ++L  NQ+
Sbjct: 194 LPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 50/276 (18%), Positives = 88/276 (31%), Gaps = 52/276 (18%)

Query: 33  IICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTK 92
           I  D    + I +    S +  T     T   L  +  L+        T I         
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDT----VTQADLDGITTLSAFGTGV--TTIE-GVQYLNN 64

Query: 93  LTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAK-----NLTELR 147
           L  L L  +  + + P  +  L+K+  L+LS             N L        L  ++
Sbjct: 65  LIGLELKDNQITDLAP--LKNLTKITELELS------------GNPLKNVSAIAGLQSIK 110

Query: 148 YLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLL 207
            L L + Q+  V P + L+    +L  L L    +    P+       L+ L++ +  + 
Sbjct: 111 TLDLTSTQITDVTPLAGLS----NLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS 164

Query: 208 T----GNLPTSNWSSPLRILDLS---ITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPA 260
                 NL        L  L      I+  S      + +L +L  + L         P 
Sbjct: 165 DLTPLANLSK------LTTLKADDNKISDISP-----LASLPNLIEVHLKNNQISDVSP- 212

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRIS 296
            L+N   L ++ L +   + +      NL     + 
Sbjct: 213 -LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 32/245 (13%), Positives = 77/245 (31%), Gaps = 63/245 (25%)

Query: 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP 505
               +++ + P       +   +   K+    ++    +    +  L+     +   +  
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL 565
            +    +L  L++ +N+I D  P     L ++  L L  N        NV +I      +
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPL--KNLTKITELELSGNPL-----KNVSAIA-GLQSI 109

Query: 566 RIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEM 625
           + +D++    T + P      L  +                                   
Sbjct: 110 KTLDLTSTQITDVTP---LAGLSNL----------------------------------- 131

Query: 626 ERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL 685
                    + L  N+   + P  +  L++L+ L+  +  +    P  L +L+ L+ L  
Sbjct: 132 -------QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 686 SFNQL 690
             N++
Sbjct: 181 DDNKI 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 312 NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDL 371
              +     L +   V           +  +    + +       +  +    N+ +L L
Sbjct: 22  AFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFL 75

Query: 372 SNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGE 430
           + NKLT  I  L            L  L +  N ++ L  +    +++ LS+  N ++  
Sbjct: 76  NGNKLT-DIKPLANLK-------NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD- 126

Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
             + + +L  +E L L NN ++ +    L+    L  L L  NQ    I    +    L 
Sbjct: 127 -INGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ 181

Query: 491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
            L L+ N +   L   LA   +L+VL++ + +  +      + L     +     S 
Sbjct: 182 NLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 45/247 (18%), Positives = 92/247 (37%), Gaps = 30/247 (12%)

Query: 357 LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-S 415
           +F+       ++ +L    +T      ++          +  +   ++ ++ +  I    
Sbjct: 17  IFSDDAFAETIKDNLKKKSVT-DAVTQNELN-------SIDQIIANNSDIKSVQGIQYLP 68

Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
            +  L ++ NKLT   P  + NL  + +L L  N +  +    L +   L  L L  N  
Sbjct: 69  NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI 124

Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
              I  +      L +L L +N++   +   L+    L+ L + +N+I+D  P   A L 
Sbjct: 125 S-DINGL-VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPL--AGLT 178

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIK--RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHG 593
           +LQ L L          N++  ++       L ++++         P  +  +L      
Sbjct: 179 KLQNLYLS--------KNHISDLRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTV 229

Query: 594 DNDDIDL 600
            N D  L
Sbjct: 230 KNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 46/259 (17%), Positives = 86/259 (33%), Gaps = 63/259 (24%)

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL 492
            S    +     NL   S++  +       +S+  +    +  + S+  I     ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI-QYLPNVTKL 73

Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIY 552
            LN N+L   + P LAN  +L  L +  NK+ D        L +L+ L L  N       
Sbjct: 74  FLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSL--KDLKKLKSLSLEHNGI----- 124

Query: 553 NNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY 612
           +++  +    P+L  + +  N  T +        L                         
Sbjct: 125 SDINGLVH-LPQLESLYLGNNKITDITVLSRLTKLD------------------------ 159

Query: 613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPV 672
                                T+ L +N+   ++P  +  L+ L+ L  S N +  ++  
Sbjct: 160 ---------------------TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR- 194

Query: 673 ELTSLTALSVLNLSFNQLV 691
            L  L  L VL L   + +
Sbjct: 195 ALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 42/268 (15%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
                K NL               +   +  +  + S    +    I  L  +  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN- 76

Query: 125 DIPRTKFEQHTFNNLA-----KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGN 179
                       N L       NL  L +L LD  ++  +  SSL +L    L SLSL +
Sbjct: 77  -----------GNKLTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKK--LKSLSLEH 121

Query: 180 CFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLS---ITKFSGKIPD 236
             +     +   H P L  L L +N +   ++   +  + L  L L    I+        
Sbjct: 122 NGISDINGLV--HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP---- 173

Query: 237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRIS 296
            +  L  L+ L L   +       +L+ LK L VL L   +   +  +   NL     + 
Sbjct: 174 -LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 297 LAHLNFTGQLPLSAFNLTQLSLLELSRN 324
               +      +S  +        +  +
Sbjct: 231 NTDGSLVTPEIIS--DDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 60/312 (19%), Positives = 107/312 (34%), Gaps = 71/312 (22%)

Query: 81  TKIS--SNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNN 138
           T I    +   F +    NL     +  V    + L+ +  +  +             N+
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIAN-------------NS 56

Query: 139 LAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQ 198
             K++  ++YL                     ++  L L    L    P+   +   L  
Sbjct: 57  DIKSVQGIQYL--------------------PNVTKLFLNGNKLTDIKPLA--NLKNLGW 94

Query: 199 LTLSDNGLLT----GNLPTSNWSSPLRILDLS---ITKFSGKIPDTIGNLRDLKFLDLYV 251
           L L +N +       +L        L+ L L    I+  +G     + +L  L+ L L  
Sbjct: 95  LFLDENKVKDLSSLKDLKK------LKSLSLEHNGISDING-----LVHLPQLESLYLGN 143

Query: 252 CYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF 311
                     LS L +L  L+LEDNQ S   P     L+KL  + L+  + +    L+  
Sbjct: 144 NKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALA-- 197

Query: 312 NLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRI--PSWLFNLSTSENLVE 368
            L  L +LEL   + + +   H S L   + +K      DG +  P  + +    E    
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN----TDGSLVTPEIISDDGDYEKP-N 252

Query: 369 LDLSNNKLTGQI 380
           +     + T ++
Sbjct: 253 VKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 37/247 (14%), Positives = 78/247 (31%), Gaps = 67/247 (27%)

Query: 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP 505
                +  +       F      +L+K     ++ Q  ++   +  +  N+++++  +  
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG 63

Query: 506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIK--RPFP 563
            +    ++  L +  NK+ D  P   A L  L  L L          N V  +   +   
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFL--------DENKVKDLSSLKDLK 112

Query: 564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL 623
           +L+ + +  NG + +    +   L                                    
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQL------------------------------------ 136

Query: 624 EMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVL 683
                     ++ L NN+   +    + +L+ L  L+   N +  +I   L  LT L  L
Sbjct: 137 ---------ESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 684 NLSFNQL 690
            LS N +
Sbjct: 184 YLSKNHI 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 53/293 (18%), Positives = 96/293 (32%), Gaps = 49/293 (16%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315
           ++P+ L   +    L     +        F     L +I ++  +    +    F NL +
Sbjct: 23  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSNN 374
           L  + + +                ++L          I    F NL    NL  L +SN 
Sbjct: 81  LHEIRIEKA---------------NNLL--------YINPEAFQNLP---NLQYLLISNT 114

Query: 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNL-LQRLP---FI-LSSRIRFLSVSDNKLTG 429
            +           V +I S++   LD+Q N+ +  +    F+ LS     L ++ N +  
Sbjct: 115 GIK--HLP----DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 430 EFPSSICN-LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCY 487
           E  +S  N     E     NN+L  +            +LD+ + +   S+P        
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLK 226

Query: 488 DLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVL 540
            L A +  +     K  P+L     L    +       AF  W   +  L  +
Sbjct: 227 KLRARSTYNL----KKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 17/254 (6%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
           C +   T+I S+         L    +    I     S    L  +++S +      E  
Sbjct: 16  CQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 135 TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HF 193
            F+NL   L E+R  +     +  + P +  NL   +L  L + N  ++   P     H 
Sbjct: 74  VFSNL-PKLHEIR--IEKANNLLYINPEAFQNLP--NLQYLLISNTGIK-HLPDVHKIHS 127

Query: 194 PFLRQLTLSDNGLLTGNLPT---SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLY 250
                L + DN  +   +        S    IL L+               +  +     
Sbjct: 128 LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 251 VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSA 310
               +              +L++   +          NL KL   S  +L    +LP + 
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TL 242

Query: 311 FNLTQLSLLELSRN 324
             L  L    L+  
Sbjct: 243 EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 44/278 (15%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
               ++K+T E PS +        L      L  +     + F  L  +++ +N     I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 480 P-QIFSKCYDLVALNL-NDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTATLPR 536
              +FS    L  + +   N L   + P    N  +L+ L + N  I            +
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 537 LQVLVLRSNSFHGPIYNNVPSI-KRPF----PELRIIDISRNGFTGLLPARYFQSLKAMM 591
             +L ++ N        N+ +I +  F     E  I+ +++NG   +     F   +   
Sbjct: 130 KVLLDIQDN-------INIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQ--- 178

Query: 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV- 650
               D+++L   N+          L    +  ++    +    +D+S  R    +P    
Sbjct: 179 ---LDELNLSDNNN----------LEE--LPNDVFHGASGPVILDISRTRIH-SLPSYGL 222

Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
             L  L+  +  +     ++P  L  L AL   +L++ 
Sbjct: 223 ENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 65/268 (24%)

Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
              IC+ S         + ++  IP  L    +   L     + R      FS   DL  
Sbjct: 3   HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 58

Query: 492 LNLNDNELEGKLPPS-LANCGDLEVLDVGN-NKI----NDAFPYWTATLPRLQVLVLRSN 545
           + ++ N++   +     +N   L  + +   N +     +AF      LP LQ L++ + 
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF----QNLPNLQYLLISNT 114

Query: 546 SFHGPIYNNVPS-IKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN 604
                   ++P   K    +  ++DI  N     +    F  L                 
Sbjct: 115 GIK-----HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV------------ 157

Query: 605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-GKLSSLKLLNFSH 663
                                         + L+ N  +  I           +L    +
Sbjct: 158 -----------------------------ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 664 NILRGEIPVE-LTSLTALSVLNLSFNQL 690
           N L  E+P +     +   +L++S  ++
Sbjct: 188 NNLE-ELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 43/257 (16%), Positives = 76/257 (29%), Gaps = 62/257 (24%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNG-TKISSN-FGQFTKLTHLNLSFSY 102
           +++S + +L  +  +     L  L ++ +     N    I+   F     L +L +S + 
Sbjct: 59  IEISQNDVLEVIEAD-VFSNLPKLHEIRI--EKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 103 FSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPS 162
              +         + V LD+  +I     E+++F  L+     L                
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW--------------- 160

Query: 163 SLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI 222
                         L    ++ E     F+   L +L LSDN  L   LP          
Sbjct: 161 --------------LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELP---------- 194

Query: 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF 282
                        D          LD+            L NLK+L   +  + +   + 
Sbjct: 195 ------------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KL 239

Query: 283 PDVFGNLSKLTRISLAH 299
           P     L  L   SL +
Sbjct: 240 P-TLEKLVALMEASLTY 255

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 31/230 (13%)

Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQL 316
           +P +L        L+L  N         F +  +L  + L+       +   A+ +L+ L
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 317 SLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
           S L L+ N  +  L   A S L  L  L      L   + ++         L EL++++N
Sbjct: 79  STLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK--TLKELNVAHN 134

Query: 375 KLT----GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-------ILSSRIRFLSVS 423
            +      + F          +   L HLD+ SN +Q +          +      L +S
Sbjct: 135 LIQSFKLPEYFS---------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 424 DNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
            N +             ++ L L  N L  +         SL  + L  N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 20/197 (10%)

Query: 402 QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLAN 461
                 ++P  L    + L +S N L      S  +   ++ L+LS   +  +      +
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 462 FDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLA-NCGDLEVLDVG 519
              LS L L  N  + S+    FS    L  L   +  L   L      +   L+ L+V 
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132

Query: 520 NNKI-----NDAFPYWTATLPRLQVLVLRSN---SFHGPIYNNVPSIKRPFPELRIIDIS 571
           +N I      + F    + L  L+ L L SN   S +      +  +      L   D+S
Sbjct: 133 HNLIQSFKLPEYF----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL---DLS 185

Query: 572 RNGFTGLLPARYFQSLK 588
            N     +    F+ ++
Sbjct: 186 LNPMNF-IQPGAFKEIR 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 90  FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTE 145
                +L+LSF+    +         +L  LDLS      I    ++         +L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---------SLSH 77

Query: 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF-LRQLTLSDN 204
           L  L+L    + S+   +   LS  SL  L      L              L++L ++ N
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLS--SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

Query: 205 GLLTGNLPTS-NWSSPLRILDLS---ITKFSGKIPDTIGNLRDLKF-LDLYVCYFDGQVP 259
            + +  LP   +  + L  LDLS   I          +  +  L   LDL +   +   P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 260 ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299
            +   + +L  L L+ NQ       +F  L+ L +I L  
Sbjct: 195 GAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 43/275 (15%), Positives = 79/275 (28%), Gaps = 84/275 (30%)

Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-Q 481
            +     + P ++    + + L+LS N L  +      +F  L +LDL + + + +I   
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG 70

Query: 482 IFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNNKINDAFPYWTATLPRLQVL 540
            +     L  L L  N ++  L     +    L+ L      +        A+L      
Sbjct: 71  AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL--------ASLE----- 116

Query: 541 VLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDL 600
              +                    L+ ++++ N         YF +L  +          
Sbjct: 117 ---NFPIGHL------------KTLKELNVAHNLIQSFKLPEYFSNLTNL---------- 151

Query: 601 DYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV-GKLSSLKL- 658
                                             +DLS+N+ +  I       L  + L 
Sbjct: 152 --------------------------------EHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178

Query: 659 ---LNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
              L+ S N +   I         L  L L  NQL
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 65  LHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
           L HL  L L  N      ++   F   + L  L    +  + +    I  L  L  L+++
Sbjct: 75  LSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 124 S-DIPRTKFEQH-TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS--ASLISLSLGN 179
              I    F+    F+    NLT L +L L + ++ S+  + L  L       +SL L  
Sbjct: 133 HNLI--QSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 180 CFLRGEFPIDIFHFPFLRQLTLSDNGL 206
             +        F    L++L L  N L
Sbjct: 187 NPMN-FIQPGAFKEIRLKELALDTNQL 212

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 9/168 (5%)

Query: 382 QLDQWPVERISSVE---LRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICN 437
            L Q     I+  +   L ++ + +  +  L  I     I+ L++++   T    + I  
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YNPISG 86

Query: 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497
           LS +E L +    ++      L+   SL+LLD+  +    SI    +    + +++L+ N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 498 ELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
                + P L    +L+ L++  + ++D         P+L  L   S 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 14/164 (8%)

Query: 364 ENLVELDLSNNKLTGQIFQLDQWPVERISS-VELRHLDVQSNLLQRLPFILS-SRIRFLS 421
            +L  + L+N  +T          +  I     ++ L + +        I   S +  L 
Sbjct: 44  NSLTYITLANINVTD---------LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLR 94

Query: 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
           +    +T +   ++  L+++  L++S+++    I   +     ++ +DL  N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525
           +     +L +LN+  + +       + +   L  L   +  I  
Sbjct: 155 L-KTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 43/188 (22%)

Query: 196 LRQLTLSDNGL--LTG--NLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYV 251
           L  +TL++  +  LTG            ++ L ++    +   P  I  L +L+ L +  
Sbjct: 46  LTYITLANINVTDLTGIEYAHN------IKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 252 CYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQL-PLSA 310
                    +LS L  LT+L++  +            L K+  I L++      + PL  
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK- 156

Query: 311 FNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELD 370
             L +L  L +  +              +                          L +L 
Sbjct: 157 -TLPELKSLNIQFDGV-------HDYRGIEDFP---------------------KLNQLY 187

Query: 371 LSNNKLTG 378
             +  + G
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 48/215 (22%)

Query: 71  LNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----SDI 126
           LN      +   I+    Q   LT++ L+    + +    I     +  L ++    ++ 
Sbjct: 26  LNGLLGQSSTANIT--EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY 81

Query: 127 PRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEF 186
                     N +   L+ L  L +    + S    +L  L+S  L  L + +       
Sbjct: 82  ----------NPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTS--LTLLDISHSAHDDSI 128

Query: 187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKF 246
              I   P +  + LS NG +T               D+            +  L +LK 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAIT---------------DIM----------PLKTLPELKS 163

Query: 247 LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE 281
           L++            + +  +L  L        G+
Sbjct: 164 LNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 41/213 (19%)

Query: 263 SNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELS 322
           S  K      L  +  +         ++ LT I+LA++N T    +       +  L ++
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTIN 74

Query: 323 RNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ 382
                      +    L  L++ G  +       L  L+   +L  LD+S++     I  
Sbjct: 75  NIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---SLTLLDISHSAHDDSIL- 129

Query: 383 LDQWPVERISS-VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441
                  +I++  ++  +D+  N                      +T      +  L  +
Sbjct: 130 ------TKINTLPKVNSIDLSYN--------------------GAITD--IMPLKTLPEL 161

Query: 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
           + LN+  + +       + +F  L+ L      
Sbjct: 162 KSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 60  STLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVA 119
           + +  L +L++L +   D    KI  N    T LT L++S S     + ++I+ L K+ +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 120 LDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGN 179
           +DLS +   T         L   L EL+ L +    +       + +     L  L   +
Sbjct: 141 IDLSYNGAITDIM-----PLK-TLPELKSLNIQFDGVHDY--RGIEDFP--KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV 691
             + +            +  L+SL LL+ SH+     I  ++ +L  ++ ++LS+N  +
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
           T +D+S++  +  I  ++  L  +  ++ S+N    +I   L +L  L  LN+ F+ +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
             + ++N       P  +  LS+L+ L      +  +    L+ LT+L++L++S +  
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 1e-14
 Identities = 45/241 (18%), Positives = 79/241 (32%), Gaps = 18/241 (7%)

Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
                +    QL   ELS  +         SC  L  L+    +    I   +  L    
Sbjct: 340 CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD 424
              E     + L      +D      +  +  + L   S L           +R L ++ 
Sbjct: 400 YEKETLQYFSTLK----AVDPMRAAYLDDLRSKFLLENSVLKMEYA-----DVRVLHLAH 450

Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS 484
             LT      +  L  + +L+LS+N L   +P  LA    L +L    N    ++  + +
Sbjct: 451 KDLTV--LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDGV-A 505

Query: 485 KCYDLVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKINDAFPYWT---ATLPRLQVL 540
               L  L L +N L+       L +C  L +L++  N +             LP +  +
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

Query: 541 V 541
           +
Sbjct: 566 L 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 5e-12
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 29/234 (12%)

Query: 347 NFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLL 406
             L  R   W  + +T E L   +LS         +      E  S  EL+ L+ ++   
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVE-------KSTVLQSELESCKELQELEPENKWC 384

Query: 407 QRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI-----PQCLAN 461
                +L   +  L      L          L  ++ +  +                   
Sbjct: 385 LLTIILLMRALDPLLYEKETLQ-----YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 462 FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521
           +  + +L L        +  +  +   +  L+L+ N L   LPP+LA    LEVL   +N
Sbjct: 440 YADVRVLHLAHKDLT-VLCHL-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

Query: 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIK--RPFPELRIIDISRN 573
            + +      A LPRLQ L+L +N           +I+     P L ++++  N
Sbjct: 497 ALENVDG--VANLPRLQELLLCNNRL-----QQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 51/320 (15%), Positives = 86/320 (26%), Gaps = 50/320 (15%)

Query: 14  TYPKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWL---LGTLHPNSTLFLLHHLQK 70
                   ++      W          HV   DL ++ L   L               ++
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 71  LNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTK 130
             L  +         +     +L    LS    S ++ S++    +L  L+  +      
Sbjct: 331 CVLLKDRPE--CWCRDSATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLL- 386

Query: 131 FEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDI 190
               T   L + L  L Y             S+L  +       L         E  +  
Sbjct: 387 ----TIILLMRALDPLLYEKETLQYF-----STLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 191 FHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLY 250
             +  +R L L+                        +T         +  L  +  LDL 
Sbjct: 438 MEYADVRVLHLAHK---------------------DLTVLCH-----LEQLLLVTHLDLS 471

Query: 251 VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH---LNFTGQLP 307
                  +P +L+ L+ L VL   DN           NL +L  + L +          P
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQP 528

Query: 308 LSAFNLTQLSLLELSRNQFV 327
           L   +  +L LL L  N   
Sbjct: 529 LV--SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 5e-07
 Identities = 65/372 (17%), Positives = 117/372 (31%), Gaps = 48/372 (12%)

Query: 51  WLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQ 110
           WLLG   P+  L  +H + +     +      ++      T L  ++ +        P  
Sbjct: 234 WLLGRAEPHDVLCCVH-VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDG 292

Query: 111 ISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSA 170
            +R S +   DL +     +  QHTF  +       +  +L   +       S  +    
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ-- 350

Query: 171 SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKF 230
            L    L +         ++     L++L   +   L   +       PL     ++  F
Sbjct: 351 -LFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 231 SGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS 290
           S      +  +R     DL   +   +          + VL+L     +           
Sbjct: 409 STL--KAVDPMRAAYLDDLRSKFLL-ENSVLKMEYADVRVLHLAHKDLT----------- 454

Query: 291 KLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350
                 L HL            L  ++ L+LS N+     P  A+   L  L+   N L+
Sbjct: 455 -----VLCHLE----------QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499

Query: 351 GRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWP-VERISSVE-LRHLDVQSNLLQR 408
             +      ++    L EL L NN+L        Q   ++ + S   L  L++Q N L +
Sbjct: 500 -NVD----GVANLPRLQELLLCNNRLQ-------QSAAIQPLVSCPRLVLLNLQGNSLCQ 547

Query: 409 LPFILSSRIRFL 420
              I       L
Sbjct: 548 EEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 51/303 (16%), Positives = 94/303 (31%), Gaps = 34/303 (11%)

Query: 405 LLQRLPFILSSRIRFLSVSDNKLTGEFPSSI----CNLSTIEYLNLSNNSLSGMIPQCLA 460
           LL R           +S  +  L+  F   +       + +  ++ +  S+    P    
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 461 NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGK----LPPSLANCGDLEVL 516
               + L DL        +PQ   +     + +  +  L            A    L   
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 517 DVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIK---------RPFPELRI 567
           ++   K          +   LQ L   +      I   + ++          + F  L+ 
Sbjct: 355 ELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 568 IDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMER 627
           +D  R  +   L +++      +     D   L   +           LT     L    
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD---------LT----VLCHLE 460

Query: 628 VLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSF 687
            L + T +DLS+NR    +P  +  L  L++L  S N L   +   + +L  L  L L  
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517

Query: 688 NQL 690
           N+L
Sbjct: 518 NRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 39/279 (13%), Positives = 75/279 (26%), Gaps = 36/279 (12%)

Query: 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
             +   S++D      F        + +   L  +          A  + L   +L   +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK 360

Query: 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534
               +      C +L  L   +      +   +     L          +         L
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST--------L 411

Query: 535 PRLQVL-VLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHG 593
             +  +     +            +K  + ++R++ ++    T L        +      
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT----- 466

Query: 594 DNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL 653
               +DL + N           L      L     L     +  S+N  E +    V  L
Sbjct: 467 ---HLDLSH-NR----------LRALPPALAA---LRCLEVLQASDNALENV--DGVANL 507

Query: 654 SSLKLLNFSHNILRG-EIPVELTSLTALSVLNLSFNQLV 691
             L+ L   +N L+       L S   L +LNL  N L 
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 65/357 (18%), Positives = 118/357 (33%), Gaps = 49/357 (13%)

Query: 217 SSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQ----VPASLSNLKQLTVL 271
           S  ++ LD+   + S     + +  L+  + + L  C         + ++L     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 272 NLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG---------QLPLSAFNLTQLSLLELS 322
           NL  N+             +     +  L+             L  +   L  L  L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 323 RNQF-------VGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN-LSTSENLVELDLSNN 374
            N         + +      C  L  L+L    L       L + L    +  EL +SNN
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLL-----QRLPFILSS--RIRFLSVSDNKL 427
            +     ++      + S  +L  L ++S  +     + L  I++S   +R L++  NKL
Sbjct: 181 DINEAGVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 428 TGEFPSSICN-----LSTIEYLNLSNNSLS----GMIPQCLANFDSLSLLDLRKNQFRGS 478
                + +C       S +  L +    ++    G + + L   +SL  L L  N+    
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 479 -----IPQIFSKCYDLVALNLNDNELEGK----LPPSLANCGDLEVLDVGNNKINDA 526
                   +      L +L +                LA    L  L + NN++ DA
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 81/442 (18%), Positives = 136/442 (30%), Gaps = 87/442 (19%)

Query: 141 KNLTELRYLLLDNVQMFSVVPSSLLNLSSA--SLISLSLGNCFLRGEFPIDIF----HFP 194
            ++  L      ++Q   +  +    L         + L +C L      DI       P
Sbjct: 3   LDIQSL------DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 56

Query: 195 FLRQLTLSDNGL-------LTGNLPTSNWSSPLRILDLSITKFSGK----IPDTIGNLRD 243
            L +L L  N L       +   L T +    ++ L L     +G     +  T+  L  
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCK--IQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 244 LKFLDLYVCYFDGQVPASLSNLKQ-----LTVLNLEDNQFSGE----FPDVFGNLSKLTR 294
           L+ L L            L          L  L LE    S         V         
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 295 ISLAH--LNFTGQLPLSA---FNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFL 349
           +++++  +N  G   L      +  QL  L+L             +C  L  +       
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-----TSDNCRDLCGI------- 222

Query: 350 DGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLL--- 406
                     +++  +L EL L +NKL          P     S  LR L +    +   
Sbjct: 223 ----------VASKASLRELALGSNKLGDVGMAELC-PGLLHPSSRLRTLWIWECGITAK 271

Query: 407 --QRLPFIL--SSRIRFLSVSDNKLTGEFPSSICNL-----STIEYLNLSNNSLSG---- 453
               L  +L     ++ LS++ N+L  E    +C         +E L + + S +     
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 454 MIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK-----CYDLVALNLNDNELEGK----LP 504
                LA    L  L +  N+   +  +   +        L  L L D ++       L 
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 505 PSLANCGDLEVLDVGNNKINDA 526
            +L     L  LD+ NN + DA
Sbjct: 392 ATLLANHSLRELDLSNNCLGDA 413

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 77/465 (16%), Positives = 130/465 (27%), Gaps = 100/465 (21%)

Query: 62  LFLLHHLQKLNLACNDFNGT---KISSNFGQFTKLTHLNLSFSYFSGIVPSQISRL---- 114
           L LL   Q + L            ISS       L  LNL  +    +    + +     
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 115 -SKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSA--- 170
             K+  L L +            + L      L+ L L +  +     + L  L      
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLL---GDAGLQLLCEGLLD 139

Query: 171 ---SLISLSLGNCFLRGEFPIDIF----HFPFLRQLTLSDNGL-------LTGNLPTSNW 216
               L  L L  C L       +       P  ++LT+S+N +       L   L  S  
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 217 SSPLRILDLSITKFSGK----IPDTIGNLRDLKFLDLYVCYFDGQ-----VPASLSNLKQ 267
              L  L L     +      +   + +   L+ L L              P  L    +
Sbjct: 200 Q--LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQF- 326
           L  L + +   + +             +            L       L  L L+ N+  
Sbjct: 258 LRTLWIWECGITAKG---------CGDLCRV---------LR--AKESLKELSLAGNELG 297

Query: 327 ------VGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN-LSTSENLVELDLSNNKLTGQ 379
                 + +      C  L  L +          S   + L+ +  L+EL +SNN+L   
Sbjct: 298 DEGARLLCETLLEPGC-QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-- 354

Query: 380 IFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE----FPSSI 435
                               D     L +      S +R L ++D  ++        +++
Sbjct: 355 --------------------DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394

Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLA-----NFDSLSLLDLRKNQF 475
               ++  L+LSNN L       L          L  L L    +
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.0 bits (141), Expect = 6e-09
 Identities = 54/312 (17%), Positives = 92/312 (29%), Gaps = 76/312 (24%)

Query: 266 KQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQ 325
             +  L+++  + S                  A L            L Q  ++ L    
Sbjct: 3   LDIQSLDIQCEELSDA--------------RWAEL---------LPLLQQCQVVRLDDCG 39

Query: 326 FVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQ 385
                   A C  +S                   L  +  L EL+L +N+L         
Sbjct: 40  L-----TEARCKDISSA-----------------LRVNPALAELNLRSNELGDVGVHCVL 77

Query: 386 WPVERISSVELRHLDVQSNLL-----QRLPFILSS--RIRFLSVSDNKLTGEFPSSIC-- 436
               +  S +++ L +Q+  L       L   L +   ++ L +SDN L       +C  
Sbjct: 78  -QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136

Query: 437 ---NLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKC--- 486
                  +E L L   SLS      +   L        L +  N    +  ++  +    
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 487 --YDLVALNLNDNELEGK----LPPSLANCGDLEVLDVGNNKINDA-----FPYWTATLP 535
               L AL L    +       L   +A+   L  L +G+NK+ D       P       
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 536 RLQVLVLRSNSF 547
           RL+ L +     
Sbjct: 257 RLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 62/375 (16%), Positives = 108/375 (28%), Gaps = 70/375 (18%)

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSV--ELRHLDVQSNLL-----QRLPFILSS 415
           S ++  LD+   +L+             +  +  + + + +    L     + +   L  
Sbjct: 2   SLDIQSLDIQCEELSDA-------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 54

Query: 416 --RIRFLSVSDNKLTGEFPSSICNL-----STIEYLNLSNNSLSGM----IPQCLANFDS 464
              +  L++  N+L       +          I+ L+L N  L+G     +   L    +
Sbjct: 55  NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 465 LSLLDLRKNQFRGSIPQIFSK-----CYDLVALNLNDNELEGK----LPPSLANCGDLEV 515
           L  L L  N    +  Q+  +        L  L L    L       L   L    D + 
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 516 LDVGNNKINDA-FPYWTATLP----RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI 570
           L V NN IN+A        L     +L+ L L S         ++  I      LR + +
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 571 SRN--GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL--EME 626
             N  G  G                    + +               +T KG      + 
Sbjct: 235 GSNKLGDVG---MAELCPGLLHPSSRLRTLWIWECG-----------ITAKGCGDLCRVL 280

Query: 627 RVLNIFTTIDLSNNRF--EGMIPKEVGKL-----SSLKLLNFSHNILRGE----IPVELT 675
           R       + L+ N    EG   + + +        L+ L                  L 
Sbjct: 281 RAKESLKELSLAGNELGDEGA--RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338

Query: 676 SLTALSVLNLSFNQL 690
               L  L +S N+L
Sbjct: 339 QNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 54/308 (17%), Positives = 102/308 (33%), Gaps = 42/308 (13%)

Query: 413 LSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGM----IPQCLANFDSLSL 467
           +S  I+ L +   +L+    + +   L   + + L +  L+      I   L    +L+ 
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 468 LDLRKNQFRGSIPQIFSKC-----YDLVALNLNDNELEGK----LPPSLANCGDLEVLDV 518
           L+LR N+          +        +  L+L +  L G     L  +L     L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 519 GNNKINDA-FPYWTATL----PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573
            +N + DA        L     RL+ L L   S        + S+ R  P+ + + +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL--EMERVLNI 631
                   R             + + L+              +T         +      
Sbjct: 181 DI-NEAGVRVLCQGLKDSPCQLEALKLESCG-----------VTSDNCRDLCGIVASKAS 228

Query: 632 FTTIDLSNNRF--EGMIPKEVGKL---SSLKLLNFSHNILRGE----IPVELTSLTALSV 682
              + L +N+    GM     G L   S L+ L      +  +    +   L +  +L  
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 683 LNLSFNQL 690
           L+L+ N+L
Sbjct: 289 LSLAGNEL 296

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 47/265 (17%), Positives = 79/265 (29%), Gaps = 48/265 (18%)

Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL 321
              L      NL     +         LS +   +  + N      +     T L  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHL 70

Query: 322 SRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIF 381
           S NQ             +S L                 L     L EL ++ N+L     
Sbjct: 71  SHNQ-------------ISDLS---------------PLKDLTKLEELSVNRNRLKN--- 99

Query: 382 QLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLST 440
                 +  I S  L  L + +N L+    ++    +  LS+ +NKL       +  LS 
Sbjct: 100 ------LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSK 151

Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
           +E L+L  N ++      L     ++ +DL   +      +   + Y    +   D    
Sbjct: 152 LEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

Query: 501 GKLPPSLANCGDLEVLDVGNNKIND 525
              P  ++N G      V       
Sbjct: 210 S--PYYISNGGSYVDGCVLWELPVY 232

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 28/194 (14%)

Query: 357 LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-S 415
           +F      N V+ +L    +T  +    +          +++ +  ++ +Q L  +   +
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT-DLVSQKELS-------GVQNFNGDNSNIQSLAGMQFFT 63

Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSL--LDLRKN 473
            ++ L +S N+++    S + +L+ +E L+++ N L       L    S  L  L L  N
Sbjct: 64  NLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNN 116

Query: 474 QFRGSIPQI--FSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT 531
           +    +          +L  L++ +N+L+  +   L     LEVLD+  N+I +      
Sbjct: 117 E----LRDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--L 168

Query: 532 ATLPRLQVLVLRSN 545
             L ++  + L   
Sbjct: 169 TRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 46/230 (20%)

Query: 79  NGTKIS--SNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF 136
             T I+              NL     + +V      LS +   +               
Sbjct: 5   RPTPINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGD------------N 50

Query: 137 NNLAK-----NLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF 191
           +N+         T L+ L L + Q+  +  S L +L+   L  LS+    L+    ++  
Sbjct: 51  SNIQSLAGMQFFTNLKELHLSHNQISDL--SPLKDLT--KLEELSVNRNRLKN---LNGI 103

Query: 192 HFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLS---ITKFSGKIPDTIGNLRDLKFLD 248
               L +L L +N  L       +  + L IL +    +          +G L  L+ LD
Sbjct: 104 PSACLSRLFLDNNE-LRDTDSLIHLKN-LEILSIRNNKLKSIVM-----LGFLSKLEVLD 156

Query: 249 L---YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295
           L    +    G     L+ LK++  ++L   +   E       L     +
Sbjct: 157 LHGNEITNTGG-----LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 29/241 (12%)

Query: 141 KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLT 200
             L       L    +  +V    L+     + + +  N  ++    +    F  L++L 
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELS----GVQNFNGDNSNIQSLAGMQ--FFTNLKELH 69

Query: 201 LSDNGLLT----GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG 256
           LS N +       +L        L  L ++  +        +  +       L++   + 
Sbjct: 70  LSHNQISDLSPLKDLTK------LEELSVNRNRLK-----NLNGIPSACLSRLFLDNNEL 118

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
           +   SL +LK L +L++ +N+       + G LSKL  + L     T    L+   L ++
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGGLT--RLKKV 174

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
           + ++L+  + V +   +   L +++        DGR  S  + +S   + V+  +     
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTV---KDPDGRWIS-PYYISNGGSYVDGCVLWELP 230

Query: 377 T 377
            
Sbjct: 231 V 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 34/246 (13%), Positives = 80/246 (32%), Gaps = 64/246 (26%)

Query: 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP 505
                ++ + P       +    +L K      + Q   +   +   N +++ ++  L  
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-SLAG 58

Query: 506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL 565
            +    +L+ L + +N+I+D  P     L +L+ L +  N        N+  I      L
Sbjct: 59  -MQFFTNLKELHLSHNQISDLSPL--KDLTKLEELSVNRNRL-----KNLNGIP--SACL 108

Query: 566 RIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEM 625
             + +  N         + ++L                                      
Sbjct: 109 SRLFLDNNELRDTDSLIHLKNL-------------------------------------- 130

Query: 626 ERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL 685
                    + + NN+ + ++   +G LS L++L+   N +       LT L  ++ ++L
Sbjct: 131 -------EILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDL 179

Query: 686 SFNQLV 691
           +  + V
Sbjct: 180 TGQKCV 185

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 15/217 (6%)

Query: 91  TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLL 150
                L L  ++   I     S L  +  + +S D+   + E H+F NL   +T +   +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIE--I 87

Query: 151 LDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF--HFPFLRQLTLSDNGLLT 208
            +   +  + P +L  L    L  L + N  L+  FP             L ++DN  +T
Sbjct: 88  RNTRNLTYIDPDALKELP--LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 209 GNLPT---SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPA-SLSN 264
            ++P        +    L L    F+  +     N   L  + L    +   +   +   
Sbjct: 145 -SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 265 LKQ-LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHL 300
           +    ++L++     +        +L +L   +   L
Sbjct: 203 VYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 34/211 (16%), Positives = 80/211 (37%), Gaps = 15/211 (7%)

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQF 326
              L L +          F NL  ++RI ++      QL   +F NL++++ +E+   + 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 327 VGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
           +  +   A   LP L  L +    L    P     + +++    L++++N     +  + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTK-VYSTDIFFILEITDNP---YMTSIP 147

Query: 385 QWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICN--LS 439
               + + + E   L + +N    +    F  + ++  + ++ NK              S
Sbjct: 148 VNAFQGLCN-ETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDL 470
               L++S  S++ +  + L +   L   + 
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 169 SASLISLSLGNCFLRGEFPIDIFH-FPFLRQLTLSDNGLLTG-------NLPTSNWSSPL 220
             S  +L L    LR   P   F   P + ++ +S +  L         NL        +
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK------V 82

Query: 221 RILDLSITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQVPA--SLSNLKQLTVLNLEDNQ 277
             +++  T+    I  D +  L  LKFL ++        P    + +     +L + DN 
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNP 141

Query: 278 FSGEFP-DVFGNLSKLTR-ISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA- 334
           +    P + F  L   T  + L +  FT  +   AFN T+L  + L++N+++  +   A 
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 335 SCLP--LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
             +    S L +    +   +PS        E+L EL   N 
Sbjct: 201 GGVYSGPSLLDVSQTSVT-ALPSKGL-----EHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 14/192 (7%)

Query: 65  LHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFS-YFSGIVPSQISRLSKLVALDL 122
           L ++ ++ ++ +     ++ S+ F   +K+TH+ +  +   + I P  +  L  L  L +
Sbjct: 54  LPNISRIYVSIDVTL-QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 123 SS-DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCF 181
            +  +    F   T          L   + DN  M S+  ++   L +   ++L L N  
Sbjct: 113 FNTGL--KMFPDLTKVYSTDIFFIL--EITDNPYMTSIPVNAFQGLCN-ETLTLKLYNNG 167

Query: 182 LRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPT---SNWSSPLRILDLSITKFSGKIPDTI 238
                    F+   L  + L+ N  LT  +         S   +LD+S T  +      +
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 239 GNLRDLKFLDLY 250
            +L++L   + +
Sbjct: 226 EHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 42/273 (15%), Positives = 81/273 (29%), Gaps = 59/273 (21%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
             V+   +    PS   +    + L L    L  +     +N  ++S + +  +     +
Sbjct: 16  FRVTCKDIQ-RIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 480 P-QIFSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTA--TLP 535
               F     +  + + +      + P  L     L+ L + N  +   FP  T   +  
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTD 130

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDN 595
              +L +  N +   I  N  + +    E   + +  NGFT  +    F   K       
Sbjct: 131 IFFILEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGFTS-VQGYAFNGTK------- 180

Query: 596 DDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV--GKL 653
                                                  + L+ N++  +I K+   G  
Sbjct: 181 ------------------------------------LDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 654 SSLKLLNFSHNILRGEIPVE-LTSLTALSVLNL 685
           S   LL+ S   +   +P + L  L  L   N 
Sbjct: 205 SGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 67/270 (24%)

Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLV 490
            S  C     E   ++   +   IP    +      L L +   R +IP   FS   ++ 
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQR-IPSLPPS---TQTLKLIETHLR-TIPSHAFSNLPNIS 58

Query: 491 ALNLNDNELEGKLPP-SLANCGDLEVLDVGNNKI-----NDAFPYWTATLPRLQVLVLRS 544
            + ++ +    +L   S  N   +  +++ N +       DA       LP L+ L + +
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL----KELPLLKFLGIFN 114

Query: 545 NSFHGPIYNNVPSIK--RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602
                      P +          I++I+ N +   +P   FQ L               
Sbjct: 115 TGL-----KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL---------- 159

Query: 603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFS 662
                                          T+ L NN F   +       + L  +  +
Sbjct: 160 -------------------------------TLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 663 HNILRGEIPVELTS--LTALSVLNLSFNQL 690
            N     I  +      +  S+L++S   +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 64/390 (16%), Positives = 120/390 (30%), Gaps = 80/390 (20%)

Query: 242 RDLKFLDLYVCYFDGQ----VPASLSNLKQLTVLNLEDNQFSGE----FPDVFGNLSKLT 293
             ++   L +     +    V A L     +  + L  N    E      +   +   L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 294 RISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRI 353
               +   FTG++        +L L  L +               L  ++L  N      
Sbjct: 64  IAEFSD-IFTGRVKDEIPEALRLLLQALLKCPK------------LHTVRLSDNAFGPTA 110

Query: 354 PSWLFN-LSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFI 412
              L + LS    L  L L NN L  Q          +I+   L+ L V           
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQ-------AGAKIARA-LQELAVNKKAKN----- 157

Query: 413 LSSRIRFLSVSDNKLTGEFPSSIC----NLSTIEYLNLSNNSL-----SGMIPQCLANFD 463
            +  +R +    N+L             +   +  + +  N +       ++ + LA   
Sbjct: 158 -APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 464 SLSLLDLRKNQF--RG--SIPQIFSKCYDLVALNLNDNELEGK----LPPSLANCG--DL 513
            L +LDL+ N F   G  ++        +L  L LND  L  +    +  + +      L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 514 EVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573
           + L +  N+I               V  L++             I    P+L  ++++ N
Sbjct: 277 QTLRLQYNEIELD-----------AVRTLKT------------VIDEKMPDLLFLELNGN 313

Query: 574 GFT--GLLPARYFQSLKAMMHGDNDDIDLD 601
            F+    +     +       G+ D++D  
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 58/299 (19%), Positives = 106/299 (35%), Gaps = 51/299 (17%)

Query: 240 NLRDLKFLDLYVCYFDGQVPA-------SLSNLKQLTVLNLEDNQFSGEFPDVFGN-LSK 291
           +L   +F D++      ++P        +L    +L  + L DN F     +   + LSK
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 292 LTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFL-D 350
            T +   +L+  G  P +   + + +L EL+ N+     P       L  +  G N L +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIAR-ALQELAVNKKAKNAPP------LRSIICGRNRLEN 173

Query: 351 GRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV-----ELRHLDVQSNL 405
           G +  W     +   L  + +  N +        +     +        EL+ LD+Q N 
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIR------PEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 406 L-----QRLPFILSS--RIRFLSVSDNKLTGEFPSSICNL------STIEYLNLSNNSLS 452
                   L   L S   +R L ++D  L+    +++ +         ++ L L  N + 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 453 GMIPQCLA-----NFDSLSLLDLRKNQFR------GSIPQIFSKCYDLVALNLNDNELE 500
               + L          L  L+L  N+F         I ++FS         L+D E  
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 51/312 (16%), Positives = 98/312 (31%), Gaps = 69/312 (22%)

Query: 417 IRFLSVSDNKLTGE----FPSSICNLSTIEYLNLSNNSLS--GM--IPQCLANFDSLSLL 468
           I   S+  + +T E      + +    +++ + LS N++       + + +A+   L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 469 DLRKNQFR----------GSIPQIFSKCYDLVALNLNDNELEGK----LPPSLANCGDLE 514
           +                   + Q   KC  L  + L+DN         L   L+    LE
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574
            L + NN +        A         L+  + +    N         P LR I   RN 
Sbjct: 126 HLYLHNNGLGPQAGAKIAR-------ALQELAVNKKAKNA--------PPLRSIICGRNR 170

Query: 575 FT---GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
                    A+ FQS + +       + +   N           +  +G++  +   L  
Sbjct: 171 LENGSMKEWAKTFQSHRLLHT-----VKM-VQNG----------IRPEGIEHLLLEGLAY 214

Query: 632 FTTI---DLSNNRF--EGM--IPKEVGKLSSLKLLNFSHNILRGE------IPVELTSLT 678
              +   DL +N F   G   +   +    +L+ L  +  +L                  
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 679 ALSVLNLSFNQL 690
            L  L L +N++
Sbjct: 275 GLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 45/292 (15%), Positives = 86/292 (29%), Gaps = 81/292 (27%)

Query: 440 TIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQF--RG--SIPQIFSKCYDLVA 491
           +IE  +L  ++++      +   L   DS+  + L  N         + +  +   DL  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 492 LNLNDN---ELEGKLPP-------SLANCGDLEVLDVGNNKIND----AFPYWTATLPRL 537
              +D     ++ ++P        +L  C  L  + + +N            + +    L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 538 QVLVLRSNSFHGP----------IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL 587
           + L L +N   GP              V    +  P LR I   RN            S+
Sbjct: 125 EHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------GSM 176

Query: 588 KAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRF--EGM 645
           K                                   +  +   +  T+ +  N    EG+
Sbjct: 177 KEWA--------------------------------KTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 646 ---IPKEVGKLSSLKLLNFSHNILRGE----IPVELTSLTALSVLNLSFNQL 690
              + + +     LK+L+   N         + + L S   L  L L+   L
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 77/526 (14%), Positives = 167/526 (31%), Gaps = 67/526 (12%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLS---------------FSYFSGIVPS 109
           +    +  +   +      ++   +F K+  + L                  Y    + +
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99

Query: 110 QISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS 169
             S  + L  + L     R          +AK+    + L+L + + FS     L  +++
Sbjct: 100 MSSSYTWLEEIRLK----RMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAA 153

Query: 170 A--SLISLSLGNCFLRGEFPIDIFHF----PFLRQLTLS-------DNGL--LTGNLPTS 214
              +L  L L    +       + HF      L  L +S        + L  L    P  
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN- 212

Query: 215 NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY------FDGQVPASLSNLKQL 268
                L+ L L+      K+   +     L+ L                +  +LS  K+L
Sbjct: 213 -----LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ-LPLSAFNLTQLSLLELSRNQFV 327
             L+   +      P V+   S+LT ++L++       L        +L  L +     +
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--I 325

Query: 328 GQLPCHA---SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
                     +C  L  L++     +  +      L T + LV + +   KL      + 
Sbjct: 326 EDAGLEVLASTCKDLRELRVFP--SEPFVMEPNVAL-TEQGLVSVSMGCPKLE----SVL 378

Query: 385 QWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
            +   ++++  L  +      + R    +        ++   L   F + + +   +  L
Sbjct: 379 YF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

Query: 445 NLSNNSLSGMIPQCLA-NFDSLSLLDLRKNQFRG-SIPQIFSKCYDLVALNLNDNELEGK 502
           +LS   L+  + + +      + +L +         +  + S C  L  L + D     K
Sbjct: 438 SLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

Query: 503 -LPPSLANCGDLEVLDVGNNKIND-AFPYWTATLPRLQVLVLRSNS 546
            L  + +    +  L + +  ++  A       +P+L V V+    
Sbjct: 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 60/485 (12%), Positives = 134/485 (27%), Gaps = 67/485 (13%)

Query: 45  LDLSSSWLLGTLHPNSTLFLL----HHLQKLNLA-CNDFNGTKISSNFGQFTKLTHLNLS 99
           + L    +      +  L L+     + + L L+ C  F+   +++       L  L+L 
Sbjct: 110 IRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164

Query: 100 FSYFSGIVPSQISRLSK----LVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQ 155
            S    +    +S        LV+L++S     ++        L      L+ L L+   
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCL--ASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 156 MFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN 215
               + + L       L  L  G                           + +G     +
Sbjct: 223 PLEKLATLLQRAP--QLEELGTGGYTA------------------EVRPDVYSGLSVALS 262

Query: 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF-DGQVPASLSNLKQLTVLNLE 274
               LR L          +P        L  L+L         +   L    +L  L + 
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322

Query: 275 DNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA 334
           D         +      L  + +        +      LT+  L+ +S            
Sbjct: 323 DYIEDAGLEVLASTCKDLRELRVFPSE--PFVMEPNVALTEQGLVSVSMG---------- 370

Query: 335 SCLPLSHLKLGGNFLDGRIPSWLFNLSTS-ENLVELDLSNNKLTGQIFQLDQWPVERISS 393
            C  L  +      +       L  ++ +  N+    L   +     +   +       +
Sbjct: 371 -CPKLESVLYFCRQMTNAA---LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426

Query: 394 V-----ELRHLDVQSNL----LQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEY 443
           +     +LR L +   L     + +    + ++  LSV+    +      +     ++  
Sbjct: 427 IVEHCKDLRRLSLSGLLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 444 LNLSNNSLSGM-IPQCLANFDSLSLLDLRKNQF-RGSIPQIFSKCYDLVALNLNDNELEG 501
           L + +       +    +  +++  L +       G+   +  K   L    +++     
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545

Query: 502 KLPPS 506
             P S
Sbjct: 546 SRPES 550

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
                 ++     L  LP  L      L +S+N L     +++   + +  LNL    L+
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCG 511
            +  Q       L  LDL  NQ + S+P +      L  L+++ N L   LP       G
Sbjct: 69  KL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124

Query: 512 DLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSN 545
           +L+ L +  N++               P+L+ L L +N
Sbjct: 125 ELQELYLKGNELKTLPPGLL----TPTPKLEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 53/213 (24%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 165 LNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILD 224
           +N    +L +L           P D+        L LS+N L T +L T    + L  L+
Sbjct: 15  VNCDKRNLTAL-----------PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 225 LSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD 284
           L   + + K+    G L  L  LDL        +P     L  LTVL++  N+ +     
Sbjct: 62  LDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 285 VFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHA-SCLP-LSH 341
               L +L  + L        LP        +L  L L+ N    +LP    + L  L  
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
           L L  N L   IP   F       L    L  N
Sbjct: 177 LLLQENSLY-TIPKGFFGSH---LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 33/197 (16%)

Query: 361 STSENLVELDLSNNKLTGQIFQLDQWPVERISS---VELRHLDVQSNLLQRLP---FILS 414
           S   + +E++     LT             +      +   L +  NLL        +  
Sbjct: 7   SKVASHLEVNCDKRNLT------------ALPPDLPKDTTILHLSENLLYTFSLATLMPY 54

Query: 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
           +R+  L++   +LT         L  +  L+LS+N L   +P       +L++LD+  N+
Sbjct: 55  TRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111

Query: 475 FRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNNKI----NDAFP 528
              S+P        +L  L L  NEL+  LPP L      LE L + NN +         
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLL- 168

Query: 529 YWTATLPRLQVLVLRSN 545
                L  L  L+L+ N
Sbjct: 169 ---NGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 18/184 (9%)

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG-QIFQLDQWPVERISSVELRHLD 400
           L L  N L            T   L +L+L   +LT  Q+           +   L  LD
Sbjct: 36  LHLSENLL-YTFSLATLMPYT--RLTQLNLDRAELTKLQVDG---------TLPVLGTLD 83

Query: 401 VQSNLLQRLPFILS--SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
           +  N LQ LP +      +  L VS N+LT     ++  L  ++ L L  N L  + P  
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 459 LANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLD 517
           L     L  L L  N     +P  + +   +L  L L +N L   +P        L    
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

Query: 518 VGNN 521
           +  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 65/234 (27%)

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQF 326
            T+L+L +N             ++LT+++L     T    L     L  L  L+LS NQ 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQL 89

Query: 327 VGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG---QIFQL 383
                                     +P     L     L  LD+S N+LT       + 
Sbjct: 90  Q------------------------SLPLLGQTLP---ALTVLDVSFNRLTSLPLGALR- 121

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443
                      EL+ L ++ N L+ LP                  G           +E 
Sbjct: 122 --------GLGELQELYLKGNELKTLP-----------------PGLLTP----TPKLEK 152

Query: 444 LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497
           L+L+NN+L+ +    L   ++L  L L++N    +IP+ F   + L    L+ N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 39/236 (16%), Positives = 64/236 (27%), Gaps = 61/236 (25%)

Query: 90  FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYL 149
               T L+LS +       + +   ++L  L+L          + T   +   L  L  L
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-------ELTKLQVDGTLPVLGTL 82

Query: 150 LLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLT 208
            L + Q    +P     L   +L  L +    L    P+        L++L L  N L T
Sbjct: 83  DLSHNQ-LQSLPLLGQTLP--ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138

Query: 209 GNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQL 268
                                    +P  +                            +L
Sbjct: 139 -------------------------LPPGL---------------LTP--------TPKL 150

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN 324
             L+L +N  +     +   L  L  + L   N    +P   F    L    L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLL-QENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 66/253 (26%)

Query: 456 PQC-LANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDL 513
           P C ++   S   ++  K     ++P  +     D   L+L++N L      +L     L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRL 57

Query: 514 EVLDVGNNKIN--DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
             L++   ++           TLP L  L L  N        ++P + +  P L ++D+S
Sbjct: 58  TQLNLDRAELTKLQVD----GTLPVLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVS 108

Query: 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631
            N  T L P    + L  +                                         
Sbjct: 109 FNRLTSL-PLGALRGLGEL----------------------------------------- 126

Query: 632 FTTIDLSNNRFEGMIPKEV-GKLSSLKLLNFSHNILRGEIPVEL-TSLTALSVLNLSFNQ 689
              + L  N  +  +P  +      L+ L+ ++N L  E+P  L   L  L  L L  N 
Sbjct: 127 -QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

Query: 690 LVGPIPQGKQFDS 702
           L   IP+G  F S
Sbjct: 184 LYT-IPKG-FFGS 194

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 18/144 (12%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS- 123
           L  L  L+L+ N      +         LT L++SF+  + +    +  L +L  L L  
Sbjct: 76  LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 124 ---SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNC 180
                +P                 +L  L L N  +  +    L  L   +L +L L   
Sbjct: 134 NELKTLPPGLLT---------PTPKLEKLSLANNNLTELPAGLLNGLE--NLDTLLLQEN 182

Query: 181 FLRGEFPIDIFHFPFLRQLTLSDN 204
            L    P   F    L    L  N
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 17/182 (9%)

Query: 202 SDNGLLT--GNLPTSNWSSPLRILDLSITKFSGKIPDTI-GNLRDLKFLDLYVCYFDGQV 258
           S   L     +LP+        +LDLS    S    +     L +L  L L   + +   
Sbjct: 26  SKQQLPNVPQSLPSY-----TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLS 317
             +   +  L  L+L  N        +F +L  L  + L + +    +  +AF ++ QL 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 318 LLELSRNQFVGQLPCHA----SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
            L LS+NQ   + P       + LP L  L L  N L  ++P        +     L L 
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLH 197

Query: 373 NN 374
           NN
Sbjct: 198 NN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 10/154 (6%)

Query: 402 QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLA 460
               L  +P  L S    L +S N L+          L+ +  L LS+N L+ +  +   
Sbjct: 26  SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85

Query: 461 NFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLDV 518
              +L  LDL  N    ++   +FS    L  L L +N +   +   +  +   L+ L +
Sbjct: 86  PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYL 143

Query: 519 GNNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
             N+I     +        LP+L +L L SN   
Sbjct: 144 SQNQISRFPVELIKDGNK-LPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 28/182 (15%)

Query: 353 IPSWLFNLSTSENLVELDLSNNKLT----GQIFQLDQWPVERISSVELRHLDVQSNLLQR 408
           +P  L           LDLS+N L+                      L  L +  N L  
Sbjct: 33  VPQSL-----PSYTALLDLSHNNLSRLRAEWTPT---------RLTNLHSLLLSHNHLNF 78

Query: 409 LP---FILSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQCLANFDS 464
           +    F+    +R+L +S N L       +  +L  +E L L NN +  +      +   
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 465 LSLLDLRKNQFRGSIPQIFSKCYDLVAL---NLNDNELEGKLPPSLANCGDL--EVLDVG 519
           L  L L +NQ      ++      L  L   +L+ N+L+      L          L + 
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 520 NN 521
           NN
Sbjct: 198 NN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 22/172 (12%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYF 103
           LDLS +  L  L    T   L +L  L L+ N      ISS  F     L +L+LS ++ 
Sbjct: 44  LDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHL 100

Query: 104 SGIVPSQISRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSV 159
             +     S L  L  L L       + R  F         +++ +L+ L L   Q+   
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF---------EDMAQLQKLYLSQNQISRF 151

Query: 160 VPSSLLNLSS-ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGN 210
               + + +    L+ L L +  L+     D+   P   +  L     L  N
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY----LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 31/161 (19%)

Query: 141 KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIF-HFPFLRQL 199
             LT L  LLL +  +  +   + + + +  L  L L +  L       +F     L  L
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPN--LRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 200 TLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVC---YFDG 256
            L +N               + ++D           +   ++  L+ L L       F  
Sbjct: 118 LLYNN--------------HIVVVD----------RNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISL 297
           ++    + L +L +L+L  N+           L    +  L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 8e-11
 Identities = 105/670 (15%), Positives = 187/670 (27%), Gaps = 190/670 (28%)

Query: 23  KDGDCC----SWDGIICDEMTGHVIGL---DLSSSWLLGTLHPNSTLFLLHHLQKLNLAC 75
            + DC         I+  E   H+I        +  L  TL           L K     
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-----------LSKQEEMV 79

Query: 76  NDFNGTKISSNFG-QFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
             F    +  N+    + +       S  + +   Q  RL     +    ++ R +    
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---- 135

Query: 135 TFNNLAKNLTELR---YLLLDNVQMF----SVVPSSLLNLSSASLIS--------LSLGN 179
            +  L + L ELR    +L+D   +     + V   +    S  +          L+L N
Sbjct: 136 PYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCL--SYKVQCKMDFKIFWLNLKN 191

Query: 180 CFLRGEFPIDI---FHFPFLRQLTLSDNGLLTGNLPTSNWSSPLR-------------IL 223
           C    E  +++     +      T   +      L   +  + LR             +L
Sbjct: 192 CN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFP 283
                           N+++ K  +     F+              +L     Q +    
Sbjct: 251 L---------------NVQNAKAWN----AFNLSCK---------ILLTTRFKQVT---- 278

Query: 284 DVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ-LSLLELSRNQFVGQLPCHA-SCLPLSH 341
           D     +  T ISL H +             +  SLL    +     LP    +  P   
Sbjct: 279 DFLSA-ATTTHISLDHHS-------MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-R 329

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDV 401
           L +    +   + +W       +N                 ++   +  I    L  L+ 
Sbjct: 330 LSIIAESIRDGLATW-------DNWK--------------HVNCDKLTTIIESSLNVLE- 367

Query: 402 QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLAN 461
                   P         LSV        FP S  ++ TI    +  + +   +   +  
Sbjct: 368 --------PAEYRKMFDRLSV--------FPPSA-HIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 462 FDSLSLLDLRKNQFRGSIPQIF----SKCYDLVAL--------NLNDN-ELEGKLPPS-- 506
               SL++ +  +   SIP I+     K  +  AL        N+    + +  +PP   
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 507 ----------LANCGDLE--------VLDVG--NNKINDAFPYWTATLPRLQVL-VLRSN 545
                     L N    E         LD      KI      W A+   L  L  L+  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-- 528

Query: 546 SFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNS 605
                 Y        P  E  +  I    F   LP +  ++L    + D   I L   + 
Sbjct: 529 -----FYKPYICDNDPKYERLVNAILD--F---LP-KIEENLICSKYTDLLRIALMAEDE 577

Query: 606 AGYDQYYSMI 615
           A +++ +  +
Sbjct: 578 AIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 9e-09
 Identities = 76/402 (18%), Positives = 130/402 (32%), Gaps = 114/402 (28%)

Query: 315 QLSLLELSRNQFV---GQLPCHASCLPLSHL---KLGGNFLDGRIPSWLFNLSTSENLVE 368
           + +LLEL   + V   G L    + + L      K+     D +I  WL NL  + N  E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKI-FWL-NLK-NCNSPE 196

Query: 369 LDLSN-NKLTGQIFQLDQWPVERISSVELRHLDVQ---SNLLQRLPF-----IL------ 413
             L    KL  QI        +  S+++LR   +Q     LL+  P+     +L      
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 414 --------SSRI----RFLSVSDNKLTGEFPSSIC------NLSTIE-------YLNLSN 448
                   S +I    RF  V+D  L+    + I        L+  E       YL+   
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 449 NSLS----GMIPQCLANF-----DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499
             L        P+ L+       D L+  D  K+     +  I     +     L   E 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----VLEPAEY 371

Query: 500 EGKLPPSLANCGDLEVL--DVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS 557
                        L V         I    P  T  L  +         +   I ++V  
Sbjct: 372 RKMFD-------RLSVFPPSA---HI----P--TILLSLI---------WFDVIKSDVMV 406

Query: 558 IKRPFPELRIIDISRNGFTGLLPARYFQSL-----KAMMHG------------DNDDIDL 600
           +     +  +++      T  +P+ Y +       +  +H             D+DD+  
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 601 DYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRF 642
            Y+     DQY+   + +   ++E    + +F  + L + RF
Sbjct: 467 PYL-----DQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRF 502

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 52/234 (22%), Positives = 77/234 (32%), Gaps = 61/234 (26%)

Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQF 326
              L+L+ N+ S      F  L+KL  + L        LP   F  L  L  L ++ N+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK- 96

Query: 327 VGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT---GQIFQL 383
                   +                 +P  +F+     NL EL L  N+L     ++F  
Sbjct: 97  ------LQA-----------------LPIGVFDQLV--NLAELRLDRNQLKSLPPRVFD- 130

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443
                   S  +L +L +  N LQ LP                  G F      L++++ 
Sbjct: 131 --------SLTKLTYLSLGYNELQSLP-----------------KGVFDK----LTSLKE 161

Query: 444 LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497
           L L NN L  +          L  L L  NQ +      F     L  L L +N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 21/190 (11%)

Query: 365 NLVELDLSNNKLT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIR 418
           +  +LDL +NKL+    + F             +LR L +  N LQ LP   F     + 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFH---------RLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 419 FLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477
            L V+DNKL    P  +   L  +  L L  N L  + P+   +   L+ L L  N+ + 
Sbjct: 89  TLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146

Query: 478 SIPQ-IFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNNKINDAFPYWTATLP 535
           S+P+ +F K   L  L L +N+L+ ++P        +L+ L + NN++         +L 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 536 RLQVLVLRSN 545
           +L++L L+ N
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
           +     +D  S  L  +P  + +  + L +  NKL+     +   L+ +  L L++N L 
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEGKLPP----SL 507
            +         +L  L +  N+ + ++P  +F +  +L  L L+ N+L+  LPP    SL
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSL 132

Query: 508 ANCGDLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSN 545
                L  L +G N++       F      L  L+ L L +N
Sbjct: 133 TK---LTYLSLGYNELQSLPKGVF----DKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 28/191 (14%)

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT---GQIFQLDQWPVERISSVELRH 398
           L L  N L   +PS  F+  T   L  L L++NKL      IF+             L  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLT--KLRLLYLNDNKLQTLPAGIFK---------ELKNLET 89

Query: 399 LDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGM 454
           L V  N LQ LP   F     +  L +  N+L    P  +  +L+ + YL+L  N L   
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-S 147

Query: 455 IPQCLANFDSLS---LLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANC 510
           +P+ +  FD L+    L L  NQ +  +P+  F K  +L  L L++N+L+     +  + 
Sbjct: 148 LPKGV--FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 511 GDLEVLDVGNN 521
             L++L +  N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 142 NLTELRYLLLDNVQMFSV---VPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF-LR 197
            LT+LR L L++ ++ ++   +   L NL +     L + +  L+   PI +F     L 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLET-----LWVTDNKLQ-ALPIGVFDQLVNLA 112

Query: 198 QLTLSDNGLLTGNLPTSNWSS--PLRILDLSITKFSGKIPDTI-GNLRDLKFLDLYVCYF 254
           +L L  N L +  LP   + S   L  L L   +    +P  +   L  LK L LY    
Sbjct: 113 ELRLDRNQLKS--LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169

Query: 255 DGQVPASL-SNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299
             +VP      L +L  L L++NQ        F +L KL  + L  
Sbjct: 170 -KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 65  LHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123
           L +L +L L  N      +    F   TKLT+L+L ++    +      +L+ L  L L 
Sbjct: 108 LVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165

Query: 124 S----DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLS 176
           +     +P   F+          LTEL+ L LDN Q+  V   +  +L    ++ L 
Sbjct: 166 NNQLKRVPEGAFD---------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 76/515 (14%), Positives = 157/515 (30%), Gaps = 69/515 (13%)

Query: 90  FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYL 149
           F  L  L L     + +           V   ++               ++ NL +L+ +
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE--------------ISNNLRQLKSV 117

Query: 150 LLDNVQMFSVVPSSLLNLSSA---SLISLSLGNCFLRGEFPIDIF--HFPFLRQLTLSDN 204
               +    V    L  L+ A    L +L L  C       +     H   ++ L + ++
Sbjct: 118 HFRRM---IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174

Query: 205 GLLTGNLPT----SNWSSPLRILDLSITKFSGKIPDTI----GNLRDLKFLDLYVCYF-- 254
                +       +  ++ L +L+  +T+F+   P  +     N R L  + +       
Sbjct: 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234

Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLT 314
                 + +NL++    +L ++    E         KL R+ L+++     +P+      
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAA 293

Query: 315 QLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
           Q+  L+L       +  C     C  L  L+      D             + L  L + 
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR---GLEVLAQYCKQLKRLRIE 350

Query: 373 NNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE-- 430
                    Q  +     +S   L  L   +   Q L         +++V  + +T E  
Sbjct: 351 RGAD----EQGMEDEEGLVSQRGLIAL---AQGCQEL--------EYMAVYVSDITNESL 395

Query: 431 --FPSSICNLSTIEYLNLSNNS------LSGMIPQCLANFDSLSLLDLRKNQFR---GSI 479
               + + NL     + L          L   +   L     L        Q       +
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 480 PQIFSKCYDLVALNLNDNELEGK-LPPSLANCGDLEVLDVGNNKINDAFPYWTAT-LPRL 537
             I     ++  + L       + L      C +L+ L++     ++       T LP L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515

Query: 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR 572
           + L ++         + +  + RP+  + +I   R
Sbjct: 516 RYLWVQGYRASMTGQDLM-QMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 38/325 (11%), Positives = 90/325 (27%), Gaps = 46/325 (14%)

Query: 46  DLSSSWLLGTLHPNSTLFLLHHLQKLN-LACNDFNGTKISSNFGQFTKLTHLNLSF-SYF 103
           +     L   +        L   +KL  L  +     ++   F    ++  L+L +    
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 104 SGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSS 163
           +    + I +   L  L+  + I            LA+   +L+ L ++       +   
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVI-----GDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361

Query: 164 LLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLS-----DNGL--LTGNLPTSNW 216
              +S   LI+L+ G                 L  + +      +  L  +   L     
Sbjct: 362 EGLVSQRGLIALAQG--------------CQELEYMAVYVSDITNESLESIGTYLKN--- 404

Query: 217 SSPLRILDLS-ITKFSGKIPDT-----IGNLRDLKFLDLYVCYF---DGQVPASLSNLKQ 267
               R++ L    + +    D      +   + L+    Y+      D  +         
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 268 LTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAHLNFTGQ-LPLSAFNLTQLSLLELSRNQ 325
           +  + L     S E   +       L ++ +    F+ + +  +   L  L  L +   +
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524

Query: 326 F----VGQLPCHASCLPLSHLKLGG 346
                   +        +  +    
Sbjct: 525 ASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 41/257 (15%), Positives = 80/257 (31%), Gaps = 24/257 (9%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           L       +G             ++KL+L           +   +   L  L        
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331

Query: 105 GIVPSQISRLSKLVALDLSS-------DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQM- 156
             +        +L  L +         +       Q     LA+   EL Y+ +    + 
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391

Query: 157 ---FSVVPSSLLNLSSASLISLSLGNCFLRGEFPID------IFHFPFLRQLTLSDN-GL 206
                 + + L NL    L  + L       + P+D      +     LR+       G 
Sbjct: 392 NESLESIGTYLKNLCDFRL--VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449

Query: 207 LT--GNLPTSNWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYF-DGQVPASL 262
           LT  G      +S  +R + L     S + + +      +L+ L++  C F +  + A++
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509

Query: 263 SNLKQLTVLNLEDNQFS 279
           + L  L  L ++  + S
Sbjct: 510 TKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 45/341 (13%), Positives = 91/341 (26%), Gaps = 42/341 (12%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
              L  + +   DF   ++   F     L             +P +   L     L    
Sbjct: 219 CRSLVSVKV--GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSA--SLISLSLGNCFL 182
                  E       A  + +L      ++    +       L     +L  L   N   
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKL------DLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Query: 183 RGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP------------LRILDLSITKF 230
                +   +   L++L +       G        S             L  + + ++  
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

Query: 231 SGKIPDTIG----NLRDLKFLDLYVCY------FDGQVPASLSNLKQLTVLNLEDNQFSG 280
           + +  ++IG    NL D + + L           D  V + L   K+L           G
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QG 448

Query: 281 EFPD-----VFGNLSKLTRISLAHLNFTGQ-LPLSAFNLTQLSLLELSRNQFVGQ-LPCH 333
              D     +      +  + L ++  + + L   +     L  LE+    F  + +   
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 334 ASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN 373
            + LP L +L + G          +       N+  +    
Sbjct: 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L      +  +  +++  L   ++L LS N++  +    L+  ++L +L L +N  +  I
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KI 85

Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT-ATLPRLQ 538
             + +    L  L ++ N++   L   +    +L VL + NNKI +       A L +L+
Sbjct: 86  ENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 539 VLVLRSNSFHGPIYNNVPSIKRP----------FPELRIID 569
            L+L  N    P+YN+                  P L+ +D
Sbjct: 144 DLLLAGN----PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 359 NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS-VELRHLDVQSNLLQRLPFI--LSS 415
            LST +    L LS N +           +  +S    LR L +  NL++++  +  ++ 
Sbjct: 43  TLSTLKACKHLALSTNNIEK---------ISSLSGMENLRILSLGRNLIKKIENLDAVAD 93

Query: 416 RIRFLSVSDNKLTGEFPSSICNLST---IEYLNLSNNSLSGMIP-QCLANFDSLSLLDLR 471
            +  L +S N++     +S+  +     +  L +SNN ++       LA  D L  L L 
Sbjct: 94  TLEELWISYNQI-----ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Query: 472 KNQF 475
            N  
Sbjct: 149 GNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 38/193 (19%), Positives = 57/193 (29%), Gaps = 31/193 (16%)

Query: 59  NSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV 118
                +    +K+ L        K+ +         HL LS +    I  S +S +  L 
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLR 73

Query: 119 ALDLSS-DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS-ASLISLS 176
            L L    I           NL      L  L +   Q+     +SL  +    +L  L 
Sbjct: 74  ILSLGRNLI-------KKIENLDAVADTLEELWISYNQI-----ASLSGIEKLVNLRVLY 121

Query: 177 LGNCFLRGEFPIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP 235
           + N  +     ID       L  L L+ N              PL          S    
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGN--------------PLYNDYKENNATSEYRI 167

Query: 236 DTIGNLRDLKFLD 248
           + +  L +LK LD
Sbjct: 168 EVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 40/153 (26%)

Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS 317
           + A+LS LK    L L  N                    ++ L+           +  L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE----------------KISSLS----------GMENLR 73

Query: 318 LLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT 377
           +L L RN         A    L  L +  N +     + L  +    NL  L +SNNK+T
Sbjct: 74  ILSLGRNLIKKIENLDAVADTLEELWISYNQI-----ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 378 --GQIFQLDQWPVERISSVELRHLDVQSNLLQR 408
             G+I +L           +L  L +  N L  
Sbjct: 129 NWGEIDKLAALD-------KLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 39/184 (21%)

Query: 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF 282
           L   I     K+  T+  L+  K L L       +  +SLS ++ L +L+L  N      
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIK--- 83

Query: 283 PDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHL 342
                NL  +   +L  L       +S   +  LS +E                + L  L
Sbjct: 84  --KIENLDAVAD-TLEELW------ISYNQIASLSGIE--------------KLVNLRVL 120

Query: 343 KLGGNFLDGRIPSW--LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVE----L 396
            +  N    +I +W  +  L+  + L +L L+ N L     + +     RI  V+    L
Sbjct: 121 YMSNN----KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

Query: 397 RHLD 400
           + LD
Sbjct: 177 KKLD 180

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 252 CYFDG--QVPASLSNLKQLTVLNLEDNQFSGEFPD-VFGNLSKLTRISLAHLNFTGQLPL 308
           C  DG       L   + LT L +E+ Q            L +L  +++   +    +  
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAP 73

Query: 309 SAF-NLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350
            AF    +LS L LS N            L L  L L GN L 
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP-QCLANFDSLSLLDLRKNQFRGSIPQIF 483
                +    +     +  L + N      +  + L     L  L + K+  R   P  F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524
                L  LNL+ N LE  L         L+ L +  N ++
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 107 VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLN 166
               +     L  L + +       E        + L ELR L +    +  V P +   
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDL----RGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 167 LSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGL 206
                L  L+L    L             L++L LS N L
Sbjct: 79  TP--RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 355 SWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---F 411
             L +L  +ENL EL + N +    +  L+   +  +    LR+L +  + L+ +    F
Sbjct: 22  DSLHHLPGAENLTELYIENQQ---HLQHLELRDLRGLGE--LRNLTIVKSGLRFVAPDAF 76

Query: 412 ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
             + R+  L++S N L      ++  LS ++ L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 39/140 (27%)

Query: 283 PDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLPLSH 341
                    LT + + +      L L     L +L  L + ++     +   A       
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA----FHF 78

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDV 401
                                   L  L+LS N L            + +  + L+ L +
Sbjct: 79  TP---------------------RLSRLNLSFNALESL-------SWKTVQGLSLQELVL 110

Query: 402 QSNLLQRLPFILSSRIRFLS 421
             N     P   S  +R+L 
Sbjct: 111 SGN-----PLHCSCALRWLQ 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFV 327
           T + LE N      P  F    KL RI L++ N   +L   AF  L  L+ L L  N+  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 328 GQLPCHASCLP---------LSHLKLGGNFLDGRIPSWLF-NLSTSENLVELDLSNNKLT 377
                  + LP         L  L L  N +   +    F +L    NL  L L +NKL 
Sbjct: 93  -------TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLH---NLNLLSLYDNKLQ 141

Query: 378 GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLS 421
                + +     + +  ++ + +  N     PFI    +++L+
Sbjct: 142 ----TIAKGTFSPLRA--IQTMHLAQN-----PFICDCHLKWLA 174

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 400 DVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCL 459
           D +   L  +P  L   I  + +  N +    P +      +  ++LSNN +S + P   
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 460 ANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLD 517
               SL+ L L  N+    +P+ +F   + L  L LN N++   L   +  +  +L +L 
Sbjct: 77  QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 518 VGNNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
           + +NK+       F    + L  +Q + L  N F 
Sbjct: 135 LYDNKLQTIAKGTF----SPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 69  QKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS---- 123
            ++ L  N      I    F  + KL  ++LS +  S + P     L  L +L L     
Sbjct: 35  TEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR 183
           +++P++ F         + L  L+ LLL+  ++  +   +  +L   +L  LSL +  L+
Sbjct: 93  TELPKSLF---------EGLFSLQLLLLNANKINCLRVDAFQDLH--NLNLLSLYDNKLQ 141

Query: 184 GEFPIDIF-HFPFLRQLTLSDN 204
                  F     ++ + L+ N
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQN 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 43/188 (22%)

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFV 327
             L+L+    +      F  L+KLT ++L   N    L    F+ LT+L  L L+ NQ  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLANNQ-- 94

Query: 328 GQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG---QIFQLD 384
                         L          +P  +F+  T   L +L L  N+L      +F   
Sbjct: 95  --------------LA--------SLPLGVFDHLT--QLDKLYLGGNQLKSLPSGVFD-- 128

Query: 385 QWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441
                     +L+ L + +N LQ +P   F   + ++ LS+S N+L      +   L  +
Sbjct: 129 -------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181

Query: 442 EYLNLSNN 449
           + + L  N
Sbjct: 182 QTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 49/146 (33%), Positives = 62/146 (42%), Gaps = 22/146 (15%)

Query: 242 RDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLN 301
            D + LDL          A+   L +LT LNL+ NQ       VF +L++L  + L   N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL-ANN 93

Query: 302 FTGQLPLSAF-NLTQLSLLELSRNQFVGQLPCHASCLP---------LSHLKLGGNFLDG 351
               LPL  F +LTQL  L L  NQ           LP         L  L+L  N L  
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQL--------KSLPSGVFDRLTKLKELRLNTNQL-Q 144

Query: 352 RIPSWLFNLSTSENLVELDLSNNKLT 377
            IP+  F+  T  NL  L LS N+L 
Sbjct: 145 SIPAGAFDKLT--NLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 18/135 (13%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L +    L     ++   L+ + +LNL  N L  +      +   L  L L  NQ   S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 480 PQ-IFSKCYDLVALNLNDNELEGKLPP----SLANCGDLEVLDVGNNKI----NDAFPYW 530
           P  +F     L  L L  N+L+  LP      L     L+ L +  N++      AF   
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTNQLQSIPAGAF--- 151

Query: 531 TATLPRLQVLVLRSN 545
              L  LQ L L +N
Sbjct: 152 -DKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELE 500
           E L+L +  L+ +          L+ L+L  NQ + ++   +F    +L  L L +N+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 501 GKLPP----SLANCGDLEVLDVGNNKI----NDAFPYWTATLPRLQVLVLRSN 545
             LP      L     L+ L +G N++    +  F      L +L+ L L +N
Sbjct: 97  -SLPLGVFDHLTQ---LDKLYLGGNQLKSLPSGVF----DRLTKLKELRLNTN 141

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 247 LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQL 306
           L L    F   VP  LSN K LT+++L +N+ S      F N+++L  + L++ N    +
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCI 93

Query: 307 PLSAFN-LTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLD 350
           P   F+ L  L LL L  N  +  +P  A      LSHL +G N L 
Sbjct: 94  PPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
           L +  N+ T   P  + N   +  ++LSNN +S +  Q  +N   L  L L  N+ R  I
Sbjct: 36  LYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 480 PQ-IFSKCYDLVALNLNDNEL 499
           P   F     L  L+L+ N++
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDI 114

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 23/144 (15%)

Query: 437 NLSTIEYLNLSNNSLS-GMIPQCLANFDSLSLLDLRKNQFRGSIPQI--FSKCYDLVALN 493
             + +  L L N   + G I    A F +L  L L        +  +    K   L  L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLE 77

Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT-----ATLPRLQVLVLRSNSFH 548
           L++N + G L        +L  L++  NK+ D     +       L  L+ L L +    
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD----ISTLEPLKKLECLKSLDLFNC--- 130

Query: 549 GPIYNNV---PSIKRPFPELRIID 569
             + N      S+ +  P+L  +D
Sbjct: 131 -EVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 36/159 (22%)

Query: 390 RISSVELRHLDVQSNLLQRLPFILSSR--IRFLSVSDNKLTGEFPSSICNLST---IEYL 444
             ++V    LD   +   ++  + +    + FLS+ +  L      S+ NL     ++ L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
            LS N + G +        +L+ L+L  N+ +                +++  E      
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK----------------DISTLE------ 114

Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWT---ATLPRLQVL 540
             L     L+ LD+ N ++ +   Y       LP+L  L
Sbjct: 115 -PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 218 SPLRILDLSITKFS-GKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDN 276
           + +R L L   K + GKI        +L+FL L          ++L  L +L  L L +N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSEN 81

Query: 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRN 324
           +  G    +   L  LT ++L+         L     L  L  L+L   
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 51/304 (16%), Positives = 99/304 (32%), Gaps = 57/304 (18%)

Query: 260 ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLL 319
              S    +T L+L  N                T  S+  LN      LS  +L   +  
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN------LSGNSLGFKNSD 69

Query: 320 ELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSEN--LVELDLSNNKLT 377
           EL   Q +  +P +     ++ L L GNFL  +    L     +    +  LDL  N  +
Sbjct: 70  ELV--QILAAIPAN-----VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 378 GQIFQLDQWPVERISSV------ELRHLDVQSNLL-----QRLPFILSS---RIRFLSVS 423
            +                      +  L+++ N L       L  IL++    +  L++ 
Sbjct: 123 SKS-------SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 424 DNKLTGEFPSSICNL-----STIEYLNLSNNSL--SGMIPQCLA---NFDSLSLLDLRKN 473
            N L  +  + +        +++  L+LS N L                + +  L+L  N
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 474 QFRGS----IPQIFSKCYDLVALNLNDNELEGK-------LPPSLANCGDLEVLDVGNNK 522
              G     +  +      L  + L+ + ++         L  +  N   + ++D    +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 523 INDA 526
           I+ +
Sbjct: 296 IHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 48/256 (18%), Positives = 80/256 (31%), Gaps = 46/256 (17%)

Query: 360 LSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV------ELRHLDVQSNLL-----QR 408
            S    +  LDLS N L              +          +  L++  N L       
Sbjct: 18  TSIPHGVTSLDLSLNNLYSIS-------TVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 409 LPFILSS---RIRFLSVSDNKLTGEFPSSICNL-----STIEYLNLSNNSLSGMIPQCLA 460
           L  IL++    +  L++S N L+ +    +         TI  L+L  N  S        
Sbjct: 71  LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130

Query: 461 -----NFDSLSLLDLRKNQFRGSIPQIFSKC-----YDLVALNLNDNELEGKLPPSLA-- 508
                   S++ L+LR N           +       ++ +LNL  N L  K    LA  
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190

Query: 509 ---NCGDLEVLDVGNNKINDA-FPYWTATL----PRLQVLVLRSNSFHGPIYNNVPSIKR 560
                  +  LD+  N +    +             +  L L  N  HGP   N+  +K 
Sbjct: 191 LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250

Query: 561 PFPELRIIDISRNGFT 576
               L+ + +  +   
Sbjct: 251 SLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 61/343 (17%), Positives = 108/343 (31%), Gaps = 77/343 (22%)

Query: 196 LRQLTLSDNGL-------LTGNLPTSNWSSPLRILDLSITKFSGKIPDTIG-----NLRD 243
           +  L LS N L       L      +  S  +  L+LS      K  D +         +
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPAS--VTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 244 LKFLDLYVCYFDGQ-----VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298
           +  L+L   +   +     V    +    +TVL+L  N FS +    F         S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 299 HLNFTG-QLP----------LSAFNLTQLSLLELSRNQF----VGQLPCHASCLP----- 338
            LN  G  L           L+A     ++ L L  N        +L   A  L      
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCAEL---AKFLASIPAS 197

Query: 339 LSHLKLGGNFLDGRIPSWLFNL--STSENLVELDLSNNKLTGQIFQLDQWPVERISSVE- 395
           ++ L L  N L  +  + L  +  S   ++V L+L  N L G         +E +  ++ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-------LENLKLLKD 250

Query: 396 ----LRHLDVQSNLLQRL----------PFILSSRIRFLSVSDNKLTGEFPSSICNL--- 438
               L+ + +  ++++ +           F    +I  +  +  ++       I NL   
Sbjct: 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310

Query: 439 --STIEYLNLSNNSLS-----GMIPQCLANFDSLSLLDLRKNQ 474
                +  +L N  L          + L   D L         
Sbjct: 311 LSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 11/138 (7%)

Query: 437 NLSTIEYLNLSNNSLS-GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
             S ++ L L N+  + G +      F+ L  L         SI     K   L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKIND-AFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
           DN + G L      C +L  L++  NKI D +       L  L+ L L +      + N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTNL 128

Query: 555 V---PSIKRPFPELRIID 569
                ++ +  P+L  +D
Sbjct: 129 NDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 364 ENLVELDLSNNKLT-GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLS 421
            ++ EL L N++   G++  L           EL  L   +  L  +  +   ++++ L 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDE------FEELEFLSTINVGLTSIANLPKLNKLKKLE 70

Query: 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM-IPQCLANFDSLSLLDLRKN 473
           +SDN+++G           + +LNLS N +  +   + L   ++L  LDL   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 218 SPLRILDLSITKFS-GKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDN 276
           S ++ L L  ++ + GK+        +L+FL            A+L  L +L  L L DN
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELSDN 74

Query: 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQL----PLSAF-NLTQLSLLE 320
           + SG    +      LT ++L+  N    L    PL    NL  L L  
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFN 122

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 56/300 (18%), Positives = 101/300 (33%), Gaps = 41/300 (13%)

Query: 19  KSWNK---DGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHH------LQ 69
           K W +   D        +    +   V G  LS   +      +     L        +Q
Sbjct: 37  KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQ 96

Query: 70  KLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRT 129
            ++L+ +    + +     Q +KL +L+L     S  + + +++ S LV L+LS     +
Sbjct: 97  HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC---S 153

Query: 130 KFEQHTFNNLAKNLTELRYLLLDNVQMFSVVP-SSLLNLSSASLISLSLGNC--FLRGEF 186
            F +     L  + + L  L L     F+       +   S ++  L+L      L+   
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213

Query: 187 PIDIF-HFPFLRQLTLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKIPDT----IGN 240
              +    P L  L LSD+ +L  +     +    L+ L LS       I       +G 
Sbjct: 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS---RCYDIIPETLLELGE 270

Query: 241 LRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHL 300
           +  LK L ++    DG +      L  L +                 N S  T I+   +
Sbjct: 271 IPTLKTLQVFGIVPDGTLQLLKEALPHLQI-----------------NCSHFTTIARPTI 313

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 23/147 (15%)

Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI--FSKCYDLV 490
           +   N      L+L    +  +I    A  D    +D   N+    I ++  F     L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE----IRKLDGFPLLRRLK 67

Query: 491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT-----ATLPRLQVLVLRSN 545
            L +N+N +            DL  L + NN + +           A+L  L  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE----LGDLDPLASLKSLTYLCILRN 123

Query: 546 SFHGPIYNNV---PSIKRPFPELRIID 569
               P+ N       +    P++R++D
Sbjct: 124 ----PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 359 NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFI-LSSRI 417
             + +    ELDL   K+   I  L     +         +D   N +++L    L  R+
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQ------FDAIDFSDNEIRKLDGFPLLRRL 66

Query: 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM-IPQCLANFDSLSLLDLRKN 473
           + L V++N++          L  +  L L+NNSL  +     LA+  SL+ L + +N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 402 QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLA 460
            +  L ++P  +      L +++N+ T    + I   L  +  +N SNN ++ +      
Sbjct: 19  SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 461 NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLDVG 519
               ++ + L  N+      ++F     L  L L  N +   +   S      + +L + 
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY 137

Query: 520 NNKI----NDAFPYWTATLPRLQVLVLRSNSFH 548
           +N+I      AF     TL  L  L L +N F+
Sbjct: 138 DNQITTVAPGAF----DTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 24/126 (19%)

Query: 260 ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSL 318
                L QL  +N  +N+ +      F   S +  I L   N    +    F  L  L  
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLESLKT 109

Query: 319 LELSRNQFVGQLPCHASCLP---------LSHLKLGGNFLDGRIPSWLF-NLSTSENLVE 368
           L L  N+         +C+          +  L L  N +   +    F  L    +L  
Sbjct: 110 LMLRSNRI--------TCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLH---SLST 157

Query: 369 LDLSNN 374
           L+L  N
Sbjct: 158 LNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 22/143 (15%)

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLS 421
              EL L+NN+ T     L+   + +    +LR ++  +N +  +    F  +S +  + 
Sbjct: 33  YTAELRLNNNEFT----VLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 422 VSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQCLAN--FDSLS---LLDLRKNQF 475
           ++ N+L       +   L +++ L L +N +      C+ N  F  LS   LL L  NQ 
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRI-----TCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 476 RGSIPQ-IFSKCYDLVALNLNDN 497
             ++    F   + L  LNL  N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 319 LELSRNQFVGQLPCHASCLPLSHLK---LGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
           L L+ N+F   L        L  L+      N +   I    F  ++   + E+ L++N+
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS--GVNEILLTSNR 92

Query: 376 LT---GQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTG 429
           L     ++F+             L+ L ++SN +  +    FI  S +R LS+ DN++T 
Sbjct: 93  LENVQHKMFK---------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

Query: 430 EFPSSICNLSTIEYLNLSNN 449
             P +   L ++  LNL  N
Sbjct: 144 VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 69  QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS----S 124
            +L L  N+F   + +  F +  +L  +N S +  + I        S +  + L+     
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
           ++    F         K L  L+ L+L + ++  V   S + LS  S+  LSL +  +  
Sbjct: 95  NVQHKMF---------KGLESLKTLMLRSNRITCVGNDSFIGLS--SVRLLSLYDNQIT- 142

Query: 185 EFPIDIF-HFPFLRQLTLSDN 204
                 F     L  L L  N
Sbjct: 143 TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 53  LGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLTHLNLSFSYFSGIVPSQI 111
              L        L  L+K+N + N    T I    F   + +  + L+ +    +     
Sbjct: 44  FTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101

Query: 112 SRLSKLVALDLS----SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNL 167
             L  L  L L     + +    F           L+ +R L L + Q+ +V P +   L
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFI---------GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 168 SSASLISL 175
            S S ++L
Sbjct: 153 HSLSTLNL 160

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 40/196 (20%)

Query: 197 RQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLY------ 250
            +  L    +      T N  + +  +  + +         I  L ++++L L       
Sbjct: 22  IKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 251 VCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSA 310
           +             L  LT L L  NQ       VF  L+ L  + L   N    LP   
Sbjct: 78  ISALKE--------LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-VENQLQSLPDGV 128

Query: 311 FN-LTQLSLLELSRNQFVGQLPCHASCLP---------LSHLKLGGNFLDGRIPSWLFNL 360
           F+ LT L+ L L+ NQ           LP         L+ L L  N L   +P  +F+ 
Sbjct: 129 FDKLTNLTYLNLAHNQL--------QSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDK 179

Query: 361 STSENLVELDLSNNKL 376
            T   L +L L  N+L
Sbjct: 180 LT--QLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 393 SVELRHLDVQSNLLQRLP-FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451
             E    +++   +         + I  +  +++ +       I  L  + YL L  N L
Sbjct: 18  FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKL 75

Query: 452 SGMIPQCLANFDSLS---LLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP--- 505
                  ++    L+    L L  NQ +     +F K  +L  L L +N+L+  LP    
Sbjct: 76  -----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVF 129

Query: 506 -SLANCGDLEVLDVGNNKI 523
             L N   L  L++ +N++
Sbjct: 130 DKLTN---LTYLNLAHNQL 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 53/196 (27%)

Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSR 323
           L  +  L L  N+           L+ LT + L   N    LP   F+ LT L  L L  
Sbjct: 62  LPNVRYLALGGNKLHD--ISALKELTNLTYLIL-TGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 324 NQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG---QI 380
           NQ                           +P  +F+  T  NL  L+L++N+L      +
Sbjct: 119 NQLQ------------------------SLPDGVFDKLT--NLTYLNLAHNQLQSLPKGV 152

Query: 381 FQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLT----GEFPS 433
           F              L  LD+  N LQ LP   F   ++++ L +  N+L     G F  
Sbjct: 153 FD---------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD- 202

Query: 434 SICNLSTIEYLNLSNN 449
               L++++Y+ L +N
Sbjct: 203 ---RLTSLQYIWLHDN 215

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 221 RILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ---VPASLSN-LKQLTVLNLEDN 276
             LDL               L  L  L L       +   +P  + N L  LT LNL  N
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLG----GNKLQSLPNGVFNKLTSLTYLNLSTN 86

Query: 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQ 325
           Q       VF  L++L  ++L + N    LP   F+ LTQL  L L +NQ
Sbjct: 87  QLQSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 24/143 (16%)

Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302
              +LDL               L  LT L L  N+       VF  L+ LT ++L   N 
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL-STNQ 87

Query: 303 TGQLPLSAFN-LTQLSLLELSRNQFVGQLPCHASCLP---------LSHLKLGGNFLDGR 352
              LP   F+ LTQL  L L+ NQ           LP         L  L+L  N L   
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQL--------QSLPDGVFDKLTQLKDLRLYQNQLK-S 138

Query: 353 IPSWLF-NLSTSENLVELDLSNN 374
           +P  +F  L+   +L  + L +N
Sbjct: 139 VPDGVFDRLT---SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 42/147 (28%)

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFV 327
           T L+LE N        VF  L+ LT++ L   N    LP   FN LT L+ L LS NQ  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYL-GGNKLQSLPNGVFNKLTSLTYLNLSTNQ-- 87

Query: 328 GQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT----GQIFQL 383
                         L+         +P+ +F+  T   L EL L+ N+L     G   +L
Sbjct: 88  --------------LQ--------SLPNGVFDKLT--QLKELALNTNQLQSLPDGVFDKL 123

Query: 384 DQWPVERISSVELRHLDVQSNLLQRLP 410
                      +L+ L +  N L+ +P
Sbjct: 124 ----------TQLKDLRLYQNQLKSVP 140

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302
           + + L L+        P    +L  L  L L  NQ       VF +L++LT + L   N 
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL-GTNQ 99

Query: 303 TGQLPLSAFN-LTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLF-N 359
              LP + F+ L  L  L +  N+   +LP     L  L+HL L  N L   IP   F  
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDR 157

Query: 360 LSTSENLVELDLSNN 374
           LS   +L    L  N
Sbjct: 158 LS---SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 17/154 (11%)

Query: 400 DVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM---IP 456
           D +S     +P  + +  + L + DN++T   P    +L  ++ L L +N L  +   + 
Sbjct: 25  DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84

Query: 457 QCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEV 515
             L     L++LDL  NQ    +P  +F +   L  L +  N+L  +LP  +     L  
Sbjct: 85  DSLTQ---LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139

Query: 516 LDVGNNKI----NDAFPYWTATLPRLQVLVLRSN 545
           L +  N++    + AF      L  L    L  N
Sbjct: 140 LALDQNQLKSIPHGAF----DRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELS 322
            L  L  L L+ NQ +G  P+ F   S +  + L   N   ++    F  L QL  L L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLY 110

Query: 323 RNQ 325
            NQ
Sbjct: 111 DNQ 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 28/62 (45%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSR 323
           L QLT L+L  NQ       VF  L+KLT + L H N    LP   F  LTQL  L L  
Sbjct: 51  LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNGVFDKLTQLKELALDT 109

Query: 324 NQ 325
           NQ
Sbjct: 110 NQ 111

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 22/116 (18%)

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFV 327
           T L LE N+       VF  L++LT++SL+  N    LP   F+ LT+L++L L  N+  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKL- 88

Query: 328 GQLPCHASCLP---------LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
                    LP         L  L L  N L   +P  +F+  TS  L ++ L  N
Sbjct: 89  -------QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTS--LQKIWLHTN 134

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 14/181 (7%)

Query: 237 TIGNLRDLKFLDLYVCY-FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295
                 D+ F +  + +     +   L  +  L  L ++             NL  L  I
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EI 200

Query: 296 SLAHLNFTGQLPLSAFNLTQLSLLELSRN----------QFVGQLPCHASCLPLSHLKLG 345
               L  +    +   +L  L  L L                  L        L  L + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 346 GNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNL 405
                  +            L  +D+S   LT +  +L    V++I    L+ ++++ N 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH--LKFINMKYNY 318

Query: 406 L 406
           L
Sbjct: 319 L 319

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
            + +  L     +      S   + S  + L+L                  L+      +
Sbjct: 103 HTILNELKPEQVEQLKLIMSKRYDGSQ-QALDLKGLRSDP-DLVAQNIDVVLNRR----S 156

Query: 474 QFRGSIPQIFSKCYDLVALNLNDNELEG--KLPPSLANCGDLEVLDVGNNKINDAFPYWT 531
               ++  I     +L++LNL++N L     +   +    +L++L++  N++        
Sbjct: 157 CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216

Query: 532 ATLPRLQVLVLRSNSFHGPIY---NNVPSIKRPFPELRIID 569
               +L+ L L  NS           + +I+  FP+L  +D
Sbjct: 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQ 325
            VL L DNQ +   P VF  L++LTR+ L   N    LP   F+ LTQL+ L L+ NQ
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRNQ 325
             L L +NQ +   P VF +L  L ++   + N    +P   F  LTQL+ L+L+ N 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	801
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.2

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.3e-86  Score=783.52  Aligned_cols=650  Identities=30%  Similarity=0.427  Sum_probs=575.9

Q ss_pred             ccccccCCCC-CCCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcc---cCCCcccccCCCCCeeeCCCCCCCCCc
Q 044830            7 SHCDAAVTYP-KTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGT---LHPNSTLFLLHHLQKLNLACNDFNGTK   82 (801)
Q Consensus         7 ~~~~~~~~~~-~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~   82 (801)
                      +--|++...+ ++++|+.++|||+|+||.|+  +++|++|||+++++.|.   +++  ++.++++|+.++++.+.+..  
T Consensus        18 l~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L~~L~~l~~~~~~~~~--   91 (768)
T 3rgz_A           18 ISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSLTGLESLFLSNSHING--   91 (768)
T ss_dssp             HHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTCTTCCEEECTTSCEEE--
T ss_pred             HHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhccCcccccCCcCCCcCC--
Confidence            3345544433 78999988999999999998  58999999999999998   777  89999999999999998733  


Q ss_pred             ccccccCCCCCCEEeCCCCCCcccccc--CCcCCCCCCEEeCCCCcCCCccccCchhHhh-cCCCCCCEEeCCCccCCCC
Q 044830           83 ISSNFGQFTKLTHLNLSFSYFSGIVPS--QISRLSKLVALDLSSDIPRTKFEQHTFNNLA-KNLTELRYLLLDNVQMFSV  159 (801)
Q Consensus        83 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~  159 (801)
                      +|..|+.+++|++|+|++|.+++.+|.  .++++++|++|++++|.  +.   +..|..+ .++++|++|++++|.+.+.
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~  166 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT--LD---FPGKVSGGLKLNSLEVLDLSANSISGA  166 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE--EE---CCSSCCSCCCCTTCSEEECCSSCCEEE
T ss_pred             CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc--cC---CcCCHHHhccCCCCCEEECCCCccCCc
Confidence            567899999999999999999998888  89999999999999993  32   3333333 7899999999999999999


Q ss_pred             Cchh---hhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcc
Q 044830          160 VPSS---LLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPD  236 (801)
Q Consensus       160 ~~~~---l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  236 (801)
                      .+..   +.++  ++|++|++++|.+.+..+  +..+++|++|++++| .+.+.+|.+..+++|++|++++|.+++.+|.
T Consensus       167 ~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          167 NVVGWVLSDGC--GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             THHHHHHTTCC--TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred             CChhhhhhccC--CCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence            8887   7788  999999999999997665  389999999999999 5566667655899999999999999999999


Q ss_pred             cccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCC-CCCcEeeccCeeeeeeCCccCcCCCC
Q 044830          237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNL-SKLTRISLAHLNFTGQLPLSAFNLTQ  315 (801)
Q Consensus       237 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~  315 (801)
                      .++++++|++|++++|.+.+.+|..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..++++++
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            9999999999999999999888775  89999999999999999999988775 99999999999999999999999999


Q ss_pred             CCEEEcccccccccCCCC-C-CCCCCCEEEccCCcCCcccchhhcCCCCCC-CccEEEccCCCccccccccCCCC-cccc
Q 044830          316 LSLLELSRNQFVGQLPCH-A-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSE-NLVELDLSNNKLTGQIFQLDQWP-VERI  391 (801)
Q Consensus       316 L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~-~~~~  391 (801)
                      |++|++++|.+++.+|.. + .+++|++|++++|.+++.+|..+..   ++ +|+.|++++|.+++.++...... ..  
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~---l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~--  394 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN---LSASLLTLDLSSNNFSGPILPNLCQNPKN--  394 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH---HTTTCSEEECCSSEEEEECCTTTTCSTTC--
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh---hhcCCcEEEccCCCcCCCcChhhhhcccC--
Confidence            999999999999888865 4 8999999999999999999998887   55 89999999999998877665221 22  


Q ss_pred             cceeeeEEEecCCCCCCCCCC---ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEE
Q 044830          392 SSVELRHLDVQSNLLQRLPFI---LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLL  468 (801)
Q Consensus       392 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  468 (801)
                         .++.|++++|.+.+..+.   .+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus       395 ---~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          395 ---TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             ---CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ---CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence               789999999998866543   37889999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830          469 DLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       469 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~  548 (801)
                      ++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|+.|++++|++.
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCCCCC------------------------------------------------------------------CCCCCCC
Q 044830          549 GPIYNNV------------------------------------------------------------------PSIKRPF  562 (801)
Q Consensus       549 ~~~~~~~------------------------------------------------------------------~~~~~~l  562 (801)
                      |.+|..+                                                                  |..+..+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            8777432                                                                  1123446


Q ss_pred             CCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCee
Q 044830          563 PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRF  642 (801)
Q Consensus       563 ~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  642 (801)
                      ++|+.|||++|+++|.+|..+ .                                          .++.|+.|||++|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l-~------------------------------------------~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEI-G------------------------------------------SMPYLFILNLGHNDI  668 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGG-G------------------------------------------GCTTCCEEECCSSCC
T ss_pred             ccccEEECcCCcccccCCHHH-h------------------------------------------ccccCCEEeCcCCcc
Confidence            778888888888888888652 2                                          245689999999999


Q ss_pred             eeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCCCCC
Q 044830          643 EGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQ  722 (801)
Q Consensus       643 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~  722 (801)
                      +|.+|..|+++++|++||||+|+++|.+|..++++++|++||+++|+++|+||.++||.+|...+|.||++|||.|+. .
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~  747 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-R  747 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-C
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987 8


Q ss_pred             CCCC
Q 044830          723 CSNY  726 (801)
Q Consensus       723 c~~~  726 (801)
                      |...
T Consensus       748 C~~~  751 (768)
T 3rgz_A          748 CDPS  751 (768)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-68  Score=630.91  Aligned_cols=621  Identities=29%  Similarity=0.401  Sum_probs=525.1

Q ss_pred             CCCCeeeCCCCCCCCC--cccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhH--hhc
Q 044830           66 HHLQKLNLACNDFNGT--KISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNN--LAK  141 (801)
Q Consensus        66 ~~L~~L~Ls~n~~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~--~l~  141 (801)
                      .+++.|+|+++.+.+.  .++..+.++++|+.++++.+.+. .+|..++++++|++|||++|.  +.   +.+|.  .++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~l~  123 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNS--LS---GPVTTLTSLG  123 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSE--EE---EEGGGGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCc--CC---CcCCChHHHh
Confidence            4688899999998763  15677999999999999999876 366889999999999999993  33   45666  899


Q ss_pred             CCCCCCEEeCCCccCCCCCchhh-hccCCCCccEEEccCCcCccCCCcc---CCCCCCCCEEeccCCCCCccCCCCCCCC
Q 044830          142 NLTELRYLLLDNVQMFSVVPSSL-LNLSSASLISLSLGNCFLRGEFPID---IFHFPFLRQLTLSDNGLLTGNLPTSNWS  217 (801)
Q Consensus       142 ~l~~L~~L~L~~~~~~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~~~~~~~~~~~~~  217 (801)
                      ++++|++|++++|.+.+..|..+ .++  ++|++|++++|.+++..+..   +.++++|++|++++|. +.+..+. ..+
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~l  199 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKVSGGLKL--NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVDV-SRC  199 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSCCSCCCC--TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCBC-TTC
T ss_pred             CCCCCCEEECcCCccCCcCCHHHhccC--CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCCc-ccC
Confidence            99999999999999988888765 778  99999999999999888877   8899999999999994 4443333 588


Q ss_pred             CCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeec
Q 044830          218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISL  297 (801)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  297 (801)
                      ++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..  .+++|++|++
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L  276 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL  276 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred             CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence            9999999999999987887 999999999999999999999999999999999999999999888775  8999999999


Q ss_pred             cCeeeeeeCCccCcCC-CCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchh-hcCCCCCCCccEEEccCC
Q 044830          298 AHLNFTGQLPLSAFNL-TQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSW-LFNLSTSENLVELDLSNN  374 (801)
Q Consensus       298 ~~n~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n  374 (801)
                      ++|.+.+.+|..+... ++|++|++++|.+++.+|..+ .+++|++|++++|.+.|.+|.. +..   +++|++|++++|
T Consensus       277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~---l~~L~~L~Ls~n  353 (768)
T 3rgz_A          277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK---MRGLKVLDLSFN  353 (768)
T ss_dssp             CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT---CTTCCEEECCSS
T ss_pred             cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc---CCCCCEEeCcCC
Confidence            9999999999998875 999999999999999888887 8999999999999999999976 665   899999999999


Q ss_pred             CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc-----cccccEEEecCCCCCCCCccccccCCCCCEEECcCC
Q 044830          375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL-----SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN  449 (801)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  449 (801)
                      .+++.+|..+..-..     +++.|++++|.+.+..+..     +++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus       354 ~l~~~~p~~l~~l~~-----~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          354 EFSGELPESLTNLSA-----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             EEEECCCTTHHHHTT-----TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred             ccCccccHHHHhhhc-----CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence            999887765421111     7899999999988654332     578999999999999999999999999999999999


Q ss_pred             CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcch
Q 044830          450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPY  529 (801)
Q Consensus       450 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  529 (801)
                      .+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++.+.+|.
T Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCC-
Q 044830          530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY-  608 (801)
Q Consensus       530 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~-  608 (801)
                      +++.+++|++|++++|++.|.+|..+    ..+++|+.||+++|+++|.+|..++.....+...........++..... 
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAEL----GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK  584 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGG----GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHH----cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence            99999999999999999999888766    8899999999999999999998765432222111111011111100000 


Q ss_pred             --CceeeEE------------------------EEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCc
Q 044830          609 --DQYYSMI------------------------LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFS  662 (801)
Q Consensus       609 --~~~~~~~------------------------~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls  662 (801)
                        .......                        ..+++.....+..++.|+.||||+|+++|.+|.+|+++++|+.|+|+
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  664 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG  664 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence              0000000                        01111112223446789999999999999999999999999999999


Q ss_pred             CccccccCCccccCCCCCCeEeCcCCcceecCCCCC-CCCCcCcCcCCCC
Q 044830          663 HNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK-QFDSFQNDSFIGN  711 (801)
Q Consensus       663 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gn  711 (801)
                      +|+++|.+|..++++++|++|||++|+++|.||... .+..+......+|
T Consensus       665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            999999999999999999999999999999999752 2333444445555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3e-58  Score=541.10  Aligned_cols=588  Identities=21%  Similarity=0.236  Sum_probs=450.2

Q ss_pred             EEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCC
Q 044830           45 LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS  124 (801)
Q Consensus        45 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~  124 (801)
                      +|.++++++ .+|.  .+.  +++++|+|++|.+++. .+..|+.+++|++|+|++|.+++..|..|+++++|++|++++
T Consensus         9 ~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            9 ADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             EECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             eECCCCCcc-cccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            444455553 2333  332  6788888888887765 445577888888888888888777777778888888888887


Q ss_pred             CcCCCccccCchh-HhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccC
Q 044830          125 DIPRTKFEQHTFN-NLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSD  203 (801)
Q Consensus       125 n~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  203 (801)
                      |.  +.    .+| ..+.++++|++|++++|.+.+..+..|.++  ++|++|++++|.+++..+..+.++++|++|++++
T Consensus        83 n~--l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           83 NE--LS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             SC--CC----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC--TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             Cc--cC----ccChhhhccCCCCCEEECCCCccCccChhHcccc--CCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence            73  22    223 346778888888888888877777778877  7888888888888877777778888888888888


Q ss_pred             CCCCccCCCCC---CCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccc---cCCCCCCEEEcCCCC
Q 044830          204 NGLLTGNLPTS---NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASL---SNLKQLTVLNLEDNQ  277 (801)
Q Consensus       204 n~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~  277 (801)
                      |.+ .+..+..   ..+++|++|++++|.+++..|..+..+++|+.|++.++.+.......+   ...++|+.|++++|.
T Consensus       155 n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~  233 (680)
T 1ziw_A          155 NKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ  233 (680)
T ss_dssp             SCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred             Ccc-cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence            843 3222221   245778888888888887777778888888888888777654322211   134678888888888


Q ss_pred             CccccCccccCCCC--CcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcc--
Q 044830          278 FSGEFPDVFGNLSK--LTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGR--  352 (801)
Q Consensus       278 l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~--  352 (801)
                      +.+..|..|..++.  |++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ .+++|++|++++|...+.  
T Consensus       234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  313 (680)
T 1ziw_A          234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS  313 (680)
T ss_dssp             CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred             ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence            88777777777654  8888888888887777777788888888888888877766666 777888888877655432  


Q ss_pred             ---cchh-hcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCC--CCCc-----cccccEEE
Q 044830          353 ---IPSW-LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL--PFIL-----SSRIRFLS  421 (801)
Q Consensus       353 ---~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~-----~~~L~~L~  421 (801)
                         +|.. -..+..+++|++|++++|.+++..+..+ ..++     +|+.|++++|.+...  +...     .++|+.|+
T Consensus       314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~-----~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~  387 (680)
T 1ziw_A          314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLI-----NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN  387 (680)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCT-----TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred             cccccccChhhcccCCCCCEEECCCCccCCCChhHh-cccc-----CCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence               2220 0112337788888888888876555443 2333     678888888764322  2111     25899999


Q ss_pred             ecCCCCCCCCccccccCCCCCEEECcCCCCcccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC
Q 044830          422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP-QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE  500 (801)
Q Consensus       422 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  500 (801)
                      +++|++++..|..+..+++|++|++++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|++|++++|.+.
T Consensus       388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  467 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK  467 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred             CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence            99999998888999999999999999999987665 68899999999999999999888999999999999999999986


Q ss_pred             --CCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCC----CCCCCCCCcEEEccCCc
Q 044830          501 --GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS----IKRPFPELRIIDISRNG  574 (801)
Q Consensus       501 --~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~l~~L~~LdLs~N~  574 (801)
                        +..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+|.    .+..+++|++|+|++|+
T Consensus       468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence              568889999999999999999999998889999999999999999998764443332    35789999999999999


Q ss_pred             CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccc
Q 044830          575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLS  654 (801)
Q Consensus       575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  654 (801)
                      ++ .+|...|.+                                          ++.|+.|||++|++++..+..|.+++
T Consensus       548 l~-~i~~~~~~~------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          548 FD-EIPVEVFKD------------------------------------------LFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             CC-CCCTTTTTT------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CC-CCCHHHccc------------------------------------------ccCcceeECCCCCCCcCCHhHhCCCC
Confidence            98 566543332                                          45678999999999988888889999


Q ss_pred             cCceEeCcCccccccCCcccc-CCCCCCeEeCcCCcceecCCC
Q 044830          655 SLKLLNFSHNILRGEIPVELT-SLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       655 ~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      +|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999999998888887 789999999999999998774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.6e-56  Score=523.44  Aligned_cols=594  Identities=19%  Similarity=0.182  Sum_probs=476.9

Q ss_pred             CeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCE
Q 044830           69 QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRY  148 (801)
Q Consensus        69 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~  148 (801)
                      +.+++++++++.  +|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.  +.   +..|..+.++++|++
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--IS---KLEPELCQKLPMLKV   77 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CC---CCCTTHHHHCTTCCE
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cC---ccCHHHHhcccCcCE
Confidence            578999998865  565454  799999999999998888889999999999999983  33   445678899999999


Q ss_pred             EeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccC
Q 044830          149 LLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSI  227 (801)
Q Consensus       149 L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~  227 (801)
                      |++++|.+....+..|..+  ++|++|++++|.+.+..+..+.++++|++|++++|.+ .+..+..+ .+++|++|++++
T Consensus        78 L~L~~n~l~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFC--TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCS
T ss_pred             EECCCCccCccChhhhccC--CCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccC
Confidence            9999999998888889999  9999999999999988778899999999999999954 44444444 899999999999


Q ss_pred             ccCcccCccccc--CCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCcccc---CCCCCcEeeccCeee
Q 044830          228 TKFSGKIPDTIG--NLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFG---NLSKLTRISLAHLNF  302 (801)
Q Consensus       228 n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l  302 (801)
                      |.+++..+..+.  .+++|++|++++|.+.+..|..+..+.+|+.|++.++.+.......+.   ..++|++|++++|.+
T Consensus       155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l  234 (680)
T 1ziw_A          155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL  234 (680)
T ss_dssp             SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred             CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence            999977776654  568999999999999999999999999999999999987643322221   347899999999999


Q ss_pred             eeeCCccCcCCCC--CCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccc
Q 044830          303 TGQLPLSAFNLTQ--LSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ  379 (801)
Q Consensus       303 ~~~~p~~l~~l~~--L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~  379 (801)
                      .+..|..+..++.  |++|++++|.+++..+..+ .+++|++|++++|.+.+..|..+..   +++|+.|++++|...+.
T Consensus       235 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT---CTTCCEEECTTCBCCC-
T ss_pred             cccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC---CCCccEEeccchhhhcc
Confidence            9998988888754  9999999999998877767 8999999999999999888877776   88999999998866542


Q ss_pred             c-----cccCCCCcccccceeeeEEEecCCCCCCCCCC---ccccccEEEecCCCCCCCC--cccccc--CCCCCEEECc
Q 044830          380 I-----FQLDQWPVERISSVELRHLDVQSNLLQRLPFI---LSSRIRFLSVSDNKLTGEF--PSSICN--LSTIEYLNLS  447 (801)
Q Consensus       380 ~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~--~~~l~~--l~~L~~L~Ls  447 (801)
                      +     |......+.  ...+|+.|++++|.+.+.++.   .+++|++|++++|.+....  +..+..  .++|+.|+++
T Consensus       312 ~~~~~lp~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~  389 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT  389 (680)
T ss_dssp             -----CCEECTTTTT--TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred             cccccccccChhhcc--cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence            2     221111111  112788888888888877643   3678888998888754321  222333  2578889999


Q ss_pred             CCCCcccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC--
Q 044830          448 NNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN--  524 (801)
Q Consensus       448 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~--  524 (801)
                      +|++++..|..|..+++|++|++++|.+.+.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+.  
T Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence            998888888888888889999999988887665 67888888999999999888777888888888999999888876  


Q ss_pred             CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccc
Q 044830          525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN  604 (801)
Q Consensus       525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~  604 (801)
                      +..|..+..+++|++|++++|++++..+..+    ..+++|++|++++|++++..+..+ ..                  
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~-~~------------------  526 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQHNNLARLWKHAN-PG------------------  526 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCGGGGSTTS-TT------------------
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhh----ccccccCEEeCCCCCccccchhhc-cC------------------
Confidence            5677888888889999999988886555444    778888999999888875322110 00                  


Q ss_pred             cCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEe
Q 044830          605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLN  684 (801)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  684 (801)
                                      .....+..++.|+.|||++|+++...+..|+++++|+.|+|++|++++..+..|..+++|+.|+
T Consensus       527 ----------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  590 (680)
T 1ziw_A          527 ----------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN  590 (680)
T ss_dssp             ----------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ----------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence                            0000123367899999999999966666799999999999999999987788889999999999


Q ss_pred             CcCCcceecCCCCC--CCCCcCcCcCCCCCCCCCCC
Q 044830          685 LSFNQLVGPIPQGK--QFDSFQNDSFIGNLGLCGFA  718 (801)
Q Consensus       685 ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~  718 (801)
                      +++|++++..|...  .+..+....+.|||..|+++
T Consensus       591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999998776432  35566677788999999765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.1e-53  Score=490.72  Aligned_cols=518  Identities=21%  Similarity=0.223  Sum_probs=379.1

Q ss_pred             CCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCC
Q 044830           67 HLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL  146 (801)
Q Consensus        67 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L  146 (801)
                      ++++|+|++|.+++. .|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|                     
T Consensus        34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---------------------   91 (606)
T 3t6q_A           34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN---------------------   91 (606)
T ss_dssp             TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred             cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC---------------------
Confidence            678888888887764 4566788888888888888887777777777777777777777                     


Q ss_pred             CEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEcc
Q 044830          147 RYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLS  226 (801)
Q Consensus       147 ~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls  226 (801)
                              .+.+..|..|..+  ++|++|++++|.+++..+..+.++++|++|++++|.+.....+.+..+++|++|+++
T Consensus        92 --------~l~~~~~~~~~~l--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  161 (606)
T 3t6q_A           92 --------PLIFMAETALSGP--KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ  161 (606)
T ss_dssp             --------CCSEECTTTTSSC--TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred             --------cccccChhhhccc--ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence                    2333344455555  566666666666665545556777777777777775544455665567788888888


Q ss_pred             CccCcccCcccccCCCCCC--EEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeee
Q 044830          227 ITKFSGKIPDTIGNLRDLK--FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG  304 (801)
Q Consensus       227 ~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  304 (801)
                      +|.+++..+..++.+++|+  .|++++|.+.+..|..+. ..+|++|++++|.   ..+..+..+.+++...+....+.+
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~  237 (606)
T 3t6q_A          162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED  237 (606)
T ss_dssp             SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT
T ss_pred             cCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhcc
Confidence            8888777777788888888  888888888876666554 3678888888876   334444455444433332221110


Q ss_pred             -----eCCccCcCCC--CCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCc
Q 044830          305 -----QLPLSAFNLT--QLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL  376 (801)
Q Consensus       305 -----~~p~~l~~l~--~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l  376 (801)
                           ..+..+..+.  +|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+..   +++|++|++++|.+
T Consensus       238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~---l~~L~~L~l~~n~l  313 (606)
T 3t6q_A          238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG---LSTLKKLVLSANKF  313 (606)
T ss_dssp             SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS---CTTCCEEECTTCCC
T ss_pred             ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc---cccCCEEECccCCc
Confidence                 1111122221  56667777776665555444 5666777777776666 55655544   56666777766666


Q ss_pred             cccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcc-ccccCCCCCEEECcCCCCcccC
Q 044830          377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS-SICNLSTIEYLNLSNNSLSGMI  455 (801)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~  455 (801)
                      ++..+..+                           ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..
T Consensus       314 ~~~~~~~~---------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          314 ENLCQISA---------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             SBGGGGCG---------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CcCchhhh---------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            54333222                           1246788888888888766554 4788899999999999988765


Q ss_pred             --CccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCcc-ccCCCCCcEEeCCCCcCCCCcchhcc
Q 044830          456 --PQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTA  532 (801)
Q Consensus       456 --~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~  532 (801)
                        +..+..+++|++|++++|.+.+..|..|..+++|++|++++|++.+..+.. +.++++|++|++++|++.+..|..+.
T Consensus       367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence              677888999999999999998888888999999999999999998776544 88899999999999999988888999


Q ss_pred             CCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCcee
Q 044830          533 TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY  612 (801)
Q Consensus       533 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  612 (801)
                      .+++|++|++++|++.+.... .+..+..+++|++|++++|++++..|.. +.                           
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~---------------------------  497 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHA-FT---------------------------  497 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSCCCEECTTT-TT---------------------------
T ss_pred             CCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCccCccChhh-hc---------------------------
Confidence            999999999999998763221 1123478899999999999998776643 21                           


Q ss_pred             eEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830          613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       613 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                                     .++.|+.|||++|++++.+|+.+.++++| .|+|++|++++.+|..+..+++|+.|++++|++.+
T Consensus       498 ---------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          498 ---------------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             ---------------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ---------------cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence                           24578999999999999999999999999 99999999999999999999999999999999998


Q ss_pred             cCCC
Q 044830          693 PIPQ  696 (801)
Q Consensus       693 ~iP~  696 (801)
                      ..+.
T Consensus       562 ~c~~  565 (606)
T 3t6q_A          562 TCSN  565 (606)
T ss_dssp             SGGG
T ss_pred             cCCc
Confidence            7763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-53  Score=507.20  Aligned_cols=544  Identities=21%  Similarity=0.261  Sum_probs=254.0

Q ss_pred             CCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCch-hHhhcCCCCCCEEeCCCccCCCCCchhhhccCC
Q 044830           91 TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF-NNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS  169 (801)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~  169 (801)
                      ++|++|||++|.+++..|..|.++++|++|+|++|.  ..   ..+ |..+.++++|++|++++|.+.+..|..|..+  
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l--   96 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--TP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL--   96 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--CC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC--
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--Cc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC--
Confidence            344444444444444444444444444444444441  00   111 2333444444444444445555555556655  


Q ss_pred             CCccEEEccCCcCccCCCcc--CCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCC--CCC
Q 044830          170 ASLISLSLGNCFLRGEFPID--IFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNL--RDL  244 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l--~~L  244 (801)
                      ++|++|+|++|.+.+.++..  +.++++|++|++++|.+.....+..+ .+++|++|++++|.+++..+..+..+  ++|
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L  176 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL  176 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence            66666666666666544443  66666666666666643332222222 56666666666666666666666655  666


Q ss_pred             CEEEcccccCcccCcccccCCCC------CCEEEcCCCCCccccCccccCC---CCCcEeeccCeeeeeeCCccCcCCCC
Q 044830          245 KFLDLYVCYFDGQVPASLSNLKQ------LTVLNLEDNQFSGEFPDVFGNL---SKLTRISLAHLNFTGQLPLSAFNLTQ  315 (801)
Q Consensus       245 ~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~  315 (801)
                      +.|+++.|.+.+..|..+..+.+      |++|++++|.+.+..+..+...   .+++.+.++.+......         
T Consensus       177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~---------  247 (844)
T 3j0a_A          177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF---------  247 (844)
T ss_dssp             CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS---------
T ss_pred             ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc---------
Confidence            77777777666666655555444      6667777666665555544432   34555555433221100         


Q ss_pred             CCEEEcccccccccCCCCC---CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCccccc
Q 044830          316 LSLLELSRNQFVGQLPCHA---SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERIS  392 (801)
Q Consensus       316 L~~L~l~~n~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  392 (801)
                            ..+.+.+.....+   ..++|+.|++++|.+.+..+..+..   +++|+.|++++|.+++..+..+ ..+.   
T Consensus       248 ------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~i~~~~~~~~-~~l~---  314 (844)
T 3j0a_A          248 ------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET---LKDLKVLNLAYNKINKIADEAF-YGLD---  314 (844)
T ss_dssp             ------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS---CCCCCEEEEESCCCCEECTTTT-TTCS---
T ss_pred             ------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc---CCCCCEEECCCCcCCCCChHHh-cCCC---
Confidence                  0111111111111   1244555555555555444444433   4555555555555544333222 1111   


Q ss_pred             ceeeeEEEecCCCCCCCCC---CccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEe
Q 044830          393 SVELRHLDVQSNLLQRLPF---ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLD  469 (801)
Q Consensus       393 ~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  469 (801)
                        +|+.|++++|.+.+..+   ..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++.     ..+++|+.|+
T Consensus       315 --~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~  387 (844)
T 3j0a_A          315 --NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIF  387 (844)
T ss_dssp             --SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEE
T ss_pred             --CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhc
Confidence              12222222222221111   1133444455555544444444444555555555555554421     1144455555


Q ss_pred             CCCCcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcch-hccCCCCCCEEEccCCcC
Q 044830          470 LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPY-WTATLPRLQVLVLRSNSF  547 (801)
Q Consensus       470 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l  547 (801)
                      +++|+++ .+|..   ..+++.|++++|.+++... ..+.++++|+.|++++|++++..+. .+..+++|+.|++++|.+
T Consensus       388 l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l  463 (844)
T 3j0a_A          388 LSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML  463 (844)
T ss_dssp             EESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred             cCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence            5555554 22322   2345555555555543211 1233455555555555555443222 233345555555555555


Q ss_pred             cccCCCC-CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhh
Q 044830          548 HGPIYNN-VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEME  626 (801)
Q Consensus       548 ~~~~~~~-~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (801)
                      .+..+.. .+..+..+++|+.|+|++|++++..|.. |.                                         
T Consensus       464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~-----------------------------------------  501 (844)
T 3j0a_A          464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FS-----------------------------------------  501 (844)
T ss_dssp             SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS-SS-----------------------------------------
T ss_pred             ccccccccchhhhcCcccccEEECCCCcccccChhH-cc-----------------------------------------
Confidence            4322211 1122344555555555555555433321 11                                         


Q ss_pred             hhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcC
Q 044830          627 RVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQND  706 (801)
Q Consensus       627 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~  706 (801)
                       .++.|+.|||++|++++.+|..+.  ++|+.|+|++|++++.+|..|.   +|+.|++++|++.+.++.    ..|...
T Consensus       502 -~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~  571 (844)
T 3j0a_A          502 -HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINW  571 (844)
T ss_dssp             -SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHH
T ss_pred             -chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHH
Confidence             123455556666665555444444  5556666666666655554432   455556666655555442    122111


Q ss_pred             cCCCCCCCCCCCCCCCCCCC
Q 044830          707 SFIGNLGLCGFALTQQCSNY  726 (801)
Q Consensus       707 ~~~gn~~lcg~~l~~~c~~~  726 (801)
                      ...+|..+||.+....|..+
T Consensus       572 ~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          572 LNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             HHHTTTTTCCCGGGCCCSSC
T ss_pred             HHhcCcccccccccCccCCc
Confidence            12334455565555677654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.9e-52  Score=479.12  Aligned_cols=528  Identities=20%  Similarity=0.200  Sum_probs=328.7

Q ss_pred             EEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCC
Q 044830           44 GLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS  123 (801)
Q Consensus        44 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls  123 (801)
                      .++.++.+++ .+|.  .+.  +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus        15 ~~~c~~~~l~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           15 TYQCMDQKLS-KVPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             EEECTTSCCS-SCCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEccCCCcc-cCCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            3555666664 3333  232  6788888888887654 44467788888888888888877777777777777777777


Q ss_pred             CCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc-CCCccCCCCCCCCEEecc
Q 044830          124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG-EFPIDIFHFPFLRQLTLS  202 (801)
Q Consensus       124 ~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls  202 (801)
                      +|.  +.   ...|..+.++++|++|++++|.+.+..+..++++  ++|++|++++|.+.+ .+|..+++++        
T Consensus        89 ~n~--l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~--------  153 (606)
T 3vq2_A           89 GNP--IQ---SFSPGSFSGLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLT--------  153 (606)
T ss_dssp             TCC--CC---CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC--TTCCEEECCSSCCCCCCCCGGGGTCT--------
T ss_pred             CCc--cc---ccChhhcCCcccCCEEEccCCccccccccccCCC--CCCCEEeCCCCcccceechHhHhhcC--------
Confidence            772  21   2223344445555555555544444444444444  444444444444433 2344444444        


Q ss_pred             CCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCC----EEEcccccCcccCcccccCCCCCCEEEcCCCCC
Q 044830          203 DNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLK----FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQF  278 (801)
Q Consensus       203 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  278 (801)
                                      +|++|++++|.+++..+..++.+++|+    +|++++|.+++..+..+... +|++|++++|.+
T Consensus       154 ----------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~  216 (606)
T 3vq2_A          154 ----------------NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN  216 (606)
T ss_dssp             ----------------TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred             ----------------CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCcc
Confidence                            444444444444443344343333322    45555555443333333222 455555555544


Q ss_pred             c-cccCccccCCCCCcEeeccCeeeeee---------CCccCcCCCCCCEEEc-ccccccccCCCCCCCCCCCEEEccCC
Q 044830          279 S-GEFPDVFGNLSKLTRISLAHLNFTGQ---------LPLSAFNLTQLSLLEL-SRNQFVGQLPCHASCLPLSHLKLGGN  347 (801)
Q Consensus       279 ~-~~~p~~~~~l~~L~~L~L~~n~l~~~---------~p~~l~~l~~L~~L~l-~~n~~~~~~~~~~~~~~L~~L~L~~n  347 (801)
                      . +..|..+.+++.|+.+++..+.+.+.         .+..+..+ .++.+++ ..+.+.+.++....+++|+.|++++|
T Consensus       217 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  295 (606)
T 3vq2_A          217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV  295 (606)
T ss_dssp             CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred             chhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccccccccCCCCCEEEecCc
Confidence            3 23344444455554444433222110         00000011 1222333 22333333332113333333333333


Q ss_pred             cCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCC
Q 044830          348 FLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL  427 (801)
Q Consensus       348 ~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l  427 (801)
                      .+. .+| .+..   +++                              ++.|++++|.+..++...+++|+.|++++|..
T Consensus       296 ~~~-~l~-~l~~---~~~------------------------------L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~  340 (606)
T 3vq2_A          296 SIK-YLE-DVPK---HFK------------------------------WQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG  340 (606)
T ss_dssp             CCC-CCC-CCCT---TCC------------------------------CSEEEEESCCCSSCCCCCCSSCCEEEEESCSS
T ss_pred             cch-hhh-hccc---ccc------------------------------CCEEEcccccCcccccCCCCccceeeccCCcC
Confidence            332 222 1111   333                              44444444444333322356777777777755


Q ss_pred             CCCCccccccCCCCCEEECcCCCCccc--CCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC-
Q 044830          428 TGEFPSSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-  504 (801)
Q Consensus       428 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-  504 (801)
                      .+..  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| 
T Consensus       341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~  417 (606)
T 3vq2_A          341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF  417 (606)
T ss_dssp             CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred             ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh
Confidence            4333  466788888888888888765  37778888888999998888874 56778888889999999998887777 


Q ss_pred             ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCccc-CCCCCCCCCCCCCCCcEEEccCCcCCccCcHHH
Q 044830          505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP-IYNNVPSIKRPFPELRIIDISRNGFTGLLPARY  583 (801)
Q Consensus       505 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~  583 (801)
                      ..+.++++|++|++++|++.+..|..+..+++|++|++++|++.+. ++..+    ..+++|+.|++++|++++..|.. 
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~-  492 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF----ANTTNLTFLDLSKCQLEQISWGV-  492 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTSCCCEECTTT-
T ss_pred             hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh----ccCCCCCEEECCCCcCCccChhh-
Confidence            6788889999999999999888888888999999999999988873 44444    78899999999999998776643 


Q ss_pred             HhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcC
Q 044830          584 FQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH  663 (801)
Q Consensus       584 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~  663 (801)
                      +.                                          .++.|+.|+|++|++++.+|..++++++|+.|+|++
T Consensus       493 ~~------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  530 (606)
T 3vq2_A          493 FD------------------------------------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF  530 (606)
T ss_dssp             TT------------------------------------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred             hc------------------------------------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence            11                                          245789999999999999999999999999999999


Q ss_pred             ccccccCCccccCCC-CCCeEeCcCCcceecCCC
Q 044830          664 NILRGEIPVELTSLT-ALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       664 N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP~  696 (801)
                      |+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       531 N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          531 NRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             SCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999 6777799997 699999999999988774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.1e-51  Score=474.92  Aligned_cols=526  Identities=20%  Similarity=0.180  Sum_probs=390.1

Q ss_pred             cceeEeCCC---------CCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCC
Q 044830           30 WDGIICDEM---------TGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSF  100 (801)
Q Consensus        30 w~gv~c~~~---------~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~  100 (801)
                      +..|.|...         ...+++|||++|.+++..+.  ++..+++|++|+|++|.+... .|..|+.+++|++|+|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCC
Confidence            456888642         34789999999999876666  899999999999999999775 677899999999999999


Q ss_pred             CCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCC
Q 044830          101 SYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNC  180 (801)
Q Consensus       101 n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n  180 (801)
                      |.+++..|..|+++++|++|++++|.  +.   ..-+..+.++++|++|++++|.+.+.....+..+  ++|++|++++|
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~--i~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n  163 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTG--IS---SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNN  163 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSC--CS---CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSS
T ss_pred             CcccccChhhhcccccccEeeccccC--cc---cCCcchhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccC
Confidence            99999999999999999999999993  32   2224457899999999999999998665555557  99999999999


Q ss_pred             cCccCCCccCCCCCCCC--EEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcc--
Q 044830          181 FLRGEFPIDIFHFPFLR--QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG--  256 (801)
Q Consensus       181 ~l~~~~~~~l~~l~~L~--~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--  256 (801)
                      .+++..+..+..+++|+  .|++++| ...+..+..+....|++|++++|..   ++..+..+.+++...+....+.+  
T Consensus       164 ~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~  239 (606)
T 3t6q_A          164 AIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMD  239 (606)
T ss_dssp             CCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred             cccccChhhhhhhcccceeEEecCCC-ccCccChhHhhhccccccccCCchh---HHHHhhhccccchhheechhhcccc
Confidence            99988888899999999  8999999 4455556666677899999998862   33334444443333332221111  


Q ss_pred             ---cCcccccCCC--CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCC
Q 044830          257 ---QVPASLSNLK--QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLP  331 (801)
Q Consensus       257 ---~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  331 (801)
                         ..+..+..+.  +|+.|++++|.+.+..+..|+.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+
T Consensus       240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred             ccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch
Confidence               1112222222  4566666666666555555666666666666666665 455556666666666666666655444


Q ss_pred             CCC-CCCCCCEEEccCCcCCcccchh-hcCCCCCCCccEEEccCCCccccc--cccCCCCcccccceeeeEEEecCCCCC
Q 044830          332 CHA-SCLPLSHLKLGGNFLDGRIPSW-LFNLSTSENLVELDLSNNKLTGQI--FQLDQWPVERISSVELRHLDVQSNLLQ  407 (801)
Q Consensus       332 ~~~-~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~  407 (801)
                      ..+ .+++|++|++++|.+.+.+|.. +..   +++|++|++++|.+++..  +..+ ..++     +|+.|++++|.+.
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~-~~l~-----~L~~L~l~~n~l~  389 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLEN---LENLRELDLSHDDIETSDCCNLQL-RNLS-----HLQSLNLSYNEPL  389 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTT---CTTCCEEECCSSCCCEEEESTTTT-TTCT-----TCCEEECCSCSCE
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhc---cCcCCEEECCCCccccccCcchhc-ccCC-----CCCEEECCCCcCC
Confidence            444 5566666666666665555443 222   566666666666665432  1111 1222     5666666666655


Q ss_pred             CCCCC---ccccccEEEecCCCCCCCCcc-ccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccccc---CC
Q 044830          408 RLPFI---LSSRIRFLSVSDNKLTGEFPS-SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS---IP  480 (801)
Q Consensus       408 ~~~~~---~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~  480 (801)
                      +.++.   .+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.   .+
T Consensus       390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  469 (606)
T 3t6q_A          390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT  469 (606)
T ss_dssp             EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred             cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence            54332   367899999999999876654 488899999999999999988888899999999999999998863   33


Q ss_pred             ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 044830          481 QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKR  560 (801)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  560 (801)
                      ..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..++.| .|++++|++++..+..+    .
T Consensus       470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~----~  544 (606)
T 3t6q_A          470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL----P  544 (606)
T ss_dssp             CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH----H
T ss_pred             hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc----c
Confidence            568889999999999999998888999999999999999999999999999999999 99999999987665444    6


Q ss_pred             CCCCCcEEEccCCcCCccCcHHHH
Q 044830          561 PFPELRIIDISRNGFTGLLPARYF  584 (801)
Q Consensus       561 ~l~~L~~LdLs~N~l~~~~p~~~~  584 (801)
                      .+++|+.|++++|++.+..+...+
T Consensus       545 ~l~~L~~L~l~~N~~~c~c~~~~~  568 (606)
T 3t6q_A          545 ILSQQRTINLRQNPLDCTCSNIYF  568 (606)
T ss_dssp             HHHTSSEEECTTCCEECSGGGHHH
T ss_pred             cCCCCCEEeCCCCCccccCCcHHH
Confidence            788999999999999987775444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.9e-50  Score=463.67  Aligned_cols=528  Identities=20%  Similarity=0.180  Sum_probs=435.0

Q ss_pred             CCccc----ceeEeCC---------CCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCC
Q 044830           26 DCCSW----DGIICDE---------MTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTK   92 (801)
Q Consensus        26 ~~c~w----~gv~c~~---------~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~   92 (801)
                      +.|.|    ..|.|..         ...++++|+|+++.+.+..+.  .+..+++|++|+|++|.+++. .|..|+.+++
T Consensus         5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~   81 (606)
T 3vq2_A            5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHH   81 (606)
T ss_dssp             -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTT
T ss_pred             CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhh
Confidence            34555    3577753         235799999999999877666  899999999999999999875 5677999999


Q ss_pred             CCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCC-CCchhhhccCCCC
Q 044830           93 LTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFS-VVPSSLLNLSSAS  171 (801)
Q Consensus        93 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~~~  171 (801)
                      |++|+|++|.+++..|..|+++++|++|++++|.  +.   ...+..++++++|++|++++|.+.+ .+|..+.++  ++
T Consensus        82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~  154 (606)
T 3vq2_A           82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK--LA---SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TN  154 (606)
T ss_dssp             CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC--CC---CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TT
T ss_pred             cCEeECCCCcccccChhhcCCcccCCEEEccCCc--cc---cccccccCCCCCCCEEeCCCCcccceechHhHhhc--CC
Confidence            9999999999999889999999999999999994  32   2222458899999999999999987 569999999  99


Q ss_pred             ccEEEccCCcCccCCCccCCCCCCCC----EEeccCCCCCccCCCCCCCCCCCCEEEccCccCc-ccCcccccCCCCCCE
Q 044830          172 LISLSLGNCFLRGEFPIDIFHFPFLR----QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFS-GKIPDTIGNLRDLKF  246 (801)
Q Consensus       172 L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~  246 (801)
                      |++|++++|.+++..+..+..+++|+    +|++++|.+. ...+..+...+|++|++++|.++ +..|..+.+++.|+.
T Consensus       155 L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  233 (606)
T 3vq2_A          155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV  233 (606)
T ss_dssp             CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred             CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence            99999999999998888887776654    8999999543 33333344558999999999987 456788999999999


Q ss_pred             EEcccccCccc------CcccccCCC--CCCEEEc-CCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCC
Q 044830          247 LDLYVCYFDGQ------VPASLSNLK--QLTVLNL-EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS  317 (801)
Q Consensus       247 L~L~~n~l~~~------~p~~l~~l~--~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  317 (801)
                      +++..+.+.+.      .+..+..+.  .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+
T Consensus       234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~  310 (606)
T 3vq2_A          234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQ  310 (606)
T ss_dssp             EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCS
T ss_pred             ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCC
Confidence            99876654321      112222222  4566777 67778877777 888999999999999986 456 788899999


Q ss_pred             EEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccc--cccCCCCccccccee
Q 044830          318 LLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI--FQLDQWPVERISSVE  395 (801)
Q Consensus       318 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~~~~  395 (801)
                      +|++++|.+ +.+|.. .+++|++|++++|...+.+  .+.   .+++|++|++++|.+++..  +... ..++     .
T Consensus       311 ~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~---~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~-----~  377 (606)
T 3vq2_A          311 SLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKV---ALPSLSYLDLSRNALSFSGCCSYSD-LGTN-----S  377 (606)
T ss_dssp             EEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCC---CCTTCCEEECCSSCEEEEEECCHHH-HCCS-----C
T ss_pred             EEEcccccC-cccccC-CCCccceeeccCCcCccch--hhc---cCCCCCEEECcCCccCCCcchhhhh-ccCC-----c
Confidence            999999999 577755 8899999999999665444  223   4789999999999987652  2222 2222     7


Q ss_pred             eeEEEecCCCCCCCCC--CccccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC
Q 044830          396 LRHLDVQSNLLQRLPF--ILSSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK  472 (801)
Q Consensus       396 L~~L~l~~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  472 (801)
                      |+.|++++|.+.+.+.  ..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus       378 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred             ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence            8999999999887763  337899999999999998877 6889999999999999999999999999999999999999


Q ss_pred             Ccccc-cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830          473 NQFRG-SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI  551 (801)
Q Consensus       473 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  551 (801)
                      |.+.+ .+|..|..+++|++|++++|++++..|..+.++++|++|++++|++.+..|..+..+++|++|++++|+++. +
T Consensus       458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~  536 (606)
T 3vq2_A          458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-S  536 (606)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-E
T ss_pred             CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-c
Confidence            99998 478899999999999999999999999999999999999999999999999999999999999999999984 3


Q ss_pred             CCCCCCCCCCCC-CCcEEEccCCcCCccCcHHHHh
Q 044830          552 YNNVPSIKRPFP-ELRIIDISRNGFTGLLPARYFQ  585 (801)
Q Consensus       552 ~~~~~~~~~~l~-~L~~LdLs~N~l~~~~p~~~~~  585 (801)
                      |..+    ..++ +|+.|++++|++.+..+...+.
T Consensus       537 p~~~----~~l~~~L~~l~l~~N~~~c~c~~~~~~  567 (606)
T 3vq2_A          537 KGIL----QHFPKSLAFFNLTNNSVACICEHQKFL  567 (606)
T ss_dssp             ESCG----GGSCTTCCEEECCSCCCCCSSTTHHHH
T ss_pred             CHhH----hhhcccCcEEEccCCCcccCCccHHHH
Confidence            3333    6776 6999999999999877765543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-50  Score=468.41  Aligned_cols=480  Identities=19%  Similarity=0.267  Sum_probs=329.7

Q ss_pred             CCCCCCCCCCCCCCCccc---ceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCC--------
Q 044830           13 VTYPKTKSWNKDGDCCSW---DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGT--------   81 (801)
Q Consensus        13 ~~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~--------   81 (801)
                      ..++..++|+.+.+||.|   +||.|+.. +||++|+|+++++.|.+++  +++++++|++|+|++|.+...        
T Consensus        52 ~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~  128 (636)
T 4eco_A           52 FGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKG  128 (636)
T ss_dssp             ------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTS
T ss_pred             cCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccc
Confidence            345567799988999999   99999865 8999999999999999998  999999999999999975211        


Q ss_pred             ---cccccccCCCCCCEEeCCCCCCccccccCCcC-CCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCC--Ccc
Q 044830           82 ---KISSNFGQFTKLTHLNLSFSYFSGIVPSQISR-LSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLD--NVQ  155 (801)
Q Consensus        82 ---~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~-l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~--~~~  155 (801)
                         .+|...  +..|+ ++++++.+.+.+|..+.. +..+..+++....  ..         ......++.+.+.  .|.
T Consensus       129 ~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~--~~---------~~~~~~l~~l~l~~~~n~  194 (636)
T 4eco_A          129 ISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS--IK---------KSSRITLKDTQIGQLSNN  194 (636)
T ss_dssp             BCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC--CC---------CCCCCCCCTTTTTCCSCE
T ss_pred             cccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc--cc---------cccccchhhhhhccccCC
Confidence               133322  45666 788888777777766653 2222233332210  00         0111223333333  466


Q ss_pred             CCCCCchhhhccCCCCccEEEccCCcCccC-----------------CCccCC--CCCCCCEEeccCCCCCccCCCCCC-
Q 044830          156 MFSVVPSSLLNLSSASLISLSLGNCFLRGE-----------------FPIDIF--HFPFLRQLTLSDNGLLTGNLPTSN-  215 (801)
Q Consensus       156 ~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~~-  215 (801)
                      +++ +|..++++  ++|++|+|++|.+++.                 +|..++  ++++|++|++++| .+.+.+|..+ 
T Consensus       195 l~~-ip~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~  270 (636)
T 4eco_A          195 ITF-VSKAVMRL--TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLK  270 (636)
T ss_dssp             EEE-ECGGGGGC--TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTT
T ss_pred             Ccc-CCHHHhcc--cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHh
Confidence            777 78888888  8888888888888875                 788888  8888888888888 4556667655 


Q ss_pred             CCCCCCEEEccCcc-Ccc-cCcccccCC------CCCCEEEcccccCcccCcc--cccCCCCCCEEEcCCCCCccccCcc
Q 044830          216 WSSPLRILDLSITK-FSG-KIPDTIGNL------RDLKFLDLYVCYFDGQVPA--SLSNLKQLTVLNLEDNQFSGEFPDV  285 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~  285 (801)
                      .+++|++|++++|. +++ .+|..++++      ++|++|++++|.++ .+|.  .++++++|++|++++|.+.+.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            78888888888887 777 778777765      78888888888887 6777  78888888888888888887777 7


Q ss_pred             ccCCCCCcEeeccCeeeeeeCCccCcCCCC-CCEEEcccccccccCCCCC-C--CCCCCEEEccCCcCCcccchhhcCCC
Q 044830          286 FGNLSKLTRISLAHLNFTGQLPLSAFNLTQ-LSLLELSRNQFVGQLPCHA-S--CLPLSHLKLGGNFLDGRIPSWLFNLS  361 (801)
Q Consensus       286 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~n~~~~~~~~~~-~--~~~L~~L~L~~n~l~~~~~~~~~~l~  361 (801)
                      ++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+ .  +++|++|++++|.+.+.+|..+....
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            788888888888888887 67777778877 888888888877 555544 2  33677777777777766666554100


Q ss_pred             ----CCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccc-cc
Q 044830          362 ----TSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS-IC  436 (801)
Q Consensus       362 ----~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~  436 (801)
                          .+++|++|++++|.++ .+|....                          ..+++|++|++++|+++ .+|.. +.
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~  478 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQIS-KFPKELF--------------------------STGSPLSSINLMGNMLT-EIPKNSLK  478 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCC-SCCTHHH--------------------------HTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred             cccccCCCCCEEECcCCccC-cCCHHHH--------------------------ccCCCCCEEECCCCCCC-CcCHHHhc
Confidence                1445666666666555 2222110                          11345666666666666 33332 22


Q ss_pred             c-------CCCCCEEECcCCCCcccCCcccc--CCCCCCEEeCCCCcccccCCccccCCCCccEEEC------CCCcCCC
Q 044830          437 N-------LSTIEYLNLSNNSLSGMIPQCLA--NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL------NDNELEG  501 (801)
Q Consensus       437 ~-------l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~  501 (801)
                      .       +++|++|++++|.++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|++      ++|++.+
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~  556 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR  556 (636)
T ss_dssp             ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred             cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence            2       226777777777776 4555554  66777777777777775 6666667777777777      4566777


Q ss_pred             CCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCccc
Q 044830          502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP  550 (801)
Q Consensus       502 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  550 (801)
                      .+|..+.++++|++|++++|++ +.+|..+.  ++|+.|++++|++...
T Consensus       557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             cChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            7777787888888888888888 55565544  6788888888876643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=468.34  Aligned_cols=521  Identities=21%  Similarity=0.180  Sum_probs=434.6

Q ss_pred             cccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCcccc
Q 044830           28 CSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIV  107 (801)
Q Consensus        28 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  107 (801)
                      |.|++|.+  ...++++|||++|.+.+..+.  ++..+++|++|+|++|.+...-.|..|+++++|++|+|++|.+++..
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            56777776  457899999999999877666  89999999999999997654423678999999999999999999999


Q ss_pred             ccCCcCCCCCCEEeCCCCcCCCccccCchhH--hhcCCCCCCEEeCCCccCCCCCc-hhhhccCCCCccEEEccCCcCcc
Q 044830          108 PSQISRLSKLVALDLSSDIPRTKFEQHTFNN--LAKNLTELRYLLLDNVQMFSVVP-SSLLNLSSASLISLSLGNCFLRG  184 (801)
Q Consensus       108 p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~~~L~~L~L~~n~l~~  184 (801)
                      |..|+++++|++|+|++|.  +.   +..+.  .+.++++|++|++++|.+.+..+ ..|.++  ++|++|+|++|.+++
T Consensus        90 p~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCG--LS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQIFL  162 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCC--CS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSCCCC
T ss_pred             HhHccCCcccCEeeCcCCC--CC---cccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCcCCe
Confidence            9999999999999999993  32   22232  37899999999999999988765 679999  999999999999999


Q ss_pred             CCCccCCCC--CCCCEEeccCCCCCccCCCCCC-CCC------CCCEEEccCccCcccCcccccCC---CCCCEEEcccc
Q 044830          185 EFPIDIFHF--PFLRQLTLSDNGLLTGNLPTSN-WSS------PLRILDLSITKFSGKIPDTIGNL---RDLKFLDLYVC  252 (801)
Q Consensus       185 ~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~-~~~------~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n  252 (801)
                      ..+..+..+  ++|+.|++++|. ..+..+... .+.      .|++|++++|.+++..+..+...   ..++.|.+..+
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eCHHHcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            888888877  899999999994 444444332 333      49999999999988888776643   67888888733


Q ss_pred             ---------cCcccCcccccCC--CCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEc
Q 044830          253 ---------YFDGQVPASLSNL--KQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL  321 (801)
Q Consensus       253 ---------~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  321 (801)
                               .+.+..+..|..+  ++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                     3333334445554  78999999999999888999999999999999999999988989999999999999


Q ss_pred             ccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEE
Q 044830          322 SRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLD  400 (801)
Q Consensus       322 ~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~  400 (801)
                      ++|.+.+..+..+ .+++|++|++++|.+.+..+..+..   +++|+.|++++|.+++. +.     .+     +++.++
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~i-~~-----~~-----~L~~L~  387 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF---LEKLQTLDLRDNALTTI-HF-----IP-----SIPDIF  387 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS---CCCCCEEEEETCCSCCC-SS-----CC-----SCSEEE
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC---CCCCCEEECCCCCCCcc-cC-----CC-----Ccchhc
Confidence            9999988777777 8999999999999998666666655   89999999999998742 21     12     789999


Q ss_pred             ecCCCCCCCCCCccccccEEEecCCCCCCCC-ccccccCCCCCEEECcCCCCcccCCc-cccCCCCCCEEeCCCCccc--
Q 044830          401 VQSNLLQRLPFILSSRIRFLSVSDNKLTGEF-PSSICNLSTIEYLNLSNNSLSGMIPQ-CLANFDSLSLLDLRKNQFR--  476 (801)
Q Consensus       401 l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~--  476 (801)
                      +++|.+..++.. ..+++.|++++|.+++.. +..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++  
T Consensus       388 l~~N~l~~l~~~-~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  466 (844)
T 3j0a_A          388 LSGNKLVTLPKI-NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA  466 (844)
T ss_dssp             EESCCCCCCCCC-CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred             cCCCCccccccc-ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence            999999977543 678999999999998642 33456899999999999999865443 4566889999999999997  


Q ss_pred             ---ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCC
Q 044830          477 ---GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN  553 (801)
Q Consensus       477 ---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  553 (801)
                         +..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.  ++|+.|+|++|++++..+.
T Consensus       467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~  544 (844)
T 3j0a_A          467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD  544 (844)
T ss_dssp             CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred             cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence               34456788999999999999999999999999999999999999999988877766  8999999999999988765


Q ss_pred             CCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830          554 NVPSIKRPFPELRIIDISRNGFTGLLPARYF  584 (801)
Q Consensus       554 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~  584 (801)
                      .       +.+|+.|++++|++.+..+...|
T Consensus       545 ~-------~~~L~~l~l~~Np~~C~c~~~~f  568 (844)
T 3j0a_A          545 V-------FVSLSVLDITHNKFICECELSTF  568 (844)
T ss_dssp             C-------CSSCCEEEEEEECCCCSSSCCSH
T ss_pred             H-------hCCcCEEEecCCCcccccccHHH
Confidence            4       35899999999999877664433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.4e-47  Score=434.01  Aligned_cols=499  Identities=19%  Similarity=0.217  Sum_probs=287.6

Q ss_pred             CcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccc
Q 044830           27 CCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGI  106 (801)
Q Consensus        27 ~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~  106 (801)
                      .|.|.|+ |+.          ++++++ .+|+  .+.  ++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++.
T Consensus         3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDG----------RSRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EEC----------TTSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EEC----------CCCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            5999998 854          344443 3444  332  6888888888888765 456688888888888888888877


Q ss_pred             cccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc-C
Q 044830          107 VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG-E  185 (801)
Q Consensus       107 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~-~  185 (801)
                      .|..|+++++|++|++++|.                             +.+..+..+..+  ++|++|++++|.+++ .
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n~-----------------------------l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~  114 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDNH-----------------------------LSSLSSSWFGPL--SSLKYLNLMGNPYQTLG  114 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-----------------------------CCSCCHHHHTTC--TTCCEEECTTCCCSSSC
T ss_pred             ChhhccccccCCEEECCCCc-----------------------------cCccCHHHhccC--CCCcEEECCCCcccccc
Confidence            77788888888888888772                             233334444444  555555555555554 2


Q ss_pred             CCccCCCCCCCCEEeccCCCCCccCCC-C-CCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCccccc
Q 044830          186 FPIDIFHFPFLRQLTLSDNGLLTGNLP-T-SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS  263 (801)
Q Consensus       186 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~-~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~  263 (801)
                      .|..+.++++|++|++++|.... .++ . +..+++|++|++++|.+++..|..++.+++|++|+++.|.+....+..+.
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  193 (549)
T 2z81_A          115 VTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD  193 (549)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred             hhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHh
Confidence            34456666666666666663222 222 1 22566666666666666666666666677777777776666532222234


Q ss_pred             CCCCCCEEEcCCCCCcccc--C-ccccCCCCCcEeeccCeeeeeeCCc----cCcCCCCCCEEEcccccccccCCCCCCC
Q 044830          264 NLKQLTVLNLEDNQFSGEF--P-DVFGNLSKLTRISLAHLNFTGQLPL----SAFNLTQLSLLELSRNQFVGQLPCHASC  336 (801)
Q Consensus       264 ~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l~~n~~~~~~~~~~~~  336 (801)
                      .+++|++|++++|.+.+..  | .....+++|+.|++++|.+.+..+.    .+..+++|+.+++++|.+.+.....   
T Consensus       194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~---  270 (549)
T 2z81_A          194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN---  270 (549)
T ss_dssp             STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---
T ss_pred             hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc---
Confidence            5666777777776666431  1 1223455666666666666543322    2334556666666666554321100   


Q ss_pred             CCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCcccc
Q 044830          337 LPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSR  416 (801)
Q Consensus       337 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  416 (801)
                                       +.....+..+++|+.|++.++.+..... +.  .+.                  . ......+
T Consensus       271 -----------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~--~l~------------------~-~~~~~~~  311 (549)
T 2z81_A          271 -----------------PSESDVVSELGKVETVTIRRLHIPQFYL-FY--DLS------------------T-VYSLLEK  311 (549)
T ss_dssp             -----------------CCTTTCCCCCTTCCEEEEESCBCSCGGG-SC--CCC------------------H-HHHHSTT
T ss_pred             -----------------ccchhhhhhhcccccccccccccchhhh-cc--cch------------------h-hhhhccc
Confidence                             0000011124455555555554321100 00  000                  0 0001234


Q ss_pred             ccEEEecCCCCCCCCcccc-ccCCCCCEEECcCCCCcccCC---ccccCCCCCCEEeCCCCcccccCCccccCCCCccEE
Q 044830          417 IRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIP---QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL  492 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  492 (801)
                      |+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+|   ..++.+++|++|++++|++++..+            
T Consensus       312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------  378 (549)
T 2z81_A          312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------------  378 (549)
T ss_dssp             CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------------
T ss_pred             ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------------
Confidence            555555555554 334333 345555555555555554432   224444555555555555543221            


Q ss_pred             ECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccC
Q 044830          493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR  572 (801)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~  572 (801)
                                .+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+. +..+      .++|++||+++
T Consensus       379 ----------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~------~~~L~~L~Ls~  440 (549)
T 2z81_A          379 ----------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI------PQTLEVLDVSN  440 (549)
T ss_dssp             ----------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS------CTTCSEEECCS
T ss_pred             ----------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh------cCCceEEECCC
Confidence                      0022444445555555555444 2344444555555555555554421 1111      25678888888


Q ss_pred             CcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccc
Q 044830          573 NGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK  652 (801)
Q Consensus       573 N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  652 (801)
                      |++++.++                                               .++.|++|||++|+++ .+|. .+.
T Consensus       441 N~l~~~~~-----------------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~  471 (549)
T 2z81_A          441 NNLDSFSL-----------------------------------------------FLPRLQELYISRNKLK-TLPD-ASL  471 (549)
T ss_dssp             SCCSCCCC-----------------------------------------------CCTTCCEEECCSSCCS-SCCC-GGG
T ss_pred             CChhhhcc-----------------------------------------------cCChhcEEECCCCccC-cCCC-ccc
Confidence            88775421                                               1356788899999888 5665 467


Q ss_pred             cccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830          653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       653 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      +++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|.
T Consensus       472 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            89999999999999998888899999999999999999998884

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.5e-48  Score=455.01  Aligned_cols=476  Identities=19%  Similarity=0.274  Sum_probs=289.5

Q ss_pred             cccccCCCCCCCCCCCCC-----CC--ccc------------ceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCC
Q 044830            8 HCDAAVTYPKTKSWNKDG-----DC--CSW------------DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHL   68 (801)
Q Consensus         8 ~~~~~~~~~~l~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L   68 (801)
                      -.|++...+   +|+.+.     +|  |.|            .||.|+. .++|++|+|+++++.|.+++  +++++++|
T Consensus       276 ~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L  349 (876)
T 4ecn_A          276 AIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPD--AIGQLTEL  349 (876)
T ss_dssp             HHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECG--GGGGCTTC
T ss_pred             HHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCch--HHhccccc
Confidence            344444433   897543     56  999            9999986 58999999999999999998  99999999


Q ss_pred             CeeeC-CCCCCCCCcccccccCC-CCCCE--------------EeC-CCCCCcccc-----------ccCCcCCCCCCEE
Q 044830           69 QKLNL-ACNDFNGTKISSNFGQF-TKLTH--------------LNL-SFSYFSGIV-----------PSQISRLSKLVAL  120 (801)
Q Consensus        69 ~~L~L-s~n~~~~~~~~~~~~~l-~~L~~--------------L~L-s~n~i~~~~-----------p~~l~~l~~L~~L  120 (801)
                      ++|+| ++|.+.+. .+...... ..+..              ++. ....+.+..           +........++.+
T Consensus       350 ~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l  428 (876)
T 4ecn_A          350 KVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT  428 (876)
T ss_dssp             CEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTT
T ss_pred             eEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhc
Confidence            99999 88876544 11000000 00000              000 000000000           0000111112222


Q ss_pred             eCCC--CcCCCccccCchhHhhcCCCCCCEEeCCCccCCC-----------------CCchhhh--ccCCCCccEEEccC
Q 044830          121 DLSS--DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFS-----------------VVPSSLL--NLSSASLISLSLGN  179 (801)
Q Consensus       121 ~Ls~--n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------------~~~~~l~--~l~~~~L~~L~L~~  179 (801)
                      .+..  |  .+.   + +|..+.++++|+.|++++|.+++                 .+|..++  ++  ++|++|+|++
T Consensus       429 ~l~~~~N--~L~---~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~  500 (876)
T 4ecn_A          429 QIGNLTN--RIT---F-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL--KDLTDVELYN  500 (876)
T ss_dssp             TTTCCSC--EEE---E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTCCEEEEES
T ss_pred             eeccccC--ccc---c-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC--CCCCEEECcC
Confidence            2211  1  111   1 44555555555555555555555                 3566655  66  6777777777


Q ss_pred             CcCccCCCccCCCCCCCCEEeccCCCCCcc-CCCCC--------CCCCCCCEEEccCccCcccCcc--cccCCCCCCEEE
Q 044830          180 CFLRGEFPIDIFHFPFLRQLTLSDNGLLTG-NLPTS--------NWSSPLRILDLSITKFSGKIPD--TIGNLRDLKFLD  248 (801)
Q Consensus       180 n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~~~~~--------~~~~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~  248 (801)
                      |.+.+.+|..+.++++|++|++++|+.+++ .+|..        ..+++|++|++++|.++ .+|.  .++++++|+.|+
T Consensus       501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD  579 (876)
T ss_dssp             CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred             CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence            777777777777777777777777742444 33321        24457777777777777 6676  777777777777


Q ss_pred             cccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCC-CcEeeccCeeeeeeCCccCcCCCC--CCEEEccccc
Q 044830          249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSK-LTRISLAHLNFTGQLPLSAFNLTQ--LSLLELSRNQ  325 (801)
Q Consensus       249 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~l~~n~  325 (801)
                      +++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++.  |+.|++++|.
T Consensus       580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence            7777777 666 6777777777777777777 66777777777 777777777777 56666655543  7777777777


Q ss_pred             ccccCCCCC------CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEE
Q 044830          326 FVGQLPCHA------SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHL  399 (801)
Q Consensus       326 ~~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L  399 (801)
                      +.+.+|...      .+++|+.|++++|.++ .+|..++.  .+++|+.|++++|.++ .+|........          
T Consensus       656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~--~l~~L~~L~Ls~N~L~-~ip~~~~~~~~----------  721 (876)
T 4ecn_A          656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA--TGSPISTIILSNNLMT-SIPENSLKPKD----------  721 (876)
T ss_dssp             TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH--TTCCCSEEECCSCCCS-CCCTTSSSCTT----------
T ss_pred             CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc--cCCCCCEEECCCCcCC-ccChHHhcccc----------
Confidence            776554322      3346777777777776 55655542  1566777777777665 33332200000          


Q ss_pred             EecCCCCCCCCCCccccccEEEecCCCCCCCCccccc--cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC-----
Q 044830          400 DVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC--NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK-----  472 (801)
Q Consensus       400 ~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~-----  472 (801)
                               .....+++|+.|++++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++     
T Consensus       722 ---------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          722 ---------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             ---------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ---------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence                     00011347777777777777 5666665  77778888888887776 566777777788887766     


Q ss_pred             -CcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhc
Q 044830          473 -NQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT  531 (801)
Q Consensus       473 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  531 (801)
                       |++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence             455555555555555566666666555 34554433  355555555555544443333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-46  Score=430.47  Aligned_cols=499  Identities=23%  Similarity=0.247  Sum_probs=280.4

Q ss_pred             CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830           66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE  145 (801)
Q Consensus        66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~  145 (801)
                      +++++|+|++|.+++. .+..|..+++|++|+|++|.+++..|..|+++++|++|++++|                    
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n--------------------   86 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--------------------   86 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--------------------
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC--------------------
Confidence            4677777777777654 3445777777777777777777666666777777777777666                    


Q ss_pred             CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEE
Q 044830          146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILD  224 (801)
Q Consensus       146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~  224 (801)
                               .+....+..|..+  ++|++|++++|.+++..+..++++++|++|++++|.+....+|..+ .+++|++|+
T Consensus        87 ---------~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  155 (570)
T 2z63_A           87 ---------PIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (570)
T ss_dssp             ---------CCCEECTTTTTTC--TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             ---------cCCccCHhhhcCc--cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence                     2333333444444  5555555555555544333455666666666666643332334433 455555555


Q ss_pred             ccCccCcccCcccccCCCCC----CEEEcccccCcccCcccccCCCCCCEEEcCCCCCcc-ccCccccCCCCCcEeeccC
Q 044830          225 LSITKFSGKIPDTIGNLRDL----KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAH  299 (801)
Q Consensus       225 Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~  299 (801)
                      +++|.+++..+..++.+++|    +.|++++|.+.+..|..+..+ +|++|++++|.... .++..+..+++++.+.+..
T Consensus       156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  234 (570)
T 2z63_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  234 (570)
T ss_dssp             CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred             CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecc
Confidence            55555555555555555555    566666666665555555444 56666666653321 2344455555555554432


Q ss_pred             eeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCC-cCCcccchhhcCCCCCCCccEEEccCCCccc
Q 044830          300 LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN-FLDGRIPSWLFNLSTSENLVELDLSNNKLTG  378 (801)
Q Consensus       300 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  378 (801)
                      ..+..        ...++.+  ....+.+     .....++.++++++ .+.+.+|..+..   +++|+.|++++|.+++
T Consensus       235 ~~~~~--------~~~l~~~--~~~~~~~-----l~~l~l~~l~l~~~~~~~~~~~~~~~~---l~~L~~L~l~~~~l~~  296 (570)
T 2z63_A          235 GEFRN--------EGNLEKF--DKSALEG-----LCNLTIEEFRLAYLDYYLDDIIDLFNC---LTNVSSFSLVSVTIER  296 (570)
T ss_dssp             EECCC--------CSSCEEC--CTTTTGG-----GGGSEEEEEEEEETTEEESCSTTTTGG---GTTCSEEEEESCEECS
T ss_pred             ccccC--------chhhhhc--chhhhcc-----ccccchhhhhhhcchhhhhhchhhhcC---cCcccEEEecCccchh
Confidence            22110        0111100  0000000     00012344455544 444445555544   5666666666666552


Q ss_pred             cccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccC--C
Q 044830          379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI--P  456 (801)
Q Consensus       379 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~  456 (801)
                       +|.... .     . .++.|++++|.+..++...+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +
T Consensus       297 -l~~~~~-~-----~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~  366 (570)
T 2z63_A          297 -VKDFSY-N-----F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS  366 (570)
T ss_dssp             -CCBCCS-C-----C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE
T ss_pred             -hhhhhc-c-----C-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc
Confidence             332220 0     0 344444444444433333345556666666655544333  45555666666666555432  4


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchhccCCC
Q 044830          457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYWTATLP  535 (801)
Q Consensus       457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  535 (801)
                      ..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+.++++|++|++++|++.+..|..+    
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----  441 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----  441 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT----
T ss_pred             ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh----
Confidence            4455555555555555555533222 5555555555555555544333 234444445555555444444444433    


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC-ccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeE
Q 044830          536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT-GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM  614 (801)
Q Consensus       536 ~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  614 (801)
                                              ..+++|++|++++|+++ +.+|.. +                              
T Consensus       442 ------------------------~~l~~L~~L~l~~n~l~~~~~p~~-~------------------------------  466 (570)
T 2z63_A          442 ------------------------NGLSSLEVLKMAGNSFQENFLPDI-F------------------------------  466 (570)
T ss_dssp             ------------------------TTCTTCCEEECTTCEEGGGEECSC-C------------------------------
T ss_pred             ------------------------hcCCcCcEEECcCCcCccccchhh-h------------------------------
Confidence                                    45555666666666554 234421 1                              


Q ss_pred             EEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecC
Q 044830          615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI  694 (801)
Q Consensus       615 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  694 (801)
                                  ..++.|++|||++|++++..|..++.+++|+.|+|++|++++..|..+.++++|+.|++++|+++|.+
T Consensus       467 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          467 ------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             ------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ------------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence                        11456788889999998888999999999999999999999988889999999999999999999999


Q ss_pred             CCC
Q 044830          695 PQG  697 (801)
Q Consensus       695 P~~  697 (801)
                      |..
T Consensus       535 ~~~  537 (570)
T 2z63_A          535 PRI  537 (570)
T ss_dssp             TTT
T ss_pred             cch
Confidence            864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-44  Score=412.16  Aligned_cols=492  Identities=21%  Similarity=0.188  Sum_probs=368.3

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL  249 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  249 (801)
                      +++++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..|..|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            45777777777777666666777777777777777433222222336777777777777777666677777888888888


Q ss_pred             ccccCcccCcccccCCCCCCEEEcCCCCCcc-ccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCC----CEEEcccc
Q 044830          250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL----SLLELSRN  324 (801)
Q Consensus       250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~l~~n  324 (801)
                      ++|.+.+..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+..+..+..+++|    +.|++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            8887776555567778888888888887776 357778888888888888888777666667766666    77888888


Q ss_pred             cccccCCCCCCCCCCCEEEccCCcCCc-ccchhhcCCCCCCCccEEEccCCCcc--ccccccCCCCcccccceeeeEEEe
Q 044830          325 QFVGQLPCHASCLPLSHLKLGGNFLDG-RIPSWLFNLSTSENLVELDLSNNKLT--GQIFQLDQWPVERISSVELRHLDV  401 (801)
Q Consensus       325 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~~~~~~~~~~~~~~~~L~~L~l  401 (801)
                      .+.+..+..+...+|+.|++++|.... .++..+..   ++.++.+.+....+.  +.+.......+..+....++.+++
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG---LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT---TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcC---ccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            887766666655578888887775432 24444444   455555544332221  111111112233444457788888


Q ss_pred             cCC-CCCCCCC---CccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccc
Q 044830          402 QSN-LLQRLPF---ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG  477 (801)
Q Consensus       402 ~~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  477 (801)
                      +.+ .+.+..+   ..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence            877 4444433   23689999999999998 578888888 9999999999998 5554  478899999999999887


Q ss_pred             cCCccccCCCCccEEECCCCcCCCCC--CccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCC
Q 044830          478 SIPQIFSKCYDLVALNLNDNELEGKL--PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNV  555 (801)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  555 (801)
                      ..+.  ..+++|++|++++|.+++..  |..+.++++|++|++++|++.+..+. +..+++|++|++++|.+.+..+.. 
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-  415 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-  415 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-
Confidence            6665  67899999999999998654  67888999999999999999877665 889999999999999998765522 


Q ss_pred             CCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEE
Q 044830          556 PSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTI  635 (801)
Q Consensus       556 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  635 (801)
                        .+..+++|++|++++|.+++..|.. +.                                          .++.|+.|
T Consensus       416 --~~~~l~~L~~L~l~~n~l~~~~~~~-~~------------------------------------------~l~~L~~L  450 (570)
T 2z63_A          416 --VFLSLRNLIYLDISHTHTRVAFNGI-FN------------------------------------------GLSSLEVL  450 (570)
T ss_dssp             --TTTTCTTCCEEECTTSCCEECCTTT-TT------------------------------------------TCTTCCEE
T ss_pred             --hhhcCCCCCEEeCcCCcccccchhh-hh------------------------------------------cCCcCcEE
Confidence              2478999999999999998776643 11                                          24678999


Q ss_pred             EccCCeee-eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCCCcCcCcCCCCCC
Q 044830          636 DLSNNRFE-GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFDSFQNDSFIGNLG  713 (801)
Q Consensus       636 dLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~  713 (801)
                      ++++|+++ +.+|..++.+++|+.|+|++|++++..|..+..+++|++|++++|++++..|.. .++..+....+.+|+.
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            99999998 689999999999999999999999999999999999999999999999877754 3455556666778876


Q ss_pred             CCCCC
Q 044830          714 LCGFA  718 (801)
Q Consensus       714 lcg~~  718 (801)
                      -|..|
T Consensus       531 ~~~~~  535 (570)
T 2z63_A          531 DCSCP  535 (570)
T ss_dssp             CCCTT
T ss_pred             cCCCc
Confidence            66543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.2e-43  Score=408.79  Aligned_cols=516  Identities=23%  Similarity=0.214  Sum_probs=345.4

Q ss_pred             CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830           66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE  145 (801)
Q Consensus        66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~  145 (801)
                      +++++|||++|+|+.. .+..|.++++|++|+|++|.|+++.|.+|.++++|++|+|++|.                   
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-------------------  111 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------------  111 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------------
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-------------------
Confidence            4688888888888764 34568888888888888888887777778888888888888772                   


Q ss_pred             CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEE
Q 044830          146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILD  224 (801)
Q Consensus       146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~  224 (801)
                                +.+..+..|.++  ++|++|+|++|.+++..+..++++++|++|++++|.+.....|... .+++|++|+
T Consensus       112 ----------l~~l~~~~f~~L--~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          112 ----------IQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             ----------CCEECGGGGTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             ----------CCCCCHHHhcCC--CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence                      223334445555  5566666666666555445566666666666666644444444444 556666666


Q ss_pred             ccCccCcccCcccccCCCCC----CEEEcccccCcccCcccccCCCCCCEEEcCCCCCccc-cCccccCCCCCcEeeccC
Q 044830          225 LSITKFSGKIPDTIGNLRDL----KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAH  299 (801)
Q Consensus       225 Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~  299 (801)
                      +++|.+++..+..+..+.++    ..++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++...+..
T Consensus       180 L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             ccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            66666665555555544332    356666666654333322 333455566665544322 223444555555444432


Q ss_pred             eeeee------eCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccC
Q 044830          300 LNFTG------QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN  373 (801)
Q Consensus       300 n~l~~------~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~  373 (801)
                      +....      .....+....                       .+....+..+.................+++.+++.+
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~-----------------------~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLC-----------------------NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGG-----------------------GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             ccccccccccccccccccccc-----------------------chhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            21110      0111111122                       222222222211111111111111244566666666


Q ss_pred             CCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcc
Q 044830          374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG  453 (801)
Q Consensus       374 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  453 (801)
                      +.+........   .     ..++.|++.+|.+...+...+..++.+++..|.+...  .....+++|+.|++++|.+..
T Consensus       316 ~~~~~~~~~~~---~-----~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~  385 (635)
T 4g8a_A          316 VTIERVKDFSY---N-----FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSF  385 (635)
T ss_dssp             CEEEECGGGGS---C-----CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBE
T ss_pred             ccccccccccc---c-----hhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccchhhcccccc
Confidence            65543211110   1     1566677777777666666677888899988887643  234578899999999998853


Q ss_pred             --cCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchh
Q 044830          454 --MIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYW  530 (801)
Q Consensus       454 --~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~  530 (801)
                        ..+..+..+.+|+++++..+.... .+..+..+++|+.+++.+|......+ ..+..+++++.++++.|.+.+..+..
T Consensus       386 ~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~  464 (635)
T 4g8a_A          386 KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  464 (635)
T ss_dssp             EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             ccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence              455666778899999999998874 45667889999999999888765544 46788999999999999999999999


Q ss_pred             ccCCCCCCEEEccCCcCcc-cCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCC
Q 044830          531 TATLPRLQVLVLRSNSFHG-PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD  609 (801)
Q Consensus       531 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  609 (801)
                      +..++.++.|++++|.+.. ..|..    +..+++|++|||++|++++..|.. |.+                       
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~----~~~l~~L~~L~Ls~N~L~~l~~~~-f~~-----------------------  516 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTA-FNS-----------------------  516 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTT-TTT-----------------------
T ss_pred             cccchhhhhhhhhhcccccccCchh----hhhccccCEEECCCCccCCcChHH-HcC-----------------------
Confidence            9999999999999997544 34443    478999999999999999877743 222                       


Q ss_pred             ceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCC-CCCCeEeCcCC
Q 044830          610 QYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSL-TALSVLNLSFN  688 (801)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N  688 (801)
                                         ++.|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+ ++|++|++++|
T Consensus       517 -------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          517 -------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             -------------------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             -------------------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence                               4568999999999999999999999999999999999999999999998 68999999999


Q ss_pred             cceecCC
Q 044830          689 QLVGPIP  695 (801)
Q Consensus       689 ~l~g~iP  695 (801)
                      ++++...
T Consensus       578 p~~C~C~  584 (635)
T 4g8a_A          578 DFACTCE  584 (635)
T ss_dssp             CBCCSGG
T ss_pred             CCcccCC
Confidence            9988654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.9e-46  Score=429.01  Aligned_cols=452  Identities=19%  Similarity=0.238  Sum_probs=284.6

Q ss_pred             CCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccC------CC------CCchhhhccCCCCccEEEccCCcC
Q 044830          115 SKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQM------FS------VVPSSLLNLSSASLISLSLGNCFL  182 (801)
Q Consensus       115 ~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------~~------~~~~~l~~l~~~~L~~L~L~~n~l  182 (801)
                      .+++.|+|+++  .+.   +.+|..++++++|++|++++|.+      .+      .+|...  +  ..++ ++++++.+
T Consensus        81 ~~V~~L~L~~~--~l~---g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~--~~l~-l~l~~~~l  150 (636)
T 4eco_A           81 GRVTGLSLEGF--GAS---GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K--QKMR-MHYQKTFV  150 (636)
T ss_dssp             CCEEEEECTTS--CCE---EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H--HHHH-THHHHHHT
T ss_pred             CCEEEEEecCc--ccC---CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--H--HHHH-hhHHHhhh
Confidence            46777888877  333   56777778888888888887754      22      333333  2  4455 66666666


Q ss_pred             ccCCCccCCC-CCCCCEEeccCCCCCccCCCCCCCCCCCCEEEc--cCccCcccCcccccCCCCCCEEEcccccCccc--
Q 044830          183 RGEFPIDIFH-FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDL--SITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ--  257 (801)
Q Consensus       183 ~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--  257 (801)
                      .+.+|..+.. +..+..+++....+..      .....++.+.+  ..|.+++ +|..++++++|++|++++|.+++.  
T Consensus       151 ~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~  223 (636)
T 4eco_A          151 DYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI  223 (636)
T ss_dssp             CCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB
T ss_pred             ccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccc
Confidence            6665555442 1112222222111100      01111222222  2456666 677777777777777777777764  


Q ss_pred             ---------------Cccccc--CCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCee-eee-eCCccCcCC-----
Q 044830          258 ---------------VPASLS--NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLN-FTG-QLPLSAFNL-----  313 (801)
Q Consensus       258 ---------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l-----  313 (801)
                                     +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+     
T Consensus       224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~  303 (636)
T 4eco_A          224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV  303 (636)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred             cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence                           666666  67777777777777666666666666677777777666 665 566555544     


Q ss_pred             -CCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccch--hhcCCCCCCCccEEEccCCCccccccccCCCCccc
Q 044830          314 -TQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPS--WLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVER  390 (801)
Q Consensus       314 -~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~  390 (801)
                       ++|++|++++|.++                        .+|.  .+..   +++|++|++++|.++|.+| .+ .    
T Consensus       304 l~~L~~L~L~~n~l~------------------------~ip~~~~l~~---l~~L~~L~L~~N~l~g~ip-~~-~----  350 (636)
T 4eco_A          304 GEKIQIIYIGYNNLK------------------------TFPVETSLQK---MKKLGMLECLYNQLEGKLP-AF-G----  350 (636)
T ss_dssp             GGTCCEEECCSSCCS------------------------SCCCHHHHTT---CTTCCEEECCSCCCEEECC-CC-E----
T ss_pred             CCCCCEEECCCCcCC------------------------ccCchhhhcc---CCCCCEEeCcCCcCccchh-hh-C----
Confidence             55555555555544                        4444  4444   5566666666666655554 11 1    


Q ss_pred             ccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCC-CCEEECcCCCCcccCCccccCCC--CCCE
Q 044830          391 ISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST-IEYLNLSNNSLSGMIPQCLANFD--SLSL  467 (801)
Q Consensus       391 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~--~L~~  467 (801)
                                            .+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.  +|++
T Consensus       351 ----------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          351 ----------------------SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             ----------------------EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred             ----------------------CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence                                  1234555555666555 55666666666 777777777776 5565555543  6777


Q ss_pred             EeCCCCcccccCCcccc-------CCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC-----
Q 044830          468 LDLRKNQFRGSIPQIFS-------KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP-----  535 (801)
Q Consensus       468 L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----  535 (801)
                      |++++|.+.+..|..+.       .+++|++|++++|.+++..+..+..+++|++|++++|++....+..+....     
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN  486 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence            77777777766666666       566777777777777743333455577777777777777643333333222     


Q ss_pred             --CCCEEEccCCcCcccCCCCCCCCCC--CCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCce
Q 044830          536 --RLQVLVLRSNSFHGPIYNNVPSIKR--PFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQY  611 (801)
Q Consensus       536 --~L~~L~L~~N~l~~~~~~~~~~~~~--~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  611 (801)
                        +|++|+|++|+++ .+|..+    .  .+++|+.|+|++|++++ +|..+.                           
T Consensus       487 l~~L~~L~Ls~N~l~-~lp~~~----~~~~l~~L~~L~Ls~N~l~~-ip~~~~---------------------------  533 (636)
T 4eco_A          487 TYLLTSIDLRFNKLT-KLSDDF----RATTLPYLVGIDLSYNSFSK-FPTQPL---------------------------  533 (636)
T ss_dssp             GGGCCEEECCSSCCC-BCCGGG----STTTCTTCCEEECCSSCCSS-CCCGGG---------------------------
T ss_pred             cCCccEEECcCCcCC-ccChhh----hhccCCCcCEEECCCCCCCC-cChhhh---------------------------
Confidence              7777777777776 333322    3  67788888888888876 664421                           


Q ss_pred             eeEEEEeccchhhhhhhcccceEEEc------cCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeC
Q 044830          612 YSMILTYKGVDLEMERVLNIFTTIDL------SNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL  685 (801)
Q Consensus       612 ~~~~~~~~~~~~~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  685 (801)
                                      .++.|+.|+|      ++|++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.|++
T Consensus       534 ----------------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L  594 (636)
T 4eco_A          534 ----------------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI  594 (636)
T ss_dssp             ----------------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred             ----------------cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence                            1345677777      56888999999999999999999999999 68888876  79999999


Q ss_pred             cCCccee
Q 044830          686 SFNQLVG  692 (801)
Q Consensus       686 s~N~l~g  692 (801)
                      ++|++..
T Consensus       595 s~N~l~~  601 (636)
T 4eco_A          595 KDNPNIS  601 (636)
T ss_dssp             CSCTTCE
T ss_pred             cCCCCcc
Confidence            9998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.9e-44  Score=408.81  Aligned_cols=498  Identities=18%  Similarity=0.181  Sum_probs=320.5

Q ss_pred             CCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCC
Q 044830           68 LQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELR  147 (801)
Q Consensus        68 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~  147 (801)
                      ..+.+++++.++.  +|..+.  ++|++|+|++|.+++..|..|.++++|++|++++|                      
T Consensus         7 ~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----------------------   60 (549)
T 2z81_A            7 SGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS----------------------   60 (549)
T ss_dssp             TSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS----------------------
T ss_pred             CceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC----------------------
Confidence            3345777777764  555443  78888888888888777777888888888887776                      


Q ss_pred             EEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEcc
Q 044830          148 YLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLS  226 (801)
Q Consensus       148 ~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls  226 (801)
                             .+.+..|..|..+  ++|++|++++|.+++..+..++++++|++|++++|.+.....+..+ .+++|++|+++
T Consensus        61 -------~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  131 (549)
T 2z81_A           61 -------RINTIEGDAFYSL--GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG  131 (549)
T ss_dssp             -------CCCEECTTTTTTC--TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred             -------CcCccChhhcccc--ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence                   3344455667777  8889999999988877776788888888888888854433333333 56666666666


Q ss_pred             CccCcccCc-ccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeee
Q 044830          227 ITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ  305 (801)
Q Consensus       227 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  305 (801)
                      +|.+.+.+| ..+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+....+..+..+++|++|++++|.+.+.
T Consensus       132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            665333333 4566666666666666666665566666666666666666555422222223445555555555544432


Q ss_pred             CCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcC-CCCCCCccEEEccCCCccccccccC
Q 044830          306 LPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN-LSTSENLVELDLSNNKLTGQIFQLD  384 (801)
Q Consensus       306 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~~~~~  384 (801)
                      ...                    ..+....+++|+.|++++|.+++..+..+.. +..+++|+.+++++|.+.+.. .+.
T Consensus       212 ~~~--------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~-~~~  270 (549)
T 2z81_A          212 QFS--------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG-DFN  270 (549)
T ss_dssp             CCC--------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS-CCC
T ss_pred             ccc--------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc-ccc
Confidence            100                    0001113455666666666665544433321 122567777777777665321 000


Q ss_pred             CCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCC
Q 044830          385 QWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS  464 (801)
Q Consensus       385 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  464 (801)
                      ...                    ........+++.|++.++.+....  .+                 ..++..+...++
T Consensus       271 ~~~--------------------~~~~~~l~~L~~L~l~~~~i~~~~--~~-----------------~~l~~~~~~~~~  311 (549)
T 2z81_A          271 PSE--------------------SDVVSELGKVETVTIRRLHIPQFY--LF-----------------YDLSTVYSLLEK  311 (549)
T ss_dssp             CCT--------------------TTCCCCCTTCCEEEEESCBCSCGG--GS-----------------CCCCHHHHHSTT
T ss_pred             ccc--------------------hhhhhhhcccccccccccccchhh--hc-----------------ccchhhhhhccc
Confidence            000                    000111234444444444332110  00                 011222333456


Q ss_pred             CCEEeCCCCcccccCCccc-cCCCCccEEECCCCcCCCCCC---ccccCCCCCcEEeCCCCcCCCCcc--hhccCCCCCC
Q 044830          465 LSLLDLRKNQFRGSIPQIF-SKCYDLVALNLNDNELEGKLP---PSLANCGDLEVLDVGNNKINDAFP--YWTATLPRLQ  538 (801)
Q Consensus       465 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~  538 (801)
                      |+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|   ..+..+++|++|++++|++++..+  ..+..+++|+
T Consensus       312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            777777777776 455444 467778888888887776553   336778899999999999987643  5688999999


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEe
Q 044830          539 VLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTY  618 (801)
Q Consensus       539 ~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (801)
                      +|++++|++++ +|.    .+..+++|++|++++|++++ +|...                                   
T Consensus       391 ~L~Ls~N~l~~-lp~----~~~~~~~L~~L~Ls~N~l~~-l~~~~-----------------------------------  429 (549)
T 2z81_A          391 SLDISRNTFHP-MPD----SCQWPEKMRFLNLSSTGIRV-VKTCI-----------------------------------  429 (549)
T ss_dssp             EEECTTCCCCC-CCS----CCCCCTTCCEEECTTSCCSC-CCTTS-----------------------------------
T ss_pred             EEECCCCCCcc-CCh----hhcccccccEEECCCCCccc-ccchh-----------------------------------
Confidence            99999999983 443    34788999999999999873 34221                                   


Q ss_pred             ccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-
Q 044830          619 KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-  697 (801)
Q Consensus       619 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-  697 (801)
                                .+.|++|||++|++++.+    +.+++|+.|+|++|+++ .+|. ...+++|++|++++|++++.+|.. 
T Consensus       430 ----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          430 ----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             ----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred             ----------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence                      245799999999999753    57899999999999999 6776 578999999999999999987753 


Q ss_pred             CCCCCcCcCcCCCCCCCCCCC
Q 044830          698 KQFDSFQNDSFIGNLGLCGFA  718 (801)
Q Consensus       698 ~~~~~~~~~~~~gn~~lcg~~  718 (801)
                      ..+..+......||+..|..|
T Consensus       494 ~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          494 DRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGCTTCCEEECCSSCBCCCHH
T ss_pred             hcCcccCEEEecCCCccCCCc
Confidence            345566666788998887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.2e-43  Score=401.04  Aligned_cols=463  Identities=19%  Similarity=0.168  Sum_probs=309.8

Q ss_pred             CeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCE
Q 044830           69 QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRY  148 (801)
Q Consensus        69 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~  148 (801)
                      ++||+++|.++.  +|..+.  ++|++|+|++|.+++..|..|.++++|++|++++|.  +.   +..|..+.++++|++
T Consensus         3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQ---YLDISVFKFNQELEY   73 (520)
T ss_dssp             CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CC---EEEGGGGTTCTTCCE
T ss_pred             ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc--cC---CcChHHhhcccCCCE
Confidence            578899998874  565555  889999999999888777788888888888888883  32   334566777777777


Q ss_pred             EeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc-CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCC--CEEEc
Q 044830          149 LLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG-EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPL--RILDL  225 (801)
Q Consensus       149 L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L--~~L~L  225 (801)
                      |++++|.+.. +|..  .+  ++|++|++++|.+++ .+|..++++++|++|++++|.+...   .+..+++|  ++|++
T Consensus        74 L~Ls~N~l~~-lp~~--~l--~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           74 LDLSHNKLVK-ISCH--PT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLL  145 (520)
T ss_dssp             EECCSSCCCE-EECC--CC--CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEE
T ss_pred             EecCCCceee-cCcc--cc--CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEe
Confidence            7777777763 3333  44  667777777777665 3556666666666666666633221   11133344  55555


Q ss_pred             cCccC--cccCcccccCCC-CCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCee-
Q 044830          226 SITKF--SGKIPDTIGNLR-DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLN-  301 (801)
Q Consensus       226 s~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-  301 (801)
                      ++|.+  .+..|..+..+. ....+++++|.+.+.++.                       ..+..+++|+.+++++|. 
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD-----------------------VSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC-----------------------CCCTTCSEEEECCEEECCS
T ss_pred             ecccccccccccccccccccceEEEEeccCcchhhhhh-----------------------hhhhcccceeecccccccc
Confidence            55555  444444444333 122334444444332221                       233444444444444443 


Q ss_pred             ------eeeeCCccCcCCCCCCEEEcccccccccCCCC----CCCCCCCEEEccCCcCCcccchhhcCC--CCCCCccEE
Q 044830          302 ------FTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH----ASCLPLSHLKLGGNFLDGRIPSWLFNL--STSENLVEL  369 (801)
Q Consensus       302 ------l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~~~~L~~L  369 (801)
                            +.+.+| .+..+++|+.|++++|.+.+.....    ...++|++|++++|.++|.+|..++..  ..+++|+.+
T Consensus       203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                  333333 3444455555555544443321110    012355555555555555555554211  236667777


Q ss_pred             EccCCCccccccc-cCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCCCEEECc
Q 044830          370 DLSNNKLTGQIFQ-LDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLS  447 (801)
Q Consensus       370 ~Ls~n~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  447 (801)
                      ++++|.+  .+|. .. ..  .+...+++.|++++|.+..... ..+++|++|++++|++++..|..++.+++|++|+++
T Consensus       282 ~l~~n~~--~~p~~~~-~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          282 QVVSDVF--GFPQSYI-YE--IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ  356 (520)
T ss_dssp             EEEECCC--CSCTHHH-HH--HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred             cccccce--ecchhhh-hc--ccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence            7777766  2331 10 00  0011257777777777776664 567899999999999999899999999999999999


Q ss_pred             CCCCcc--cCCccccCCCCCCEEeCCCCcccccCCc-cccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830          448 NNSLSG--MIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       448 ~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      +|.+++  .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|++.
T Consensus       357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK  434 (520)
T ss_dssp             SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred             CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence            999996  5667899999999999999999985665 488899999999999999988777664  79999999999998


Q ss_pred             CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830          525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF  584 (801)
Q Consensus       525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~  584 (801)
                       .+|..+..+++|++|++++|++++ +|..   .+..+++|+.|++++|++++..+...+
T Consensus       435 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          435 -SIPKQVVKLEALQELNVASNQLKS-VPDG---IFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             -ccchhhhcCCCCCEEECCCCcCCc-cCHH---HhccCCcccEEECcCCCCcccCCchHH
Confidence             667777799999999999999985 3332   247899999999999999988775554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-44  Score=409.01  Aligned_cols=464  Identities=20%  Similarity=0.191  Sum_probs=301.8

Q ss_pred             CEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCC
Q 044830          118 VALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLR  197 (801)
Q Consensus       118 ~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  197 (801)
                      ++||+++|.  +.    .+|..+.  ++|++|++++|.+.+..|..|..+  ++|++|+|++|.+++..|..+.++++|+
T Consensus         3 ~~l~ls~n~--l~----~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNG--LI----HVPKDLS--QKTTILNISQNYISELWTSDILSL--SKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSC--CS----SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTC--TTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCC--cc----ccccccc--ccccEEECCCCcccccChhhcccc--ccccEEecCCCccCCcChHHhhcccCCC
Confidence            467777773  22    2333222  677777777777777777777777  7777777777777776677777777777


Q ss_pred             EEeccCCCCCccCCCCCCCCCCCCEEEccCccCcc-cCcccccCCCCCCEEEcccccCcccCcccccCCCCC--CEEEcC
Q 044830          198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSG-KIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQL--TVLNLE  274 (801)
Q Consensus       198 ~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~  274 (801)
                      +|++++|.+.  .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|+++
T Consensus        73 ~L~Ls~N~l~--~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           73 YLDLSHNKLV--KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             EEECCSSCCC--EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred             EEecCCCcee--ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence            7777777443  24443 56666666666666664 345666666666666666666654   234445555  666666


Q ss_pred             CCCC--ccccCccccCCC-CCcEeeccCeeeeeeCCc-cCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCC
Q 044830          275 DNQF--SGEFPDVFGNLS-KLTRISLAHLNFTGQLPL-SAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD  350 (801)
Q Consensus       275 ~n~l--~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~  350 (801)
                      +|.+  .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|......                ..+.
T Consensus       147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----------------~~~~  210 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC----------------SYFL  210 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT----------------HHHH
T ss_pred             cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc----------------ceee
Confidence            6665  445555444433 122334444443332222 2233444444444444300000                0022


Q ss_pred             cccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCC
Q 044830          351 GRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE  430 (801)
Q Consensus       351 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~  430 (801)
                      +.+| .+..   +++|+.|++++|.+++..+....                        +....++|++|++++|.+++.
T Consensus       211 ~~~~-~l~~---l~~L~~L~l~~~~l~~~~~~~~~------------------------~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          211 SILA-KLQT---NPKLSNLTLNNIETTWNSFIRIL------------------------QLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             HHHH-GGGG---CTTCCEEEEEEEEEEHHHHHHHH------------------------HHHHTSSCSEEEEEEEEEESC
T ss_pred             cchh-hhcc---ccchhhccccccccCHHHHHHHH------------------------HHhhhCcccEEEeecccccCc
Confidence            2222 2222   45555555555544322111000                        000123677777777777777


Q ss_pred             Ccccc-----ccCCCCCEEECcCCCCcccCC-ccccCC---CCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCC
Q 044830          431 FPSSI-----CNLSTIEYLNLSNNSLSGMIP-QCLANF---DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG  501 (801)
Q Consensus       431 ~~~~l-----~~l~~L~~L~Ls~n~i~~~~~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  501 (801)
                      +|..+     ..++.|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~  338 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD  338 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence            77766     7777788888888877  344 344433   56888888888775432  12567888888888888888


Q ss_pred             CCCccccCCCCCcEEeCCCCcCCC--CcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccC
Q 044830          502 KLPPSLANCGDLEVLDVGNNKIND--AFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLL  579 (801)
Q Consensus       502 ~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  579 (801)
                      ..|..+..+++|++|++++|++.+  .+|..+..+++|++|++++|++.+.+|..   .+..+++|+.|++++|++++.+
T Consensus       339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~  415 (520)
T 2z7x_B          339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTI  415 (520)
T ss_dssp             TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGG
T ss_pred             hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCcch
Confidence            788888888888888888888876  45677888889999999999888755433   2367889999999999998766


Q ss_pred             cHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceE
Q 044830          580 PARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLL  659 (801)
Q Consensus       580 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L  659 (801)
                      |..+                                             .+.|+.|||++|+++ .+|..+..+++|+.|
T Consensus       416 ~~~l---------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          416 FRCL---------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             GGSC---------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             hhhh---------------------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            6431                                             146889999999999 788888899999999


Q ss_pred             eCcCccccccCCcc-ccCCCCCCeEeCcCCcceecCC
Q 044830          660 NFSHNILRGEIPVE-LTSLTALSVLNLSFNQLVGPIP  695 (801)
Q Consensus       660 ~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP  695 (801)
                      +|++|++++ +|.. +..+++|++|++++|++++.+|
T Consensus       450 ~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          450 NVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999994 6655 9999999999999999998776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.7e-43  Score=409.28  Aligned_cols=334  Identities=21%  Similarity=0.254  Sum_probs=224.1

Q ss_pred             CcCccCCCccCCCCCCCCEEeccCCCCCcc-----------------CCCCCC---CCCCCCEEEccCccCcccCccccc
Q 044830          180 CFLRGEFPIDIFHFPFLRQLTLSDNGLLTG-----------------NLPTSN---WSSPLRILDLSITKFSGKIPDTIG  239 (801)
Q Consensus       180 n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-----------------~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~l~  239 (801)
                      |.+++ +|..++++++|++|+|++|. +++                 .+|..+   .+++|++|+|++|.+.+.+|..++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            44554 55555566666666666663 333                 255544   577788888888887778888888


Q ss_pred             CCCCCCEEEccccc-Ccc-cCcccccCCC-------CCCEEEcCCCCCccccCc--cccCCCCCcEeeccCeeeeeeCCc
Q 044830          240 NLRDLKFLDLYVCY-FDG-QVPASLSNLK-------QLTVLNLEDNQFSGEFPD--VFGNLSKLTRISLAHLNFTGQLPL  308 (801)
Q Consensus       240 ~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~  308 (801)
                      ++++|+.|++++|. +++ .+|..+++++       +|++|++++|.+. .+|.  .++.+++|++|++++|.+. .+| 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            88888888888887 777 6776655544       8899999988888 7777  8888888999999988888 777 


Q ss_pred             cCcCCCCCCEEEcccccccccCCCCC-CCCC-CCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCC
Q 044830          309 SAFNLTQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW  386 (801)
Q Consensus       309 ~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~-L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~  386 (801)
                      .+..+++|+.|++++|.+. .+|..+ .+++ |++|++++|.++ .+|..+... ..++|+.|++++|.+++.+|... .
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip~l~-~  665 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNIS-C  665 (876)
T ss_dssp             CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT-CSSCEEEEECCSSCTTTTSSSCS-S
T ss_pred             hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc-ccCCCCEEECcCCcCCCccccch-h
Confidence            7888888999999998888 666555 7777 999999999888 777665542 13458999999998887665443 1


Q ss_pred             CcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcccc-ccCCCCCEEECcCCCCcccCCccccC----
Q 044830          387 PVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLAN----  461 (801)
Q Consensus       387 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~----  461 (801)
                      ....                     ...++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|..+..    
T Consensus       666 ~l~~---------------------~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~  722 (876)
T 4ecn_A          666 SMDD---------------------YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG  722 (876)
T ss_dssp             CTTT---------------------CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred             hhcc---------------------ccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence            1110                     01246777777777777 344443 46777888888888777 44433222    


Q ss_pred             ----CCCCCEEeCCCCcccccCCcccc--CCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC------CcCCCCcch
Q 044830          462 ----FDSLSLLDLRKNQFRGSIPQIFS--KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN------NKINDAFPY  529 (801)
Q Consensus       462 ----l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------n~i~~~~~~  529 (801)
                          +++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|+.|+|++      |++.+.+|.
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence                126666777766666 5555554  66666666666666665 566666666666666655      333444444


Q ss_pred             hccCCCCCCEEEccCCcC
Q 044830          530 WTATLPRLQVLVLRSNSF  547 (801)
Q Consensus       530 ~~~~l~~L~~L~L~~N~l  547 (801)
                      .+..+++|+.|+|++|++
T Consensus       801 ~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC
T ss_pred             HHhcCCCCCEEECCCCCC
Confidence            444444444444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.4e-40  Score=384.00  Aligned_cols=543  Identities=21%  Similarity=0.182  Sum_probs=411.5

Q ss_pred             CCCCCCCCCC----CCCccc----ceeEeCCC---------CCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCC
Q 044830           15 YPKTKSWNKD----GDCCSW----DGIICDEM---------TGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACND   77 (801)
Q Consensus        15 ~~~l~~w~~~----~~~c~w----~gv~c~~~---------~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~   77 (801)
                      ...+++|+.+    -+.|.+    ..|.|...         +..+++|||++|.+++..+.  +|..+++|++|+|++|.
T Consensus        10 ~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~   87 (635)
T 4g8a_A           10 DDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCE   87 (635)
T ss_dssp             ---------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCC
T ss_pred             cchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCc
Confidence            3456666542    134654    35789642         24789999999999865545  89999999999999999


Q ss_pred             CCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCC
Q 044830           78 FNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMF  157 (801)
Q Consensus        78 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  157 (801)
                      |+.. .+..|.++++|++|+|++|++++..+..|.++++|++|++++|.  +.   ...+..++++++|++|++++|.+.
T Consensus        88 i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~--l~---~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A           88 IQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--LA---SLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             CCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC--CC---CSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc--CC---CCChhhhhcCcccCeeccccCccc
Confidence            9875 45679999999999999999998877889999999999999993  32   222345789999999999999997


Q ss_pred             CC-CchhhhccCCCCccEEEccCCcCccCCCccCCCCCC----CCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcc
Q 044830          158 SV-VPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF----LRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSG  232 (801)
Q Consensus       158 ~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  232 (801)
                      .. .|..+..+  ++|++|++++|.+++..+..+..+.+    +..++++.|.+. ...+.......++.+++++|....
T Consensus       162 ~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~~~~~~~l~l~~n~~~~  238 (635)
T 4g8a_A          162 SFKLPEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSL  238 (635)
T ss_dssp             CCCCCGGGGGC--TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSSH
T ss_pred             cCCCchhhccc--hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccccchhhhhhhhhcccccc
Confidence            64 57888999  99999999999999888877765544    347888888443 223333455567888998886653


Q ss_pred             c-CcccccCCCCCCEEEcccccCc------ccCcccccCCCCCCEEEcCCCCCc---cccCccccCCCCCcEeeccCeee
Q 044830          233 K-IPDTIGNLRDLKFLDLYVCYFD------GQVPASLSNLKQLTVLNLEDNQFS---GEFPDVFGNLSKLTRISLAHLNF  302 (801)
Q Consensus       233 ~-~~~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l  302 (801)
                      . .+..+..+..++...+..+...      ......+..+..+...++..+...   ...+..+..+.+++.+++.++.+
T Consensus       239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (635)
T 4g8a_A          239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI  318 (635)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred             cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence            3 3455777888887776554332      223344455556666665544332   22344566778899999999888


Q ss_pred             eeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccc
Q 044830          303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ  382 (801)
Q Consensus       303 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~  382 (801)
                      ....  .+.....|+.|++.+|.+.+..+.  .+..|+.+++..|.+....+  ..   .+++|+.|++++|.+......
T Consensus       319 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~l~l~~n~~~~~~~--~~---~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          319 ERVK--DFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFS--EV---DLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             EECG--GGGSCCCCSEEEEESCEESSCCCC--BCTTCCEEEEESCCSCCBCC--CC---BCTTCCEEECCSSCCBEEEEC
T ss_pred             cccc--ccccchhhhhhhcccccccCcCcc--cchhhhhcccccccCCCCcc--cc---cccccccchhhcccccccccc
Confidence            7543  355678899999999988754332  46778999999888764322  22   378999999999987632211


Q ss_pred             cCCCCcccccceeeeEEEecCCCCCCCCCC--ccccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccc
Q 044830          383 LDQWPVERISSVELRHLDVQSNLLQRLPFI--LSSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCL  459 (801)
Q Consensus       383 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l  459 (801)
                          +.......+++.+++..+.....+..  .+++|+.+++..+......+ ..+..++.++.++++.|.+.+..+..+
T Consensus       390 ----~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          390 ----SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             ----CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ----ccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence                11111223788899988877665533  37899999999988776544 467889999999999999999999999


Q ss_pred             cCCCCCCEEeCCCCcc-cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCC
Q 044830          460 ANFDSLSLLDLRKNQF-RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ  538 (801)
Q Consensus       460 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  538 (801)
                      ..++.|++|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            9999999999999975 446788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCC-CCCcEEEccCCcCCccCcHHHHh
Q 044830          539 VLVLRSNSFHGPIYNNVPSIKRPF-PELRIIDISRNGFTGLLPARYFQ  585 (801)
Q Consensus       539 ~L~L~~N~l~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~~p~~~~~  585 (801)
                      +|+|++|++++..+..+    ..+ ++|++|+|++|++...-....|.
T Consensus       546 ~L~Ls~N~l~~~~~~~l----~~l~~~L~~L~L~~Np~~C~C~~~~~~  589 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQEL----QHFPSSLAFLNLTQNDFACTCEHQSFL  589 (635)
T ss_dssp             EEECTTSCCCBCCSSCT----TCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             EEECCCCcCCCCCHHHH----HhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence            99999999999887766    566 68999999999998765544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.3e-41  Score=384.53  Aligned_cols=417  Identities=20%  Similarity=0.229  Sum_probs=265.5

Q ss_pred             CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccc-cCccccCCCCCcE
Q 044830          216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTR  294 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~  294 (801)
                      .+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..  .+++|++|++++|.+.+. .|..|+++++|++
T Consensus        74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~  150 (562)
T 3a79_B           74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF  150 (562)
T ss_dssp             TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred             cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence            4444444444444444444444555555555555555554 23333  455555555555555442 2345555555555


Q ss_pred             eeccCeeeeeeCCccCcCCCCC--CEEEcccccc--cccCCCCC-CCC-CCCEEEccCCcCCcccchhhcCCCCCCCccE
Q 044830          295 ISLAHLNFTGQLPLSAFNLTQL--SLLELSRNQF--VGQLPCHA-SCL-PLSHLKLGGNFLDGRIPSWLFNLSTSENLVE  368 (801)
Q Consensus       295 L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~~--~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~  368 (801)
                      |++++|.+.+.   .+..+++|  ++|++++|.+  ++..+..+ .+. ..-.+++++|.+.+.++.....  .+++|+.
T Consensus       151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~--~l~~L~~  225 (562)
T 3a79_B          151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN--ALGHLQL  225 (562)
T ss_dssp             EEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEES--SEEEEEE
T ss_pred             EecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccc--ccceEEE
Confidence            55555554431   22333333  5555555555  43333333 111 1113455555555444433221  2455666


Q ss_pred             EEccCCCc-----cccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCcccc-----cc
Q 044830          369 LDLSNNKL-----TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSI-----CN  437 (801)
Q Consensus       369 L~Ls~n~l-----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l-----~~  437 (801)
                      +++++|..     .+.++..  .....+....+..++++++.+.+.+. ...++|++|++++|.+++.+|..+     ..
T Consensus       226 L~l~~n~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~  303 (562)
T 3a79_B          226 SNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA  303 (562)
T ss_dssp             EEEECCSTTHHHHHHHHHHH--HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred             ecccccccccchHHHHHHHH--hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhccccc
Confidence            66666531     1111111  11111111122222333222222221 113489999999999998888877     66


Q ss_pred             CCCCCEEECcCCCCcccCC-ccccC---CCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCC
Q 044830          438 LSTIEYLNLSNNSLSGMIP-QCLAN---FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDL  513 (801)
Q Consensus       438 l~~L~~L~Ls~n~i~~~~~-~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  513 (801)
                      ++.|+.++++.+.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|.+++..|..+.++++|
T Consensus       304 L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  379 (562)
T 3a79_B          304 LKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL  379 (562)
T ss_dssp             CCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred             chheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC
Confidence            77777777777776  344 22222   257999999999886332  12678999999999999999899999999999


Q ss_pred             cEEeCCCCcCCCC--cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhh
Q 044830          514 EVLDVGNNKINDA--FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM  591 (801)
Q Consensus       514 ~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~  591 (801)
                      ++|++++|++.+.  .|..+..+++|++|++++|++.+.++..   .+..+++|+.|++++|++++.+|..+        
T Consensus       380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l--------  448 (562)
T 3a79_B          380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCL--------  448 (562)
T ss_dssp             CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSC--------
T ss_pred             CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhh--------
Confidence            9999999999874  3567899999999999999999855543   23678999999999999987665321        


Q ss_pred             ccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCC
Q 044830          592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP  671 (801)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  671 (801)
                                                           .+.|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|
T Consensus       449 -------------------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~  489 (562)
T 3a79_B          449 -------------------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP  489 (562)
T ss_dssp             -------------------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred             -------------------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence                                                 146899999999999 67887889999999999999999 566


Q ss_pred             cc-ccCCCCCCeEeCcCCcceecCCC
Q 044830          672 VE-LTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       672 ~~-l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      .. +..+++|+.|++++|++.|.+|.
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             HHHHhcCCCCCEEEecCCCcCCCcch
Confidence            65 99999999999999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-40  Score=379.25  Aligned_cols=464  Identities=18%  Similarity=0.176  Sum_probs=323.1

Q ss_pred             EEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeC
Q 044830           43 IGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL  122 (801)
Q Consensus        43 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L  122 (801)
                      +.+|++++++++ +|.  .+.  ++|++|+|++|.+++. .+..|+.+++|++|+|++|.+++..|..|.++++|++|++
T Consensus        34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            678888888874 554  333  7888888888888765 4567888888888888888888877888888888888888


Q ss_pred             CCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccC-CCccCCCCCCCCEEec
Q 044830          123 SSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGE-FPIDIFHFPFLRQLTL  201 (801)
Q Consensus       123 s~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L  201 (801)
                      ++|.                             +.. +|..  .+  ++|++|++++|.+++. +|..++++++|++|++
T Consensus       108 s~N~-----------------------------l~~-lp~~--~l--~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L  153 (562)
T 3a79_B          108 SHNR-----------------------------LQN-ISCC--PM--ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL  153 (562)
T ss_dssp             TTSC-----------------------------CCE-ECSC--CC--TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred             CCCc-----------------------------CCc-cCcc--cc--ccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence            8872                             111 1111  34  8899999999998873 4678889999999999


Q ss_pred             cCCCCCccCCCCCCCCCCC--CEEEccCccC--cccCcccccCCC--CCCEEEcccccCcccCcc-cccCCCCCCEEEcC
Q 044830          202 SDNGLLTGNLPTSNWSSPL--RILDLSITKF--SGKIPDTIGNLR--DLKFLDLYVCYFDGQVPA-SLSNLKQLTVLNLE  274 (801)
Q Consensus       202 s~n~~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~  274 (801)
                      ++|.+....   +..+++|  ++|++++|.+  ++..|..+..+.  .+ .++++.|.+.+.++. .+..+++|+.++++
T Consensus       154 ~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~  229 (562)
T 3a79_B          154 SAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIK  229 (562)
T ss_dssp             ECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred             CCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccc
Confidence            998553321   2234444  8888888887  667777776654  22 456677766654443 34566777777777


Q ss_pred             CCCCc----cccCccccCCCCCcEeeccCeeeeeeCCcc---CcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCC
Q 044830          275 DNQFS----GEFPDVFGNLSKLTRISLAHLNFTGQLPLS---AFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN  347 (801)
Q Consensus       275 ~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n  347 (801)
                      +|...    ......+..+++|+.+++.++.+.+.....   ....++|++|++++|.+++.+|.               
T Consensus       230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~---------------  294 (562)
T 3a79_B          230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR---------------  294 (562)
T ss_dssp             CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC---------------
T ss_pred             ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc---------------
Confidence            76421    011234566667777777666655321100   01223566666666665554443               


Q ss_pred             cCCcccchhhcCC--CCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecC
Q 044830          348 FLDGRIPSWLFNL--STSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSD  424 (801)
Q Consensus       348 ~l~~~~~~~~~~l--~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~  424 (801)
                              .++..  ..++.|+.+++..+.+  .+|...  ....+....++.|++++|.+..... ..+++|++|++++
T Consensus       295 --------~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~  362 (562)
T 3a79_B          295 --------EEFTYSETALKSLMIEHVKNQVF--LFSKEA--LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ  362 (562)
T ss_dssp             --------CCCCCCSCSCCEEEEEEEEECCC--SSCHHH--HHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred             --------hhhhcccccchheehhhccccee--ecChhh--hhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence                    33111  1133333334433333  111000  0000011146666666666655554 4578999999999


Q ss_pred             CCCCCCCccccccCCCCCEEECcCCCCccc--CCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccEEECCCCcCCC
Q 044830          425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEG  501 (801)
Q Consensus       425 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  501 (801)
                      |.+++..|..+..+++|++|++++|++++.  +|..+.++++|++|++++|.+++.+| ..+..+++|++|++++|++++
T Consensus       363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            999998999999999999999999999963  35678999999999999999998555 458889999999999999988


Q ss_pred             CCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcH
Q 044830          502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPA  581 (801)
Q Consensus       502 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~  581 (801)
                      ..|..+.  ++|++|++++|+++. +|..+..+++|++|++++|++++ +|..   .+..+++|+.|++++|++.+..|.
T Consensus       443 ~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~---~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          443 SVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDG---VFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTT---STTTCTTCCCEECCSCCBCCCHHH
T ss_pred             chhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHH---HHhcCCCCCEEEecCCCcCCCcch
Confidence            7776554  799999999999974 56666699999999999999985 3333   247899999999999999988886


Q ss_pred             HHH
Q 044830          582 RYF  584 (801)
Q Consensus       582 ~~~  584 (801)
                      ..+
T Consensus       516 ~~~  518 (562)
T 3a79_B          516 IRY  518 (562)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.4e-38  Score=350.51  Aligned_cols=365  Identities=21%  Similarity=0.228  Sum_probs=266.6

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCC-CCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEE
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNL-PTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFL  247 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  247 (801)
                      +++++|+|++|.+++..|..+.++++|++|++++|.+ .+.+ +..+ .+++|++|++++|.+++..|..++++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            6788888888888877777888888888888888843 3233 2223 77888888888888887778888888888888


Q ss_pred             EcccccCcccCccc--ccCCCCCCEEEcCCCCCccccCcc-ccCCCCCcEeeccCeeeeeeCCccCcCC--CCCCEEEcc
Q 044830          248 DLYVCYFDGQVPAS--LSNLKQLTVLNLEDNQFSGEFPDV-FGNLSKLTRISLAHLNFTGQLPLSAFNL--TQLSLLELS  322 (801)
Q Consensus       248 ~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~  322 (801)
                      ++++|.+++..+..  +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+  .+|+.|+++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            88888887655544  788888888888888888776765 7788888888888888887777776654  677888888


Q ss_pred             cccccccCCCC---------CCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccc
Q 044830          323 RNQFVGQLPCH---------ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS  393 (801)
Q Consensus       323 ~n~~~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  393 (801)
                      +|.+.+..+..         +.+++|++|++++|.+.+.+|..+......++|+.|++++|...+....           
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------  257 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-----------  257 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----------
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----------
Confidence            88777544332         1345677777777777766666665543346666666666654432111           


Q ss_pred             eeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccc--cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC
Q 044830          394 VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC--NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR  471 (801)
Q Consensus       394 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  471 (801)
                                                    .+.+.+..+..+.  ..++|++|++++|.+++..|..+..+++|++|+++
T Consensus       258 ------------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  307 (455)
T 3v47_A          258 ------------------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA  307 (455)
T ss_dssp             ------------------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred             ------------------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence                                          1111111112222  23578888888888887777778888888888888


Q ss_pred             CCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830          472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI  551 (801)
Q Consensus       472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  551 (801)
                      +|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++++|++.+..|..+..+++|++|++++|++++..
T Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence            88888777777888888888888888887777778888888888888888888887888888888888888888887644


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830          552 YNNVPSIKRPFPELRIIDISRNGFTGLLP  580 (801)
Q Consensus       552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  580 (801)
                      +..+    ..+++|++|++++|++++.+|
T Consensus       388 ~~~~----~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          388 DGIF----DRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTT----TTCTTCCEEECCSSCBCCCTT
T ss_pred             HhHh----ccCCcccEEEccCCCcccCCC
Confidence            4333    678899999999999998888

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.2e-39  Score=354.30  Aligned_cols=403  Identities=22%  Similarity=0.251  Sum_probs=219.0

Q ss_pred             CCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCE
Q 044830          143 LTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI  222 (801)
Q Consensus       143 l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~  222 (801)
                      .++|+.|++++|.+ +.+|..++++  ++|++|++++|.+.+.+|..++++++|+.+++.+|.           ..++++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L--~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENV--KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHE   75 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSE
T ss_pred             cccchhhhcccCch-hhCChhHhcc--cchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCE
Confidence            45666677777776 6677777777  778888888888777778877777777666655551           134666


Q ss_pred             EEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeee
Q 044830          223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF  302 (801)
Q Consensus       223 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  302 (801)
                      |++++|.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|.+.+. |..   .++|++|++++|.+
T Consensus        76 L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           76 LELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQL  143 (454)
T ss_dssp             EECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCC
T ss_pred             EEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCC
Confidence            6666666663 3331   2567777777777765 4432   36677777777776642 221   15677777777777


Q ss_pred             eeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccc
Q 044830          303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ  382 (801)
Q Consensus       303 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~  382 (801)
                      .+ +| .++++++|++|++++|.+++ +|..  ..+|++|++++|.+++ +| .+..   +++|++|++++|.+++ +|.
T Consensus       144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~~~---l~~L~~L~l~~N~l~~-l~~  212 (454)
T 1jl5_A          144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEE-LP-ELQN---LPFLTAIYADNNSLKK-LPD  212 (454)
T ss_dssp             SS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CC-CCTT---CTTCCEEECCSSCCSS-CCC
T ss_pred             CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCc-Cc-cccC---CCCCCEEECCCCcCCc-CCC
Confidence            64 55 46777777777777777764 3332  2467777777777764 44 2333   6777777777776653 221


Q ss_pred             cCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCC
Q 044830          383 LDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANF  462 (801)
Q Consensus       383 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l  462 (801)
                      .                              .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|..   +
T Consensus       213 ~------------------------------~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~  256 (454)
T 1jl5_A          213 L------------------------------PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---P  256 (454)
T ss_dssp             C------------------------------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---C
T ss_pred             C------------------------------cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---c
Confidence            1                              135667777777766 4553 6677777777777777764 3332   3


Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCC-CCCCEEE
Q 044830          463 DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL-PRLQVLV  541 (801)
Q Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~  541 (801)
                      ++|++|++++|++++ +|..   .++|++|++++|++++. |.   -.++|+.|++++|++.+.     ..+ ++|++|+
T Consensus       257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~  323 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELN  323 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEE
T ss_pred             cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEE
Confidence            577777777777764 4432   35677777777777652 11   125677777777777652     122 4777777


Q ss_pred             ccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccc
Q 044830          542 LRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGV  621 (801)
Q Consensus       542 L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (801)
                      +++|++.+ +|.       .+++|+.|++++|+++ .+|. .                                      
T Consensus       324 Ls~N~l~~-lp~-------~~~~L~~L~L~~N~l~-~lp~-~--------------------------------------  355 (454)
T 1jl5_A          324 VSNNKLIE-LPA-------LPPRLERLIASFNHLA-EVPE-L--------------------------------------  355 (454)
T ss_dssp             CCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC-C--------------------------------------
T ss_pred             CCCCcccc-ccc-------cCCcCCEEECCCCccc-cccc-h--------------------------------------
Confidence            77777765 221       2467777777777776 3442 0                                      


Q ss_pred             hhhhhhhcccceEEEccCCeeee--eccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee--cCCCC
Q 044830          622 DLEMERVLNIFTTIDLSNNRFEG--MIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG--PIPQG  697 (801)
Q Consensus       622 ~~~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~iP~~  697 (801)
                             ++.|++||+++|++++  .+|..++++        +.|.+.|.+|..   +++|++|++++|+++|  .||..
T Consensus       356 -------l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          356 -------PQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             -------CTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------------------------------
T ss_pred             -------hhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence                   2456777777777777  566655433        346666666653   4677788888888877  77754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-37  Score=348.23  Aligned_cols=392  Identities=20%  Similarity=0.204  Sum_probs=237.0

Q ss_pred             EEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccC-cccccCCCCCCEEEcCCC
Q 044830          198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV-PASLSNLKQLTVLNLEDN  276 (801)
Q Consensus       198 ~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n  276 (801)
                      .++.+++.+.  .+|.  -.++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus        14 ~~~c~~~~l~--~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLH--QVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCS--SCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcc--cCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            4555555322  2333  2356777777777777666667777777777777777765433 455677777777777777


Q ss_pred             CCccccCccccCCCCCcEeeccCeeeeeeCCcc--CcCCCCCCEEEcccccccccCCCC-C-CCCCCCEEEccCCcCCcc
Q 044830          277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS--AFNLTQLSLLELSRNQFVGQLPCH-A-SCLPLSHLKLGGNFLDGR  352 (801)
Q Consensus       277 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~L~~n~l~~~  352 (801)
                      .+.+..|..|+.+++|++|++++|.+.+..+..  +..+++|++|++++|.+++..|.. + .+++|++|++++|.+.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            777666667777777777777777766544433  666667777777776666554543 2 555566666666665555


Q ss_pred             cchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc
Q 044830          353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP  432 (801)
Q Consensus       353 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~  432 (801)
                      .+..+..+. ..+|+.|++++|.+.                              +.+.....             ....
T Consensus       170 ~~~~l~~l~-~~~L~~L~l~~n~l~------------------------------~~~~~~~~-------------~~~~  205 (455)
T 3v47_A          170 CEEDLLNFQ-GKHFTLLRLSSITLQ------------------------------DMNEYWLG-------------WEKC  205 (455)
T ss_dssp             CTTTSGGGT-TCEEEEEECTTCBCT------------------------------TCSTTCTT-------------HHHH
T ss_pred             Chhhhhccc-cccccccccccCccc------------------------------ccchhhcc-------------cccc
Confidence            444443321 134444444444433                              22211100             0000


Q ss_pred             cccccCCCCCEEECcCCCCcccCCccccCC---CCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCcccc-
Q 044830          433 SSICNLSTIEYLNLSNNSLSGMIPQCLANF---DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLA-  508 (801)
Q Consensus       433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-  508 (801)
                      ..+..+++|++|++++|.+++..|..+...   ++|+.|++++|...+...              ..+.+.+..+..+. 
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~  271 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKG  271 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGG
T ss_pred             ccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccccccc
Confidence            011123344444444444444333333221   344444444443332110              01111111111111 


Q ss_pred             -CCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhh
Q 044830          509 -NCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL  587 (801)
Q Consensus       509 -~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l  587 (801)
                       ..++|+.|++++|++.+..|..+..+++|++|++++|++.+..+..+    ..+++|++|+|++|++++..|.. +.  
T Consensus       272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~-~~--  344 (455)
T 3v47_A          272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF----WGLTHLLKLNLSQNFLGSIDSRM-FE--  344 (455)
T ss_dssp             GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGG-GT--
T ss_pred             ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh----cCcccCCEEECCCCccCCcChhH-hc--
Confidence             22456666666666666666666666677777777776666555444    66778888888888887655533 22  


Q ss_pred             hhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCcccc
Q 044830          588 KAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR  667 (801)
Q Consensus       588 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  667 (801)
                                                              .++.|++|||++|++++..|..|+.+++|+.|+|++|+++
T Consensus       345 ----------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          345 ----------------------------------------NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             ----------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ----------------------------------------CcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence                                                    2456899999999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCeEeCcCCcceecCCCCC
Q 044830          668 GEIPVELTSLTALSVLNLSFNQLVGPIPQGK  698 (801)
Q Consensus       668 ~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  698 (801)
                      +..+..+..+++|++|++++|+++|.+|.-.
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             cCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            8777788999999999999999999999643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8.2e-38  Score=345.85  Aligned_cols=384  Identities=23%  Similarity=0.252  Sum_probs=224.2

Q ss_pred             CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCC-------------CCEEEcCCCCCcccc
Q 044830          216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ-------------LTVLNLEDNQFSGEF  282 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-------------L~~L~L~~n~l~~~~  282 (801)
                      ..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++             +++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            445677777777777 567777777777777777777777777777776665             4888888888875 3


Q ss_pred             CccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCC
Q 044830          283 PDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLST  362 (801)
Q Consensus       283 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  362 (801)
                      |..   .++|++|++++|.+.+ +|..   +++|++|++++|.+++. +..  .++|++|++++|.+++ +| .+..   
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~--~~~L~~L~L~~n~l~~-lp-~~~~---  151 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNNQLEK-LP-ELQN---  151 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSSCCSS-CC-CCTT---
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC--CCCCCEEECcCCCCCC-Cc-ccCC---
Confidence            432   3678888888888886 5543   47888888888888752 221  2678888888888885 66 3444   


Q ss_pred             CCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCC
Q 044830          363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTI  441 (801)
Q Consensus       363 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  441 (801)
                      +++|++|++++|++++ +|...    .     +++.|++++|.+++++. ..+++|++|++++|.+++ +|..   .++|
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~~----~-----~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L  217 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDLP----P-----SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSL  217 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC----T-----TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTC
T ss_pred             CCCCCEEECCCCcCcc-cCCCc----c-----cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcc
Confidence            7888888888888874 33322    1     67777777777766542 236777777777777774 3332   2467


Q ss_pred             CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830          442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      ++|++++|.++ .+|. ++.+++|++|++++|++++ +|..   +++|++|++++|++++ +|..   +++|++|++++|
T Consensus       218 ~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N  287 (454)
T 1jl5_A          218 ESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSEN  287 (454)
T ss_dssp             CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             cEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCC
Confidence            77777777777 4553 6777777777777777764 3432   3677777777777775 4432   367777777777


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCccc
Q 044830          522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLD  601 (801)
Q Consensus       522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~  601 (801)
                      ++.+.. .   ..++|+.|++++|++.+..        ...++|+.|++++|++++ +|..                   
T Consensus       288 ~l~~l~-~---~~~~L~~L~l~~N~l~~i~--------~~~~~L~~L~Ls~N~l~~-lp~~-------------------  335 (454)
T 1jl5_A          288 IFSGLS-E---LPPNLYYLNASSNEIRSLC--------DLPPSLEELNVSNNKLIE-LPAL-------------------  335 (454)
T ss_dssp             CCSEES-C---CCTTCCEEECCSSCCSEEC--------CCCTTCCEEECCSSCCSC-CCCC-------------------
T ss_pred             ccCccc-C---cCCcCCEEECcCCcCCccc--------CCcCcCCEEECCCCcccc-cccc-------------------
Confidence            776521 1   1256777777777776521        112467777777777764 4421                   


Q ss_pred             ccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccc--cCCccccCCCC
Q 044830          602 YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG--EIPVELTSLTA  679 (801)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~  679 (801)
                                                 ++.|+.||+++|+++ .+|.   .+++|+.|++++|++++  .+|.++..   
T Consensus       336 ---------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~---  381 (454)
T 1jl5_A          336 ---------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED---  381 (454)
T ss_dssp             ---------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE---
T ss_pred             ---------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh---
Confidence                                       235677788888777 3554   36777888888888777  56655442   


Q ss_pred             CCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCC
Q 044830          680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLG  713 (801)
Q Consensus       680 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~  713 (801)
                           ++.|++.|.+|..  +..+....+.+|+.
T Consensus       382 -----L~~n~~~~~i~~~--~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          382 -----LRMNSHLAEVPEL--PQNLKQLHVETNPL  408 (454)
T ss_dssp             -----EECCC------------------------
T ss_pred             -----hhhcccccccccc--cCcCCEEECCCCcC
Confidence                 3456777777753  34445555566643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.9e-36  Score=329.83  Aligned_cols=364  Identities=19%  Similarity=0.177  Sum_probs=212.9

Q ss_pred             ccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCC
Q 044830          108 PSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFP  187 (801)
Q Consensus       108 p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~  187 (801)
                      +..++++++|++|++++|.  +.    .+| .+..+++|++|++++|.+.+. +  +..+  ++|++|++++|.+++. +
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~--l~----~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l--~~L~~L~Ls~N~l~~~-~  101 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSS--IT----DMT-GIEKLTGLTKLICTSNNITTL-D--LSQN--TNLTYLACDSNKLTNL-D  101 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSC--CC----CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTC--TTCSEEECCSSCCSCC-C
T ss_pred             ccChhHcCCCCEEEccCCC--cc----cCh-hhcccCCCCEEEccCCcCCeE-c--cccC--CCCCEEECcCCCCcee-e
Confidence            3455666666666666662  21    112 345555555555555555543 1  4444  5555555555555542 1


Q ss_pred             ccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCC
Q 044830          188 IDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ  267 (801)
Q Consensus       188 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  267 (801)
                        ++++++|++|++++|                        .+++ ++  ++.+++|++|++++|.+++.   .++.+++
T Consensus       102 --~~~l~~L~~L~L~~N------------------------~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~  149 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTN------------------------KLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQ  149 (457)
T ss_dssp             --CTTCTTCCEEECCSS------------------------CCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTT
T ss_pred             --cCCCCcCCEEECCCC------------------------cCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCc
Confidence              444555555555555                        4442 22  44444444444444444432   1444445


Q ss_pred             CCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCC
Q 044830          268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN  347 (801)
Q Consensus       268 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n  347 (801)
                      |++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|++|++++|.+++.  ....+++|++|++++|
T Consensus       150 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS
T ss_pred             CCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC
Confidence            555555554333222  24444555555555555443 22  44445555555555555432  1124455555555555


Q ss_pred             cCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCC
Q 044830          348 FLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL  427 (801)
Q Consensus       348 ~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l  427 (801)
                      ++++ +|  +..   +++|+.|++++|++++..+.    .+.     .++.|+++.|           +|+.|++++|.+
T Consensus       223 ~l~~-ip--~~~---l~~L~~L~l~~N~l~~~~~~----~l~-----~L~~L~l~~n-----------~L~~L~l~~n~~  276 (457)
T 3bz5_A          223 KLTE-ID--VTP---LTQLTYFDCSVNPLTELDVS----TLS-----KLTTLHCIQT-----------DLLEIDLTHNTQ  276 (457)
T ss_dssp             CCSC-CC--CTT---CTTCSEEECCSSCCSCCCCT----TCT-----TCCEEECTTC-----------CCSCCCCTTCTT
T ss_pred             cccc-cC--ccc---cCCCCEEEeeCCcCCCcCHH----HCC-----CCCEEeccCC-----------CCCEEECCCCcc
Confidence            5554 33  222   45556666666655543211    111     4555555543           456677788877


Q ss_pred             CCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccc
Q 044830          428 TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL  507 (801)
Q Consensus       428 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  507 (801)
                      .+.+|  ++.+++|+.|++++|...+.+|.   ...+|+.|++++|             ++|++|++++|++++. +  +
T Consensus       277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l  335 (457)
T 3bz5_A          277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--V  335 (457)
T ss_dssp             CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--C
T ss_pred             CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--c
Confidence            77666  46788899999999987777664   3456666666555             6899999999999974 3  8


Q ss_pred             cCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhh
Q 044830          508 ANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL  587 (801)
Q Consensus       508 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l  587 (801)
                      .++++|+.|++++|++++        ++.|..|.+++|.+.|.         ..+..|..+++++|+++|.+|..++...
T Consensus       336 ~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~---------~~~~~l~~l~l~~N~l~g~ip~~~~~~~  398 (457)
T 3bz5_A          336 SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE---------GQTITMPKETLTNNSLTIAVSPDLLDQF  398 (457)
T ss_dssp             TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred             ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---------ceeeecCccccccCcEEEEcChhHhccc
Confidence            899999999999999976        25667778999998875         2456688899999999999997755433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.8e-36  Score=319.23  Aligned_cols=272  Identities=25%  Similarity=0.384  Sum_probs=195.5

Q ss_pred             CCCCCCCCCCCcc--cceeEeCCCC--CcEEEEEcCCCCCCc--ccCCCcccccCCCCCeeeCCC-CCCCCCcccccccC
Q 044830           17 KTKSWNKDGDCCS--WDGIICDEMT--GHVIGLDLSSSWLLG--TLHPNSTLFLLHHLQKLNLAC-NDFNGTKISSNFGQ   89 (801)
Q Consensus        17 ~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~   89 (801)
                      .+++|+.+.+||.  |+||.|+..+  ++|++|+|+++.+.|  .+++  .+..+++|++|+|++ |.+.+. +|..|+.
T Consensus        23 ~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~   99 (313)
T 1ogq_A           23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAK   99 (313)
T ss_dssp             GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGG
T ss_pred             cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhc
Confidence            6889988889999  9999998665  899999999999998  7777  889999999999995 888766 7878899


Q ss_pred             CCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCC
Q 044830           90 FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS  169 (801)
Q Consensus        90 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~  169 (801)
                      +++|++|+|++|.+++.+|..|.++++|++|++++|.  +.   +.+|..+..+++|++|++++|.+.+.+|..+..+  
T Consensus       100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~--l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--  172 (313)
T 1ogq_A          100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--LS---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF--  172 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--EE---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC--
T ss_pred             CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc--cC---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh--
Confidence            9999999999999988888888888888888888772  22   2334444455555555555554444444444444  


Q ss_pred             C-CccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEE
Q 044830          170 A-SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLD  248 (801)
Q Consensus       170 ~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  248 (801)
                      + +|++|++++|.+++.+|..+.                        .++ |++|++++|.+++..|..+..+++|+.|+
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFA------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGG------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             hhcCcEEECcCCeeeccCChHHh------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence            3 344444444444333333322                        222 66666666666666677777777777777


Q ss_pred             cccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccc
Q 044830          249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQ  325 (801)
Q Consensus       249 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  325 (801)
                      +++|.+++..|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus       228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            777777765554 667777777777777777777777777777777777777777777765 667777777777776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-34  Score=320.94  Aligned_cols=345  Identities=25%  Similarity=0.355  Sum_probs=196.0

Q ss_pred             CCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEE
Q 044830          193 FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLN  272 (801)
Q Consensus       193 l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  272 (801)
                      +++++.|+++++.+..  ++....+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            4567777777664322  3433356666666666666654322  5666666666666666654333  55666666666


Q ss_pred             cCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcc
Q 044830          273 LEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGR  352 (801)
Q Consensus       273 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~  352 (801)
                      +++|.+.+..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.                       +.
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~-----------------------~~  170 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVT-----------------------DL  170 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCC-----------------------CC
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-Cccc-----------------------Cc
Confidence            66666554322  5555666666666665553 22 24455555555543 1111                       11


Q ss_pred             cchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc
Q 044830          353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP  432 (801)
Q Consensus       353 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~  432 (801)
                       +. +.   .+++|+.|++++|.+++                                                   .  
T Consensus       171 -~~-~~---~l~~L~~L~l~~n~l~~---------------------------------------------------~--  192 (466)
T 1o6v_A          171 -KP-LA---NLTTLERLDISSNKVSD---------------------------------------------------I--  192 (466)
T ss_dssp             -GG-GT---TCTTCCEEECCSSCCCC---------------------------------------------------C--
T ss_pred             -hh-hc---cCCCCCEEECcCCcCCC---------------------------------------------------C--
Confidence             11 22   24555555555554431                                                   1  


Q ss_pred             cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830          433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD  512 (801)
Q Consensus       433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  512 (801)
                      ..+..+++|++|++++|.+++..|  ++.+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~  266 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK  266 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence            113344444444444444443322  33444455555555544422  234445555555555555553322  555555


Q ss_pred             CcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhc
Q 044830          513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH  592 (801)
Q Consensus       513 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~  592 (801)
                      |++|++++|++.+..+  +..+++|+.|++++|++.+..+      +..+++|+.|++++|++++..|.   .       
T Consensus       267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~~---~-------  328 (466)
T 1o6v_A          267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISPV---S-------  328 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGGG---G-------
T ss_pred             CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchhh---c-------
Confidence            6666666665555433  5556666666666666554332      25667777777777777765441   1       


Q ss_pred             cCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCc
Q 044830          593 GDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPV  672 (801)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  672 (801)
                                                         .++.|+.|++++|++++.  ..++++++|+.|++++|++++..| 
T Consensus       329 -----------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  370 (466)
T 1o6v_A          329 -----------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-  370 (466)
T ss_dssp             -----------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred             -----------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence                                               135677888888888765  367888888888888888888777 


Q ss_pred             cccCCCCCCeEeCcCCccee
Q 044830          673 ELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       673 ~l~~l~~L~~L~ls~N~l~g  692 (801)
                       +..+++|+.|++++|++++
T Consensus       371 -~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          371 -LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -GTTCTTCCEEECCCEEEEC
T ss_pred             -hhcCCCCCEEeccCCcccC
Confidence             7888888888888888887

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.3e-35  Score=324.35  Aligned_cols=354  Identities=21%  Similarity=0.220  Sum_probs=219.2

Q ss_pred             CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830          216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI  295 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  295 (801)
                      .+++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++.+++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            567788888888877753 4 577778888888888877763 3  77777888888888877754 3  6777778888


Q ss_pred             eccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCC
Q 044830          296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK  375 (801)
Q Consensus       296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~  375 (801)
                      ++++|.+.+ +|  +..+++|++|++++|.+++. + ...+++|++|++++|...+.++  +.   .+++|+.|++++|+
T Consensus       112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~~--~~---~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKLD--VT---PQTQLTTLDCSFNK  181 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCCC--CT---TCTTCCEEECCSSC
T ss_pred             ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCcccccc--cc---cCCcCCEEECCCCc
Confidence            888877775 33  66777777888777777753 2 2266777777777775544442  22   35667777777776


Q ss_pred             ccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccC
Q 044830          376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI  455 (801)
Q Consensus       376 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  455 (801)
                      +++. + .  ..++     .|+.|++++|.+++.+...+++|+.|++++|++++ +|  +..+++|+.|++++|.+++..
T Consensus       182 l~~l-~-l--~~l~-----~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          182 ITEL-D-V--SQNK-----LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CCCC-C-C--TTCT-----TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ccee-c-c--ccCC-----CCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            6542 1 1  1111     44455555555444443344444444444444443 22  444444444444444444332


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC
Q 044830          456 PQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP  535 (801)
Q Consensus       456 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  535 (801)
                         +..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|.   ..+
T Consensus       250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~  307 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAA  307 (457)
T ss_dssp             ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTC
T ss_pred             ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCC
Confidence               223344444444333              23445555555554444  34556666666666655554442   223


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEE
Q 044830          536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI  615 (801)
Q Consensus       536 ~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  615 (801)
                      +|+.|++                 ..+++|+.|++++|++++. +   +.                              
T Consensus       308 ~L~~L~l-----------------~~~~~L~~L~L~~N~l~~l-~---l~------------------------------  336 (457)
T 3bz5_A          308 GITELDL-----------------SQNPKLVYLYLNNTELTEL-D---VS------------------------------  336 (457)
T ss_dssp             CCSCCCC-----------------TTCTTCCEEECTTCCCSCC-C---CT------------------------------
T ss_pred             cceEech-----------------hhcccCCEEECCCCccccc-c---cc------------------------------
Confidence            3333333                 3456788999999988863 3   11                              


Q ss_pred             EEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCC
Q 044830          616 LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP  695 (801)
Q Consensus       616 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  695 (801)
                                  .++.|+.||+++|++++        ++.|+.|++++|.++|.     ..+..|..+++++|+++|.||
T Consensus       337 ------------~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          337 ------------HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             ------------TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred             ------------cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence                        14567889999999886        24677788999999886     345678889999999999999


Q ss_pred             CC
Q 044830          696 QG  697 (801)
Q Consensus       696 ~~  697 (801)
                      ..
T Consensus       392 ~~  393 (457)
T 3bz5_A          392 PD  393 (457)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.8e-33  Score=311.47  Aligned_cols=325  Identities=26%  Similarity=0.334  Sum_probs=205.4

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL  249 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  249 (801)
                      +++++|++.++.+.. +| .+..+++|++|++++|.+..  ++.+..+++|++|++++|.+++..+  ++++++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC--chhhhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            789999999999875 44 48889999999999995433  3335589999999999999986544  999999999999


Q ss_pred             ccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccccc
Q 044830          250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ  329 (801)
Q Consensus       250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  329 (801)
                      ++|.+.+..+  +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+..  .+.++++|++|++++|.+.+.
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC
Confidence            9999986533  89999999999999998854 3 48999999999996 4555332  377889999999998887642


Q ss_pred             CCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCC
Q 044830          330 LPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL  409 (801)
Q Consensus       330 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  409 (801)
                       +....+++|++|++++|.+.+..|  +..   +++|+.|++++                                    
T Consensus       193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~---l~~L~~L~l~~------------------------------------  230 (466)
T 1o6v_A          193 -SVLAKLTNLESLIATNNQISDITP--LGI---LTNLDELSLNG------------------------------------  230 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GGG---CTTCCEEECCS------------------------------------
T ss_pred             -hhhccCCCCCEEEecCCccccccc--ccc---cCCCCEEECCC------------------------------------
Confidence             222244455555555554443322  111   33344444444                                    


Q ss_pred             CCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCc
Q 044830          410 PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL  489 (801)
Q Consensus       410 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  489 (801)
                                     |.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|
T Consensus       231 ---------------n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  289 (466)
T 1o6v_A          231 ---------------NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL  289 (466)
T ss_dssp             ---------------SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ---------------CCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence                           433321  234445555555555555554333  4555555555555555553322  4455555


Q ss_pred             cEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEE
Q 044830          490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID  569 (801)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~Ld  569 (801)
                      ++|++++|++++..+  +..+++|+.|++++|++.+..|  +..+++|+.|++++|++.+..      .+..+++|+.|+
T Consensus       290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~  359 (466)
T 1o6v_A          290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS------SLANLTNINWLS  359 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEE
T ss_pred             CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch------hhccCCCCCEEe
Confidence            555555555554322  4455555555555555555443  444555555555555554321      124455555555


Q ss_pred             ccCCcCCccCc
Q 044830          570 ISRNGFTGLLP  580 (801)
Q Consensus       570 Ls~N~l~~~~p  580 (801)
                      +++|++++..|
T Consensus       360 l~~n~l~~~~~  370 (466)
T 1o6v_A          360 AGHNQISDLTP  370 (466)
T ss_dssp             CCSSCCCBCGG
T ss_pred             CCCCccCccch
Confidence            55555554433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=319.49  Aligned_cols=216  Identities=19%  Similarity=0.177  Sum_probs=108.9

Q ss_pred             ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830          432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG  511 (801)
Q Consensus       432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  511 (801)
                      +..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|.......
T Consensus       145 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            33444445555555555555544444455555555555555555544444555555555555555555444444444444


Q ss_pred             CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhh
Q 044830          512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM  591 (801)
Q Consensus       512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~  591 (801)
                      +|+.|++++|++.+..+..+..+++|+.|+|++|++.+..+..+    ..++                            
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~----------------------------  272 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML----HELL----------------------------  272 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC----TTCT----------------------------
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc----cccc----------------------------
Confidence            55555555555554444445555555555555554443322221    2333                            


Q ss_pred             ccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCC
Q 044830          592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP  671 (801)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  671 (801)
                                                             .|+.|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus       273 ---------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          273 ---------------------------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             ---------------------------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             ---------------------------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence                                                   34555555555555555556666666666666666665555


Q ss_pred             ccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCC
Q 044830          672 VELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFA  718 (801)
Q Consensus       672 ~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  718 (801)
                      ..|..+++|+.|++++|++.+..+....+.......+.++...|+.|
T Consensus       314 ~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          314 SVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             GGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             hHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            55566666666666666665544321111112223445555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-34  Score=303.74  Aligned_cols=259  Identities=31%  Similarity=0.496  Sum_probs=238.0

Q ss_pred             ccccEEEecCCCCCC--CCccccccCCCCCEEECcC-CCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccE
Q 044830          415 SRIRFLSVSDNKLTG--EFPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA  491 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  491 (801)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            478999999999998  8899999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC-CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEc
Q 044830          492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP-RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI  570 (801)
Q Consensus       492 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdL  570 (801)
                      |++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ +|++|++++|++.+.+|..+    ..++ |+.|++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~----~~l~-L~~L~L  204 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF----ANLN-LAFVDL  204 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG----GGCC-CSEEEC
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH----hCCc-ccEEEC
Confidence            99999999999999999999999999999999989999999998 99999999999998877665    5666 999999


Q ss_pred             cCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccc
Q 044830          571 SRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV  650 (801)
Q Consensus       571 s~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l  650 (801)
                      ++|++++.+|..+ .                                          .++.|+.|+|++|++++.+|. +
T Consensus       205 s~N~l~~~~~~~~-~------------------------------------------~l~~L~~L~L~~N~l~~~~~~-~  240 (313)
T 1ogq_A          205 SRNMLEGDASVLF-G------------------------------------------SDKNTQKIHLAKNSLAFDLGK-V  240 (313)
T ss_dssp             CSSEEEECCGGGC-C------------------------------------------TTSCCSEEECCSSEECCBGGG-C
T ss_pred             cCCcccCcCCHHH-h------------------------------------------cCCCCCEEECCCCceeeecCc-c
Confidence            9999998777431 1                                          246789999999999988776 8


Q ss_pred             cccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCCCCCC
Q 044830          651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQC  723 (801)
Q Consensus       651 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c  723 (801)
                      ..+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            8999999999999999999999999999999999999999999999988999999999999999999876 46

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-32  Score=303.80  Aligned_cols=301  Identities=20%  Similarity=0.181  Sum_probs=185.1

Q ss_pred             CCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeec
Q 044830          218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISL  297 (801)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  297 (801)
                      +.+++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+....+..|..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            35666666666666555666777777777777777777666667777777777777777776555556667777777777


Q ss_pred             cCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCc
Q 044830          298 AHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL  376 (801)
Q Consensus       298 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l  376 (801)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+..+..   +++|+.|++++|.+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~i  188 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH---LHGLIVLRLRHLNI  188 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT---CTTCCEEEEESCCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc---cCCCcEEeCCCCcC
Confidence            7777776666666777777777777777666555555 5666777777776666444444444   56666666666665


Q ss_pred             cccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC
Q 044830          377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP  456 (801)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  456 (801)
                      .+..+..+                           ..+++|+.|++++|...+.+|.......+|++|++++|.+++..+
T Consensus       189 ~~~~~~~~---------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  241 (477)
T 2id5_A          189 NAIRDYSF---------------------------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY  241 (477)
T ss_dssp             CEECTTCS---------------------------CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred             cEeChhhc---------------------------ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence            53222111                           113455555555555555555444444466666666666664433


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCC
Q 044830          457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPR  536 (801)
Q Consensus       457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  536 (801)
                      ..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..+..+++
T Consensus       242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence            45556666666666666666555555666666666666666666555556666666666666666665555555555555


Q ss_pred             CCEEEccCCcCc
Q 044830          537 LQVLVLRSNSFH  548 (801)
Q Consensus       537 L~~L~L~~N~l~  548 (801)
                      |+.|++++|++.
T Consensus       322 L~~L~l~~N~l~  333 (477)
T 2id5_A          322 LETLILDSNPLA  333 (477)
T ss_dssp             CCEEECCSSCEE
T ss_pred             cCEEEccCCCcc
Confidence            555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-32  Score=294.13  Aligned_cols=315  Identities=20%  Similarity=0.180  Sum_probs=206.3

Q ss_pred             CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830          216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI  295 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  295 (801)
                      .+++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            45667777777777764444456777888888888888777666777788888888888888877777777788888888


Q ss_pred             eccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCC
Q 044830          296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN  374 (801)
Q Consensus       296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n  374 (801)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++. +  +.   .+++|+.|++++|
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~---~l~~L~~L~l~~n  196 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS---LIPSLFHANVSYN  196 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GG---GCTTCSEEECCSS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cc---cccccceeecccc
Confidence            888887774433445677888888888887776655555 677777778777777643 2  22   2667888888887


Q ss_pred             CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc
Q 044830          375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM  454 (801)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  454 (801)
                      .+++..                                ..++|+.|++++|.+... |..  ..++|+.|++++|.+++.
T Consensus       197 ~l~~~~--------------------------------~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~  241 (390)
T 3o6n_A          197 LLSTLA--------------------------------IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT  241 (390)
T ss_dssp             CCSEEE--------------------------------CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC
T ss_pred             cccccC--------------------------------CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc
Confidence            765311                                012445555555555432 221  234566666666666543


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCC
Q 044830          455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL  534 (801)
Q Consensus       455 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  534 (801)
                        ..+..+++|++|++++|.+++..|..|..+++|++|++++|++++ +|..+..+++|++|++++|++.+ +|..+..+
T Consensus       242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l  317 (390)
T 3o6n_A          242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF  317 (390)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHH
T ss_pred             --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcccccc
Confidence              345566666666666666666666666666666666666666653 34445566677777777777653 34445666


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHH
Q 044830          535 PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPAR  582 (801)
Q Consensus       535 ~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~  582 (801)
                      ++|+.|++++|++....       +..+++|+.|++++|++.+.-...
T Consensus       318 ~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N~~~~~~~~~  358 (390)
T 3o6n_A          318 DRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCNSLRA  358 (390)
T ss_dssp             TTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred             CcCCEEECCCCccceeC-------chhhccCCEEEcCCCCccchhHHH
Confidence            77777777777766431       256778888888888887543333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-31  Score=290.63  Aligned_cols=351  Identities=17%  Similarity=0.109  Sum_probs=257.1

Q ss_pred             CCCCCCCCCCCcc-cceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCE
Q 044830           17 KTKSWNKDGDCCS-WDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTH   95 (801)
Q Consensus        17 ~l~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~   95 (801)
                      .+++|..+.+||. |.++.|.....++     ...........  .-..++++++|++++|.++.. .+..|..+++|++
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~   73 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVEL   73 (390)
T ss_dssp             -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESEE-CTHHHHHCCCCSE
T ss_pred             CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhhC-ChhHhcccccCcE
Confidence            3678988888885 5555553221222     11111111112  334678999999999988664 3344788999999


Q ss_pred             EeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEE
Q 044830           96 LNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISL  175 (801)
Q Consensus        96 L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L  175 (801)
                      |+|++|.+++..+..|..+++|++|++++|.  +.   ...+..+.++++|++|++++|.+....+..|..+  ++|++|
T Consensus        74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L~~L  146 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT--PKLTTL  146 (390)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSC--CC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred             EECCCCcccccChhhccCCCCcCEEECCCCC--CC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC--CCCcEE
Confidence            9999999998888899999999999999983  33   3345567889999999999999987777777888  899999


Q ss_pred             EccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCc
Q 044830          176 SLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFD  255 (801)
Q Consensus       176 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  255 (801)
                      ++++|.+.+..+..+..+++|++|++++|.+...   ....+++|+.|++++|.+++     +...++|+.|++++|.+.
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN  218 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeee
Confidence            9999999988888899999999999999954332   22367889999999998874     234468999999999987


Q ss_pred             ccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCC
Q 044830          256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS  335 (801)
Q Consensus       256 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~  335 (801)
                      .. |..  ..++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.......
T Consensus       219 ~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (390)
T 3o6n_A          219 VV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP  293 (390)
T ss_dssp             EE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSC
T ss_pred             ec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCC
Confidence            54 332  347899999999998864  5788899999999999999988888888999999999999988864333336


Q ss_pred             CCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccc
Q 044830          336 CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSS  415 (801)
Q Consensus       336 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  415 (801)
                      +++|++|++++|.+. .+|..+..   +++|+.|++++|.++.                              .+...++
T Consensus       294 l~~L~~L~L~~n~l~-~~~~~~~~---l~~L~~L~L~~N~i~~------------------------------~~~~~~~  339 (390)
T 3o6n_A          294 IPTLKVLDLSHNHLL-HVERNQPQ---FDRLENLYLDHNSIVT------------------------------LKLSTHH  339 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCGGGHHH---HTTCSEEECCSSCCCC------------------------------CCCCTTC
T ss_pred             CCCCCEEECCCCcce-ecCccccc---cCcCCEEECCCCccce------------------------------eCchhhc
Confidence            788888888888887 55665555   5677777777777653                              2223345


Q ss_pred             cccEEEecCCCCCC
Q 044830          416 RIRFLSVSDNKLTG  429 (801)
Q Consensus       416 ~L~~L~L~~n~l~~  429 (801)
                      +|+.|++++|.+..
T Consensus       340 ~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          340 TLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCSEEECCSSCEEH
T ss_pred             cCCEEEcCCCCccc
Confidence            77777777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.7e-31  Score=305.66  Aligned_cols=316  Identities=20%  Similarity=0.183  Sum_probs=205.6

Q ss_pred             CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830          216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI  295 (801)
Q Consensus       216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  295 (801)
                      .+.+++.+++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..|..|+.+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            34566777777777765555556777888888888888777777777788888888888888877777777778888888


Q ss_pred             eccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCC
Q 044830          296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN  374 (801)
Q Consensus       296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n  374 (801)
                      ++++|.+.+..+..+.++++|++|++++|.+++..+..+ .+++|++|++++|.+++. +  +..   +++|+.|++++|
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~---l~~L~~L~l~~n  202 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSL---IPSLFHANVSYN  202 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGG---CTTCSEEECCSS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhh---hhhhhhhhcccC
Confidence            888887775544445777888888888887777666555 677777777777777643 2  222   567788888887


Q ss_pred             CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc
Q 044830          375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM  454 (801)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  454 (801)
                      .+++..                                .+.+|+.|++++|.+... +..+  .++|+.|++++|.+++.
T Consensus       203 ~l~~l~--------------------------------~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          203 LLSTLA--------------------------------IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT  247 (597)
T ss_dssp             CCSEEE--------------------------------CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC
T ss_pred             cccccc--------------------------------CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC
Confidence            765311                                012344445555444422 1111  23556666666665542


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCC
Q 044830          455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL  534 (801)
Q Consensus       455 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  534 (801)
                        ..+..+++|++|++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++.+ +|..+..+
T Consensus       248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l  323 (597)
T 3oja_B          248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF  323 (597)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHH
T ss_pred             --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccC
Confidence              445556666666666666666656666666666666666666654 34455556667777777776653 45555666


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHH
Q 044830          535 PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARY  583 (801)
Q Consensus       535 ~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~  583 (801)
                      ++|+.|+|++|++.+..       +..+++|+.|++++|++.+..+..+
T Consensus       324 ~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~~~~~~~~~~  365 (597)
T 3oja_B          324 DRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCNSLRAL  365 (597)
T ss_dssp             TTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred             CCCCEEECCCCCCCCcC-------hhhcCCCCEEEeeCCCCCChhHHHH
Confidence            77777777777766432       2567788888888888876544333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.1e-30  Score=276.65  Aligned_cols=285  Identities=22%  Similarity=0.305  Sum_probs=172.4

Q ss_pred             ccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCC
Q 044830          238 IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS  317 (801)
Q Consensus       238 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  317 (801)
                      +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+.  +.+..+++|++|++++|.+.+. +. +..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence            33344444444444444322 11 44444444444444444421  1344444444444444444422 11 44445555


Q ss_pred             EEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeee
Q 044830          318 LLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELR  397 (801)
Q Consensus       318 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~  397 (801)
                      +|++++|.....++....+++|++|++++|.+.+..+  +..   +++|+.|++++|.+.+..+                
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~---l~~L~~L~l~~n~l~~~~~----------------  194 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IAN---LTDLYSLSLNYNQIEDISP----------------  194 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGG---CTTCSEEECTTSCCCCCGG----------------
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hcc---CCCCCEEEccCCccccccc----------------
Confidence            5555555433333332244455555555555443222  222   5666666666666542211                


Q ss_pred             EEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccc
Q 044830          398 HLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG  477 (801)
Q Consensus       398 ~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  477 (801)
                                   ...+++|+.+++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++
T Consensus       195 -------------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          195 -------------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             -------------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             -------------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence                         1124567777777777765433  6777888888888888875443  7778888888888888875


Q ss_pred             cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCC
Q 044830          478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS  557 (801)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  557 (801)
                      .  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+  +  
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~--  329 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L--  329 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G--
T ss_pred             C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h--
Confidence            3  4577888888888888888754  457788888888888888888888888888888888888888887654  2  


Q ss_pred             CCCCCCCCcEEEccCCcCC
Q 044830          558 IKRPFPELRIIDISRNGFT  576 (801)
Q Consensus       558 ~~~~l~~L~~LdLs~N~l~  576 (801)
                        ..+++|+.||+++|+++
T Consensus       330 --~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 --ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             --GGCTTCSEESSSCC---
T ss_pred             --hhhhccceeehhhhccc
Confidence              67888999999988875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-30  Score=299.34  Aligned_cols=349  Identities=17%  Similarity=0.150  Sum_probs=266.6

Q ss_pred             CCCCCCCCCCCcc----cceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCC
Q 044830           17 KTKSWNKDGDCCS----WDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTK   92 (801)
Q Consensus        17 ~l~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~   92 (801)
                      .+++|..+.+||.    |.++.|+.   ++   +-......  ...  .-..+.+++.|++++|.+... .+..|..+++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~~--~~~--~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~   76 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDVY--FGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQ   76 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC---EE---CSSCCCCE--ESC--SSGGGCCCSEEEESSCEESEE-CTHHHHHCCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCc---ee---cccccccc--cCc--ccccCCCceEEEeeCCCCCCc-CHHHHccCCC
Confidence            6789988888884    66665542   11   11111111  111  233578899999999988764 3455788999


Q ss_pred             CCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCc
Q 044830           93 LTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASL  172 (801)
Q Consensus        93 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L  172 (801)
                      |++|+|++|.+++..|..|+.+++|++|+|++|.  +.   +..+..+.++++|++|++++|.+....+..|..+  ++|
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L  149 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT--PKL  149 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTC
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--CC---CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC--CCC
Confidence            9999999999998888899999999999999983  33   3445567899999999999999998877778888  999


Q ss_pred             cEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccc
Q 044830          173 ISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVC  252 (801)
Q Consensus       173 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  252 (801)
                      ++|+|++|.+++..|..+..+++|++|++++|.+...   ....+++|+.|++++|.+++     +...++|+.|++++|
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN  221 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSS
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCC
Confidence            9999999999988888899999999999999954332   12367889999999998874     344568999999999


Q ss_pred             cCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCC
Q 044830          253 YFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPC  332 (801)
Q Consensus       253 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~  332 (801)
                      .+....+. +  .++|+.|++++|.+++  +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++....
T Consensus       222 ~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  296 (597)
T 3oja_B          222 SINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY  296 (597)
T ss_dssp             CCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS
T ss_pred             cccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc
Confidence            98754332 2  3689999999999986  36788999999999999999988888899999999999999998864333


Q ss_pred             CCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCC
Q 044830          333 HASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFI  412 (801)
Q Consensus       333 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  412 (801)
                      ...+++|+.|++++|.++ .+|..+..   +++|+.|++++|.+++.                              +..
T Consensus       297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~---l~~L~~L~L~~N~l~~~------------------------------~~~  342 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLL-HVERNQPQ---FDRLENLYLDHNSIVTL------------------------------KLS  342 (597)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHHH---HTTCSEEECCSSCCCCC------------------------------CCC
T ss_pred             cccCCCCcEEECCCCCCC-ccCccccc---CCCCCEEECCCCCCCCc------------------------------Chh
Confidence            336788888888888887 56766665   67788888888776532                              223


Q ss_pred             ccccccEEEecCCCCCCC
Q 044830          413 LSSRIRFLSVSDNKLTGE  430 (801)
Q Consensus       413 ~~~~L~~L~L~~n~l~~~  430 (801)
                      .+++|+.|++++|.+.+.
T Consensus       343 ~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          343 THHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTCCCSEEECCSSCEEHH
T ss_pred             hcCCCCEEEeeCCCCCCh
Confidence            346778888888877653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.7e-30  Score=277.20  Aligned_cols=196  Identities=24%  Similarity=0.399  Sum_probs=122.7

Q ss_pred             cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCc
Q 044830          435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE  514 (801)
Q Consensus       435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  514 (801)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~  224 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN  224 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence            4444555555555555543322  4455555555555555543222  4455555555555555553322  55556666


Q ss_pred             EEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccC
Q 044830          515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGD  594 (801)
Q Consensus       515 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~  594 (801)
                      +|++++|++.+..+  +..+++|++|++++|.+.+.      ..+..+++|+.|++++|++++. |.  +          
T Consensus       225 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~-~~--~----------  283 (347)
T 4fmz_A          225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI-SV--L----------  283 (347)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC-GG--G----------
T ss_pred             EEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC-hh--h----------
Confidence            66666666655433  55666666666666665542      1235677788888888877643 21  1          


Q ss_pred             CCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccc
Q 044830          595 NDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL  674 (801)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  674 (801)
                                                      ..++.|+.|++++|++++..|..++.+++|+.|+|++|.+++..|  +
T Consensus       284 --------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~  329 (347)
T 4fmz_A          284 --------------------------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L  329 (347)
T ss_dssp             --------------------------------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred             --------------------------------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence                                            124567888999999888888888899999999999999987766  7


Q ss_pred             cCCCCCCeEeCcCCcce
Q 044830          675 TSLTALSVLNLSFNQLV  691 (801)
Q Consensus       675 ~~l~~L~~L~ls~N~l~  691 (801)
                      ..+++|++|++++|+++
T Consensus       330 ~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEESSSCC---
T ss_pred             hhhhccceeehhhhccc
Confidence            88899999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.6e-33  Score=313.20  Aligned_cols=383  Identities=20%  Similarity=0.168  Sum_probs=219.3

Q ss_pred             CCCCEEEccCccCcccCccc-ccCCCCCCEEEcccccCcc----cCcccccCCCCCCEEEcCCCCCccccCccc-cCCC-
Q 044830          218 SPLRILDLSITKFSGKIPDT-IGNLRDLKFLDLYVCYFDG----QVPASLSNLKQLTVLNLEDNQFSGEFPDVF-GNLS-  290 (801)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~-  290 (801)
                      ++|++|++++|.++...... +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45677777777776443333 6677888888888888764    345667777888888888888765444333 2344 


Q ss_pred             ---CCcEeeccCeeeee----eCCccCcCCCCCCEEEcccccccccCCCCC------CCCCCCEEEccCCcCCccc----
Q 044830          291 ---KLTRISLAHLNFTG----QLPLSAFNLTQLSLLELSRNQFVGQLPCHA------SCLPLSHLKLGGNFLDGRI----  353 (801)
Q Consensus       291 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~------~~~~L~~L~L~~n~l~~~~----  353 (801)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+      ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               58888888887763    346667777777777777777654222111      1234555555555555422    


Q ss_pred             chhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcc
Q 044830          354 PSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS  433 (801)
Q Consensus       354 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~  433 (801)
                      +..+..   +++|++|++++|.+++                                                   ..+.
T Consensus       163 ~~~l~~---~~~L~~L~L~~n~i~~---------------------------------------------------~~~~  188 (461)
T 1z7x_W          163 ASVLRA---KPDFKELTVSNNDINE---------------------------------------------------AGVR  188 (461)
T ss_dssp             HHHHHH---CTTCCEEECCSSBCHH---------------------------------------------------HHHH
T ss_pred             HHHHhh---CCCCCEEECcCCCcch---------------------------------------------------HHHH
Confidence            222222   3455555555555432                                                   2111


Q ss_pred             ccc-----cCCCCCEEECcCCCCccc----CCccccCCCCCCEEeCCCCcccccC-----CccccCCCCccEEECCCCcC
Q 044830          434 SIC-----NLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRGSI-----PQIFSKCYDLVALNLNDNEL  499 (801)
Q Consensus       434 ~l~-----~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l  499 (801)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++...     +..+..+++|++|++++|.+
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            111     133455555555555432    3444445555555555555554321     11222455666666666666


Q ss_pred             CCC----CCccccCCCCCcEEeCCCCcCCCCcchhcc-----CCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEc
Q 044830          500 EGK----LPPSLANCGDLEVLDVGNNKINDAFPYWTA-----TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI  570 (801)
Q Consensus       500 ~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdL  570 (801)
                      ++.    ++..+..+++|++|++++|++.+..+..+.     ..++|++|++++|.+++.....++..+..+++|+.||+
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence            532    344555566666666666666543333222     22567777777776665432222223355677888888


Q ss_pred             cCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeee----ec
Q 044830          571 SRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG----MI  646 (801)
Q Consensus       571 s~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~~  646 (801)
                      ++|++++..+..+...+..                                      ..+.|+.|+|++|++++    .+
T Consensus       349 s~n~i~~~~~~~l~~~l~~--------------------------------------~~~~L~~L~L~~n~i~~~~~~~l  390 (461)
T 1z7x_W          349 SNNRLEDAGVRELCQGLGQ--------------------------------------PGSVLRVLWLADCDVSDSSCSSL  390 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTS--------------------------------------TTCCCCEEECTTSCCCHHHHHHH
T ss_pred             cCCccccccHHHHHHHHcC--------------------------------------CCCceEEEECCCCCCChhhHHHH
Confidence            8887765444332221110                                      13467888888888886    67


Q ss_pred             cccccccccCceEeCcCccccccCCcc----c-cCCCCCCeEeCcCCccee
Q 044830          647 PKEVGKLSSLKLLNFSHNILRGEIPVE----L-TSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       647 p~~l~~l~~L~~L~Ls~N~l~~~ip~~----l-~~l~~L~~L~ls~N~l~g  692 (801)
                      |..+..+++|+.|+|++|++++.....    + .....|+.|++.++....
T Consensus       391 ~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            888888888888888888887541111    1 123456677766665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=9.1e-29  Score=263.21  Aligned_cols=287  Identities=17%  Similarity=0.196  Sum_probs=141.2

Q ss_pred             CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830          219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA  298 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  298 (801)
                      +++.++++++.++ .+|..+.  ++|+.|++++|.+.+..|..|.++++|++|++++|.+++..|..|+.+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4666666666665 4444432  456666666666655555555666666666666666555555555555556666655


Q ss_pred             CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccc
Q 044830          299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG  378 (801)
Q Consensus       299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  378 (801)
                      +|.+. .+|..+.  ++|++|++++|.+.+                       ..+..+..   +++|+.|++++|.++.
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-----------------------~~~~~~~~---l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRK-----------------------VPKGVFSG---LRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCC-----------------------CCSGGGSS---CSSCCEEECCSCCCBG
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCc-----------------------cCHhHhCC---CccCCEEECCCCcccc
Confidence            55555 3333322  445555555554443                       22223333   4555555555555532


Q ss_pred             --cccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC
Q 044830          379 --QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP  456 (801)
Q Consensus       379 --~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  456 (801)
                        ..+..+    .   ..+++.|++++|.+++++....++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus       162 ~~~~~~~~----~---~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          162 SGFEPGAF----D---GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             GGSCTTSS----C---SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred             CCCCcccc----c---CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence              111111    0   0033333344444433333333455555555555555544555555555555555555555555


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCC------CCCcEEeCCCCcCC--CCcc
Q 044830          457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC------GDLEVLDVGNNKIN--DAFP  528 (801)
Q Consensus       457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~L~Ls~n~i~--~~~~  528 (801)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...      ..|+.|++++|++.  +..|
T Consensus       235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            45555555555555555555 444445555555555555555554433333321      33444444444443  3333


Q ss_pred             hhccCCCCCCEEEccCC
Q 044830          529 YWTATLPRLQVLVLRSN  545 (801)
Q Consensus       529 ~~~~~l~~L~~L~L~~N  545 (801)
                      ..+..+++|+.+++++|
T Consensus       314 ~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGTTBCCSTTEEC---
T ss_pred             ccccccchhhhhhcccc
Confidence            34444444444444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.8e-28  Score=259.27  Aligned_cols=291  Identities=22%  Similarity=0.243  Sum_probs=146.3

Q ss_pred             CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830          219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA  298 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  298 (801)
                      +++.++++++.++ .+|..+.  ++|+.|++++|.+++..+..|.++++|++|++++|.+.+..|..|+.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5777777777776 4555443  567777777777766555566777777777777777766666666666667777776


Q ss_pred             CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccc
Q 044830          299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG  378 (801)
Q Consensus       299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  378 (801)
                      +|.+. .+|..+.  ++|++|++++|.+.+                       ..+..+..   +++|+.|++++|.+..
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-----------------------~~~~~~~~---l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITK-----------------------VRKSVFNG---LNQMIVVELGTNPLKS  159 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCB-----------------------BCHHHHTT---CTTCCEEECCSSCCCG
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccc-----------------------cCHhHhcC---CccccEEECCCCcCCc
Confidence            66665 3443332  455555555555543                       33333333   4555555555555432


Q ss_pred             --cccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC
Q 044830          379 --QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP  456 (801)
Q Consensus       379 --~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  456 (801)
                        ..+..+                           ..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..+
T Consensus       160 ~~~~~~~~---------------------------~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~  209 (330)
T 1xku_A          160 SGIENGAF---------------------------QGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDA  209 (330)
T ss_dssp             GGBCTTGG---------------------------GGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECT
T ss_pred             cCcChhhc---------------------------cCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCH
Confidence              111111                           012233333333333331 222211  344444444444444444


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccC---
Q 044830          457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTAT---  533 (801)
Q Consensus       457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~---  533 (801)
                      ..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..   
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence            44444445555555555444444444444455555555555544 34444445555555555555554444443322   


Q ss_pred             ---CCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCc
Q 044830          534 ---LPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG  574 (801)
Q Consensus       534 ---l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~  574 (801)
                         .+.++.|++++|++.....  .+..+..+++++.++|++|+
T Consensus       289 ~~~~~~l~~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCGGGS--CGGGGTTCCCGGGEEC----
T ss_pred             ccccccccceEeecCccccccc--CccccccccceeEEEecccC
Confidence               2455666666665542110  11123556666667766663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=6.7e-28  Score=256.33  Aligned_cols=275  Identities=20%  Similarity=0.174  Sum_probs=175.1

Q ss_pred             CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830           66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE  145 (801)
Q Consensus        66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~  145 (801)
                      +++++|+|++|.+++. .+..|+.+++|++|+|++|.+++..|..|+++++|++|++++|.  +.    .+|..+  .++
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~----~l~~~~--~~~  122 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ--LK----ELPEKM--PKT  122 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CS----BCCSSC--CTT
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc--CC----ccChhh--ccc
Confidence            6899999999999875 44579999999999999999998889999999999999999984  32    222222  268


Q ss_pred             CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc--CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEE
Q 044830          146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG--EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRIL  223 (801)
Q Consensus       146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L  223 (801)
                      |++|++++|.+.+..+..+..+  ++|++|++++|.+..  ..+..+..+++|++|++++|.+..  +|... .++|++|
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~-~~~L~~L  197 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGL-PPSLTEL  197 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTC--TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSC-CTTCSEE
T ss_pred             ccEEECCCCcccccCHhHhcCC--ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCccc-cccCCEE
Confidence            8888888888888888888888  888888888888753  556667777777877777774322  22222 2456666


Q ss_pred             EccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeee
Q 044830          224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT  303 (801)
Q Consensus       224 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  303 (801)
                      ++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            66666655555555555555555555555555544445555555555555555555 44444555555555555555554


Q ss_pred             eeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCc--ccchhhcCCCCCCCccEEEccCCC
Q 044830          304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG--RIPSWLFNLSTSENLVELDLSNNK  375 (801)
Q Consensus       304 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~~L~~L~Ls~n~  375 (801)
                      +..+..+....                 .......++.|++++|++..  ..|..+..   +.+++.+++++|+
T Consensus       277 ~~~~~~f~~~~-----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~---~~~l~~l~L~~N~  330 (330)
T 1xku_A          277 AIGSNDFCPPG-----------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRC---VYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCTTSSSCSS-----------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTT---CCCGGGEEC----
T ss_pred             ccChhhcCCcc-----------------cccccccccceEeecCcccccccCcccccc---ccceeEEEecccC
Confidence            33322221110                 00012456666666666642  22333333   6778888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.6e-32  Score=303.05  Aligned_cols=369  Identities=21%  Similarity=0.161  Sum_probs=247.5

Q ss_pred             CCCCEEEcccccCcccCccc-ccCCCCCCEEEcCCCCCccc----cCccccCCCCCcEeeccCeeeeeeCCccCc-CCCC
Q 044830          242 RDLKFLDLYVCYFDGQVPAS-LSNLKQLTVLNLEDNQFSGE----FPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ  315 (801)
Q Consensus       242 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~  315 (801)
                      ++|++|++++|.++...... +..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..+..+. .++.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45667777777665433222 55566667777766666532    344455556666666666655543222221 1220


Q ss_pred             CCEEEcccccccccCCCCCCCCCCCEEEccCCcCCc----ccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccc
Q 044830          316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG----RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERI  391 (801)
Q Consensus       316 L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  391 (801)
                                         ..++|++|++++|.++.    .++..+..   +++|++|++++|.+++..+......    
T Consensus        83 -------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~---~~~L~~L~Ls~n~i~~~~~~~l~~~----  136 (461)
T 1z7x_W           83 -------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRT---LPTLQELHLSDNLLGDAGLQLLCEG----  136 (461)
T ss_dssp             -------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTS---CTTCCEEECCSSBCHHHHHHHHHHH----
T ss_pred             -------------------CCCceeEEEccCCCCCHHHHHHHHHHHcc---CCceeEEECCCCcCchHHHHHHHHH----
Confidence                               00134455555554442    33444444   6677777777777654322211000    


Q ss_pred             cceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCC----CccccccCCCCCEEECcCCCCcccCCcccc-----CC
Q 044830          392 SSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE----FPSSICNLSTIEYLNLSNNSLSGMIPQCLA-----NF  462 (801)
Q Consensus       392 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-----~l  462 (801)
                                        .....++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..
T Consensus       137 ------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  198 (461)
T 1z7x_W          137 ------------------LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP  198 (461)
T ss_dssp             ------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC
T ss_pred             ------------------HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCC
Confidence                              000123577777888877753    355677789999999999999865444443     36


Q ss_pred             CCCCEEeCCCCccccc----CCccccCCCCccEEECCCCcCCCCC-----CccccCCCCCcEEeCCCCcCCCC----cch
Q 044830          463 DSLSLLDLRKNQFRGS----IPQIFSKCYDLVALNLNDNELEGKL-----PPSLANCGDLEVLDVGNNKINDA----FPY  529 (801)
Q Consensus       463 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~i~~~----~~~  529 (801)
                      ++|++|++++|.++..    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|++++.    ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            6999999999999864    4677788999999999999987532     22334689999999999999875    567


Q ss_pred             hccCCCCCCEEEccCCcCcccCCCCCCCC-CCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCC
Q 044830          530 WTATLPRLQVLVLRSNSFHGPIYNNVPSI-KRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY  608 (801)
Q Consensus       530 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~  608 (801)
                      .+..+++|++|++++|++.+..+..+... ....++|+.|++++|.+++.....+...+                     
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---------------------  337 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL---------------------  337 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH---------------------
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH---------------------
Confidence            77789999999999999875433222111 12346999999999999865332221111                     


Q ss_pred             CceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccc-----cccCceEeCcCccccc----cCCccccCCCC
Q 044830          609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK-----LSSLKLLNFSHNILRG----EIPVELTSLTA  679 (801)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~l~~  679 (801)
                                        ..++.|+.|||++|++++..+..+..     .++|+.|+|++|.+++    .+|..+..+++
T Consensus       338 ------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          338 ------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             ------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             ------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence                              22467899999999998776665554     6799999999999997    78999999999


Q ss_pred             CCeEeCcCCcceec
Q 044830          680 LSVLNLSFNQLVGP  693 (801)
Q Consensus       680 L~~L~ls~N~l~g~  693 (801)
                      |++|++++|++++.
T Consensus       400 L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          400 LRELDLSNNCLGDA  413 (461)
T ss_dssp             CCEEECCSSSCCHH
T ss_pred             ccEEECCCCCCCHH
Confidence            99999999998764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=8.6e-28  Score=255.67  Aligned_cols=288  Identities=24%  Similarity=0.259  Sum_probs=235.0

Q ss_pred             CCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcC
Q 044830          195 FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLE  274 (801)
Q Consensus       195 ~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  274 (801)
                      +++.++++++.+.  .+|... .++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~--~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK--AVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS--SCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc--ccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6899999998543  345433 4689999999999998778899999999999999999999889999999999999999


Q ss_pred             CCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccc--cCCCCCCCCCCCEEEccCCcCCcc
Q 044830          275 DNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG--QLPCHASCLPLSHLKLGGNFLDGR  352 (801)
Q Consensus       275 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~L~~n~l~~~  352 (801)
                      +|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+...+|++|++++|.+++ 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-
Confidence            99998 4555544  899999999999997766678899999999999999863  44555522288888888888874 


Q ss_pred             cchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc
Q 044830          353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP  432 (801)
Q Consensus       353 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~  432 (801)
                      +|..+.     ++|++|++++|.+++..+..+                           ..+++|+.|++++|.+++..+
T Consensus       187 l~~~~~-----~~L~~L~l~~n~i~~~~~~~l---------------------------~~l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          187 IPKDLP-----ETLNELHLDHNKIQAIELEDL---------------------------LRYSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             CCSSSC-----SSCSCCBCCSSCCCCCCTTSS---------------------------TTCTTCSCCBCCSSCCCCCCT
T ss_pred             cCcccc-----CCCCEEECCCCcCCccCHHHh---------------------------cCCCCCCEEECCCCcCCcCCh
Confidence            554432     467777777777664333222                           225689999999999998878


Q ss_pred             cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccC------CCCccEEECCCCcCC--CCCC
Q 044830          433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK------CYDLVALNLNDNELE--GKLP  504 (801)
Q Consensus       433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~  504 (801)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|.+.  +..|
T Consensus       235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            88999999999999999998 67888999999999999999999877777765      367999999999987  6778


Q ss_pred             ccccCCCCCcEEeCCCCc
Q 044830          505 PSLANCGDLEVLDVGNNK  522 (801)
Q Consensus       505 ~~l~~l~~L~~L~Ls~n~  522 (801)
                      ..|..+++|+.+++++|+
T Consensus       314 ~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGTTBCCSTTEEC----
T ss_pred             ccccccchhhhhhccccc
Confidence            889999999999999885

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.9e-28  Score=259.43  Aligned_cols=247  Identities=21%  Similarity=0.274  Sum_probs=144.0

Q ss_pred             CCCCC----CCCCCCcccceeEeCC--------CCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCccc
Q 044830           17 KTKSW----NKDGDCCSWDGIICDE--------MTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKIS   84 (801)
Q Consensus        17 ~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~   84 (801)
                      .+++|    ....++|.|.|+.|+.        ...+|++|+|+++.+. .+++  .+..+++|++|+|++|.++  .+|
T Consensus        46 ~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp  120 (328)
T 4fcg_A           46 WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELP  120 (328)
T ss_dssp             HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCC
T ss_pred             hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chh
Confidence            35677    3467899999999952        2346677777776665 4554  5666666666666666665  255


Q ss_pred             ccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhh
Q 044830           85 SNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSL  164 (801)
Q Consensus        85 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l  164 (801)
                      ..++.+++|++|+|++|.++ .+|..+.++++|++|++++|                             ++.+.+|..+
T Consensus       121 ~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-----------------------------~~~~~~p~~~  170 (328)
T 4fcg_A          121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-----------------------------PELTELPEPL  170 (328)
T ss_dssp             SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-----------------------------TTCCCCCSCS
T ss_pred             HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-----------------------------CCccccChhH
Confidence            55666666666666666666 45555666666666666654                             2333333322


Q ss_pred             h---------ccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCc
Q 044830          165 L---------NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP  235 (801)
Q Consensus       165 ~---------~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  235 (801)
                      .         .+  ++|++|++++|.++ .+|..+..+++                        |++|++++|.++ .+|
T Consensus       171 ~~~~~~~~~~~l--~~L~~L~L~~n~l~-~lp~~l~~l~~------------------------L~~L~L~~N~l~-~l~  222 (328)
T 4fcg_A          171 ASTDASGEHQGL--VNLQSLRLEWTGIR-SLPASIANLQN------------------------LKSLKIRNSPLS-ALG  222 (328)
T ss_dssp             EEEC-CCCEEES--TTCCEEEEEEECCC-CCCGGGGGCTT------------------------CCEEEEESSCCC-CCC
T ss_pred             hhccchhhhccC--CCCCEEECcCCCcC-cchHhhcCCCC------------------------CCEEEccCCCCC-cCc
Confidence            2         23  44444444444444 33444444444                        444444444444 244


Q ss_pred             ccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCC
Q 044830          236 DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ  315 (801)
Q Consensus       236 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  315 (801)
                      ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            44555666666666666666566666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCEEEcccccc
Q 044830          316 LSLLELSRNQF  326 (801)
Q Consensus       316 L~~L~l~~n~~  326 (801)
                      |+.+++..+.+
T Consensus       303 L~~l~l~~~~~  313 (328)
T 4fcg_A          303 NCIILVPPHLQ  313 (328)
T ss_dssp             TCEEECCGGGS
T ss_pred             ceEEeCCHHHH
Confidence            66666655443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.3e-27  Score=249.41  Aligned_cols=253  Identities=24%  Similarity=0.266  Sum_probs=220.5

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc--CCccccCCCCCCEEeCCC
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRK  472 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~  472 (801)
                      .-+.++++++.++.+|....+++++|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus         8 ~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            445788888889888887788999999999999965555689999999999999999843  356777899999999999


Q ss_pred             CcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcc-c
Q 044830          473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG-P  550 (801)
Q Consensus       473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~  550 (801)
                      |.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+ .
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            9998 467779999999999999999987655 678999999999999999999999999999999999999999986 4


Q ss_pred             CCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcc
Q 044830          551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLN  630 (801)
Q Consensus       551 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  630 (801)
                      .+..+    ..+++|++|++++|++++..|.. +.                                          .++
T Consensus       167 ~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------------------------~l~  199 (306)
T 2z66_A          167 LPDIF----TELRNLTFLDLSQCQLEQLSPTA-FN------------------------------------------SLS  199 (306)
T ss_dssp             ECSCC----TTCTTCCEEECTTSCCCEECTTT-TT------------------------------------------TCT
T ss_pred             chhHH----hhCcCCCEEECCCCCcCCcCHHH-hc------------------------------------------CCC
Confidence            44444    88999999999999998766633 11                                          245


Q ss_pred             cceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCC-CCCeEeCcCCcceecCC
Q 044830          631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT-ALSVLNLSFNQLVGPIP  695 (801)
Q Consensus       631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP  695 (801)
                      .|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+..++ +|++|++++|++++..+
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            789999999999988888899999999999999999999999999994 99999999999998654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-26  Score=257.27  Aligned_cols=251  Identities=22%  Similarity=0.207  Sum_probs=223.6

Q ss_pred             eeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830          396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF  475 (801)
Q Consensus       396 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l  475 (801)
                      ...+++++..++.+|....++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            45678888888888877788999999999999988889999999999999999999998889999999999999999999


Q ss_pred             cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC-cCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830          476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN-KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN  554 (801)
Q Consensus       476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  554 (801)
                      ++..+..|..+++|++|+|++|++++..+..|.++++|+.|++++| .+....+..+..+++|++|++++|++.+. +  
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~--  212 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P--  212 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C--
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c--
Confidence            9887888999999999999999999777778999999999999995 55555556789999999999999999864 2  


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceE
Q 044830          555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT  634 (801)
Q Consensus       555 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  634 (801)
                         .+..+++|+.|+|++|++++..|.. |.                                          .++.|+.
T Consensus       213 ---~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~~  246 (452)
T 3zyi_A          213 ---NLTPLVGLEELEMSGNHFPEIRPGS-FH------------------------------------------GLSSLKK  246 (452)
T ss_dssp             ---CCTTCTTCCEEECTTSCCSEECGGG-GT------------------------------------------TCTTCCE
T ss_pred             ---cccccccccEEECcCCcCcccCccc-cc------------------------------------------CccCCCE
Confidence               2378999999999999999776643 22                                          2456899


Q ss_pred             EEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCC
Q 044830          635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP  695 (801)
Q Consensus       635 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  695 (801)
                      |+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.....
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            9999999999999999999999999999999998888889999999999999999876543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.4e-30  Score=298.77  Aligned_cols=315  Identities=14%  Similarity=0.084  Sum_probs=178.3

Q ss_pred             CCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCC--Cccccc------------ccCCC
Q 044830           26 DCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNG--TKISSN------------FGQFT   91 (801)
Q Consensus        26 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~~~~------------~~~l~   91 (801)
                      -|++|.++.+...    ..+.+... .....+.  .+..+++|++|+|+++....  ..+|..            +..++
T Consensus        40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           40 VCRRWFKIDSETR----EHVTMALC-YTATPDR--LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             SCHHHHHHHHHHC----CEEEESCG-GGSCHHH--HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HhHHHHHhhhccc----cEEEEeec-cccChHH--HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            3558999865321    12233321 1112222  56688999999998754210  002211            22788


Q ss_pred             CCCEEeCCCCCCccccccCCcCC--CCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCc----hhhh
Q 044830           92 KLTHLNLSFSYFSGIVPSQISRL--SKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVP----SSLL  165 (801)
Q Consensus        92 ~L~~L~Ls~n~i~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~  165 (801)
                      +|++|+|++|.+++..+..+...  .+|++|++++|.   .+....++....++++|++|++++|.+.+...    ..+.
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE---EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC---CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            99999999988877666666553  348999988872   12223445555677888888888887665532    2334


Q ss_pred             ccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCC
Q 044830          166 NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDL  244 (801)
Q Consensus       166 ~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L  244 (801)
                      .+  ++|++|++++|.+++...                     ..++... .+++|++|++++|.+.+ ++..+..+++|
T Consensus       190 ~~--~~L~~L~L~~n~~~~~~~---------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L  245 (592)
T 3ogk_B          190 HN--TSLEVLNFYMTEFAKISP---------------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL  245 (592)
T ss_dssp             HC--CCCCEEECTTCCCSSCCH---------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred             cC--CCccEEEeeccCCCccCH---------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence            44  566666666655542111                     1111111 34555555555555553 55666677777


Q ss_pred             CEEEcccccCc---ccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCC-ccCcCCCCCCEEE
Q 044830          245 KFLDLYVCYFD---GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLP-LSAFNLTQLSLLE  320 (801)
Q Consensus       245 ~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~  320 (801)
                      +.|+++.+...   ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+... ..+..+++|++|+
T Consensus       246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             HhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence            77777653322   23334566677777777776532 3556667777778888887777654332 2345677888888


Q ss_pred             cccccccccCCCCC-CCCCCCEEEccC-----------CcCCcccchh-hcCCCCCCCccEEEccCCCccc
Q 044830          321 LSRNQFVGQLPCHA-SCLPLSHLKLGG-----------NFLDGRIPSW-LFNLSTSENLVELDLSNNKLTG  378 (801)
Q Consensus       321 l~~n~~~~~~~~~~-~~~~L~~L~L~~-----------n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~  378 (801)
                      ++++...+.++... .+++|++|++++           +.+++..... ...   +++|++|+++.+.+++
T Consensus       325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---CQELEYMAVYVSDITN  392 (592)
T ss_dssp             EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH---CTTCSEEEEEESCCCH
T ss_pred             ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh---CccCeEEEeecCCccH
Confidence            77332222222222 567788888873           4444322211 222   5666666665555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=254.51  Aligned_cols=277  Identities=20%  Similarity=0.230  Sum_probs=197.4

Q ss_pred             EEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccccc
Q 044830          399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS  478 (801)
Q Consensus       399 L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  478 (801)
                      .+++++.++.+|....++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|++++.
T Consensus        36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            56666777777666667788888888887765555777788888888888888777777777778888888888887755


Q ss_pred             CCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCC-cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830          479 IPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNN-KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP  556 (801)
Q Consensus       479 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  556 (801)
                      .+..|..+++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+..+++|++|++++|++.+..+..+ 
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-  194 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-  194 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-
Confidence            55557777888888888888774433 36777788888888877 4666666677777888888888887777655554 


Q ss_pred             CCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEE
Q 044830          557 SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTID  636 (801)
Q Consensus       557 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  636 (801)
                         ..+++|++|++++|+++ .+|...+..++.|+.++...+.+.......               .........++.++
T Consensus       195 ---~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------l~~~~~~~~l~~l~  255 (353)
T 2z80_A          195 ---KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE---------------LSTGETNSLIKKFT  255 (353)
T ss_dssp             ---TTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------CCCCCCEEE
T ss_pred             ---hccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc---------------cccccccchhhccc
Confidence               66778888888888774 556555555555555444433322211100               00011245577888


Q ss_pred             ccCCeeee----eccccccccccCceEeCcCccccccCCcc-ccCCCCCCeEeCcCCcceecCCC
Q 044830          637 LSNNRFEG----MIPKEVGKLSSLKLLNFSHNILRGEIPVE-LTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       637 Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      |+++.+++    .+|+.++.+++|+.|+|++|+++ .+|.. |..+++|++|++++|++++.+|.
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            88888876    47888999999999999999999 55655 68999999999999999998773

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.8e-26  Score=253.92  Aligned_cols=251  Identities=21%  Similarity=0.208  Sum_probs=223.1

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                      ....+++++..++.+|....++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            34578888888998888888999999999999998888899999999999999999998888999999999999999999


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC-cCCCCcchhccCCCCCCEEEccCCcCcccCCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN-KINDAFPYWTATLPRLQVLVLRSNSFHGPIYN  553 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  553 (801)
                      +++..+..|..+++|++|++++|.+++..+..|.++++|++|++++| .+....+..+..+++|++|++++|.++.. + 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-
Confidence            99777778999999999999999999887788999999999999995 55555566889999999999999999843 2 


Q ss_pred             CCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccce
Q 044830          554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFT  633 (801)
Q Consensus       554 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  633 (801)
                          .+..+++|+.|+|++|++++..|.. |.                                          .++.|+
T Consensus       202 ----~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~  234 (440)
T 3zyj_A          202 ----NLTPLIKLDELDLSGNHLSAIRPGS-FQ------------------------------------------GLMHLQ  234 (440)
T ss_dssp             ----CCTTCSSCCEEECTTSCCCEECTTT-TT------------------------------------------TCTTCC
T ss_pred             ----ccCCCcccCEEECCCCccCccChhh-hc------------------------------------------cCccCC
Confidence                2378999999999999999766643 22                                          245789


Q ss_pred             EEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecC
Q 044830          634 TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI  694 (801)
Q Consensus       634 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  694 (801)
                      .|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++....
T Consensus       235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            9999999999999999999999999999999999888888999999999999999997644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=7e-27  Score=242.90  Aligned_cols=153  Identities=20%  Similarity=0.194  Sum_probs=91.5

Q ss_pred             eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc-c
Q 044830          397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ-F  475 (801)
Q Consensus       397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l  475 (801)
                      +.++++++.++.+|....+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|. +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            455666666666655555666666666666665555556666666666666666665556666666666666666665 5


Q ss_pred             cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcc
Q 044830          476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG  549 (801)
Q Consensus       476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~  549 (801)
                      ....|..|..+++|++|++++|.+++..|..+.++++|++|++++|++.+..+..+..+++|++|++++|++.+
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            54445556666666666666666665555555556666666666666655554445555555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=9.5e-27  Score=249.88  Aligned_cols=289  Identities=21%  Similarity=0.204  Sum_probs=165.6

Q ss_pred             CCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEe
Q 044830           18 TKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLN   97 (801)
Q Consensus        18 l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~   97 (801)
                      -..|.....+|.|.|+ |+-          ++++++ .+|.  .+.  ++|++|+|++|.++.. .+..|..+++|++|+
T Consensus        20 ~~~~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~   82 (353)
T 2z80_A           20 EESSNQASLSCDRNGI-CKG----------SSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALV   82 (353)
T ss_dssp             -------CCEECTTSE-EEC----------CSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEE
T ss_pred             ccCCCccCCCCCCCeE-eeC----------CCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEE
Confidence            3456556788999987 753          445554 3443  333  5899999999988764 344688899999999


Q ss_pred             CCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCc-hhhhccCCCCccEEE
Q 044830           98 LSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVP-SSLLNLSSASLISLS  176 (801)
Q Consensus        98 Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~~~L~~L~  176 (801)
                      +++|.+++..|..|+++++|++|++++|.  +.   ...+..+.++++|++|++++|.+....+ ..+..+  ++|++|+
T Consensus        83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l--~~L~~L~  155 (353)
T 2z80_A           83 LTSNGINTIEEDSFSSLGSLEHLDLSYNY--LS---NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL--TKLQILR  155 (353)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC--CS---SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC--TTCCEEE
T ss_pred             CCCCccCccCHhhcCCCCCCCEEECCCCc--CC---cCCHhHhCCCccCCEEECCCCCCcccCchhhhccC--CCCcEEE
Confidence            99999988778888888888888888883  22   1222335566666666666665554333 344444  4555555


Q ss_pred             ccCC-cCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCc
Q 044830          177 LGNC-FLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFD  255 (801)
Q Consensus       177 L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  255 (801)
                      +++| .+.+..+..+..+                        ++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus       156 l~~n~~~~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGL------------------------TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             EEESSSCCEECTTTTTTC------------------------CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCccccccCHHHccCC------------------------CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            5554 2333333344444                        44555555555555444555555555555555555554


Q ss_pred             ccCcccccCCCCCCEEEcCCCCCccccCccc---cCCCCCcEeeccCeeeee----eCCccCcCCCCCCEEEcccccccc
Q 044830          256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVF---GNLSKLTRISLAHLNFTG----QLPLSAFNLTQLSLLELSRNQFVG  328 (801)
Q Consensus       256 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~  328 (801)
                      ...+..+..+++|++|++++|.+++..+..+   .....++.++++++.+.+    .+|..+..+++|++|++++|+++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            3222223345555555555555554333322   123445556666555543    245556666777777777777663


Q ss_pred             cCCCCC-CCCCCCEEEccCCcCCcccc
Q 044830          329 QLPCHA-SCLPLSHLKLGGNFLDGRIP  354 (801)
Q Consensus       329 ~~~~~~-~~~~L~~L~L~~n~l~~~~~  354 (801)
                      ..+..+ .+++|++|++++|++.+..|
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            333323 66677777777777766544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=8.8e-27  Score=246.57  Aligned_cols=225  Identities=19%  Similarity=0.267  Sum_probs=183.3

Q ss_pred             ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEEC
Q 044830          415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL  494 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  494 (801)
                      ++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            57888888888887 67777888888888888888888 77888888888888888888888 67888888888888888


Q ss_pred             CCCcCCCCCCccccC---------CCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCC
Q 044830          495 NDNELEGKLPPSLAN---------CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL  565 (801)
Q Consensus       495 ~~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L  565 (801)
                      ++|++.+.+|..+..         +++|++|++++|++. .+|..+..+++|++|++++|++.+. +.    .+..+++|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~----~l~~l~~L  231 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GP----AIHHLPKL  231 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CG----GGGGCTTC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-ch----hhccCCCC
Confidence            888888888876654         888888888888887 6677788888888888888888752 22    34778888


Q ss_pred             cEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeee
Q 044830          566 RIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGM  645 (801)
Q Consensus       566 ~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  645 (801)
                      ++|++++|++.+.+|..+ .                                          .++.|+.|+|++|.+.+.
T Consensus       232 ~~L~Ls~n~~~~~~p~~~-~------------------------------------------~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIF-G------------------------------------------GRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             CEEECTTCTTCCBCCCCT-T------------------------------------------CCCCCCEEECTTCTTCCB
T ss_pred             CEEECcCCcchhhhHHHh-c------------------------------------------CCCCCCEEECCCCCchhh
Confidence            888888888888777431 1                                          145678888888888888


Q ss_pred             ccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcce
Q 044830          646 IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV  691 (801)
Q Consensus       646 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  691 (801)
                      +|..++++++|+.|+|++|.+.+.+|..+.++++|+.+++..|.+.
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888889999999998888888988999999888888866543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=5.8e-29  Score=287.25  Aligned_cols=409  Identities=15%  Similarity=0.169  Sum_probs=190.8

Q ss_pred             ccccCCcCCCCCCEEeCCCCcCCC-------ccc---cCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEE
Q 044830          106 IVPSQISRLSKLVALDLSSDIPRT-------KFE---QHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISL  175 (801)
Q Consensus       106 ~~p~~l~~l~~L~~L~Ls~n~~~~-------~~~---~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L  175 (801)
                      ..+..+..+++|++|+++++....       .+.   ...++....++++|++|++++|.+.+..+..+......+|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            334455677888888887752100       000   0012223336667777777766665555555544211226666


Q ss_pred             EccCCcC-cc-CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCccc----CcccccCCCCCCEEEc
Q 044830          176 SLGNCFL-RG-EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGK----IPDTIGNLRDLKFLDL  249 (801)
Q Consensus       176 ~L~~n~l-~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L  249 (801)
                      +|++|.. .. .++.....+++|++|++++|                        .+++.    ++..+..+++|++|++
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~------------------------~~~~~~~~~l~~~~~~~~~L~~L~L  199 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEES------------------------SFSEKDGKWLHELAQHNTSLEVLNF  199 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTC------------------------EEECCCSHHHHHHHHHCCCCCEEEC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccc------------------------cccCcchhHHHHHHhcCCCccEEEe
Confidence            6666541 10 01111124555555555555                        33222    1222333444444444


Q ss_pred             ccccCc----ccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeee---eeCCccCcCCCCCCEEEcc
Q 044830          250 YVCYFD----GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT---GQLPLSAFNLTQLSLLELS  322 (801)
Q Consensus       250 ~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~  322 (801)
                      ++|.+.    +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+...   +..+..+..+++|+.|+++
T Consensus       200 ~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (592)
T 3ogk_B          200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS  278 (592)
T ss_dssp             TTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET
T ss_pred             eccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc
Confidence            444443    1222233344455555555544442 3344444455555554432111   1122233444555555554


Q ss_pred             cccccccCCCCC-CCCCCCEEEccCCcCCcccchh-hcCCCCCCCccEEEccCCCcccc-ccccCCCCcccccceeeeEE
Q 044830          323 RNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSW-LFNLSTSENLVELDLSNNKLTGQ-IFQLDQWPVERISSVELRHL  399 (801)
Q Consensus       323 ~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~L~~L  399 (801)
                      ++.. +.++..+ .+++|++|++++|.+++..... +.   .+++|+.|+++ +.+.+. ++... ..++     +|++|
T Consensus       279 ~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~---~~~~L~~L~L~-~~~~~~~l~~~~-~~~~-----~L~~L  347 (592)
T 3ogk_B          279 YMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ---KCPNLEVLETR-NVIGDRGLEVLA-QYCK-----QLKRL  347 (592)
T ss_dssp             TCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT---TCTTCCEEEEE-GGGHHHHHHHHH-HHCT-----TCCEE
T ss_pred             ccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH---hCcCCCEEecc-CccCHHHHHHHH-HhCC-----CCCEE
Confidence            4321 1222222 4455555555555544322211 12   24555555555 222211 11110 0011     34444


Q ss_pred             EecC-----------CCCCCCCC----CccccccEEEecCCCCCCCCcccccc-CCCCCEEECc----CCCCccc-----
Q 044830          400 DVQS-----------NLLQRLPF----ILSSRIRFLSVSDNKLTGEFPSSICN-LSTIEYLNLS----NNSLSGM-----  454 (801)
Q Consensus       400 ~l~~-----------n~l~~~~~----~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~i~~~-----  454 (801)
                      ++++           +.+++...    ..+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            4441           22222111    12456777777666666555555544 6667777775    4455542     


Q ss_pred             CCccccCCCCCCEEeCCCCc--ccccCCcccc-CCCCccEEECCCCcCCC-CCCccccCCCCCcEEeCCCCcCCCC-cch
Q 044830          455 IPQCLANFDSLSLLDLRKNQ--FRGSIPQIFS-KCYDLVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKINDA-FPY  529 (801)
Q Consensus       455 ~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~  529 (801)
                      ++..+.++++|++|+++.|.  +++..+..+. .+++|++|++++|.+++ .++..+.++++|++|++++|++++. ++.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            22334556677777765432  4433333222 35667777777666654 2333445666677777777666543 233


Q ss_pred             hccCCCCCCEEEccCCcCccc
Q 044830          530 WTATLPRLQVLVLRSNSFHGP  550 (801)
Q Consensus       530 ~~~~l~~L~~L~L~~N~l~~~  550 (801)
                      ....+++|++|++++|++++.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            334566666666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.7e-26  Score=238.53  Aligned_cols=230  Identities=23%  Similarity=0.233  Sum_probs=203.2

Q ss_pred             ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCC
Q 044830          417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND  496 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  496 (801)
                      -+.++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            367899999888 456543  46899999999999988888899999999999999999988899999999999999999


Q ss_pred             Cc-CCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          497 NE-LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       497 n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      |. +....|..+..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+..+    ..+++|+.|++++|++
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF----RDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh----ccCCCccEEECCCCcc
Confidence            98 877778899999999999999999999999999999999999999999987655444    7899999999999999


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      ++..+ ..+.                                          .++.|+.|+|++|++++..|..++++++
T Consensus       166 ~~~~~-~~~~------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          166 SSVPE-RAFR------------------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             CEECT-TTTT------------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cccCH-HHhc------------------------------------------CccccCEEECCCCcccccCHhHccCccc
Confidence            85443 2121                                          2457899999999999999999999999


Q ss_pred             CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830          656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      |+.|+|++|.+++..|..+..+++|++|++++|++.+..+.
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            99999999999988778899999999999999999987664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.4e-25  Score=233.98  Aligned_cols=162  Identities=22%  Similarity=0.336  Sum_probs=125.7

Q ss_pred             ccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccc-cCCccccCCCCccEE
Q 044830          415 SRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG-SIPQIFSKCYDLVAL  492 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  492 (801)
                      ++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+..+++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            466666666666665433 467778888888888888887777778888888888888888876 567778888888888


Q ss_pred             ECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCC-CCCcEEEcc
Q 044830          493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF-PELRIIDIS  571 (801)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l-~~L~~LdLs  571 (801)
                      ++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+..+    ..+ ++|++|+++
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~~~L~~L~L~  256 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL----QHFPSSLAFLNLT  256 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC----CCCCTTCCEEECT
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH----HhhhccCCEEEcc
Confidence            888888887777788888888888888888888777778888888888888888887666554    555 478888888


Q ss_pred             CCcCCccCc
Q 044830          572 RNGFTGLLP  580 (801)
Q Consensus       572 ~N~l~~~~p  580 (801)
                      +|++++..+
T Consensus       257 ~N~~~~~c~  265 (306)
T 2z66_A          257 QNDFACTCE  265 (306)
T ss_dssp             TCCEECSGG
T ss_pred             CCCeecccC
Confidence            888876544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.7e-25  Score=244.27  Aligned_cols=252  Identities=22%  Similarity=0.214  Sum_probs=216.4

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      ....++.++..++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888887 5666554  689999999999999889999999999999999999999888999999999999999


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|++++..+..|.++++|++|++++|++.+..+..+..+++|+.|++++|...+.++..   .+..+++|++|+|++|++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcc
Confidence            99999877788999999999999999999888889999999999999996554444432   347899999999999999


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      ++. |.  +                                          ..++.|+.|||++|++++..|..|.++++
T Consensus       209 ~~~-~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  243 (452)
T 3zyi_A          209 KDM-PN--L------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSS  243 (452)
T ss_dssp             SSC-CC--C------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred             ccc-cc--c------------------------------------------cccccccEEECcCCcCcccCcccccCccC
Confidence            843 41  1                                          11467899999999999999999999999


Q ss_pred             CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCCCcCcCcCCCCCCCCCCC
Q 044830          656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFDSFQNDSFIGNLGLCGFA  718 (801)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~  718 (801)
                      |+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+....+.||+.-|...
T Consensus       244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999999999999999999999999999655543 235556666788999877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1e-27  Score=252.44  Aligned_cols=248  Identities=21%  Similarity=0.234  Sum_probs=188.7

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCC-CCCccccc-------cCCCCCEEECcCCCCcccCCccc--cCCCC
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLT-GEFPSSIC-------NLSTIEYLNLSNNSLSGMIPQCL--ANFDS  464 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~i~~~~~~~l--~~l~~  464 (801)
                      +++.+++++|.+ .++......++.|++++|.+. ..+|..+.       ++++|++|++++|.+++.+|..+  ..+++
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  122 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD  122 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred             CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence            566666677766 444333455888888888884 45565554       68889999999999988888765  78889


Q ss_pred             CCEEeCCCCcccccCCccccCC-----CCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCC--cchhc--cCCC
Q 044830          465 LSLLDLRKNQFRGSIPQIFSKC-----YDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDA--FPYWT--ATLP  535 (801)
Q Consensus       465 L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~--~~l~  535 (801)
                      |++|++++|.+++. |..+..+     ++|++|++++|++++..|..+.++++|++|++++|++.+.  .+..+  ..++
T Consensus       123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  201 (312)
T 1wwl_A          123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP  201 (312)
T ss_dssp             CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred             ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence            99999999998876 7777666     8899999999999888778888899999999999987764  23334  7888


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEE
Q 044830          536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI  615 (801)
Q Consensus       536 ~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  615 (801)
                      +|++|++++|++.+... .....+..+++|++|++++|++++.+|...+.                              
T Consensus       202 ~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------  250 (312)
T 1wwl_A          202 TLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRDAAGAPSCD------------------------------  250 (312)
T ss_dssp             TCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC------------------------------
T ss_pred             CCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCcccchhhhh------------------------------
Confidence            99999999998873210 00011246788999999999998776532111                              


Q ss_pred             EEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830          616 LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       616 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                                  .++.|+.|||++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|++|++++|++++
T Consensus       251 ------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 ------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                        1356889999999998 7777776  8899999999999876 66 8899999999999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=8.8e-25  Score=241.86  Aligned_cols=252  Identities=20%  Similarity=0.226  Sum_probs=216.8

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      ....++.++..++ .+|..+.  +.++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4568888888888 5676554  689999999999998888999999999999999999998888999999999999999


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|++++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|...+.++..   .+..+++|++|++++|++
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcC
Confidence            99999777778999999999999999999988889999999999999996554444332   347899999999999999


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      + .+|.  +                                          ..++.|+.|||++|++++..|..|.++++
T Consensus       198 ~-~~~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          198 R-EIPN--L------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             S-SCCC--C------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             c-cccc--c------------------------------------------CCCcccCEEECCCCccCccChhhhccCcc
Confidence            7 4442  1                                          11467899999999999999999999999


Q ss_pred             CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCCCcCcCcCCCCCCCCCCC
Q 044830          656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFDSFQNDSFIGNLGLCGFA  718 (801)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~  718 (801)
                      |+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+......+||.-|...
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            999999999999999999999999999999999999655543 235556666788999888653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=6.2e-29  Score=287.20  Aligned_cols=265  Identities=17%  Similarity=0.139  Sum_probs=139.8

Q ss_pred             CCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCC-CCc-c------------cccccCCC
Q 044830           26 DCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFN-GTK-I------------SSNFGQFT   91 (801)
Q Consensus        26 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~-~------------~~~~~~l~   91 (801)
                      -|++|.++..    ...+.++++.....  . +...+..+++|++|+|+++... ... .            +..+..++
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~~--~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYAV--S-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTSS--C-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHhhh----hhceEEeecccccc--C-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            4668998832    23345666554321  1 1125678899999999987521 111 1            11234677


Q ss_pred             CCCEEeCCCCCCccccccCCc-CCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCC
Q 044830           92 KLTHLNLSFSYFSGIVPSQIS-RLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSA  170 (801)
Q Consensus        92 ~L~~L~Ls~n~i~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~  170 (801)
                      +|++|+|++|.+++..+..+. .+++|++|++++|.   .+....++....++++|++|++++|.+.+..+..+..+   
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~---  179 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF---  179 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE---EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS---
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC---CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH---
Confidence            888888888888776665564 57888888888772   11222345555667777777777776665554444332   


Q ss_pred             CccEEEccCCcCccCCCccCCCCCCCCEEeccCCC--CCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEE
Q 044830          171 SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNG--LLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFL  247 (801)
Q Consensus       171 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  247 (801)
                                         ...+++|++|++++|.  +....+.... .+++|++|++++|...+.++..+..+++|+.|
T Consensus       180 -------------------~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          180 -------------------PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL  240 (594)
T ss_dssp             -------------------CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred             -------------------hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence                               1234455555555542  0000011111 23555555555552212245555566666666


Q ss_pred             Eccccc-------CcccCcccccCCCCCCEE-EcCCCCCccccCccccCCCCCcEeeccCeeeeeeCC-ccCcCCCCCCE
Q 044830          248 DLYVCY-------FDGQVPASLSNLKQLTVL-NLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLP-LSAFNLTQLSL  318 (801)
Q Consensus       248 ~L~~n~-------l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~  318 (801)
                      ++..+.       +.+ ++..+.++++|+.| .+.... ...++..+..+++|++|++++|.+.+... ..+..+++|++
T Consensus       241 ~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~  318 (594)
T 2p1m_B          241 GTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR  318 (594)
T ss_dssp             ECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred             ccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence            644332       222 23345666666666 232221 12333444455666666666665443211 11335566666


Q ss_pred             EEcccc
Q 044830          319 LELSRN  324 (801)
Q Consensus       319 L~l~~n  324 (801)
                      |++++|
T Consensus       319 L~l~~~  324 (594)
T 2p1m_B          319 LWVLDY  324 (594)
T ss_dssp             EEEEGG
T ss_pred             EeCcCc
Confidence            666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=6.4e-24  Score=241.57  Aligned_cols=262  Identities=26%  Similarity=0.296  Sum_probs=170.8

Q ss_pred             CCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccce
Q 044830          315 QLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV  394 (801)
Q Consensus       315 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  394 (801)
                      +++.|++++|.++ .+|..+. ++|++|++++|.++ .+|.   .   +++|++|++++|+++                 
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~-~lp~---~---l~~L~~L~Ls~N~l~-----------------   94 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-SLPA---L---PPELRTLEVSGNQLT-----------------   94 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCS-CCCC---C---CTTCCEEEECSCCCS-----------------
T ss_pred             CCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCC-CCCC---c---CCCCCEEEcCCCcCC-----------------
Confidence            4667777777766 4443332 56666666666665 3443   1   455666666666554                 


Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                                   .++. .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|+
T Consensus        95 -------------~lp~-~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A           95 -------------SLPV-LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             -------------CCCC-CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred             -------------cCCC-CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence                         3332 34566777777776664 333   45667777777777764 3432   3677777777777


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN  554 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  554 (801)
                      +++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|++.+..+    .+++|+.|++++|.+... +  
T Consensus       153 l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l-~--  217 (622)
T 3g06_A          153 LAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-P--  217 (622)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC-C--
T ss_pred             CCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc-C--
Confidence            764 333   24567777777777764 44   345777777777777765322    246777888888777632 1  


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceE
Q 044830          555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT  634 (801)
Q Consensus       555 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  634 (801)
                           ..+++|+.|++++|++++ +|..                                              ++.|+.
T Consensus       218 -----~~~~~L~~L~Ls~N~L~~-lp~~----------------------------------------------l~~L~~  245 (622)
T 3g06_A          218 -----ALPSGLKELIVSGNRLTS-LPVL----------------------------------------------PSELKE  245 (622)
T ss_dssp             -----CCCTTCCEEECCSSCCSC-CCCC----------------------------------------------CTTCCE
T ss_pred             -----CCCCCCCEEEccCCccCc-CCCC----------------------------------------------CCcCcE
Confidence                 224678888888888774 4411                                              345778


Q ss_pred             EEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830          635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       635 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      |+|++|+|+ .+|.   .+++|+.|+|++|.|+ .+|..+.++++|+.|+|++|+++|.+|.
T Consensus       246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             EECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            888888887 4554   5678888888888888 6788888888888888888888887775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=7.7e-24  Score=218.79  Aligned_cols=213  Identities=20%  Similarity=0.234  Sum_probs=131.1

Q ss_pred             CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830          440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444444444344444455555555554444444444455555555555555554444445555555555555


Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830          520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID  599 (801)
Q Consensus       520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~  599 (801)
                      +|++.+..+..+..+++|++|++++|++.+..   +|..+..+++|+.|++++|++++..+.. +..+..+         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L---------  175 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM---------  175 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTC---------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHH-hhhhhhc---------
Confidence            55555544444555555556666555554421   1222366777777888888777554432 3433332         


Q ss_pred             ccccccCCCCceeeEEEEeccchhhhhhhcccce-EEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCC
Q 044830          600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFT-TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT  678 (801)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  678 (801)
                                                    +.+. .|++++|++++..+..+.. .+|+.|+|++|++++..+..+..++
T Consensus       176 ------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~  224 (276)
T 2z62_A          176 ------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLT  224 (276)
T ss_dssp             ------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred             ------------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccc
Confidence                                          2222 7999999999776665554 5899999999999988777889999


Q ss_pred             CCCeEeCcCCcceecCCC
Q 044830          679 ALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       679 ~L~~L~ls~N~l~g~iP~  696 (801)
                      +|+.|++++|++++..|.
T Consensus       225 ~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          225 SLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             SCCEEECCSSCBCCCTTT
T ss_pred             cccEEEccCCcccccCCc
Confidence            999999999999998875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.6e-25  Score=236.16  Aligned_cols=260  Identities=17%  Similarity=0.147  Sum_probs=174.1

Q ss_pred             CCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccC
Q 044830          220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH  299 (801)
Q Consensus       220 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  299 (801)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455566666554444445566778888888888877767777888888888888888775544  77778888888888


Q ss_pred             eeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccc
Q 044830          300 LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ  379 (801)
Q Consensus       300 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~  379 (801)
                      |.+.+..     ..++|++|++++|.+++..+..  +++|++|++++|.+++..+..+..   +++|++|++++|.+++.
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGC---RSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGG---GSSEEEEECTTSCCCEE
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhc---cCCCCEEECCCCCCCcc
Confidence            8877532     2377888888888777544332  456777777777777655555554   56777777777776654


Q ss_pred             ccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccc
Q 044830          380 IFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCL  459 (801)
Q Consensus       380 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l  459 (801)
                      .+.....                          .+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+
T Consensus       160 ~~~~~~~--------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~  210 (317)
T 3o53_A          160 NFAELAA--------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EF  210 (317)
T ss_dssp             EGGGGGG--------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GG
T ss_pred             cHHHHhh--------------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hh
Confidence            3332211                          134666677777766643 2 22346777777777777775433 46


Q ss_pred             cCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC-CCCCccccCCCCCcEEeCCCC
Q 044830          460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE-GKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       460 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      ..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++++
T Consensus       211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            77777777777777777 45666777777777888777777 566667777777777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.8e-25  Score=235.75  Aligned_cols=266  Identities=19%  Similarity=0.181  Sum_probs=187.7

Q ss_pred             CCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcc
Q 044830          243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELS  322 (801)
Q Consensus       243 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  322 (801)
                      .++.++++.+.+.......+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34556677777765555666677899999999999998888899999999999999999987655  7889999999999


Q ss_pred             cccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEec
Q 044830          323 RNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQ  402 (801)
Q Consensus       323 ~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~  402 (801)
                      +|.+++..    ..++|++|++++|.+++..+..      +++|++|++++|++++..+..+                  
T Consensus        89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~------~~~L~~L~l~~N~l~~~~~~~~------------------  140 (317)
T 3o53_A           89 NNYVQELL----VGPSIETLHAANNNISRVSCSR------GQGKKNIYLANNKITMLRDLDE------------------  140 (317)
T ss_dssp             SSEEEEEE----ECTTCCEEECCSSCCSEEEECC------CSSCEEEECCSSCCCSGGGBCT------------------
T ss_pred             CCcccccc----CCCCcCEEECCCCccCCcCccc------cCCCCEEECCCCCCCCccchhh------------------
Confidence            99887533    2366777777777776433321      3456666666666554322211                  


Q ss_pred             CCCCCCCCCCccccccEEEecCCCCCCCCcccc-ccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCc
Q 044830          403 SNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ  481 (801)
Q Consensus       403 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  481 (801)
                               ..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+  ...+++|++|++++|++++. |.
T Consensus       141 ---------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~  208 (317)
T 3o53_A          141 ---------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GP  208 (317)
T ss_dssp             ---------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CG
T ss_pred             ---------hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hh
Confidence                     124567777777777776655555 367788888888888775522  23477788888888887754 44


Q ss_pred             cccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC-CCcchhccCCCCCCEEEccCC-cCcccC
Q 044830          482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN-DAFPYWTATLPRLQVLVLRSN-SFHGPI  551 (801)
Q Consensus       482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~  551 (801)
                      .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..+.++..+++|+.|+++++ .+.|..
T Consensus       209 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            4777778888888888877 45666777778888888888777 666777777777777777743 444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=6.4e-25  Score=245.05  Aligned_cols=222  Identities=21%  Similarity=0.229  Sum_probs=185.4

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            4589999999999998888889999999999999999987665  8889999999999999885432     37899999


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      +++|.+++..+.   .+++|+.|++++|++.+..|..+..+++|+.|+|++|.+++..+..+   ...+++|+.|+|++|
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYN  179 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTS
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCCC
Confidence            999999876554   45789999999999999888888999999999999999988766544   136889999999999


Q ss_pred             cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830          574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL  653 (801)
Q Consensus       574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  653 (801)
                      .+++..+..                                             .++.|+.|||++|.+++.+| .++.+
T Consensus       180 ~l~~~~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l  213 (487)
T 3oja_A          180 FIYDVKGQV---------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSA  213 (487)
T ss_dssp             CCCEEECCC---------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred             ccccccccc---------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCC
Confidence            988652210                                             14678999999999997655 48899


Q ss_pred             ccCceEeCcCccccccCCccccCCCCCCeEeCcCCcce-ecCC
Q 044830          654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV-GPIP  695 (801)
Q Consensus       654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~iP  695 (801)
                      ++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            999999999999995 7888999999999999999998 5555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=8e-27  Score=245.56  Aligned_cols=269  Identities=20%  Similarity=0.165  Sum_probs=182.9

Q ss_pred             CCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCccccccc-------CC
Q 044830           18 TKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFG-------QF   90 (801)
Q Consensus        18 l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-------~l   90 (801)
                      ..+|.....|+.+..+.......++++++++++.+  .++.  .+...  |++|+|++|.++...++..+.       .+
T Consensus        21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l   94 (312)
T 1wwl_A           21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI   94 (312)
T ss_dssp             SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred             ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc
Confidence            45676666777776654332234566677777777  4443  34433  777777777775444555454       67


Q ss_pred             CCCCEEeCCCCCCccccccCC--cCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccC
Q 044830           91 TKLTHLNLSFSYFSGIVPSQI--SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLS  168 (801)
Q Consensus        91 ~~L~~L~Ls~n~i~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~  168 (801)
                      ++|++|+|++|.+++.+|..+  ..+++|++|++++|.                             +.+. |..+..+.
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----------------------------l~~~-~~~~~~l~  144 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-----------------------------WATR-DAWLAELQ  144 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-----------------------------CSSS-SSHHHHHH
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-----------------------------Ccch-hHHHHHHH
Confidence            778888888887777777665  677777777777762                             2222 22222220


Q ss_pred             ---CCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccC---CCCC--CCCCCCCEEEccCccCcc--cCc-cc
Q 044830          169 ---SASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGN---LPTS--NWSSPLRILDLSITKFSG--KIP-DT  237 (801)
Q Consensus       169 ---~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~---~~~~--~~~~~L~~L~Ls~n~l~~--~~~-~~  237 (801)
                         .++|++|++++|.+.+..+..+..+++|++|++++|+.. +.   .+..  ..+++|++|++++|.+++  .++ ..
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence               146666666666666666666777777777777777432 21   1111  356778888888887773  222 34


Q ss_pred             ccCCCCCCEEEcccccCcccCc-ccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCC
Q 044830          238 IGNLRDLKFLDLYVCYFDGQVP-ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL  316 (801)
Q Consensus       238 l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  316 (801)
                      +..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence            5678899999999999987765 45667899999999999998 6677666  8899999999999865 65 8889999


Q ss_pred             CEEEcccccccc
Q 044830          317 SLLELSRNQFVG  328 (801)
Q Consensus       317 ~~L~l~~n~~~~  328 (801)
                      ++|++++|++++
T Consensus       299 ~~L~L~~N~l~~  310 (312)
T 1wwl_A          299 GNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECTTCTTTC
T ss_pred             CEEeccCCCCCC
Confidence            999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=6.5e-23  Score=233.26  Aligned_cols=114  Identities=23%  Similarity=0.270  Sum_probs=59.8

Q ss_pred             CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830          219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA  298 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  298 (801)
                      .++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|++++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            3566666666665 4555443  56666666666665 2333   34566666666666553 333   44556666666


Q ss_pred             CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCC
Q 044830          299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD  350 (801)
Q Consensus       299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~  350 (801)
                      +|.+++ +|.   .+++|+.|++++|.+++ +|..  +++|++|++++|.++
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLA  154 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCC
Confidence            665553 232   34555555555555543 2221  244444455444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=8.5e-23  Score=210.03  Aligned_cols=216  Identities=21%  Similarity=0.226  Sum_probs=121.2

Q ss_pred             CCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCc
Q 044830           25 GDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS  104 (801)
Q Consensus        25 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~  104 (801)
                      .++|.|.|+.|.-. +.++.+++++++++. ++.  .+.  +++++|+|++|.++.. .+..|..+++|++|+|++|.++
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   74 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ   74 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence            58999999999632 456788999988863 443  332  5788888888888765 3446788888888888888887


Q ss_pred             cccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc
Q 044830          105 GIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG  184 (801)
Q Consensus       105 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~  184 (801)
                      +..+..|.++++|++|++++|.                             +....+..+..+  ++|++|++++|.+++
T Consensus        75 ~i~~~~~~~l~~L~~L~l~~n~-----------------------------l~~~~~~~~~~l--~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           75 TLPAGIFKELKNLETLWVTDNK-----------------------------LQALPIGVFDQL--VNLAELRLDRNQLKS  123 (270)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSC-----------------------------CCCCCTTTTTTC--SSCCEEECCSSCCCC
T ss_pred             eeChhhhcCCCCCCEEECCCCc-----------------------------CCcCCHhHcccc--cCCCEEECCCCccCe
Confidence            6655666777777777777762                             222222333444  455555555555554


Q ss_pred             CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccC
Q 044830          185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSN  264 (801)
Q Consensus       185 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  264 (801)
                      ..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            44444455555555555555222111001113344444444444444333333444444444444444444333333444


Q ss_pred             CCCCCEEEcCCCCC
Q 044830          265 LKQLTVLNLEDNQF  278 (801)
Q Consensus       265 l~~L~~L~L~~n~l  278 (801)
                      +++|+.|++++|.+
T Consensus       204 l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          204 LEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             ccCCCEEEecCCCe
Confidence            44444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.7e-24  Score=238.89  Aligned_cols=59  Identities=22%  Similarity=0.239  Sum_probs=33.8

Q ss_pred             CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830          267 QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV  327 (801)
Q Consensus       267 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  327 (801)
                      +|++|+|++|.+.+..|..|..+++|++|++++|.+.+..|  +..+++|++|++++|.++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~   93 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence            55566666665555555555556666666666665554443  555555666666555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=3.9e-26  Score=263.68  Aligned_cols=132  Identities=18%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCCCCEEEcccccCcccCccccc-CCCCCCEEEcCCC-CCccc-cCccccCCCCCcEeeccCeeeeeeCCccCc----C
Q 044830          240 NLRDLKFLDLYVCYFDGQVPASLS-NLKQLTVLNLEDN-QFSGE-FPDVFGNLSKLTRISLAHLNFTGQLPLSAF----N  312 (801)
Q Consensus       240 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~  312 (801)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+.++.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            445555555555555544444443 4555666666555 33221 223333556666666666655543332222    4


Q ss_pred             CCCCCEEEccccc--cccc-CCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCC
Q 044830          313 LTQLSLLELSRNQ--FVGQ-LPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN  374 (801)
Q Consensus       313 l~~L~~L~l~~n~--~~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n  374 (801)
                      +++|++|++++|.  +... ++... .+++|++|++++|...+.++..+..   +++|++|+++.+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~---~~~L~~L~l~~~  245 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGGY  245 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH---CTTCSEEECSBC
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc---CCcceEcccccc
Confidence            4566666666654  1100 00011 3456666666666322234444444   566666665544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.4e-22  Score=205.49  Aligned_cols=205  Identities=24%  Similarity=0.265  Sum_probs=128.2

Q ss_pred             CCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830          441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN  520 (801)
Q Consensus       441 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (801)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            344555555444 2332222  3455555555555544444455555555555555555544334445555555555555


Q ss_pred             CcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcc
Q 044830          521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDL  600 (801)
Q Consensus       521 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~  600 (801)
                      |++.+..+..+..+++|++|++++|++.+..+..+    ..+++|++|++++|++++. |...+.               
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~-~~~~~~---------------  154 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQSL-PKGVFD---------------  154 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCC-CTTTTT---------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh----CcCcCCCEEECCCCcCCcc-CHhHcc---------------
Confidence            55555555555555666666666666554433333    5667777777777776633 322111               


Q ss_pred             cccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCC
Q 044830          601 DYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTAL  680 (801)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  680 (801)
                                                 .++.|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|
T Consensus       155 ---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          155 ---------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             ---------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ---------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence                                       14567888888888887777788899999999999999998777778999999


Q ss_pred             CeEeCcCCcceecCC
Q 044830          681 SVLNLSFNQLVGPIP  695 (801)
Q Consensus       681 ~~L~ls~N~l~g~iP  695 (801)
                      +.|++++|++.+..+
T Consensus       208 ~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          208 KMLQLQENPWDCTCN  222 (270)
T ss_dssp             CEEECCSSCBCCSSS
T ss_pred             CEEEecCCCeeCCCc
Confidence            999999999887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.2e-22  Score=204.96  Aligned_cols=222  Identities=16%  Similarity=0.193  Sum_probs=162.8

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      .+..+++..+.+.+.  ..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+.+.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            344455555555433  234566777777777777763 22 366777777777777777652  366777778888888


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|.+++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|++++..+..+    ..+++|+.|++++|++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF----DKLTNLTELDLSYNQL  169 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh----ccCccCCEEECCCCCc
Confidence            887776666667777888888888888877777777778888888888887775544333    6778888888888888


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      ++..+. .+.                                          .++.|+.|++++|++++..|..++.+++
T Consensus       170 ~~~~~~-~~~------------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          170 QSLPEG-VFD------------------------------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             CCCCTT-TTT------------------------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CccCHH-Hhc------------------------------------------CCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            754442 121                                          1456789999999999888888899999


Q ss_pred             CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830          656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG  697 (801)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  697 (801)
                      |+.|+|++|.+.+.       ++.|+.++++.|.++|.||..
T Consensus       207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            99999999998865       446889999999999999964

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.2e-22  Score=205.00  Aligned_cols=208  Identities=19%  Similarity=0.239  Sum_probs=164.9

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +++|+.|++++|.++. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            5677788888887763 2 3477788888888888888753  3677888888888888888877777788888888888


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      +++|++++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|++++..+..+    ..+++|+.|++++|
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF----DKLTQLKDLRLYQN  191 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh----cCCccCCEEECCCC
Confidence            88888887777778888888899998888888877778888889999999988886554433    77889999999999


Q ss_pred             cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830          574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL  653 (801)
Q Consensus       574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  653 (801)
                      ++++..|.. +.                                          .++.|+.|++++|.+.+.       +
T Consensus       192 ~l~~~~~~~-~~------------------------------------------~l~~L~~L~l~~N~~~~~-------~  221 (272)
T 3rfs_A          192 QLKSVPDGV-FD------------------------------------------RLTSLQYIWLHDNPWDCT-------C  221 (272)
T ss_dssp             CCSCCCTTT-TT------------------------------------------TCTTCCEEECCSSCBCCC-------T
T ss_pred             cCCccCHHH-Hh------------------------------------------CCcCCCEEEccCCCcccc-------C
Confidence            988655522 22                                          145678999999988754       4


Q ss_pred             ccCceEeCcCccccccCCccccCCCC
Q 044830          654 SSLKLLNFSHNILRGEIPVELTSLTA  679 (801)
Q Consensus       654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~  679 (801)
                      ++|+.|+++.|.++|.+|.+++.+..
T Consensus       222 ~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cHHHHHHHHHHhCCCcccCcccccCC
Confidence            47889999999999999998887664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.2e-23  Score=226.29  Aligned_cols=242  Identities=17%  Similarity=0.195  Sum_probs=167.1

Q ss_pred             ccccEEEecCCCCCCCCc----cccccCC-CCCEEECcCCCCcccCCccccCC-----CCCCEEeCCCCcccccCCcc--
Q 044830          415 SRIRFLSVSDNKLTGEFP----SSICNLS-TIEYLNLSNNSLSGMIPQCLANF-----DSLSLLDLRKNQFRGSIPQI--  482 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~--  482 (801)
                      ++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            457788888888776655    5666777 78888888888877666666554     78888888888887665553  


Q ss_pred             --ccCC-CCccEEECCCCcCCCCCCccc----cC-CCCCcEEeCCCCcCCCCcc----hhccCCC-CCCEEEccCCcCcc
Q 044830          483 --FSKC-YDLVALNLNDNELEGKLPPSL----AN-CGDLEVLDVGNNKINDAFP----YWTATLP-RLQVLVLRSNSFHG  549 (801)
Q Consensus       483 --~~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~  549 (801)
                        +..+ ++|++|++++|.+++..+..+    .. +++|++|++++|++.+..+    ..+..++ +|++|+|++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3334 788888888888876655443    33 3688888888888875433    3345555 88888888888876


Q ss_pred             cCCCCCCCCCCCC-CCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhh
Q 044830          550 PIYNNVPSIKRPF-PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERV  628 (801)
Q Consensus       550 ~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (801)
                      ..+..+...+..+ ++|+.|||++|++++.....+...+..                                      .
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--------------------------------------~  223 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--------------------------------------I  223 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------------------------S
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------------------------C
Confidence            5543332223445 488888888888876444332222211                                      1


Q ss_pred             cccceEEEccCCeeeeecc----ccccccccCceEeCcCcccccc-------CCccccCCCCCCeEeCcCCcceecC
Q 044830          629 LNIFTTIDLSNNRFEGMIP----KEVGKLSSLKLLNFSHNILRGE-------IPVELTSLTALSVLNLSFNQLVGPI  694 (801)
Q Consensus       629 l~~L~~LdLs~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~L~ls~N~l~g~i  694 (801)
                      .+.|+.|||++|++++..+    ..+..+++|+.|+|++|.+.+.       ++..+..+++|+.||+++|++.+..
T Consensus       224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            2468889999998887544    4456778899999999985433       3456778888999999999887653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=2.2e-21  Score=200.36  Aligned_cols=208  Identities=24%  Similarity=0.231  Sum_probs=119.8

Q ss_pred             CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830           66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE  145 (801)
Q Consensus        66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~  145 (801)
                      ++|++|+|++|.++.. .+..|..+++|++|++++|.+++..+..|.++++|++|++++|                    
T Consensus        28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--------------------   86 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--------------------   86 (276)
T ss_dssp             TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC--------------------
T ss_pred             CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC--------------------
Confidence            3566666666666543 2334666666666666666666555555666666666666655                    


Q ss_pred             CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEc
Q 044830          146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDL  225 (801)
Q Consensus       146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L  225 (801)
                               .+.+..+..+..+  ++|++|++++|.+.+..+..+..+++|++|++++|                     
T Consensus        87 ---------~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------  134 (276)
T 2z62_A           87 ---------PIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---------------------  134 (276)
T ss_dssp             ---------CCCEECTTTTTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS---------------------
T ss_pred             ---------ccCccChhhhcCC--ccccEEECCCCCccccCchhcccCCCCCEEECcCC---------------------
Confidence                     2333333444444  55555555555555444434455555555555554                     


Q ss_pred             cCccCcc-cCcccccCCCCCCEEEcccccCcccCcccccCCCCCC----EEEcCCCCCccccCccccCCCCCcEeeccCe
Q 044830          226 SITKFSG-KIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT----VLNLEDNQFSGEFPDVFGNLSKLTRISLAHL  300 (801)
Q Consensus       226 s~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  300 (801)
                         .+++ .+|..+..+++|++|++++|.+++..+..+..+++|+    +|++++|.+.+..+..+. ..+|++|++++|
T Consensus       135 ---~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n  210 (276)
T 2z62_A          135 ---LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTN  210 (276)
T ss_dssp             ---CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSS
T ss_pred             ---ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCC
Confidence               3332 2355566666666666666666655555555444444    667777776654444443 336777777777


Q ss_pred             eeeeeCCccCcCCCCCCEEEcccccccccC
Q 044830          301 NFTGQLPLSAFNLTQLSLLELSRNQFVGQL  330 (801)
Q Consensus       301 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~  330 (801)
                      .+++..+..+..+++|++|++++|++.+..
T Consensus       211 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ceeecCHhHhcccccccEEEccCCcccccC
Confidence            777554445566777777777777776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2e-21  Score=201.47  Aligned_cols=205  Identities=21%  Similarity=0.250  Sum_probs=125.0

Q ss_pred             cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCc
Q 044830          435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE  514 (801)
Q Consensus       435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  514 (801)
                      +.+++++++++++++.++ .+|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            344555566666665555 2333222  455666666666655555556666666666666666553322  14556666


Q ss_pred             EEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccC
Q 044830          515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGD  594 (801)
Q Consensus       515 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~  594 (801)
                      +|++++|++. .+|..+..+++|++|++++|++++..+..+    ..+++|++|+|++|++++..+ ..|.         
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----~~l~~L~~L~L~~N~l~~~~~-~~~~---------  145 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPP-GLLT---------  145 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT----TTCTTCCEEECTTSCCCCCCT-TTTT---------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH----cCCCCCCEEECCCCCCCccCh-hhcc---------
Confidence            6666666664 334455566666666666666654433333    566667777777777663322 2221         


Q ss_pred             CCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccc
Q 044830          595 NDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL  674 (801)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  674 (801)
                                                       .++.|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus       146 ---------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          146 ---------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             ---------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ---------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                                             1345677788888877666666777888888888888887 677777


Q ss_pred             cCCCCCCeEeCcCCcceec
Q 044830          675 TSLTALSVLNLSFNQLVGP  693 (801)
Q Consensus       675 ~~l~~L~~L~ls~N~l~g~  693 (801)
                      ..+.+|+.+++++|++...
T Consensus       192 ~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTCCCSEEECCSCCBCCS
T ss_pred             cccccCCeEEeCCCCccCc
Confidence            7777888888888887653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.9e-23  Score=222.66  Aligned_cols=212  Identities=22%  Similarity=0.209  Sum_probs=140.3

Q ss_pred             CCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccC--CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCC
Q 044830           25 GDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLL--HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSY  102 (801)
Q Consensus        25 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~  102 (801)
                      .-|.+|.++.|+.  ..++.+|++++.+.+.     .+..+  ++++.|++++|.+.+. .+. +..+++|++|++++|.
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCE
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccCCC
Confidence            3466899998863  4578899999887632     55666  8899999999988765 333 6678999999999998


Q ss_pred             Cccc-cccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCc-cCCCC-CchhhhccCCCCccEEEccC
Q 044830          103 FSGI-VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNV-QMFSV-VPSSLLNLSSASLISLSLGN  179 (801)
Q Consensus       103 i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~-~~~~~-~~~~l~~l~~~~L~~L~L~~  179 (801)
                      +++. +|..+..+++|++|++++|.  +.   ...+..+..+++|++|++++| .+++. .+..+..+  ++|++|++++
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~--l~---~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~--~~L~~L~l~~  177 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLR--LS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC--SRLDELNLSW  177 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCB--CC---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC--TTCCEEECCC
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcc--cC---HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC--CCCCEEcCCC
Confidence            8765 77778888999999998883  22   345667778888888888888 56553 55567777  7788888888


Q ss_pred             C-cCccC-CCccCCCCC-CCCEEeccCCC--CCccCCCCCC-CCCCCCEEEccCcc-CcccCcccccCCCCCCEEEcccc
Q 044830          180 C-FLRGE-FPIDIFHFP-FLRQLTLSDNG--LLTGNLPTSN-WSSPLRILDLSITK-FSGKIPDTIGNLRDLKFLDLYVC  252 (801)
Q Consensus       180 n-~l~~~-~~~~l~~l~-~L~~L~Ls~n~--~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n  252 (801)
                      | .+++. ++..+..++ +|++|++++|.  +....++... .+++|++|++++|. +++..+..+.++++|++|++++|
T Consensus       178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            7 76653 344456666 77777776662  1112222222 34444444444444 33333444444444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5.1e-23  Score=221.33  Aligned_cols=218  Identities=20%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             cccEEEecCCCCCCCCccccccC-----CCCCEEECcCCCCcccCCccc----cCC-CCCCEEeCCCCcccccCCccc--
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNL-----STIEYLNLSNNSLSGMIPQCL----ANF-DSLSLLDLRKNQFRGSIPQIF--  483 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~Ls~n~i~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~~--  483 (801)
                      +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            45555555555554444444443     556666666666554444322    222 556666666666554433332  


Q ss_pred             --cC-CCCccEEECCCCcCCCCCC----ccccCCC-CCcEEeCCCCcCCCCcchhc----cCC-CCCCEEEccCCcCccc
Q 044830          484 --SK-CYDLVALNLNDNELEGKLP----PSLANCG-DLEVLDVGNNKINDAFPYWT----ATL-PRLQVLVLRSNSFHGP  550 (801)
Q Consensus       484 --~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~i~~~~~~~~----~~l-~~L~~L~L~~N~l~~~  550 (801)
                        .. .++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+    ..+ ++|++|+|++|++.+.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence              22 2456666666666553222    2233333 56666666666655544332    233 3666666666665543


Q ss_pred             CCCCCCCCCCC-CCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhc
Q 044830          551 IYNNVPSIKRP-FPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL  629 (801)
Q Consensus       551 ~~~~~~~~~~~-l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  629 (801)
                      ....++..+.. .++|+.|||++|++++..+..+..-+                                       ..+
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~---------------------------------------~~l  252 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK---------------------------------------DSL  252 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT---------------------------------------TTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH---------------------------------------hcC
Confidence            22212211222 24666666666666654443221110                                       113


Q ss_pred             ccceEEEccCCeeeee-------ccccccccccCceEeCcCccccccCCc
Q 044830          630 NIFTTIDLSNNRFEGM-------IPKEVGKLSSLKLLNFSHNILRGEIPV  672 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~ip~  672 (801)
                      +.|+.|+|++|.+.+.       ++..+.++++|+.||+++|.+.+..|.
T Consensus       253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            4466667776663322       334566667777777777777655443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.3e-20  Score=195.21  Aligned_cols=150  Identities=23%  Similarity=0.288  Sum_probs=75.3

Q ss_pred             eeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830          396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF  475 (801)
Q Consensus       396 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l  475 (801)
                      ++.++++++.++.++....++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|++++|.+
T Consensus        12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCC
T ss_pred             ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcC
Confidence            33444444444444433344555666666665555555555555666666666655543221  4455555555555555


Q ss_pred             cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830          476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~  548 (801)
                      + .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..+..+..+++|+.|+|++|+++
T Consensus        90 ~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            4 34444455555555555555555444444555555555555555554444444444444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=6.2e-22  Score=208.04  Aligned_cols=208  Identities=20%  Similarity=0.214  Sum_probs=115.3

Q ss_pred             CCCCEEECcCCCCcccCCccc--cCCCCCCEEeCCCCcccccCC----ccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830          439 STIEYLNLSNNSLSGMIPQCL--ANFDSLSLLDLRKNQFRGSIP----QIFSKCYDLVALNLNDNELEGKLPPSLANCGD  512 (801)
Q Consensus       439 ~~L~~L~Ls~n~i~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  512 (801)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+.++++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555554444444  445555555555555544332    22234555555555555555555555555555


Q ss_pred             CcEEeCCCCcCCCC---c-chhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhh
Q 044830          513 LEVLDVGNNKINDA---F-PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLK  588 (801)
Q Consensus       513 L~~L~Ls~n~i~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~  588 (801)
                      |++|++++|++.+.   . +..+..+++|++|++++|+++.... .....+..+++|++|||++|++++.+|..+ ..+ 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~-  247 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-VCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRC-  247 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-HHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSC-
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-HHHHHHhcCCCCCEEECCCCCCCccchhhH-Hhc-
Confidence            55555555554431   1 1122455566666666665542110 000011345667777777777766555321 000 


Q ss_pred             hhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccc
Q 044830          589 AMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG  668 (801)
Q Consensus       589 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  668 (801)
                                                            ..++.|+.|+|++|+++ .+|..+.  ++|+.|+|++|++++
T Consensus       248 --------------------------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          248 --------------------------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             --------------------------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             --------------------------------------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence                                                  00245777888888887 5566664  688888888888886


Q ss_pred             cCCccccCCCCCCeEeCcCCccee
Q 044830          669 EIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       669 ~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                      . |. +..+++|+.|++++|+++.
T Consensus       287 ~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          287 A-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             C-ch-hhhCCCccEEECcCCCCCC
Confidence            4 33 5777888888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.8e-20  Score=190.33  Aligned_cols=182  Identities=20%  Similarity=0.230  Sum_probs=165.2

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                      ..+.++++++.++.+|....++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            45678888888888887777899999999999998888889999999999999999999888889999999999999999


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN  554 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  554 (801)
                      +++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|+|++|++.+..+..
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence            99888888999999999999999999777777899999999999999999988888999999999999999999766544


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCccCc
Q 044830          555 VPSIKRPFPELRIIDISRNGFTGLLP  580 (801)
Q Consensus       555 ~~~~~~~l~~L~~LdLs~N~l~~~~p  580 (801)
                      +    ..+++|+.|++++|++.+...
T Consensus       175 ~----~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          175 F----DRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             T----TTCTTCCEEECCSCCBCTTST
T ss_pred             H----hCCCCCCEEEeeCCceeCCcc
Confidence            4    789999999999999987633

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=7.3e-21  Score=191.80  Aligned_cols=206  Identities=18%  Similarity=0.247  Sum_probs=120.5

Q ss_pred             CCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCC-CcccCCccccCCCCCCEEeCCC-CcccccCCccc
Q 044830          406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS-LSGMIPQCLANFDSLSLLDLRK-NQFRGSIPQIF  483 (801)
Q Consensus       406 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~  483 (801)
                      ++.+|. ..+++++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|
T Consensus        23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            444443 34455555555555554444445555555555555554 5444444455555555555554 55554444445


Q ss_pred             cCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCC---EEEccCC-cCcccCCCCCCCCC
Q 044830          484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ---VLVLRSN-SFHGPIYNNVPSIK  559 (801)
Q Consensus       484 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~  559 (801)
                      ..+++|++|++++|++++ +|.                         +..+++|+   +|++++| .+.+..+..+    
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~----  151 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAF----  151 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTT----
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-------------------------cccccccccccEEECCCCcchhhcCcccc----
Confidence            555555555555555443 332                         44444444   5555555 5544333222    


Q ss_pred             CCCCCCc-EEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEcc
Q 044830          560 RPFPELR-IIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLS  638 (801)
Q Consensus       560 ~~l~~L~-~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  638 (801)
                      ..+++|+ .|++++|+++ .+|...|.                                           .+.|+.|+|+
T Consensus       152 ~~l~~L~~~L~l~~n~l~-~i~~~~~~-------------------------------------------~~~L~~L~L~  187 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFT-SVQGYAFN-------------------------------------------GTKLDAVYLN  187 (239)
T ss_dssp             TTTBSSEEEEECCSCCCC-EECTTTTT-------------------------------------------TCEEEEEECT
T ss_pred             cchhcceeEEEcCCCCCc-ccCHhhcC-------------------------------------------CCCCCEEEcC
Confidence            5566777 7777777776 44433211                                           1357889999


Q ss_pred             CCe-eeeecccccccc-ccCceEeCcCccccccCCccccCCCCCCeEeCcCCc
Q 044830          639 NNR-FEGMIPKEVGKL-SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ  689 (801)
Q Consensus       639 ~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  689 (801)
                      +|+ +++..+..|..+ ++|+.|++++|++++ +|..  .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            995 887777888888 999999999999985 4443  67788888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=4.3e-21  Score=194.95  Aligned_cols=212  Identities=19%  Similarity=0.195  Sum_probs=126.3

Q ss_pred             CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830          440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      ..++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3455666666665 3343332  355666666666655555555555555555555555555544445555555555555


Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830          520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID  599 (801)
Q Consensus       520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~  599 (801)
                      +|++.+..+..+                            ..+++|++|+|++|++++..+ ..|.              
T Consensus        92 ~n~l~~~~~~~~----------------------------~~l~~L~~L~L~~N~l~~~~~-~~~~--------------  128 (251)
T 3m19_A           92 NNQLASLPLGVF----------------------------DHLTQLDKLYLGGNQLKSLPS-GVFD--------------  128 (251)
T ss_dssp             TSCCCCCCTTTT----------------------------TTCTTCCEEECCSSCCCCCCT-TTTT--------------
T ss_pred             CCcccccChhHh----------------------------cccCCCCEEEcCCCcCCCcCh-hHhc--------------
Confidence            555544444333                            445566666666666653322 2111              


Q ss_pred             ccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCC
Q 044830          600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA  679 (801)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  679 (801)
                                                  .++.|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..+..+++
T Consensus       129 ----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          129 ----------------------------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             ----------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ----------------------------cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence                                        1345778888888888777778889999999999999999888888999999


Q ss_pred             CCeEeCcCCcceecCCCCCCCCCc------CcCcCCCCCCCCCCCCCCCCCCC
Q 044830          680 LSVLNLSFNQLVGPIPQGKQFDSF------QNDSFIGNLGLCGFALTQQCSNY  726 (801)
Q Consensus       680 L~~L~ls~N~l~g~iP~~~~~~~~------~~~~~~gn~~lcg~~l~~~c~~~  726 (801)
                      |+.|++++|++++..+.-..+..+      ......|+ .+|+.|....|...
T Consensus       181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            999999999998864432111110      11122344 36777767778654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.6e-22  Score=219.78  Aligned_cols=186  Identities=21%  Similarity=0.202  Sum_probs=91.0

Q ss_pred             cCCCCCCEEeCCCccCCC----CCchhhhccCCCCccEEEccCCcCccCCCccC----CCC---------CCCCEEeccC
Q 044830          141 KNLTELRYLLLDNVQMFS----VVPSSLLNLSSASLISLSLGNCFLRGEFPIDI----FHF---------PFLRQLTLSD  203 (801)
Q Consensus       141 ~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~Ls~  203 (801)
                      ..+++|++|++++|.+..    .++..+..+  ++|++|+|++|.+++..+..+    ..+         ++|++|++++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH--TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHC--TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhC--CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            455555555555555544    234444444  555555555555543222211    122         5666666666


Q ss_pred             CCCCccCCCC---CC-CCCCCCEEEccCccCcc-----cCcccccCCCCCCEEEcccccCc----ccCcccccCCCCCCE
Q 044830          204 NGLLTGNLPT---SN-WSSPLRILDLSITKFSG-----KIPDTIGNLRDLKFLDLYVCYFD----GQVPASLSNLKQLTV  270 (801)
Q Consensus       204 n~~~~~~~~~---~~-~~~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~  270 (801)
                      |.+....++.   .+ .+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..+|..+..+++|++
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            6433233331   11 34455555555555541     12224555556666666666554    344555555555666


Q ss_pred             EEcCCCCCccc----cCcccc--CCCCCcEeeccCeeeee----eCCccC-cCCCCCCEEEcccccccc
Q 044830          271 LNLEDNQFSGE----FPDVFG--NLSKLTRISLAHLNFTG----QLPLSA-FNLTQLSLLELSRNQFVG  328 (801)
Q Consensus       271 L~L~~n~l~~~----~p~~~~--~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~l~~n~~~~  328 (801)
                      |+|++|.+++.    ++..+.  .+++|++|++++|.+++    .+|..+ .++++|++|++++|.+++
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            66666655543    333332  25555555555555554    244444 334555555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.5e-22  Score=220.04  Aligned_cols=239  Identities=17%  Similarity=0.197  Sum_probs=176.3

Q ss_pred             cccccEEEecCCCCCCCCc----cccccCCCCCEEECcCCC---CcccCCccc-------cCCCCCCEEeCCCCcccc--
Q 044830          414 SSRIRFLSVSDNKLTGEFP----SSICNLSTIEYLNLSNNS---LSGMIPQCL-------ANFDSLSLLDLRKNQFRG--  477 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~---i~~~~~~~l-------~~l~~L~~L~L~~n~l~~--  477 (801)
                      +++|+.|++++|.+++..+    ..+..+++|++|++++|.   +++.+|..+       ..+++|++|+|++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4678888888888876533    346678889999998864   444555444       678899999999998886  


Q ss_pred             --cCCccccCCCCccEEECCCCcCCCCCCcc----ccCC---------CCCcEEeCCCCcCC-CCcc---hhccCCCCCC
Q 044830          478 --SIPQIFSKCYDLVALNLNDNELEGKLPPS----LANC---------GDLEVLDVGNNKIN-DAFP---YWTATLPRLQ  538 (801)
Q Consensus       478 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~Ls~n~i~-~~~~---~~~~~l~~L~  538 (801)
                        .+|..+..+++|++|+|++|.+++..+..    +..+         ++|++|++++|++. +.++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              46677788889999999999886443333    3333         88999999999987 3344   3566788999


Q ss_pred             EEEccCCcCcccCCCC-CCCCCCCCCCCcEEEccCCcCCc----cCcHHHHhhhhhhhccCCCCCcccccccCCCCceee
Q 044830          539 VLVLRSNSFHGPIYNN-VPSIKRPFPELRIIDISRNGFTG----LLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYS  613 (801)
Q Consensus       539 ~L~L~~N~l~~~~~~~-~~~~~~~l~~L~~LdLs~N~l~~----~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  613 (801)
                      +|++++|++....... .+..+..+++|+.|+|++|.++.    .+|..                               
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-------------------------------  239 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-------------------------------  239 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-------------------------------
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-------------------------------
Confidence            9999999887321000 01123678899999999998862    23321                               


Q ss_pred             EEEEeccchhhhhhhcccceEEEccCCeeeee----ccccc--cccccCceEeCcCccccc----cCCccc-cCCCCCCe
Q 044830          614 MILTYKGVDLEMERVLNIFTTIDLSNNRFEGM----IPKEV--GKLSSLKLLNFSHNILRG----EIPVEL-TSLTALSV  682 (801)
Q Consensus       614 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~  682 (801)
                                  ...++.|+.|+|++|++++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ .++++|++
T Consensus       240 ------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          240 ------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             ------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence                        11246788999999999876    56777  348999999999999998    588877 66899999


Q ss_pred             EeCcCCcceecCC
Q 044830          683 LNLSFNQLVGPIP  695 (801)
Q Consensus       683 L~ls~N~l~g~iP  695 (801)
                      |++++|++++..|
T Consensus       308 L~l~~N~l~~~~~  320 (386)
T 2ca6_A          308 LELNGNRFSEEDD  320 (386)
T ss_dssp             EECTTSBSCTTSH
T ss_pred             EEccCCcCCcchh
Confidence            9999999987764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.8e-20  Score=194.88  Aligned_cols=147  Identities=21%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            3455555555555543 22 34555555555555555553322  55555555555555555432  2355555555555


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      +++|.+++. + .+..+++|++|++++|++.+..+  +..+++|+.|++++|++.+..+      +..+++|+.|++++|
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDN  183 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCC
Confidence            555555432 2 24555555555555555544332  4444555555555554443211      134444444444444


Q ss_pred             cCC
Q 044830          574 GFT  576 (801)
Q Consensus       574 ~l~  576 (801)
                      +++
T Consensus       184 ~l~  186 (308)
T 1h6u_A          184 KIS  186 (308)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.9e-20  Score=196.16  Aligned_cols=211  Identities=21%  Similarity=0.337  Sum_probs=175.7

Q ss_pred             ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCC
Q 044830          417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND  496 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  496 (801)
                      +..+.+..+.+.+.+  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++
T Consensus        21 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~   94 (308)
T 1h6u_A           21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (308)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence            333445555555432  35578899999999999985 44 58899999999999999986544  89999999999999


Q ss_pred             CcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830          497 NELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT  576 (801)
Q Consensus       497 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  576 (801)
                      |.+++.  ..+..+++|++|++++|++.+..+  +..+++|++|++++|++.+..+      +..+++|+.|++++|+++
T Consensus        95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A           95 NPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC
T ss_pred             CcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCC
Confidence            999864  468999999999999999987543  8899999999999999986543      378999999999999998


Q ss_pred             ccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccC
Q 044830          577 GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL  656 (801)
Q Consensus       577 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  656 (801)
                      +..+   +.                                          .++.|+.|++++|++++..+  +..+++|
T Consensus       165 ~~~~---l~------------------------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L  197 (308)
T 1h6u_A          165 DLTP---LA------------------------------------------NLSKLTTLKADDNKISDISP--LASLPNL  197 (308)
T ss_dssp             CCGG---GT------------------------------------------TCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             CChh---hc------------------------------------------CCCCCCEEECCCCccCcChh--hcCCCCC
Confidence            5333   21                                          14578999999999997655  8999999


Q ss_pred             ceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830          657 KLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       657 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                      +.|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            999999999997664  8999999999999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=203.61  Aligned_cols=230  Identities=20%  Similarity=0.219  Sum_probs=176.1

Q ss_pred             CCCCEEECcCCCCcccC-Cc--cccCCCCCCEEeCCCCcccccCCccc--cCCCCccEEECCCCcCCCCCC----ccccC
Q 044830          439 STIEYLNLSNNSLSGMI-PQ--CLANFDSLSLLDLRKNQFRGSIPQIF--SKCYDLVALNLNDNELEGKLP----PSLAN  509 (801)
Q Consensus       439 ~~L~~L~Ls~n~i~~~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~  509 (801)
                      ..++.+.+.++.++... ..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            35777888887775321 11  12234679999999999999999888  899999999999999997655    34567


Q ss_pred             CCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhh
Q 044830          510 CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA  589 (801)
Q Consensus       510 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~  589 (801)
                      +++|++|++++|++.+..+..+..+++|++|+|++|++.+......+.....+++|++|+|++|+++. +|.... .   
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~---  218 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA-A---  218 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-H---
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-H---
Confidence            99999999999999999999999999999999999998653111111123678999999999999973 232110 0   


Q ss_pred             hhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc---ccCceEeCcCccc
Q 044830          590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL---SSLKLLNFSHNIL  666 (801)
Q Consensus       590 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l  666 (801)
                                                         ....++.|++|||++|++++.+|..++.+   ++|+.|+|++|++
T Consensus       219 -----------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          219 -----------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             -----------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred             -----------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence                                               11224678999999999999889888887   6999999999999


Q ss_pred             cccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCC
Q 044830          667 RGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNL  712 (801)
Q Consensus       667 ~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~  712 (801)
                      + .+|..+.  ++|++|++++|++++. |.-..+..+......||+
T Consensus       264 ~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          264 E-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             C-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred             C-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence            9 7788775  8999999999999973 332344555555556664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2e-20  Score=200.00  Aligned_cols=244  Identities=17%  Similarity=0.147  Sum_probs=192.6

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC-ccccCCCCCCE-EeCCC
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP-QCLANFDSLSL-LDLRK  472 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~-L~L~~  472 (801)
                      .-+.++++++.++.+|...++++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+..
T Consensus        10 ~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            45678899999999987778899999999999996656689999999999999999876554 57888988775 66777


Q ss_pred             CcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC-CcCCCCcchhccCCC-CCCEEEccCCcCccc
Q 044830          473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN-NKINDAFPYWTATLP-RLQVLVLRSNSFHGP  550 (801)
Q Consensus       473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~  550 (801)
                      |+++...|..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+..+..+. .++.|++++|+++..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            999988899999999999999999999977777777778889999965 577776667777764 688999999999854


Q ss_pred             CCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcc
Q 044830          551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLN  630 (801)
Q Consensus       551 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  630 (801)
                      .+..     ....+|+.+++++|+..+.+|...|..                                          ++
T Consensus       170 ~~~~-----f~~~~L~~l~l~~~n~l~~i~~~~f~~------------------------------------------l~  202 (350)
T 4ay9_X          170 HNSA-----FNGTQLDELNLSDNNNLEELPNDVFHG------------------------------------------AS  202 (350)
T ss_dssp             CTTS-----STTEEEEEEECTTCTTCCCCCTTTTTT------------------------------------------EE
T ss_pred             Chhh-----ccccchhHHhhccCCcccCCCHHHhcc------------------------------------------Cc
Confidence            3322     456789999998766556788655433                                          45


Q ss_pred             cceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCc
Q 044830          631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ  689 (801)
Q Consensus       631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  689 (801)
                      .|+.||||+|+|+...+..+.+++   .|.+.++.-...+| .+.++++|+.++++++.
T Consensus       203 ~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          203 GPVILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             ccchhhcCCCCcCccChhhhccch---HhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            679999999999966555555544   45544444344677 48899999999998753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.5e-21  Score=207.96  Aligned_cols=254  Identities=16%  Similarity=0.196  Sum_probs=149.0

Q ss_pred             CCCeeeCCCCCCCCCcccccccCC--CCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCC
Q 044830           67 HLQKLNLACNDFNGTKISSNFGQF--TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLT  144 (801)
Q Consensus        67 ~L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~  144 (801)
                      .++.++++++.+.    +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.  +  ....++..+..++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~--l--~~~~~~~~~~~~~  118 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV--I--EVSTLHGILSQCS  118 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE--E--CHHHHHHHHTTBC
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC--c--CHHHHHHHHhhCC
Confidence            4789999999875    4457777  8999999999999877665 6679999999999883  2  1223677788888


Q ss_pred             CCCEEeCCCccCCCCCchhhhccCCCCccEEEccCC-cCccC-CCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCE
Q 044830          145 ELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNC-FLRGE-FPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI  222 (801)
Q Consensus       145 ~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~  222 (801)
                      +|++|++++|.+.+..+..+..+  ++|++|++++| .+++. ++..+..+++|++|++++|.                 
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----------------  179 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------  179 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTC--TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------
T ss_pred             CCCEEeCcCcccCHHHHHHHhcC--CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------
Confidence            88888888888877777777777  77888888877 55542 34445566666666666661                 


Q ss_pred             EEccCccCccc-CcccccCCC-CCCEEEcccc--cCc-ccCcccccCCCCCCEEEcCCCC-CccccCccccCCCCCcEee
Q 044830          223 LDLSITKFSGK-IPDTIGNLR-DLKFLDLYVC--YFD-GQVPASLSNLKQLTVLNLEDNQ-FSGEFPDVFGNLSKLTRIS  296 (801)
Q Consensus       223 L~Ls~n~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~  296 (801)
                            .+++. ++..+..++ +|++|++++|  .++ +.++..+.++++|++|++++|. +++..+..+..+++|++|+
T Consensus       180 ------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          180 ------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             ------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence                  23221 233344444 4444444444  222 2233334444455555555554 3334444444455555555


Q ss_pred             ccCee-eeeeCCccCcCCCCCCEEEcccccccccCCCCC-CC-CCCCEEEccCCcCCcccchhhc
Q 044830          297 LAHLN-FTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SC-LPLSHLKLGGNFLDGRIPSWLF  358 (801)
Q Consensus       297 L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~L~L~~n~l~~~~~~~~~  358 (801)
                      +++|. +.......+.++++|++|++++| +..   ..+ .+ ..++.|++++|.+++..|..++
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            55542 11111113444555555555555 111   011 11 2245555566666655555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=3.8e-20  Score=186.52  Aligned_cols=195  Identities=18%  Similarity=0.179  Sum_probs=144.2

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCccEEECCCCc-CCCCCCccccCCCCCcEEeCCC-CcCCCCcchhccCCCCCCEEE
Q 044830          464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE-LEGKLPPSLANCGDLEVLDVGN-NKINDAFPYWTATLPRLQVLV  541 (801)
Q Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~  541 (801)
                      +|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |++.+..+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56677777777766555566777777777777775 6655555777778888888887 788777777788888899999


Q ss_pred             ccCCcCcccCCCCCCCCCCCCCCCc---EEEccCC-cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEE
Q 044830          542 LRSNSFHGPIYNNVPSIKRPFPELR---IIDISRN-GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILT  617 (801)
Q Consensus       542 L~~N~l~~~~~~~~~~~~~~l~~L~---~LdLs~N-~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (801)
                      +++|++++ +|.     +..+++|+   +|++++| ++++..+ ..|.                                
T Consensus       112 l~~n~l~~-lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~--------------------------------  152 (239)
T 2xwt_C          112 IFNTGLKM-FPD-----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQ--------------------------------  152 (239)
T ss_dssp             EEEECCCS-CCC-----CTTCCBCCSEEEEEEESCTTCCEECT-TTTT--------------------------------
T ss_pred             CCCCCCcc-ccc-----cccccccccccEEECCCCcchhhcCc-cccc--------------------------------
Confidence            99998876 332     36677777   9999999 8874433 2222                                


Q ss_pred             eccchhhhhhhcccce-EEEccCCeeeeeccccccccccCceEeCcCcc-ccccCCccccCC-CCCCeEeCcCCcceecC
Q 044830          618 YKGVDLEMERVLNIFT-TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNI-LRGEIPVELTSL-TALSVLNLSFNQLVGPI  694 (801)
Q Consensus       618 ~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~ls~N~l~g~i  694 (801)
                                .++.|+ .|++++|+++...+..+.. ++|+.|+|++|+ +++..+..|..+ ++|+.|++++|++++ +
T Consensus       153 ----------~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l  220 (239)
T 2xwt_C          153 ----------GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L  220 (239)
T ss_dssp             ----------TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred             ----------chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence                      245688 9999999999444444544 899999999995 998778889999 999999999999984 6


Q ss_pred             CCCCCCCCcCcCcCCC
Q 044830          695 PQGKQFDSFQNDSFIG  710 (801)
Q Consensus       695 P~~~~~~~~~~~~~~g  710 (801)
                      |.. .|..+......+
T Consensus       221 ~~~-~~~~L~~L~l~~  235 (239)
T 2xwt_C          221 PSK-GLEHLKELIARN  235 (239)
T ss_dssp             CCT-TCTTCSEEECTT
T ss_pred             Chh-HhccCceeeccC
Confidence            654 444444433333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=178.99  Aligned_cols=149  Identities=21%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830          397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR  476 (801)
Q Consensus       397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  476 (801)
                      +.++++++.++.++....+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            45556666655555544555555555555555444444455555555555555555444444445555555555555555


Q ss_pred             ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC
Q 044830          477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN  545 (801)
Q Consensus       477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N  545 (801)
                      +..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            443344444455555555555554433333444444444444444444433333334444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=178.86  Aligned_cols=129  Identities=25%  Similarity=0.298  Sum_probs=65.4

Q ss_pred             eeeEEEecCCCCCCCCCC---ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC
Q 044830          395 ELRHLDVQSNLLQRLPFI---LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR  471 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  471 (801)
                      +++.|++++|.+++.+..   .+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            445555555555544432   24455555555555554433444555555555555555554444444555555555555


Q ss_pred             CCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcC
Q 044830          472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI  523 (801)
Q Consensus       472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  523 (801)
                      +|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            5555544444455555555555555555544444445555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=6.1e-19  Score=198.01  Aligned_cols=197  Identities=24%  Similarity=0.327  Sum_probs=147.5

Q ss_pred             ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEEC
Q 044830          415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL  494 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  494 (801)
                      .+++.|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            378899999999886 66655  378999999999988 556   456889999999999886 666 554  8999999


Q ss_pred             CCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCc
Q 044830          495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG  574 (801)
Q Consensus       495 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~  574 (801)
                      ++|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|+|++|++++ +|. +    .  ++|+.|+|++|+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l----~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L----P--ESLEALDVSTNL  191 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C----C--TTCCEEECCSSC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h----h--CCCCEEECcCCC
Confidence            9999886 555   67889999999998877 443   57888999999998886 443 3    3  788889999888


Q ss_pred             CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccc
Q 044830          575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLS  654 (801)
Q Consensus       575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  654 (801)
                      |+ .+|. +..++                                      ......|+.|||++|+|+ .+|..+..++
T Consensus       192 L~-~lp~-~~~~L--------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~  230 (571)
T 3cvr_A          192 LE-SLPA-VPVRN--------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLD  230 (571)
T ss_dssp             CS-SCCC-CC----------------------------------------------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred             CC-chhh-HHHhh--------------------------------------hcccccceEEecCCCcce-ecCHHHhcCC
Confidence            87 5553 21110                                      011234588888888888 5777777888


Q ss_pred             cCceEeCcCccccccCCccccCCCC
Q 044830          655 SLKLLNFSHNILRGEIPVELTSLTA  679 (801)
Q Consensus       655 ~L~~L~Ls~N~l~~~ip~~l~~l~~  679 (801)
                      +|+.|+|++|.+++.+|..+..++.
T Consensus       231 ~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          231 PTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            8888888888888888887776544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=8.5e-19  Score=196.86  Aligned_cols=182  Identities=26%  Similarity=0.353  Sum_probs=98.2

Q ss_pred             CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830          440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      +|+.|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666654 34333  245666666666665 344   234566666666666654 444 333  56666666


Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830          520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID  599 (801)
Q Consensus       520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~  599 (801)
                      +|++++ +|.   .+++|+.|++++|++++ +|.       .+++|+.|+|++|++++ +|. +                
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~L~~-lp~-l----------------  178 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-------LPTSLEVLSVRNNQLTF-LPE-L----------------  178 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC-C----------------
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-------cCCCcCEEECCCCCCCC-cch-h----------------
Confidence            666655 332   45566666666666554 221       24556666666666654 442 1                


Q ss_pred             ccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccC-------ceEeCcCccccccCCc
Q 044830          600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL-------KLLNFSHNILRGEIPV  672 (801)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~ip~  672 (801)
                                                   .+.|+.|||++|+|+ .+|. +..  +|       +.|+|++|.|+ .+|.
T Consensus       179 -----------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~  224 (571)
T 3cvr_A          179 -----------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE  224 (571)
T ss_dssp             -----------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred             -----------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence                                         023456666666665 4444 443  45       66666666665 3555


Q ss_pred             cccCCCCCCeEeCcCCcceecCCC
Q 044830          673 ELTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       673 ~l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      .+..+++|+.|+|++|+++|.+|.
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCHH
Confidence            555566666666666666665553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6.5e-18  Score=167.31  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             CCEEECcCCCCcccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830          441 IEYLNLSNNSLSGMIP-QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       441 L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      +++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3455555555554422 334555555555555555555444455555555555555555555555555556666666666


Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830          520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF  584 (801)
Q Consensus       520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~  584 (801)
                      +|++.+..|..+..+++|++|+|++|++++..+..+    ..+++|+.|++++|++.+..+...+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~c~c~l~~l  174 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF----DTLHSLSTLNLLANPFNCNCYLAWL  174 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT----TTCTTCCEEECCSCCEECSGGGHHH
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh----cCCCCCCEEEecCcCCcCCCchHHH
Confidence            666655555556666666666666666655544433    5667777777777777766554433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=2.4e-18  Score=183.83  Aligned_cols=233  Identities=18%  Similarity=0.199  Sum_probs=179.1

Q ss_pred             cEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccE-EECC
Q 044830          418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVA-LNLN  495 (801)
Q Consensus       418 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~  495 (801)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            57889999998 567665  3689999999999997777789999999999999999876655 57889988775 6677


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC-cCcccCCCCCCCCCCCC-CCCcEEEccCC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN-SFHGPIYNNVPSIKRPF-PELRIIDISRN  573 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~l-~~L~~LdLs~N  573 (801)
                      .|++++..|..|.++++|++|++++|++....+..+....++..|++.++ ++....+..+    ..+ ..++.|+|++|
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF----VGLSFESVILWLNKN  164 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSS
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch----hhcchhhhhhccccc
Confidence            79999888899999999999999999999888877778888999999764 5554333333    333 46899999999


Q ss_pred             cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccC-Ceeeeeccccccc
Q 044830          574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSN-NRFEGMIPKEVGK  652 (801)
Q Consensus       574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~~~~p~~l~~  652 (801)
                      +++. +|...|.                                           ...|+.|++++ |.++...++.|+.
T Consensus       165 ~i~~-i~~~~f~-------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          165 GIQE-IHNSAFN-------------------------------------------GTQLDELNLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             CCCE-ECTTSST-------------------------------------------TEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred             cccC-CChhhcc-------------------------------------------ccchhHHhhccCCcccCCCHHHhcc
Confidence            9984 4433221                                           24578999985 6777555567899


Q ss_pred             cccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcC
Q 044830          653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQ  704 (801)
Q Consensus       653 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  704 (801)
                      +++|+.|||++|+|+...+..   +..|+.|.+.+++--..+|.-..+..+.
T Consensus       201 l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~  249 (350)
T 4ay9_X          201 ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALM  249 (350)
T ss_dssp             EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred             CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChh
Confidence            999999999999999554444   4556666666665556788644444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.1e-17  Score=165.75  Aligned_cols=154  Identities=21%  Similarity=0.263  Sum_probs=77.9

Q ss_pred             eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830          397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR  476 (801)
Q Consensus       397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  476 (801)
                      +.++++++.++.+|....++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|.++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            44555555555555444445555555555555444444444555555555555555444444444555555555555444


Q ss_pred             ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830          477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP  556 (801)
Q Consensus       477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  556 (801)
                      ...+..                        |.++++|++|++++|++.+..+..+..+++|++|+|++|++++..+..+ 
T Consensus        94 ~l~~~~------------------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-  148 (220)
T 2v9t_B           94 ELPKSL------------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF-  148 (220)
T ss_dssp             CCCTTT------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-
T ss_pred             ccCHhH------------------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH-
Confidence            333333                        4444555555555555555444555555555555555555544333222 


Q ss_pred             CCCCCCCCCcEEEccCCcCCcc
Q 044830          557 SIKRPFPELRIIDISRNGFTGL  578 (801)
Q Consensus       557 ~~~~~l~~L~~LdLs~N~l~~~  578 (801)
                         ..+++|+.|+|++|++...
T Consensus       149 ---~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          149 ---SPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             ---TTCTTCCEEECCSSCEECS
T ss_pred             ---hCCCCCCEEEeCCCCcCCC
Confidence               4555666666666666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=2.2e-17  Score=163.54  Aligned_cols=156  Identities=20%  Similarity=0.231  Sum_probs=145.5

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN  473 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  473 (801)
                      .-+.+++++|.++.+|......+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus        12 ~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            55689999999999988778889999999999997754 45889999999999999999888889999999999999999


Q ss_pred             cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCccc
Q 044830          474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP  550 (801)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  550 (801)
                      .+++..+..|..+++|++|+|++|++++..|..|.++++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99988888899999999999999999999899999999999999999999999999999999999999999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.9e-17  Score=163.78  Aligned_cols=150  Identities=22%  Similarity=0.258  Sum_probs=84.3

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                      ..+.++++++.+..+|....++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|+|++|+
T Consensus        20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            45556666666666665555666666666666666555566666666666666666654444555556666666666666


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN  545 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N  545 (801)
                      +++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            65544445555555555555555555 44555555555555555555554444333333333333333333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=3.4e-17  Score=162.14  Aligned_cols=150  Identities=19%  Similarity=0.277  Sum_probs=124.0

Q ss_pred             CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830          442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56777888777 4454443  57888889988888777778888999999999999998888889999999999999999


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830          522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID  599 (801)
Q Consensus       522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~  599 (801)
                      ++.+..+..+..+++|++|+|++|++.+..+..+    ..+++|+.|+|++|++++..+ ..+..++.|..++...+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAF----QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc----CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCC
Confidence            9998888888999999999999999998766655    889999999999999996555 456777777666555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=7.1e-18  Score=180.90  Aligned_cols=180  Identities=22%  Similarity=0.219  Sum_probs=152.0

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccc-cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN  473 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  473 (801)
                      .-+.++++++.++.+|....+.++.|++++|++++..+..+. .+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            456788889989888877778899999999999987777777 8999999999999999888888999999999999999


Q ss_pred             cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhc---cCCCCCCEEEccCCcCccc
Q 044830          474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT---ATLPRLQVLVLRSNSFHGP  550 (801)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~  550 (801)
                      ++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++.+..+..+   ..+++|+.|+|++|++.+.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            9998878889999999999999999998888899999999999999999988776666   5689999999999998854


Q ss_pred             CCCCCCCCCCCCCC--CcEEEccCCcCCcc
Q 044830          551 IYNNVPSIKRPFPE--LRIIDISRNGFTGL  578 (801)
Q Consensus       551 ~~~~~~~~~~~l~~--L~~LdLs~N~l~~~  578 (801)
                      .+..+    ..++.  ++.|+|++|++...
T Consensus       179 ~~~~~----~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          179 PLTDL----QKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CHHHH----HHSCHHHHTTEECCSSCEECC
T ss_pred             CHHHh----hhccHhhcceEEecCCCccCC
Confidence            32222    44555  47899999988754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=2.1e-17  Score=171.34  Aligned_cols=190  Identities=21%  Similarity=0.318  Sum_probs=109.8

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      ++..+.+..+.+.+..  .+..+++|+.|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            3344455555555332  234566777777777777643 3 36666777777777777765433  6666666666666


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|.+++ + ..+..+++|++|++++|++.+.  ..+..                            +++|+.|++++|++
T Consensus        99 ~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~----------------------------l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           99 ENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVH----------------------------LPQLESLYLGNNKI  146 (291)
T ss_dssp             SSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGG----------------------------CTTCCEEECCSSCC
T ss_pred             CCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcC----------------------------CCCCCEEEccCCcC
Confidence            666654 2 2355666666666666665543  22334                            45555555555555


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      ++. +  .+.                                          .++.|+.|++++|++++..|  +..+++
T Consensus       147 ~~~-~--~l~------------------------------------------~l~~L~~L~L~~N~l~~~~~--l~~l~~  179 (291)
T 1h6t_A          147 TDI-T--VLS------------------------------------------RLTKLDTLSLEDNQISDIVP--LAGLTK  179 (291)
T ss_dssp             CCC-G--GGG------------------------------------------GCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             Ccc-h--hhc------------------------------------------cCCCCCEEEccCCccccchh--hcCCCc
Confidence            432 1  011                                          13445666666666665544  666667


Q ss_pred             CceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830          656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                      |+.|+|++|.+++. | .+..+++|+.|++++|+++.
T Consensus       180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777766643 3 36667777777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.6e-17  Score=176.51  Aligned_cols=166  Identities=27%  Similarity=0.266  Sum_probs=131.6

Q ss_pred             ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLA-NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      -+.++++++.++ .+|..+.  +.++.|+|++|.+++..+..+. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368899999888 4665543  4588999999999988777787 88999999999999998888889999999999999


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|++++..+..|.++++|++|+|++|++.+..+..+..+++|+.|+|++|++.+..+..+ .....+++|+.|||++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT-C----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh-cCcccCCcCCEEECCCCCC
Confidence            999987777788899999999999999988888889999999999999998886332211 1114678899999999988


Q ss_pred             CccCcHHHHhhh
Q 044830          576 TGLLPARYFQSL  587 (801)
Q Consensus       576 ~~~~p~~~~~~l  587 (801)
                      ++ +|...+..+
T Consensus       176 ~~-l~~~~~~~l  186 (361)
T 2xot_A          176 KK-LPLTDLQKL  186 (361)
T ss_dssp             CC-CCHHHHHHS
T ss_pred             Cc-cCHHHhhhc
Confidence            84 454444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6.4e-17  Score=167.63  Aligned_cols=147  Identities=25%  Similarity=0.351  Sum_probs=115.7

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            67899999999988854 3 48889999999999999986554  8899999999999999985 33 488999999999


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      +++|.+++.  ..+..+++|+.|++++|++.+.  ..+..+++|+.|++++|++.+..+      +..+++|+.|++++|
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSS
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCC
Confidence            999999864  5688899999999999999775  456677777777777777665432      245566666666666


Q ss_pred             cCC
Q 044830          574 GFT  576 (801)
Q Consensus       574 ~l~  576 (801)
                      +++
T Consensus       189 ~i~  191 (291)
T 1h6t_A          189 HIS  191 (291)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=1.4e-17  Score=189.23  Aligned_cols=147  Identities=24%  Similarity=0.358  Sum_probs=79.1

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +++|+.|++++|.+... + .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+.+ +| .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            45555666666655532 2 35555666666666666554433  5555566666666665553 22 455555566666


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      |++|.+.+.  ..+..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|++.+..+  +    ..+++|+.|+|++|
T Consensus       116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l----~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L----AGLTKLQNLYLSKN  185 (605)
T ss_dssp             CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G----TTCTTCCEEECCSS
T ss_pred             ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h----ccCCCCCEEECcCC
Confidence            666655532  3355555555555555555544  345555555555555555554333  2    44555555555555


Q ss_pred             cCC
Q 044830          574 GFT  576 (801)
Q Consensus       574 ~l~  576 (801)
                      +++
T Consensus       186 ~i~  188 (605)
T 1m9s_A          186 HIS  188 (605)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=7.8e-17  Score=183.12  Aligned_cols=190  Identities=20%  Similarity=0.286  Sum_probs=143.6

Q ss_pred             CccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCCCE
Q 044830          365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY  443 (801)
Q Consensus       365 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  443 (801)
                      .+..+.+..+.+.+..+..   .+.     .|+.|++++|.+..++. ..+++|+.|+|++|.+++..+  +..+++|+.
T Consensus        22 ~l~~l~l~~~~i~~~~~~~---~L~-----~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQN---ELN-----SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHH---HHT-----TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHhccCCCcccccchh---cCC-----CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            4555666666665433211   111     67788888888877753 337888888888888886544  788888888


Q ss_pred             EECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcC
Q 044830          444 LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI  523 (801)
Q Consensus       444 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  523 (801)
                      |+|++|.+++ ++ .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++
T Consensus        92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred             EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence            9998888875 33 578888888889888888753  4577888888899988888865  5788888888899988888


Q ss_pred             CCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCcc
Q 044830          524 NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL  578 (801)
Q Consensus       524 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  578 (801)
                      .+..|  +..+++|+.|+|++|++.+. +     .+..+++|+.|+|++|++++.
T Consensus       166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-----~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          166 SDIVP--LAGLTKLQNLYLSKNHISDL-R-----ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC-G-----GGTTCTTCSEEECCSEEEECC
T ss_pred             CCchh--hccCCCCCEEECcCCCCCCC-h-----HHccCCCCCEEEccCCcCcCC
Confidence            87766  78888888899988888763 1     236788888888888888753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.1e-16  Score=157.56  Aligned_cols=157  Identities=18%  Similarity=0.188  Sum_probs=139.5

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      +.+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|++....+..|..+++|++|+|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            4678999999988 5666544  789999999999999889999999999999999999987777788999999999999


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|++++..+..|..+++|++|++++|++. .+|..+..+++|++|+|++|++.+..+..+    ..+++|+.|++++|++
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF----DRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECTTSCB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH----hCCCCCCEEEeeCCCc
Confidence            99999887778899999999999999998 567888999999999999999987655434    7899999999999999


Q ss_pred             CccCc
Q 044830          576 TGLLP  580 (801)
Q Consensus       576 ~~~~p  580 (801)
                      .+..+
T Consensus       172 ~c~c~  176 (229)
T 3e6j_A          172 DCECR  176 (229)
T ss_dssp             CTTBG
T ss_pred             cCCcc
Confidence            87765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.2e-16  Score=155.35  Aligned_cols=153  Identities=16%  Similarity=0.231  Sum_probs=125.8

Q ss_pred             ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEE
Q 044830          413 LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL  492 (801)
Q Consensus       413 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  492 (801)
                      .+++|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4678899999999988 455 68889999999999997763  3468889999999999999988788889999999999


Q ss_pred             ECCCCcCCCCCCccccCCCCCcEEeCCCCc-CCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEcc
Q 044830          493 NLNDNELEGKLPPSLANCGDLEVLDVGNNK-INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS  571 (801)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs  571 (801)
                      ++++|.+++..|..+..+++|++|++++|+ +.. ++ .+..+++|++|++++|++.+..      .+..+++|+.|+++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAF  189 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEEC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEee
Confidence            999999988788889999999999999998 544 44 5888999999999999987632      23778999999999


Q ss_pred             CCcCCc
Q 044830          572 RNGFTG  577 (801)
Q Consensus       572 ~N~l~~  577 (801)
                      +|++.+
T Consensus       190 ~N~i~~  195 (197)
T 4ezg_A          190 SQTIGG  195 (197)
T ss_dssp             BC----
T ss_pred             CcccCC
Confidence            998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=3.5e-17  Score=190.94  Aligned_cols=195  Identities=21%  Similarity=0.206  Sum_probs=116.5

Q ss_pred             ECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830          445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       445 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      +++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+++
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34444444 55777888888999999999887 56666668889999999999988 77888889999999999999988


Q ss_pred             CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccc
Q 044830          525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN  604 (801)
Q Consensus       525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~  604 (801)
                       .+|..+..+++|++|+|++|.+. .+|..    +..+++|+.|+|++|++++.+|..+ ..+..               
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~---------------  341 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWE----FGNLCNLQFLGVEGNPLEKQFLKIL-TEKSV---------------  341 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CCCSS----TTSCTTCCCEECTTSCCCSHHHHHH-HHHHH---------------
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-ccChh----hhcCCCccEEeCCCCccCCCChHHH-hhcch---------------
Confidence             56888889999999999999886 34443    4889999999999999998888653 22211               


Q ss_pred             cCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCc--------cccccCCccccC
Q 044830          605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHN--------ILRGEIPVELTS  676 (801)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~  676 (801)
                                                ....++|++|.+++.+|..      |+.|++++|        .+.+.++..+..
T Consensus       342 --------------------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          342 --------------------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             --------------------------HHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred             --------------------------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence                                      1123678999999888864      556777777        455556666777


Q ss_pred             CCCCCeEeCcCCcceecCCC
Q 044830          677 LTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       677 l~~L~~L~ls~N~l~g~iP~  696 (801)
                      +..+....+++|-+.+....
T Consensus       390 l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ------------CCCGGGCC
T ss_pred             ccccceeeeeccccccccCc
Confidence            88888888999988765543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.2e-19  Score=205.06  Aligned_cols=209  Identities=17%  Similarity=0.107  Sum_probs=129.9

Q ss_pred             cCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCC--------ccccCchhHhhcCCCCCCEEe-CCCccCCC
Q 044830           88 GQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRT--------KFEQHTFNNLAKNLTELRYLL-LDNVQMFS  158 (801)
Q Consensus        88 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~--------~~~~~~~~~~l~~l~~L~~L~-L~~~~~~~  158 (801)
                      ..+++|+.|+|++|.++ .+|..+++|++|+.|++++|....        ....+..|..+..+++|+.|+ ++.+.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            45667777777777665 556667777777777765541000        001133445555555555555 333321  


Q ss_pred             CCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccc
Q 044830          159 VVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTI  238 (801)
Q Consensus       159 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  238 (801)
                                 .+|..+.+++|.+....+      ..|+.|++++|.+..  +|.+..+++|+.|+|++|.++ .+|..+
T Consensus       423 -----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          423 -----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred             -----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC--CcCccccccCcEeecCccccc-ccchhh
Confidence                       122222233333332111      236667777663322  455336677777777777777 677788


Q ss_pred             cCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCcccc-CccccCCCCCcEeeccCeeeeeeCCcc---CcCCC
Q 044830          239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF-PDVFGNLSKLTRISLAHLNFTGQLPLS---AFNLT  314 (801)
Q Consensus       239 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~  314 (801)
                      +.+++|+.|+|++|.+++ +| .++.+++|++|+|++|.+++.. |..++.+++|+.|++++|.+++..|..   +..++
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence            888888888888888876 56 7888888888888888888776 788888888888888888887654422   12377


Q ss_pred             CCCEEEc
Q 044830          315 QLSLLEL  321 (801)
Q Consensus       315 ~L~~L~l  321 (801)
                      +|+.|++
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            8888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.6e-16  Score=160.34  Aligned_cols=150  Identities=19%  Similarity=0.284  Sum_probs=86.5

Q ss_pred             cCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCC
Q 044830          484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFP  563 (801)
Q Consensus       484 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~  563 (801)
                      ..+++|++|++++|.++. ++ .+..+++|++|++++|++.+..+  +..+++|++|++++|++.+..+  +    .. +
T Consensus        38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~----~~-~  106 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--I----PS-A  106 (263)
T ss_dssp             HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--C----CC-S
T ss_pred             hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--c----cc-C
Confidence            334444444444444432 22 34444555555555555544333  4455555555555555543211  1    11 6


Q ss_pred             CCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeee
Q 044830          564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFE  643 (801)
Q Consensus       564 ~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  643 (801)
                      +|+.|++++|++++. |.  +.                                          .++.|+.|||++|+++
T Consensus       107 ~L~~L~L~~N~l~~~-~~--l~------------------------------------------~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A          107 CLSRLFLDNNELRDT-DS--LI------------------------------------------HLKNLEILSIRNNKLK  141 (263)
T ss_dssp             SCCEEECCSSCCSBS-GG--GT------------------------------------------TCTTCCEEECTTSCCC
T ss_pred             cccEEEccCCccCCC-hh--hc------------------------------------------CcccccEEECCCCcCC
Confidence            677777777776642 21  11                                          1345677777777777


Q ss_pred             eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceec
Q 044830          644 GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGP  693 (801)
Q Consensus       644 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  693 (801)
                      +. | .++.+++|+.|+|++|++++.  ..+..+++|+.|++++|++++.
T Consensus       142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            54 3 577778888888888888765  5677788888888888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1.2e-15  Score=148.22  Aligned_cols=149  Identities=19%  Similarity=0.254  Sum_probs=120.0

Q ss_pred             eeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830          395 ELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN  473 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  473 (801)
                      .++.|++++|.+..++. ..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            34444455544444331 236789999999997763  347888999999999999999878888999999999999999


Q ss_pred             cccccCCccccCCCCccEEECCCCc-CCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcc
Q 044830          474 QFRGSIPQIFSKCYDLVALNLNDNE-LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG  549 (801)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~  549 (801)
                      .+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++.+..  .+..+++|+.|++++|++.+
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            9998888889999999999999998 55 555 6889999999999999998754  68889999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.2e-18  Score=196.77  Aligned_cols=220  Identities=20%  Similarity=0.159  Sum_probs=113.4

Q ss_pred             cCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCc
Q 044830          287 GNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENL  366 (801)
Q Consensus       287 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L  366 (801)
                      ..+++|+.|++++|.+. .+|..++++++|+.|++++|......+..          +..+...+.+|..+..   +++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~---l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQY---FSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHH---HHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHH---HHhc
Confidence            44566667777777665 56666666666666666554321111100          0011233445555554   4556


Q ss_pred             cEEE-ccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEE
Q 044830          367 VELD-LSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLN  445 (801)
Q Consensus       367 ~~L~-Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  445 (801)
                      +.|+ ++.|.+.                                      .|..+.+++|.++.. +.     ..|+.|+
T Consensus       412 ~~L~~l~~n~~~--------------------------------------~L~~l~l~~n~i~~l-~~-----~~L~~L~  447 (567)
T 1dce_A          412 KAVDPMRAAYLD--------------------------------------DLRSKFLLENSVLKM-EY-----ADVRVLH  447 (567)
T ss_dssp             HHHCGGGHHHHH--------------------------------------HHHHHHHHHHHHHHH-HH-----TTCSEEE
T ss_pred             ccCcchhhcccc--------------------------------------hhhhhhhhccccccc-Cc-----cCceEEE
Confidence            6555 4444322                                      233333333333321 11     1355555


Q ss_pred             CcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830          446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND  525 (801)
Q Consensus       446 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  525 (801)
                      +++|.+++ +|. ++.+++|+.|++++|.++ .+|..|+.+++|+.|+|++|.+++ +| .+.++++|+.|++++|++++
T Consensus       448 Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          448 LAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             CTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS
T ss_pred             ecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC
Confidence            55555553 343 555555666666666555 455555556666666666666654 34 55566666666666666655


Q ss_pred             Cc-chhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEc
Q 044830          526 AF-PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI  570 (801)
Q Consensus       526 ~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdL  570 (801)
                      .. |..+..+++|+.|+|++|++++..+. .......+++|+.||+
T Consensus       523 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGI-QERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSSSC-TTHHHHHCTTCSEEEC
T ss_pred             CCCcHHHhcCCCCCEEEecCCcCCCCccH-HHHHHHHCcccCccCC
Confidence            54 55566666666666666666554331 1111233566666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=8.1e-16  Score=156.70  Aligned_cols=166  Identities=21%  Similarity=0.297  Sum_probs=131.4

Q ss_pred             eeEEEecCCCCCCCC-CCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          396 LRHLDVQSNLLQRLP-FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       396 L~~L~l~~n~l~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                      +..++++.+.+++++ ...+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|+
T Consensus        21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             HHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence            333444455554444 2236789999999998884 44 68889999999999999986554  8899999999999999


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN  554 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  554 (801)
                      +++. |.. .. ++|++|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|+.|++++|++.+.  . 
T Consensus        97 l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~-  166 (263)
T 1xeu_A           97 LKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G-  166 (263)
T ss_dssp             CSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T-
T ss_pred             cCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H-
Confidence            9863 432 33 8999999999999864  3688999999999999999876 3 688899999999999999876  2 


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCcc
Q 044830          555 VPSIKRPFPELRIIDISRNGFTGL  578 (801)
Q Consensus       555 ~~~~~~~l~~L~~LdLs~N~l~~~  578 (801)
                         .+..+++|+.|++++|++++.
T Consensus       167 ---~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 ---GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ---TSTTCCCCCEEEEEEEEEECC
T ss_pred             ---HhccCCCCCEEeCCCCcccCC
Confidence               347889999999999998855

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=5.8e-17  Score=189.06  Aligned_cols=153  Identities=22%  Similarity=0.239  Sum_probs=97.6

Q ss_pred             EEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcC
Q 044830          420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL  499 (801)
Q Consensus       420 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  499 (801)
                      +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.|
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            344444444 44666777777888888888777 55555667777888888888777 6777777778888888888887


Q ss_pred             CCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCC-CCCcEEEccCCcCCcc
Q 044830          500 EGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF-PELRIIDISRNGFTGL  578 (801)
Q Consensus       500 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~  578 (801)
                      + .+|..|.++++|++|+|++|.+. .+|..++.+++|++|+|++|++++.+|..+    ..+ ..+..++|++|.++|.
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL----TEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH----HHHHHHHHHHHHHHCCCCCC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH----hhcchhhhHHhhccCcccCc
Confidence            7 66777777788888888888775 456667777888888888887776655433    111 1122367777887777


Q ss_pred             CcH
Q 044830          579 LPA  581 (801)
Q Consensus       579 ~p~  581 (801)
                      +|.
T Consensus       357 ~p~  359 (727)
T 4b8c_D          357 LPH  359 (727)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=5.6e-15  Score=142.77  Aligned_cols=136  Identities=21%  Similarity=0.308  Sum_probs=83.0

Q ss_pred             CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCc-cccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830          442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN  520 (801)
Q Consensus       442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (801)
                      +.+++++|.++ .+|..+.  .+|++|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            44555555554 3333322  2555566666655544432 355566666666666666655566666666666666666


Q ss_pred             CcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830          521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF  584 (801)
Q Consensus       521 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~  584 (801)
                      |++.+..+..+..+++|++|+|++|++++..+..+    ..+++|++|+|++|++++..+...+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----hcCCCCCEEEeCCCCccCcCcchHH
Confidence            66666666666666666777777776666555444    6677788888888888877665444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.6e-15  Score=142.24  Aligned_cols=129  Identities=23%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcc-ccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830          397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS-SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF  475 (801)
Q Consensus       397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l  475 (801)
                      +.++++++.++.+|.....++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            4555666655555544444566666666665544332 255555566666666655555555555555555555555555


Q ss_pred             cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830          476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND  525 (801)
Q Consensus       476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  525 (801)
                      ++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            55555555555555555555555555555555555555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=4e-15  Score=157.35  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=82.8

Q ss_pred             cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCcc-EEECCCCcCCCCCCccccCCCCCcE
Q 044830          437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV-ALNLNDNELEGKLPPSLANCGDLEV  515 (801)
Q Consensus       437 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~  515 (801)
                      .+++|+.+++++|+++...+.+|.++.+|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++...+..|.+|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            3678888888888888777778888888888888887 7666677888888888 888887 666666678888888888


Q ss_pred             EeCCCCcCCCCcchhccCCCCCCEEEc
Q 044830          516 LDVGNNKINDAFPYWTATLPRLQVLVL  542 (801)
Q Consensus       516 L~Ls~n~i~~~~~~~~~~l~~L~~L~L  542 (801)
                      ++++.|++..+.+.+|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            888888888877778888888887763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.1e-15  Score=161.66  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=93.1

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCC-EEeCCCCcccccCCccccCCCCccEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLS-LLDLRKNQFRGSIPQIFSKCYDLVAL  492 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L  492 (801)
                      +++|+.+++++|+++...+.+|.++++|+.+++.+| ++...+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            578999999999998776778999999999999998 7777888999999999 999999 7887778999999999999


Q ss_pred             ECCCCcCCCCCCccccCCCCCcEEeC
Q 044830          493 NLNDNELEGKLPPSLANCGDLEVLDV  518 (801)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~L  518 (801)
                      ++++|+++...+..|.+|++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999888889999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=6.5e-15  Score=139.14  Aligned_cols=131  Identities=24%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             ccccEEEecCCCCC-CCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          415 SRIRFLSVSDNKLT-GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       415 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555555 44455555555555555555555543  3455555555555555555544444444455555555


Q ss_pred             CCCCcCCCCC-CccccCCCCCcEEeCCCCcCCCCcc---hhccCCCCCCEEEccCCcC
Q 044830          494 LNDNELEGKL-PPSLANCGDLEVLDVGNNKINDAFP---YWTATLPRLQVLVLRSNSF  547 (801)
Q Consensus       494 L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l  547 (801)
                      +++|.+++.. +..+..+++|++|++++|++.+..+   ..+..+++|++|++++|.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            5555554321 1344555555555555555544433   2444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.9e-14  Score=137.64  Aligned_cols=108  Identities=26%  Similarity=0.350  Sum_probs=58.0

Q ss_pred             CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830          440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      .|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4445555555544 333444555555555555555554444445555555555555555554444555555555555555


Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830          520 NNKINDAFPYWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~  548 (801)
                      +|++....+..+..+++|+.|++++|++.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            55555555555555666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=7.2e-15  Score=138.81  Aligned_cols=139  Identities=22%  Similarity=0.179  Sum_probs=119.8

Q ss_pred             CCCCCEEECcCCCCc-ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEE
Q 044830          438 LSTIEYLNLSNNSLS-GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL  516 (801)
Q Consensus       438 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  516 (801)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            478999999999998 67888889999999999999999866  788999999999999999998888888889999999


Q ss_pred             eCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830          517 DVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP  580 (801)
Q Consensus       517 ~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  580 (801)
                      ++++|++.+... ..+..+++|+.|++++|++++..+. ....+..+++|++|++++|.+. .+|
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhCccCcEecCCCCChh-hcc
Confidence            999999988643 7889999999999999999865430 0013478999999999999986 344

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.8e-15  Score=136.96  Aligned_cols=126  Identities=23%  Similarity=0.354  Sum_probs=68.3

Q ss_pred             ccccEEEecCCCCC-CCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          415 SRIRFLSVSDNKLT-GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       415 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666655 45555555566666666666665543  4455555566666666655554555555555555555


Q ss_pred             CCCCcCCCC-CCccccCCCCCcEEeCCCCcCCCCcc---hhccCCCCCCEEEc
Q 044830          494 LNDNELEGK-LPPSLANCGDLEVLDVGNNKINDAFP---YWTATLPRLQVLVL  542 (801)
Q Consensus       494 L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L  542 (801)
                      +++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555542 22445555555555555555554443   34444445544444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=4.5e-14  Score=134.60  Aligned_cols=131  Identities=20%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ  474 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  474 (801)
                      ..+.++++++.++.++....++++.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            34455555555555554444555555555555554444444555555555555555554444444555555555555555


Q ss_pred             ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830          475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND  525 (801)
Q Consensus       475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  525 (801)
                      +++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            554444444445555555555555543333334444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=5e-14  Score=135.99  Aligned_cols=131  Identities=21%  Similarity=0.248  Sum_probs=78.9

Q ss_pred             CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830          442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      +.+++++|.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35566666655 3343322  45666666666665 45566666666666666666666655556666666666666666


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830          522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP  580 (801)
Q Consensus       522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  580 (801)
                      ++.+..+..+..+++|++|+|++|+++...+..+    ..+++|+.|++++|++...-.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF----NDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT----TTCTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh----hcCccccEEEeCCCCeecCCc
Confidence            6666666666666666666666666664333222    556666666666666654433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=9.3e-15  Score=134.99  Aligned_cols=132  Identities=23%  Similarity=0.244  Sum_probs=104.3

Q ss_pred             CCCCCEEECcCCCCc-ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEE
Q 044830          438 LSTIEYLNLSNNSLS-GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL  516 (801)
Q Consensus       438 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  516 (801)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467899999999998 67888888899999999999998865  678888999999999999987788878788899999


Q ss_pred             eCCCCcCCCC-cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccC
Q 044830          517 DVGNNKINDA-FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR  572 (801)
Q Consensus       517 ~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~  572 (801)
                      ++++|++.+. .+..+..+++|++|++++|++++..+. ....+..+++|+.||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCCCcccccCCC
Confidence            9999998774 346778888888888888888764330 001236677888887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7.4e-14  Score=133.07  Aligned_cols=133  Identities=19%  Similarity=0.217  Sum_probs=88.5

Q ss_pred             CCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830          441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN  520 (801)
Q Consensus       441 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (801)
                      .+.++++++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3556666666653 33222  24666666666666655555566667777777777777655555566777777777777


Q ss_pred             CcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830          521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP  580 (801)
Q Consensus       521 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  580 (801)
                      |++++..+..+..+++|++|++++|++++..+..    +..+++|+.|++++|++.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHH----hcCCcccCEEEecCCCeeccCc
Confidence            7777666666777777777777777776543322    2667888888888888887766

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.45  E-value=4.8e-12  Score=137.23  Aligned_cols=323  Identities=12%  Similarity=0.114  Sum_probs=158.2

Q ss_pred             CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830          170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL  249 (801)
Q Consensus       170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  249 (801)
                      .+|+++.+..+ ++..-..+|.++++|+.+++..+ +.......+..+..|+.+.+..+ +.......|..+..++....
T Consensus        71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred             CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence            44444444422 33233344555555555555444 33322223334445544444322 22122333444433222222


Q ss_pred             ccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccccc
Q 044830          250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ  329 (801)
Q Consensus       250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~  329 (801)
                      ...  ......+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......+.++..|+.+.+..+... .
T Consensus       148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i  222 (394)
T 4fs7_A          148 EGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L  222 (394)
T ss_dssp             TTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E
T ss_pred             ccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-e
Confidence            211  11223456666666666665442 2244455666666666666554 33334445556666666665544322 1


Q ss_pred             CCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCC
Q 044830          330 LPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL  409 (801)
Q Consensus       330 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  409 (801)
                      ....+.+..|+.+.+.... + .+....+  ..+..++.+.+..+...                            +...
T Consensus       223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f--~~~~~l~~~~~~~~~~~----------------------------i~~~  270 (394)
T 4fs7_A          223 GDFALSKTGVKNIIIPDSF-T-ELGKSVF--YGCTDLESISIQNNKLR----------------------------IGGS  270 (394)
T ss_dssp             CTTTTTTCCCCEEEECTTC-C-EECSSTT--TTCSSCCEEEECCTTCE----------------------------ECSC
T ss_pred             ehhhcccCCCceEEECCCc-e-ecccccc--cccccceeEEcCCCcce----------------------------eecc
Confidence            1222244556666554321 1 1222111  12455555555444321                            0111


Q ss_pred             CCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCc
Q 044830          410 PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL  489 (801)
Q Consensus       410 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  489 (801)
                      .+..+..++.+......+.   ...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++.+...+|.++.+|
T Consensus       271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence            1222344444444433322   234556667777776554 44445566777777777777643 554556677777777


Q ss_pred             cEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEE
Q 044830          490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVL  540 (801)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  540 (801)
                      +.+++..+ ++..-..+|.+|.+|+.+++..+ + ..+...|.++++|+.+
T Consensus       346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~-~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-L-EQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-G-GGGGGGBCTTCEEEEE
T ss_pred             CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-C-EEhhheecCCCCCcEE
Confidence            77777665 55455567777777777777644 2 2224556666666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=4.5e-12  Score=136.74  Aligned_cols=126  Identities=12%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCc-----ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCcc
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS-----GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV  490 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  490 (801)
                      +|+.+.+. +.++..-..+|.++++|+.+++.+|.+.     ...+.+|.+|++|+.+++.+ .+..+...+|.++++|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            34444442 2233333455666666666666665543     34445666666666666663 35545555666666666


Q ss_pred             EEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC-CCCEEEccCC
Q 044830          491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP-RLQVLVLRSN  545 (801)
Q Consensus       491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N  545 (801)
                      .+.|..+ ++..-+..|.+| +|+.+++++|.+....+..|.+++ .++.|++..+
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            6666443 444445556666 666666666655554444444442 3444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=1.7e-11  Score=132.12  Aligned_cols=90  Identities=10%  Similarity=0.131  Sum_probs=71.0

Q ss_pred             CccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCC
Q 044830          431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC  510 (801)
Q Consensus       431 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  510 (801)
                      .+.+|.++++|+.+++.+ .++.....+|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+....+..|.++
T Consensus       292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            346678888889998884 477667778888999999999655 666667888888 89999999998876667778877


Q ss_pred             C-CCcEEeCCCCcC
Q 044830          511 G-DLEVLDVGNNKI  523 (801)
Q Consensus       511 ~-~L~~L~Ls~n~i  523 (801)
                      + .++.|++..+.+
T Consensus       369 ~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          369 PDDITVIRVPAESV  382 (401)
T ss_dssp             CTTCCEEEECGGGH
T ss_pred             CCCccEEEeCHHHH
Confidence            4 788888877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3.7e-13  Score=127.99  Aligned_cols=137  Identities=20%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             ccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcE
Q 044830          436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEV  515 (801)
Q Consensus       436 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  515 (801)
                      .++++|++|++++|.++. +|......++|++|++++|.+++.  ..|..+++|++|++++|.+++..+..+..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            344555555555555552 233222222555555555555543  34555556666666666665443333455666666


Q ss_pred             EeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830          516 LDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT  576 (801)
Q Consensus       516 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  576 (801)
                      |++++|++....+ ..+..+++|+.|++++|++... +......+..+++|+.||+++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666666643221 2455666666666666666532 2110001356677777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=3.7e-13  Score=128.01  Aligned_cols=131  Identities=19%  Similarity=0.221  Sum_probs=110.5

Q ss_pred             ccccccEEEecCCCCCCCCccccccC-CCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccE
Q 044830          413 LSSRIRFLSVSDNKLTGEFPSSICNL-STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA  491 (801)
Q Consensus       413 ~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  491 (801)
                      .+.+|+.|++++|.++. +|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            36789999999999984 454 4454 4999999999999975  57889999999999999999766666789999999


Q ss_pred             EECCCCcCCCCCCc--cccCCCCCcEEeCCCCcCCCCcch---hccCCCCCCEEEccCCcCc
Q 044830          492 LNLNDNELEGKLPP--SLANCGDLEVLDVGNNKINDAFPY---WTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       492 L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~N~l~  548 (801)
                      |++++|.++ .+|.  .+..+++|+.|++++|++....+.   .+..+++|+.|++++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999996 4565  788999999999999999765433   4889999999999999765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.38  E-value=2.4e-11  Score=131.68  Aligned_cols=310  Identities=13%  Similarity=0.078  Sum_probs=162.7

Q ss_pred             CccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCC
Q 044830          187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLK  266 (801)
Q Consensus       187 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  266 (801)
                      ..+|.++.+|+.+.+..+ +....-.++.++++|+.+++..+ ++..-...|..+.+|+.+.+..+ +......+|.++.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            456677777888877655 54444444446677777776543 33233445666666666555433 2223334444443


Q ss_pred             CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEcc
Q 044830          267 QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLG  345 (801)
Q Consensus       267 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~  345 (801)
                      .++......  .......+|.++++|+.+.+.++. .......|.++.+|+.+++..+ ++......+ .+..|+.+.+.
T Consensus       141 ~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          141 FKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence            322222211  122233455566666666655432 2233344455555555555443 221111122 34444444333


Q ss_pred             CCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCC--CCCCCCCCccccccEEEec
Q 044830          346 GNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN--LLQRLPFILSSRIRFLSVS  423 (801)
Q Consensus       346 ~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~L~~L~L~  423 (801)
                      .+...  +.+..+.   ..                              .++.+.+...  .+....+..+..++.+.+.
T Consensus       217 ~~~~~--i~~~~~~---~~------------------------------~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~  261 (394)
T 4fs7_A          217 NSLYY--LGDFALS---KT------------------------------GVKNIIIPDSFTELGKSVFYGCTDLESISIQ  261 (394)
T ss_dssp             TTCCE--ECTTTTT---TC------------------------------CCCEEEECTTCCEECSSTTTTCSSCCEEEEC
T ss_pred             CCceE--eehhhcc---cC------------------------------CCceEEECCCceecccccccccccceeEEcC
Confidence            22111  1111111   12                              3333333221  1122223345667777776


Q ss_pred             CCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCC
Q 044830          424 DNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL  503 (801)
Q Consensus       424 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  503 (801)
                      .+... .....|..+..++.+....+.+   ...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++..-
T Consensus       262 ~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          262 NNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             CTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             CCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence            65433 3445566777777777665533   2345667777877777654 55455667777777888777643 55455


Q ss_pred             CccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC
Q 044830          504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN  545 (801)
Q Consensus       504 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N  545 (801)
                      ..+|.+|.+|+.+++..+ +..+...+|.++++|+.+.+..+
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            567777777887777665 65666667777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=3.9e-15  Score=144.83  Aligned_cols=155  Identities=23%  Similarity=0.324  Sum_probs=116.0

Q ss_pred             ccccEEEecCCCCCCCCcc------ccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 044830          415 SRIRFLSVSDNKLTGEFPS------SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYD  488 (801)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  488 (801)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3455556666666655554      78888999999999999886 56 7888889999999999888 56777777788


Q ss_pred             ccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCC------CCCCCCC
Q 044830          489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNN------VPSIKRP  561 (801)
Q Consensus       489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~~  561 (801)
                      |++|++++|++++ +| .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+..      ....+..
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            9999999999885 34 67788889999999998876543 56788888999999888887664432      0001256


Q ss_pred             CCCCcEEEccCCcCC
Q 044830          562 FPELRIIDISRNGFT  576 (801)
Q Consensus       562 l~~L~~LdLs~N~l~  576 (801)
                      +++|+.||  +|.++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            77888877  56554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=7.4e-15  Score=142.82  Aligned_cols=132  Identities=20%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             cccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHh
Q 044830          506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQ  585 (801)
Q Consensus       506 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~  585 (801)
                      .+..+++|++|++++|++.+ +| .+..+++|+.|++++|++.. +|    ..+..+++|+.|++++|++++ +| . +.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~----~~~~~~~~L~~L~L~~N~l~~-l~-~-~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IE----NLDAVADTLEELWISYNQIAS-LS-G-IE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CS----SHHHHHHHCSEEEEEEEECCC-HH-H-HH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-cc----chhhcCCcCCEEECcCCcCCc-CC-c-cc
Confidence            45555555555555555544 23 44555555555555555542 11    122344566666666666654 22 1 11


Q ss_pred             hhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecc-ccccccccCceEeCcCc
Q 044830          586 SLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIP-KEVGKLSSLKLLNFSHN  664 (801)
Q Consensus       586 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N  664 (801)
                      .                                          ++.|+.|++++|++++..+ ..+..+++|+.|++++|
T Consensus       113 ~------------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          113 K------------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             H------------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             c------------------------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            1                                          2345667777777664332 45666777777777777


Q ss_pred             cccccCCcc----------ccCCCCCCeEeCcCCcce
Q 044830          665 ILRGEIPVE----------LTSLTALSVLNLSFNQLV  691 (801)
Q Consensus       665 ~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  691 (801)
                      .+.+.+|..          +..+++|+.||  +|+++
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            776665543          56666677665  44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=7.1e-12  Score=118.14  Aligned_cols=106  Identities=27%  Similarity=0.345  Sum_probs=62.9

Q ss_pred             cEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCC
Q 044830          418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN  497 (801)
Q Consensus       418 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  497 (801)
                      +.+++++|.++. +|..+  .+.|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            344555555542 33333  245666666666666555666666666666666666666555555666666666666666


Q ss_pred             cCCCCCCccccCCCCCcEEeCCCCcCCCC
Q 044830          498 ELEGKLPPSLANCGDLEVLDVGNNKINDA  526 (801)
Q Consensus       498 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  526 (801)
                      ++++..+..|..+++|++|+|++|++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            66655555566666677777777666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=7.7e-12  Score=117.86  Aligned_cols=90  Identities=20%  Similarity=0.152  Sum_probs=45.0

Q ss_pred             CCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCc
Q 044830          487 YDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELR  566 (801)
Q Consensus       487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~  566 (801)
                      ++|++|+|++|++++..|..|.++++|++|++++|++.+..+..+..+++|++|+|++|++.+..+..+    ..+++|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF----DNLKSLT  105 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh----cCCCCCC
Confidence            344444444444444444444444445555555555444444444455555555555555544332222    5566666


Q ss_pred             EEEccCCcCCccCc
Q 044830          567 IIDISRNGFTGLLP  580 (801)
Q Consensus       567 ~LdLs~N~l~~~~p  580 (801)
                      .|+|++|+++...+
T Consensus       106 ~L~L~~N~~~c~c~  119 (170)
T 3g39_A          106 HIWLLNNPWDCACS  119 (170)
T ss_dssp             EEECCSSCBCTTBG
T ss_pred             EEEeCCCCCCCCch
Confidence            66666666665443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.4e-11  Score=116.47  Aligned_cols=81  Identities=23%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830          442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      +.+++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444444443 2332221  34444444444444444444444444444444444444333333344444444444444


Q ss_pred             cCCC
Q 044830          522 KIND  525 (801)
Q Consensus       522 ~i~~  525 (801)
                      ++.+
T Consensus        92 ~l~~   95 (174)
T 2r9u_A           92 HLKS   95 (174)
T ss_dssp             CCCC
T ss_pred             ccce
Confidence            4433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.4e-11  Score=116.43  Aligned_cols=105  Identities=23%  Similarity=0.320  Sum_probs=66.2

Q ss_pred             cEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCC
Q 044830          418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN  497 (801)
Q Consensus       418 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  497 (801)
                      +.+++++|.++ .+|..+.  +.|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34555555554 3444332  55666666666666666666666666777777777666555555666677777777777


Q ss_pred             cCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830          498 ELEGKLPPSLANCGDLEVLDVGNNKIND  525 (801)
Q Consensus       498 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  525 (801)
                      ++++..+..|..+++|++|++++|++..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            7765554556677777777777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.23  E-value=2.2e-09  Score=116.12  Aligned_cols=133  Identities=10%  Similarity=0.187  Sum_probs=83.5

Q ss_pred             ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830          432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG  511 (801)
Q Consensus       432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  511 (801)
                      ..+|.++..|+.+.+.++..+ ....+|.++..|+.+.+. +.++.+....|.++.+|+.+++..+ ++..-..+|.+|.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            345667777777777655433 455667777888888875 3455455667778888888888754 5445556788888


Q ss_pred             CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|+.+.+..+ ++.+...+|.++.+|+.+.+.++.....       .+..+.+|+.+.+..+.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-------~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-------AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-------TCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-------hhhccCCCCEEEeCCCCE
Confidence            8888888644 6666677788888888888887754321       124566777777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.4e-13  Score=146.98  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=20.0

Q ss_pred             cceEEEccCCeeeee----ccccccccccCceEeCcCcccccc
Q 044830          631 IFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILRGE  669 (801)
Q Consensus       631 ~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  669 (801)
                      .|+.|||++|.|++.    ++..+...++|+.|||++|.|+..
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            455555555555432    223333445566666666655543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=3.6e-13  Score=143.92  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             CCCCEEeCCCCcccccCCccc-cCCCCccEEECCCCcCCCCCCccc-----cCCCCCcEEeCCCCcCCCC----cchhcc
Q 044830          463 DSLSLLDLRKNQFRGSIPQIF-SKCYDLVALNLNDNELEGKLPPSL-----ANCGDLEVLDVGNNKINDA----FPYWTA  532 (801)
Q Consensus       463 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~----~~~~~~  532 (801)
                      ++|++|+|++|.++......+ ..+++|++|+|++|.++......+     ...++|++|+|++|.+++.    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            345555555555443221111 123355566666665543222222     2345666666666666442    233345


Q ss_pred             CCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCc
Q 044830          533 TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTG  577 (801)
Q Consensus       533 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  577 (801)
                      .+++|++|+|++|.+.+.....+...+...++|+.|||++|.+++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            566667777777666543221222222455678888888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.19  E-value=2.3e-09  Score=116.00  Aligned_cols=326  Identities=12%  Similarity=0.140  Sum_probs=160.7

Q ss_pred             ccCCCCC-CCCEEeccCCCCCccCCCCCCCCCCCCEEEccCcc---CcccCcccccCCCCCCEEEcccccCcccCccccc
Q 044830          188 IDIFHFP-FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITK---FSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS  263 (801)
Q Consensus       188 ~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~  263 (801)
                      .+|.+++ .|+.+.+-.+ +....-.++.++++|+.+.+..+.   ++..-..+|..+.+|+.+.+..+ ++......|.
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            4555663 4777777665 555444555577777777776553   43333445666666666665543 3334445566


Q ss_pred             CCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEE
Q 044830          264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHL  342 (801)
Q Consensus       264 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L  342 (801)
                      .+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-...| ...+|+.+.+..+-.. .....+ .+..++..
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALSTI  210 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccc-cccchhhhcccccee
Confidence            6666776666543 33344455666666666666543 222222223 2345666655443221 111122 44444444


Q ss_pred             EccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCC--CCCCCCCCccccccEE
Q 044830          343 KLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN--LLQRLPFILSSRIRFL  420 (801)
Q Consensus       343 ~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~L~~L  420 (801)
                      ........ .+...+................                   ...+..+.+...  .+....+..+..|+.+
T Consensus       211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i  270 (394)
T 4gt6_A          211 TSDSESYP-AIDNVLYEKSANGDYALIRYPS-------------------QREDPAFKIPNGVARIETHAFDSCAYLASV  270 (394)
T ss_dssp             EECCSSSC-BSSSCEEEECTTSCEEEEECCT-------------------TCCCSEEECCTTEEEECTTTTTTCSSCCEE
T ss_pred             cccccccc-cccceeeccccccccccccccc-------------------ccccceEEcCCcceEcccceeeecccccEE
Confidence            44333222 1111111000000000000000                   001122222111  1112223445667777


Q ss_pred             EecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC
Q 044830          421 SVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE  500 (801)
Q Consensus       421 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  500 (801)
                      .+.++... ....+|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++
T Consensus       271 ~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~  346 (394)
T 4gt6_A          271 KMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT  346 (394)
T ss_dssp             ECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred             ecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence            76654332 334556677777777775 3454455566777777777777654 55455567777777777777544 55


Q ss_pred             CCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCc
Q 044830          501 GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNS  546 (801)
Q Consensus       501 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~  546 (801)
                      ..-..+|.+|++|+.+++.++...   ...+..+.+|+.+.+..+.
T Consensus       347 ~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          347 KIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             BCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             EEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            444567777777777777766432   1345566667777665553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=5.8e-10  Score=118.58  Aligned_cols=103  Identities=21%  Similarity=0.217  Sum_probs=71.6

Q ss_pred             EEEecCC-CCCCCCccccccCCCCCEEECcC-CCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCC
Q 044830          419 FLSVSDN-KLTGEFPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND  496 (801)
Q Consensus       419 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  496 (801)
                      .++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 666 3566 77777777777775 777766666777777777777777777777777777777777777777


Q ss_pred             CcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830          497 NELEGKLPPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       497 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      |+|++..+..+..++ |+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            777755555555444 777777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=7.7e-10  Score=117.63  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             EEecCC-CCCCCCC-CccccccEEEecC-CCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830          399 LDVQSN-LLQRLPF-ILSSRIRFLSVSD-NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF  475 (801)
Q Consensus       399 L~l~~n-~l~~~~~-~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l  475 (801)
                      ++++++ .++.+|. ..+++|+.|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|++
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            344444 4444443 1123445555543 555444444445555555555555555544444445555555555555555


Q ss_pred             cccCCccccCCCCccEEECCCCcCC
Q 044830          476 RGSIPQIFSKCYDLVALNLNDNELE  500 (801)
Q Consensus       476 ~~~~~~~~~~l~~L~~L~L~~n~l~  500 (801)
                      ++..+..|..++ |+.|+|.+|.+.
T Consensus        93 ~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ceeCHHHcccCC-ceEEEeeCCCcc
Confidence            443333333333 555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=7.2e-10  Score=117.18  Aligned_cols=164  Identities=21%  Similarity=0.260  Sum_probs=96.7

Q ss_pred             ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhcc--CCCCCCEEEccC--CcCcccC-CCCC
Q 044830          481 QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTA--TLPRLQVLVLRS--NSFHGPI-YNNV  555 (801)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~--N~l~~~~-~~~~  555 (801)
                      ..+..+|+|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+.  .+|+|+.|+|+.  |...+.. ...+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            33455566666666665211 1222 22 56777777777766544333333  577788877753  2211110 0001


Q ss_pred             CCCC--CCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccce
Q 044830          556 PSIK--RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFT  633 (801)
Q Consensus       556 ~~~~--~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  633 (801)
                      ...+  ..+|+|+.|+|++|.+.+..+..++..                                        ..++.|+
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------------------------~~~~~L~  282 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------------------------------DILPQLE  282 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC----------------------------------------SSGGGCS
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC----------------------------------------ccCCCCC
Confidence            0011  357899999999998875433322110                                        1246789


Q ss_pred             EEEccCCeeeee----ccccccccccCceEeCcCccccccCCccccC-CCCCCeEeCcCCc
Q 044830          634 TIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILRGEIPVELTS-LTALSVLNLSFNQ  689 (801)
Q Consensus       634 ~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~L~ls~N~  689 (801)
                      .||||.|.+.+.    ++..+.++++|+.|+|++|.++...-..+.. +  ...++++.++
T Consensus       283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            999999998864    4555667899999999999887654333433 2  3567777776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.77  E-value=6.8e-07  Score=95.99  Aligned_cols=109  Identities=13%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830          433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD  512 (801)
Q Consensus       433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  512 (801)
                      ..+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++..-...|.+|.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            34445555555555443 33333445555555555555433 33333445555566666666555555444455566666


Q ss_pred             CcEEeCCCCcCCCCcchhccCCCCCCEEEccC
Q 044830          513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRS  544 (801)
Q Consensus       513 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  544 (801)
                      |+.++|..+ +..+...+|.++.+|+.+.+..
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            666666433 4444445555666666555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=3.4e-09  Score=112.02  Aligned_cols=186  Identities=16%  Similarity=0.141  Sum_probs=112.0

Q ss_pred             cccCCCCCEEECcCCCCc---------ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCc
Q 044830          435 ICNLSTIEYLNLSNNSLS---------GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP  505 (801)
Q Consensus       435 l~~l~~L~~L~Ls~n~i~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  505 (801)
                      +..+++|+.|.+......         +.+...+..+++|+.|.+++|.-. .++. +. +++|+.|++..|.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence            445677777777554321         123344566788888888777311 2232 33 67888888888877543333


Q ss_pred             ccc--CCCCCcEEeCCC--CcCCCC-----cchhc--cCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCc
Q 044830          506 SLA--NCGDLEVLDVGN--NKINDA-----FPYWT--ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG  574 (801)
Q Consensus       506 ~l~--~l~~L~~L~Ls~--n~i~~~-----~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~  574 (801)
                      .+.  .+++|+.|+|+.  |...+.     +...+  ..+|+|++|.|++|.+.+.....+... ..+++|++|||+.|.
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCC
Confidence            333  678888888753  221111     11122  257899999999998764332211111 347899999999999


Q ss_pred             CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccc-c
Q 044830          575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK-L  653 (801)
Q Consensus       575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-l  653 (801)
                      +.+..+..+...++                                       .++.|+.|||++|.++...-..+.. +
T Consensus       291 L~d~G~~~L~~~L~---------------------------------------~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          291 LTDEGARLLLDHVD---------------------------------------KIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             CBHHHHHHHHTTHH---------------------------------------HHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CChHHHHHHHhhcc---------------------------------------cCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            87654433322222                                       2467899999999887553333332 2


Q ss_pred             ccCceEeCcCcc
Q 044830          654 SSLKLLNFSHNI  665 (801)
Q Consensus       654 ~~L~~L~Ls~N~  665 (801)
                        ...++++.++
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              3668998887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=1.3e-06  Score=93.88  Aligned_cols=134  Identities=12%  Similarity=0.155  Sum_probs=100.5

Q ss_pred             ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830          432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG  511 (801)
Q Consensus       432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  511 (801)
                      ...+..+..|+.+.+..+ +......+|.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +.......|.+|.
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            345667788888888665 44455667888899999999876 66566778888999999998754 5445556788999


Q ss_pred             CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      +|+.+.+.++.+..+...+|.++.+|+.+.|..+ +.....    .++.++.+|+.+.+..+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV----YAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH----HHhhCCCCCCEEEECCc
Confidence            9999999988888888888999999999998754 332222    23477888888887544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=2.3e-08  Score=95.18  Aligned_cols=62  Identities=21%  Similarity=0.239  Sum_probs=39.9

Q ss_pred             ccceEEEccCCeeeee----ccccccccccCceEeC--cCcccccc----CCccccCCCCCCeEeCcCCcce
Q 044830          630 NIFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNF--SHNILRGE----IPVELTSLTALSVLNLSFNQLV  691 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~  691 (801)
                      +.|++|||++|.|...    +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3466777777776643    3455666677777777  66777643    3344555577777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=2.8e-09  Score=106.59  Aligned_cols=24  Identities=17%  Similarity=-0.096  Sum_probs=16.7

Q ss_pred             CCcccceeEeCCCCCcEEEEEcCC
Q 044830           26 DCCSWDGIICDEMTGHVIGLDLSS   49 (801)
Q Consensus        26 ~~c~w~gv~c~~~~~~v~~L~L~~   49 (801)
                      .-|+|.|+.|+....+|..+...+
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~   99 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSS   99 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred             HHHhcCcEEECCCCCEEEEEEecC
Confidence            468999999987655665554433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=6.7e-08  Score=92.00  Aligned_cols=68  Identities=19%  Similarity=0.162  Sum_probs=37.0

Q ss_pred             ccccCCCCccEEECCCC-cCCCC----CCccccCCCCCcEEeCCCCcCCCCc----chhccCCCCCCEEEccCCcCc
Q 044830          481 QIFSKCYDLVALNLNDN-ELEGK----LPPSLANCGDLEVLDVGNNKINDAF----PYWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       481 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~  548 (801)
                      ..+...+.|++|+|++| .+...    +...+...++|++|+|++|++.+..    ...+...+.|++|+|++|.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34556667777777777 66532    2334455666777777777665432    222333344555555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.06  E-value=2e-06  Score=85.88  Aligned_cols=67  Identities=33%  Similarity=0.378  Sum_probs=57.1

Q ss_pred             hcccceEEEccCCeeee--eccccccccccCceEeCcCccccccCCccccCCC--CCCeEeCcCCcceecCCC
Q 044830          628 VLNIFTTIDLSNNRFEG--MIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT--ALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       628 ~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~iP~  696 (801)
                      .++.|+.|+||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..+.  .|++|+|++|++++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            46789999999999998  4567788999999999999999975  3344444  999999999999998874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.70  E-value=1.8e-05  Score=73.09  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             CCCEEEccCccCcccCcccccCCCCCCEEEccccc-CcccCcccccCC----CCCCEEEcCCCC-CccccCccccCCCCC
Q 044830          219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY-FDGQVPASLSNL----KQLTVLNLEDNQ-FSGEFPDVFGNLSKL  292 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L  292 (801)
                      .|+.||++++.++..--..+..+++|++|+|++|. +++..-..+..+    ++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555544333444555555555555553 443322333332    245555555543 443333334444555


Q ss_pred             cEeeccCe
Q 044830          293 TRISLAHL  300 (801)
Q Consensus       293 ~~L~L~~n  300 (801)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=1.4e-05  Score=73.75  Aligned_cols=84  Identities=11%  Similarity=0.093  Sum_probs=58.6

Q ss_pred             CCCCEEEcccccCcccCcccccCCCCCCEEEcCCCC-CccccCccccCC----CCCcEeeccCee-eeeeCCccCcCCCC
Q 044830          242 RDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ-FSGEFPDVFGNL----SKLTRISLAHLN-FTGQLPLSAFNLTQ  315 (801)
Q Consensus       242 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~  315 (801)
                      ..|+.||+++|.++...-..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            578888888888877666667788888888888884 665444455553    368888888774 65443344556777


Q ss_pred             CCEEEccccc
Q 044830          316 LSLLELSRNQ  325 (801)
Q Consensus       316 L~~L~l~~n~  325 (801)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.08  E-value=0.00013  Score=68.74  Aligned_cols=11  Identities=36%  Similarity=0.495  Sum_probs=5.5

Q ss_pred             CCCccEEECCC
Q 044830          486 CYDLVALNLND  496 (801)
Q Consensus       486 l~~L~~L~L~~  496 (801)
                      -+.|++|+|++
T Consensus        40 n~~L~~L~L~~   50 (197)
T 1pgv_A           40 DTDLKEVNINN   50 (197)
T ss_dssp             CSSCCEEECTT
T ss_pred             CCCccEEECCC
Confidence            34455555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.0001  Score=69.41  Aligned_cols=70  Identities=13%  Similarity=0.230  Sum_probs=33.4

Q ss_pred             ccCCCCCcEEeCCCC-cCCCC----cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830          507 LANCGDLEVLDVGNN-KINDA----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT  576 (801)
Q Consensus       507 l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  576 (801)
                      +.+-+.|++|+|++| +|.+.    +.+.+..-..|+.|+|++|.+.......+...+..-+.|+.|+|++|.|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            344566777777764 66432    23334444555555555555543332222222223344444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.0021  Score=56.38  Aligned_cols=58  Identities=22%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             eEEEccCCeee-eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830          633 TTIDLSNNRFE-GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG  692 (801)
Q Consensus       633 ~~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  692 (801)
                      ..+|.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47899999997 35665443  479999999999998878889999999999999998864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.20  E-value=0.0082  Score=52.55  Aligned_cols=54  Identities=22%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             EEEecCCCCC--CCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCC
Q 044830          398 HLDVQSNLLQ--RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL  451 (801)
Q Consensus       398 ~L~l~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  451 (801)
                      .++.+++.++  .+|....++++.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555666555  55544444555555555555544444445555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	801
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 9e-19
 Identities = 67/295 (22%), Positives = 101/295 (34%), Gaps = 28/295 (9%)

Query: 433 SSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRKN-QFRGSIPQIFSKCYDL 489
            +      +  L+LS  +L     IP  LAN   L+ L +       G IP   +K   L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549
             L +    + G +P  L+    L  LD   N ++   P   ++LP L  +    N   G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 550 PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD 609
            I ++  S  + F  + I      G      A    +   +     +        S    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 610 QYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE 669
           Q   +       DL    +      +DL NNR  G +P+ + +L  L             
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH------------ 271

Query: 670 IPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCS 724
                        LN+SFN L G IPQG     F   ++  N  LCG  L   C+
Sbjct: 272 ------------SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.8 bits (208), Expect = 2e-18
 Identities = 68/295 (23%), Positives = 103/295 (34%), Gaps = 13/295 (4%)

Query: 20  SWNKDGDCC--SWDGIICDEMTG--HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLAC 75
           SW    DCC  +W G++CD  T    V  LDLS   L       S+L  L +L  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 76  NDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHT 135
            +     I     + T+L +L ++ +  SG +P  +S++  LV LD S +          
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 136 FNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF 195
            +        L  +  D  ++   +P S  + S          N        I       
Sbjct: 146 SSL-----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANL 197

Query: 196 LRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFD 255
                     +L G+      S                    +G  ++L  LDL      
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSA 310
           G +P  L+ LK L  LN+  N   GE P   GNL +    + A+       PL A
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 63/271 (23%), Positives = 100/271 (36%), Gaps = 10/271 (3%)

Query: 213 TSNWSSPLRILDLSITKFSGK--IPDTIGNLRDLKFLDLYVCY-FDGQVPASLSNLKQLT 269
           T   +  +  LDLS         IP ++ NL  L FL +       G +P +++ L QL 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ 329
            L +     SG  PD    +  L  +  ++   +G LP S  +L  L  +    N+  G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 330 LPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVE 389
           +    S    S L         R+   +     + NL  +DLS N     +         
Sbjct: 165 I--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN----MLEGDASVLFG 218

Query: 390 RISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN 449
              + +  HL   S         LS  +  L + +N++ G  P  +  L  +  LN+S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIP 480
           +L G IPQ   N     +     N+     P
Sbjct: 279 NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 58/293 (19%), Positives = 96/293 (32%), Gaps = 31/293 (10%)

Query: 103 FSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPS 162
           + G++    ++  ++  LDLS              NL K                  +PS
Sbjct: 38  WLGVLCDTDTQTYRVNNLDLSG------------LNLPKPYP---------------IPS 70

Query: 163 SLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI 222
           SL NL   + + +  G   L G  P  I     L  L ++   +        +    L  
Sbjct: 71  SLANLPYLNFLYIG-GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF 282
           LD S    SG +P +I +L +L  +        G +P S  +  +L              
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 283 PDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHL 342
                    L  + L+     G   +   +      + L++N     L        L+ L
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249

Query: 343 KLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVE 395
            L  N + G +P  L  L     L  L++S N L G+I Q        +S+  
Sbjct: 250 DLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 54/316 (17%), Positives = 106/316 (33%), Gaps = 55/316 (17%)

Query: 359 NLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP--FILSSR 416
             + +  +  LDLS   L              +  +   ++   +NL+  +P      ++
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476
           + +L ++   ++G  P  +  + T+  L+ S N+LSG +P  +++  +L  +    N+  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 477 GSIPQIFSKCYDLVA-LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
           G+IP  +     L   + ++ N L GK+PP+ AN     V    N    DA   + +   
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDN 595
                  +                     L  +D+  N   G LP      LK +     
Sbjct: 223 T------QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFL----- 270

Query: 596 DDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655
                                                 ++++S N   G IP + G L  
Sbjct: 271 -------------------------------------HSLNVSFNNLCGEIP-QGGNLQR 292

Query: 656 LKLLNFSHNILRGEIP 671
             +  +++N      P
Sbjct: 293 FDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 4e-17
 Identities = 57/290 (19%), Positives = 101/290 (34%), Gaps = 20/290 (6%)

Query: 214 SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
            +      +LDL   K +        NL++L  L L         P + + L +L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 274 EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH 333
             NQ   E P+      +  R+    +    +   +  N   +  L  +  +  G     
Sbjct: 87  SKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 334 ASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERIS 392
              +  LS++++    +   IP  L       +L EL L  NK+T              +
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGLP-----PSLTELHLDGNKITKVD---AASLKGLNN 196

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
             +L       + +       +  +R L +++NKL  + P  + +   I+ + L NN++S
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255

Query: 453 G------MIPQCLANFDSLSLLDLRKN--QFRGSIPQIFSKCYDLVALNL 494
                    P       S S + L  N  Q+    P  F   Y   A+ L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 9e-16
 Identities = 50/305 (16%), Positives = 90/305 (29%), Gaps = 20/305 (6%)

Query: 393 SVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
              LR +      L+++P  L      L + +NK+T        NL  +  L L NN +S
Sbjct: 9   QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512
            + P   A    L  L L KNQ +    ++     +L        ++   +   L     
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR 572
           +E L     K +         + +L  + +   +                P L  + +  
Sbjct: 129 VE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-------PPSLTELHLDG 180

Query: 573 NGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERV---- 628
           N  T +  A           G + +      N +  +  +   L      L         
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 629 LNIFTTIDLSNNRFEG------MIPKEVGKLSSLKLLNFSHN-ILRGEI-PVELTSLTAL 680
                 + L NN            P    K +S   ++   N +   EI P     +   
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 681 SVLNL 685
           + + L
Sbjct: 301 AAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 45/306 (14%), Positives = 88/306 (28%), Gaps = 40/306 (13%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
           C+D    K+  +         L+L  +  + I                            
Sbjct: 17  CSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFK---------------------- 52

Query: 135 TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFP 194
                  NL  L  L+L N ++  + P +   L    L  L L    L+           
Sbjct: 53  -------NLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKELPEKMPKTLQ 103

Query: 195 FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF 254
            LR        +        N    + +    + K SG        ++ L ++ +     
Sbjct: 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLT 314
                    +   LT L+L+ N+ +         L+ L ++ L+  + +     S  N  
Sbjct: 163 TTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 315 QLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN---LSTSENLVELDL 371
            L  L L+ N+ V      A    +  + L  N +     +        +   +   + L
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 372 SNNKLT 377
            +N + 
Sbjct: 280 FSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 55/311 (17%), Positives = 104/311 (33%), Gaps = 32/311 (10%)

Query: 28  CSWDGIICD---------EMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDF 78
           C    + C          ++      LDL ++ +      +     L +L  L L  N  
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEI--KDGDFKNLKNLHTLILINNKI 67

Query: 79  NGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNN 138
           +       F    KL  L LS +    +       L +L       +   TK  +  FN 
Sbjct: 68  SKI-SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR----VHENEITKVRKSVFNG 122

Query: 139 LAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQ 198
           L  N   +  L  + ++   +   +   +    L  + + +  +     I     P L +
Sbjct: 123 L--NQMIVVELGTNPLKSSGIENGAFQGMK--KLSYIRIADTNIT---TIPQGLPPSLTE 175

Query: 199 LTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV 258
           L L  N +   +  +    + L  L LS    S     ++ N   L+ L L       +V
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 234

Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVF------GNLSKLTRISLAHLNFT-GQLPLSAF 311
           P  L++ K + V+ L +N  S    + F         +  + +SL        ++  S F
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

Query: 312 N-LTQLSLLEL 321
             +   + ++L
Sbjct: 295 RCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 55/294 (18%), Positives = 90/294 (30%), Gaps = 54/294 (18%)

Query: 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477
           R +  SD  L  + P  +        L+L NN ++ +      N  +L  L L  N+   
Sbjct: 13  RVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537
             P  F+    L  L L+ N+L+  LP  +      + L V  N+I          L ++
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTL--QELRVHENEITKVRKSVFNGLNQM 126

Query: 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDD 597
            V+ L +N              +   +L  I I+    T + P     SL          
Sbjct: 127 IVVELGTNPLK--SSGIENGAFQGMKKLSYIRIADTNITTI-PQGLPPSL---------- 173

Query: 598 IDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLK 657
                                              T + L  N+   +    +  L++L 
Sbjct: 174 -----------------------------------TELHLDGNKITKVDAASLKGLNNLA 198

Query: 658 LLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGN 711
            L  S N +       L +   L  L+L+ N+LV            Q      N
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 11/208 (5%)

Query: 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571
           D  +LD+ NNKI +        L  L  L+L +N          P    P  +L  + +S
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLS 87

Query: 572 RNGFTGLLPARYFQSLKAMMHGDN----DDIDLDYMNSAGYDQYYSMILTYKGVDLEMER 627
           +N    L         +  +H +          + +N     +  +  L   G++    +
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 628 VLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSF 687
            +   + I +++     +     G   SL  L+   N +       L  L  L+ L LSF
Sbjct: 148 GMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 688 NQLVGPIPQGKQFDSFQNDSFIGNLGLC 715
           N +               +  + N  L 
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV 232

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 21/117 (17%), Positives = 34/117 (29%)

Query: 633 TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692
             +DL NN+   +   +   L +L  L   +N +    P     L  L  L LS NQL  
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 693 PIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDWK 749
              +  +              +             V     P +     + A+   K
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 6e-17
 Identities = 74/409 (18%), Positives = 128/409 (31%), Gaps = 68/409 (16%)

Query: 65  LHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
           L  +  L     D  G K          LT +N S +  + I P  +  L+KLV + +++
Sbjct: 43  LDQVTTLQA---DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184
           +            NL         +   +        + L   S+ ++  +S  +     
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN-TISDISALSGLTSL 156

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDL 244
           +          L+ L                                      +  L +L
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVS-----------------DISVLAKLTNL 199

Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
           + L           P     L  L  L+L  NQ          +L+ LT + LA+   + 
Sbjct: 200 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
             PLS   LT+L+ L+L  NQ     P        +         D    S L NL+   
Sbjct: 256 LAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-- 311

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD 424
               L L  N ++                                P    ++++ L  ++
Sbjct: 312 ----LTLYFNNISDIS-----------------------------PVSSLTKLQRLFFAN 338

Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
           NK++    SS+ NL+ I +L+  +N +S + P  LAN   ++ L L   
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 2e-16
 Identities = 76/455 (16%), Positives = 137/455 (30%), Gaps = 87/455 (19%)

Query: 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLT 293
             DT   L +     L        V  S ++L Q+T L  +         D    L+ LT
Sbjct: 16  FTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLT 69

Query: 294 RISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRI 353
           +I+ ++   T   PL   NLT+L  + ++ NQ     P                  D   
Sbjct: 70  QINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 354 PSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL 413
              L NL+  E       S+N ++                       +           L
Sbjct: 128 LKNLTNLNRLEL------SSNTISDISALSGLTS----------LQQLSFGNQVTDLKPL 171

Query: 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
           ++      +  +       S +  L+ +E L  +NN +S + P       +L  L L  N
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN 229

Query: 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTAT 533
           Q +       +   +L  L+L +N++       L+    L  L +G N+I++  P     
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAG-- 283

Query: 534 LPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHG 593
                 L   +N           S       L  + +  N  + + P      L+     
Sbjct: 284 ------LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ----- 332

Query: 594 DNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL 653
                                                    +  +NN+        +  L
Sbjct: 333 ----------------------------------------RLFFANNKVSD--VSSLANL 350

Query: 654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
           +++  L+  HN +    P  L +LT ++ L L+  
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 65/358 (18%), Positives = 120/358 (33%), Gaps = 55/358 (15%)

Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS 279
           L+   L I    G     +  L +L  ++          P  L NL +L  + + +NQ +
Sbjct: 49  LQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101

Query: 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL----SLLELSRNQFVGQLPCHAS 335
              P           +    +     L              ++ ++S    +  L   + 
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 336 CLPLSHLKLGGNFLDGRIPSWLFNL-------STSENLVELDLSNNKLTGQIFQLDQWPV 388
              ++ LK   N           N        +   NL  L  +NN+++           
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT-- 219

Query: 389 ERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLS 447
                  L  L +  N L+ +  + S + +  L +++N+++   P  +  L+ +  L L 
Sbjct: 220 ------NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 448 NNSLSGMIP--------------------QCLANFDSLSLLDLRKNQFRGSIPQIFSKCY 487
            N +S + P                      ++N  +L+ L L  N      P   S   
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLT 329

Query: 488 DLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
            L  L   +N++      SLAN  ++  L  G+N+I+D  P   A L R+  L L   
Sbjct: 330 KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 2e-14
 Identities = 65/414 (15%), Positives = 128/414 (30%), Gaps = 61/414 (14%)

Query: 282 FPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSH 341
           F D    L++  +  L   N T  +  +  +L Q++ L+  R           S   + +
Sbjct: 16  FTDT--ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-------KSIDGVEY 64

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDV 401
           L                      NL +++ SNN+LT         P++ ++ +    ++ 
Sbjct: 65  LN---------------------NLTQINFSNNQLTDIT------PLKNLTKLVDILMNN 97

Query: 402 QSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLAN 461
                      L++       ++     +   ++ NL+ +E  + + + +S +       
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 462 FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521
             S                            +++            A   +LE L   NN
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL----------AKLTNLESLIATNN 207

Query: 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPA 581
           +I+D  P        L  L L  N                   L  +D++ N  + L P 
Sbjct: 208 QISDITPLGIL--TNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLAPL 259

Query: 582 RYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNR 641
                L  +  G N   ++  +          +              L   T + L  N 
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNN 318

Query: 642 FEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP 695
              + P  V  L+ L+ L F++N +       L +LT ++ L+   NQ+    P
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 6e-05
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 18  TKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACND 77
           T   N + +    + I       ++  L L  + +         +  L  LQ+L  A N 
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFANNK 340

Query: 78  FNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124
            +     S+    T +  L+   +  S + P  ++ L+++  L L+ 
Sbjct: 341 VSDV---SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 47/296 (15%), Positives = 92/296 (31%), Gaps = 28/296 (9%)

Query: 398 HLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ 457
                   LQ +P  + +  + + +  N+++    +S      +  L L +N L+ +   
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 458 CLANFDSLSLLDLRKNQFRGSI-PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL 516
                  L  LDL  N    S+ P  F     L  L+L+   L+   P        L+ L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 517 DVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT 576
            + +N +          L  L  L L  N            +      L  + + +N   
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL----HSLDRLLLHQNRVA 190

Query: 577 GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTID 636
            + P   F+ L  +M       +L  + +       ++                    + 
Sbjct: 191 HVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRAL------------------QYLR 231

Query: 637 LSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692
           L++N +           + L+    S + +   +P  L       +  L+ N L G
Sbjct: 232 LNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 8e-12
 Identities = 51/310 (16%), Positives = 81/310 (26%), Gaps = 38/310 (12%)

Query: 69  QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPR 128
            K+  +C       +            + L  +  S +  +       L  L L S++  
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 129 TKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPI 188
                           +L                                N  LR   P 
Sbjct: 70  RIDAAAFTGLALLEQLDLSD------------------------------NAQLRSVDPA 99

Query: 189 DIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLD 248
                  L  L L   GL           + L+ L L          DT  +L +L  L 
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPL 308
           L+          +   L  L  L L  N+ +   P  F +L +L  + L   N +     
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 309 SAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVE 368
           +   L  L  L L+ N +V           L   +   + +   +P  L           
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL------ 273

Query: 369 LDLSNNKLTG 378
             L+ N L G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 49/292 (16%), Positives = 88/292 (30%), Gaps = 31/292 (10%)

Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI 482
               L    P  I   +  + + L  N +S +         +L++L L  N         
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 483 FSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV 541
           F+    L  L+L+DN     + P +    G L  L +    + +  P     L  LQ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 542 LRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLD 601
           L+ N+             R    L  + +  N  + + P R F+ L ++           
Sbjct: 136 LQDNALQALP----DDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDR--------- 181

Query: 602 YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNF 661
                              V     R L    T+ L  N    +  + +  L +L+ L  
Sbjct: 182 ---------LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 662 SHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP---QGKQFDSFQNDSFIG 710
           + N    +          L     S +++   +P    G+       +   G
Sbjct: 233 NDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 53/321 (16%), Positives = 86/321 (26%), Gaps = 62/321 (19%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
            VP  +        + L  N+ S      F     LT + L           +   L  L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
             L+LS N  +  +                                   L  L L    L
Sbjct: 83  EQLDLSDNAQLRSVDPA-------------------------TFHGLGRLHTLHLDRCGL 117

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC 436
                 L +                               +++L + DN L      +  
Sbjct: 118 QELGPGLFRGLA---------------------------ALQYLYLQDNALQALPDDTFR 150

Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496
           +L  + +L L  N +S +  +      SL  L L +N+     P  F     L+ L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 497 NELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP 556
           N L      +LA    L+ L + +N              R + L      F G       
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWV--------CDCRARPLWAWLQKFRGSSSEVPC 262

Query: 557 SIKRPFPELRIIDISRNGFTG 577
           S+ +      +  ++ N   G
Sbjct: 263 SLPQRLAGRDLKRLAANDLQG 283

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 7e-09
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477
           R L ++   LT      +  L  + +L+LS+N L  + P  LA    L +L    N    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 478 SIPQIFSKCYDLVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKINDAFPYW---TAT 533
                         L L +N L+       L +C  L +L++  N +             
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 534 LPRLQVLV 541
           LP +  ++
Sbjct: 116 LPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 369 LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLT 428
           L L++  LT  +  L+Q          + HLD+  N L+ LP  L++      +  +   
Sbjct: 3   LHLAHKDLTV-LCHLEQLL-------LVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 429 GEFPSSICNLSTIEYLNLSNNSLSGM-IPQCLANFDSLSLLDLRKNQFRG 477
            E    + NL  ++ L L NN L      Q L +   L LL+L+ N    
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDV 401
           L L    L   +   L  L     +  LDLS+N+L      L       +       L+ 
Sbjct: 3   LHLAHKDL--TVLCHLEQLL---LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 402 QSNLLQRLPFILSSRIRFLSVSDNKLTG-EFPSSICNLSTIEYLNLSNNSLSG 453
                         R++ L + +N+L        + +   +  LNL  NSL  
Sbjct: 58  VD------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 37/278 (13%), Positives = 82/278 (29%), Gaps = 22/278 (7%)

Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG-S 478
           L ++   L  +    + +   I       + +   + +  + F  +  +DL  +     +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 479 IPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG--NNKINDAFPYWTATLPR 536
           +  I S+C  L  L+L    L   +  +LA   +L  L++   +     A     ++  R
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 537 LQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDND 596
           L  L L         +  V          ++                       +   + 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 597 DIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSN-NRFEGMIPKEVGKLSS 655
              +   N    + +    L +                + LS           E+G++ +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQH----------------LSLSRCYDIIPETLLELGEIPT 226

Query: 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGP 693
           LK L     +  G + +   +L  L +    F  +  P
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 9e-08
 Identities = 49/251 (19%), Positives = 94/251 (37%), Gaps = 9/251 (3%)

Query: 41  HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSF 100
            VI      S++     P +  F    +Q ++L+ +    + +     Q +KL +L+L  
Sbjct: 24  GVIAFRCPRSFMDQ---PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 101 SYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV 160
              S  + + +++ S LV L+LS     ++F   T  +    L EL      +     V 
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 161 PSSLLNLSSASLISLS-LGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTS-NWSS 218
            +      + + ++LS       + +    +   P L  L LSD+ +L  +        +
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 219 PLRILDLS-ITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
            L+ L LS       +    +G +  LK L ++    DG +      L     L +  + 
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSH 257

Query: 278 FSGEFPDVFGN 288
           F+       GN
Sbjct: 258 FTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 37/290 (12%), Positives = 76/290 (26%), Gaps = 25/290 (8%)

Query: 165 LNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILD 224
           L+L+  +L     G    +G           +       +  +   L        ++ +D
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-----------VIAFRCPRS-FMDQPLAEHFSPFRVQHMD 52

Query: 225 LSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED--NQFSGE 281
           LS +      +   +     L+ L L        +  +L+    L  LNL          
Sbjct: 53  LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

Query: 282 FPDVFGNLSKLTRISLAHLNFTGQLP-----LSAFNLTQLSLLELSRNQFVGQLPCHASC 336
              +  + S+L  ++L+      +                  L   R             
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 337 LPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVEL 396
              + + L  +                  L  L LS          + +  +E      L
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-----DIIPETLLELGEIPTL 227

Query: 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNL 446
           + L V   +      +L   +  L ++ +  T     +I N    E   +
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 44/265 (16%), Positives = 72/265 (27%), Gaps = 18/265 (6%)

Query: 45  LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104
           LDL+   L            L     +   C      +  +      ++ H++LS S   
Sbjct: 5   LDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 105 GI-VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAK--NLTELRYLLLDNVQMFSVVP 161
              +   +S+ SKL  L L       +      N LAK  NL  L          F++  
Sbjct: 60  VSTLHGILSQCSKLQNLSLE----GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 162 SSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN----WS 217
                     L      +   +            + QL LS           S       
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF-DGQVPASLSNLKQLTVLNLEDN 276
           + + +                  L  L+ L L  CY    +    L  +  L  L +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 277 QFSGEFPDVFGNLSKLTRISLAHLN 301
              G    +   L  L +I+ +H  
Sbjct: 236 VPDGTLQLLKEALPHL-QINCSHFT 259

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSR 323
            L     +    +  +        +L  +T +S      T    +    L  L  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 324 NQFVGQLPC---------HASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
           NQ     P            S  PL ++         +         T    +    +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS 434
            L   + Q+         +         + +    P    S++  L   DNK++    S 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP 190

Query: 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
           + +L  +  ++L NN +S + P  LAN  +L ++ L  NQ
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 18/230 (7%)

Query: 460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519
               +   +   K+    ++ Q  +    +  L+     +       +    +L  L++ 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLL 579
           +N+I        A L  L  +     S +     +  +  +    L +        T L 
Sbjct: 72  DNQI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 580 PARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSN 639
                Q L   ++   +   L  + +  Y    +  ++       + ++    TT+   +
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL----TTLKADD 182

Query: 640 NRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ 689
           N+   + P  +  L +L  ++  +N +    P  L + + L ++ L+ NQ
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 41/223 (18%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 282 FPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSH 341
           FPD    L+   +I+    N T  +  +  +L  ++ L          +        L  
Sbjct: 13  FPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIG 67

Query: 342 LKLGGNFLDGRIPS---WLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRH 398
           L+L  N +    P                  ++S       I  LD    +      L  
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 399 LDVQSNLLQRLPFI-----LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG 453
           L     L   L  I     L+       +S         + + NLS +  L   +N +S 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 454 MIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496
           + P  LA+  +L  + L+ NQ     P   +   +L  + L +
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 28/207 (13%), Positives = 53/207 (25%), Gaps = 15/207 (7%)

Query: 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
            + +    + +      + A+   +  L      +          L  L  L L+ N   
Sbjct: 21  AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGV--QYLNNLIGLELKDNQIT 76

Query: 549 GPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY 608
                           L  I         L        L+++   D     +  +     
Sbjct: 77  DLAP---------LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG 668
                ++         +  +  +     LS    +      +  LS L  L    N +  
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 669 EIPVELTSLTALSVLNLSFNQLVGPIP 695
             P  L SL  L  ++L  NQ+    P
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP 212

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 13/209 (6%)

Query: 70  KLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRT 129
            L + C+  N T +  +       T L+LS +       + +   ++L  L+L       
Sbjct: 12  HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 130 KFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPID 189
                T   L         L    +   ++   ++L++S             L       
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS----------FNRLTSLPLGA 119

Query: 190 IFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249
           +     L++L L  N L T        +  L  L L+    +      +  L +L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQF 278
                   +P        L    L  N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 47/208 (22%)

Query: 387 PVERISSVE-LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLN 445
           P+  +S V     ++     L  LP  L      L +S+N L     +++   + +  LN
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 446 LSNNS---------------------------------------------LSGMIPQCLA 460
           L                                                 L+ +    L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 461 NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520
               L  L L+ N+ +   P + +    L  L+L +N L       L    +L+ L +  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 521 NKINDAFPYWTATLPRLQVLVLRSNSFH 548
           N +    P        L    L  N + 
Sbjct: 182 NSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 10/186 (5%)

Query: 339 LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRH 398
            + L L  N L     + L   +    L +L+L   +               +  +    
Sbjct: 33  TTILHLSENLLYTFSLATLMPYT---RLTQLNLDRAE------LTKLQVDGTLPVLGTLD 83

Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
           L         L       +  L VS N+LT     ++  L  ++ L L  N L  + P  
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 459 LANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDV 518
           L     L  L L  N        + +   +L  L L +N L   +P        L    +
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 519 GNNKIN 524
             N   
Sbjct: 203 HGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 42/220 (19%), Positives = 65/220 (29%), Gaps = 35/220 (15%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
            +P  L   K  T+L+L +N             ++LT+++L     T         L  L
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
             L+LS NQ         +   L+ L +  N L       L  L   + L         L
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC 436
              +                                       LS+++N LT      + 
Sbjct: 140 PPGLLTPTPKL------------------------------EKLSLANNNLTELPAGLLN 169

Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476
            L  ++ L L  NSL   IP+       L    L  N + 
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 31/312 (9%), Positives = 81/312 (25%), Gaps = 35/312 (11%)

Query: 412 ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG----MIPQCLANFDSLSL 467
           I    ++  +++         + +    +++ + LS N++       + + +A+   L +
Sbjct: 5   IEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 468 LDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAF 527
            +           +I      L+   L   +L        A     +   +     +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 528 PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL 587
            +       L      +          V    +  P LR I   RN         + ++ 
Sbjct: 124 EHLYLHNNGLGPQAG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 588 KAMMHGDNDDIDLDYMNSAGYDQYYSMIL------------------TYKGVDLEMERVL 629
           ++        +  + +   G +      L                            +  
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 630 NIFTTIDLSNNRFEGMIPKEVG------KLSSLKLLNFSHNILRGEIPVELTS-----LT 678
                + L++          V       +   L+ L   +N +  +    L +     + 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 679 ALSVLNLSFNQL 690
            L  L L+ N+ 
Sbjct: 303 DLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 41/295 (13%), Positives = 76/295 (25%), Gaps = 26/295 (8%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGE----FPDVFGNLSKLTRISLAHL----------NF 302
            V A L     +  + L  N    E      +   +   L     + +            
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLST 362
              L  +     +L  + LS N F              H  L   +L             
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSV 422
           +  L EL ++         +       R+ +  ++         + L  +   +      
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 423 SDNKLTGEFPSSICNL-STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
               L  E  +    L       N   +  S  +   L ++ +L  L L           
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 482 IFSKCYD------LVALNLNDNELEGKLPPSLA-----NCGDLEVLDVGNNKIND 525
                +       L  L L  NE+E     +L         DL  L++  N+ ++
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 48/297 (16%), Positives = 83/297 (27%), Gaps = 21/297 (7%)

Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
           + RL   L  +   L +++  L+   P    +L   E L  S NSL+  +P+   +  SL
Sbjct: 29  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSL 83

Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD-LEVLDVGNNKIN 524
            + +          P +         L              +    + L+ L      + 
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF 584
                        ++  L   +      N++  +      L  I    N    L   +  
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 585 QSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL-----------EMERVLNIFT 633
             L  +   +N    L  +  +               +L            +   L+   
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 634 TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
                 N     I        SL+ LN S+N L  E+P     L     L  SFN L
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL 316

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 45/307 (14%), Positives = 95/307 (30%), Gaps = 22/307 (7%)

Query: 396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI 455
              L++ +  L  LP +    +  L  S N LT E P    +L ++   N +  +LS + 
Sbjct: 40  AHELELNNLGLSSLPELPPH-LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 456 PQCLANFDSLSLLDLRKNQFRGSIPQIFSK------CYDLVALNLNDNELEGKLPPSLAN 509
           P       S + L+        S  +I             +  +L            L  
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 510 CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID 569
             +L  L       N         L    ++   +     P   N+P +   + +  ++ 
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 570 ISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL 629
              +    L       +    +      +    ++   +     +      ++     + 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 630 NIF------TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVL 683
           ++         +++SNN+    +P        L+ L  S N L  E+P    +L     L
Sbjct: 278 SLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHL-AEVPELPQNLK---QL 329

Query: 684 NLSFNQL 690
           ++ +N L
Sbjct: 330 HVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
               N+ S  I        SL  L++  N+    +P +  +   L  L  + N L  ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
               N   L+ L V  N + + FP    ++  L++
Sbjct: 321 ELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)

Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD 424
           +L EL++SNNKL        +          L  L    N L  +P +  + ++ L V  
Sbjct: 285 SLEELNVSNNKLIELPALPPR----------LERLIASFNHLAEVPELPQN-LKQLHVEY 333

Query: 425 NKLTGEFPSSICNLSTIEYLNLSN 448
           N L  EFP    ++   E L +++
Sbjct: 334 NPLR-EFPDIPESV---EDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI 482
             N  + E  S      ++E LN+SNN L   +P        L  L    N     +P++
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-AEVPEL 322

Query: 483 FSKCYDLVALNLNDNELEGKLPPSLANCGDLEV 515
                 L  L++  N L  + P    +  DL +
Sbjct: 323 PQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 5/226 (2%)

Query: 75  CNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQH 134
           C +   T+I S+         L    +    I     S    L  +++S +      E  
Sbjct: 15  CQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72

Query: 135 TFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFP 194
            F+NL K          + + +      +L NL    + +  + +     +         
Sbjct: 73  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 195 FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF 254
            ++                   S    IL L+               +  +         
Sbjct: 133 DIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHL 300
           +              +L++   +          NL KL   S  +L
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 22/218 (10%), Positives = 49/218 (22%), Gaps = 3/218 (1%)

Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
           ++P+ L   +    L     +        F     L +I ++  +    +    F+    
Sbjct: 22  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 317 SLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
                   +    L  +                +  I               L    + +
Sbjct: 80  LHEI-RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC 436
                + + +      SV L         +    F  +         +N L         
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
             S    L++S   +  +    L N   L        +
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 25/238 (10%), Positives = 66/238 (27%), Gaps = 9/238 (3%)

Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
              IC+ S         + ++  IP  L    +   L     + R      FS   DL  
Sbjct: 2   HHRICHCSN-RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 57

Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN-----S 546
           + ++ N++   +   + +              N  +    A      +  L  +      
Sbjct: 58  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 117

Query: 547 FHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSA 606
                  +         +  I   +    + +  +     L    +G  +  +  +  + 
Sbjct: 118 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ 177

Query: 607 GYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHN 664
             +   S     + +  ++    +    +D+S  R   +    +  L  L+  +  + 
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 403 SNLLQRLP-FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLAN 461
           + L+++   +  + R R L +   K+     +    L   + ++ S+N +          
Sbjct: 5   AELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPL 61

Query: 462 FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG----KLPPSLANCGDLEVLD 517
              L  L +  N+       +     DL  L L +N L          SL +   L +L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 518 VGNNKINDAFPYWTATLPRLQVL 540
                      Y    +P+++VL
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 240 NLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299
           N    + LDL        +    + L Q   ++  DN+      D F  L +L  + + +
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNN 72

Query: 300 LNFTGQLPLSAFNLTQLSLLELSRNQF--VGQLPCHASCLPLSHLKLGGNFLDGRIPSWL 357
                        L  L+ L L+ N    +G L   AS   L++L +  N +  +    L
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 358 FNLSTSENLVELDLS 372
           + +     +  LD  
Sbjct: 133 YVIYKVPQVRVLDFQ 147

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 17/211 (8%)

Query: 478 SIPQIFS--KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
            I QIFS     + +  NL    +      +      ++ +   N+ I          LP
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY--LP 68

Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDN 595
            +  L L  N                   L+ +         +      + LK +     
Sbjct: 69  NVTKLFLNGNKLTDIKP---------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 596 DDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655
           +   +  +N   +      +        ++  +  +     LS    +      +  L+ 
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLS 686
           L+ L  S N +  ++   L  L  L VL L 
Sbjct: 180 LQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 21/210 (10%)

Query: 261 SLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLE 320
           S     +    NL+    +         L+ + +I   + +      +    L  ++ L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLF 74

Query: 321 LSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI 380
           L+ N+            PL++LK  G            +       ++     +     I
Sbjct: 75  LNGNKLTD-------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127

Query: 381 FQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST 440
             L   P                N       +LS   +  ++S           +  L+ 
Sbjct: 128 NGLVHLPQ--------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDL 470
           ++ L LS N +S +  + LA   +L +L+L
Sbjct: 180 LQNLYLSKNHISDL--RALAGLKNLDVLEL 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 217 SSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQ----VPASLSNLKQLTVL 271
           S  ++ LD+   + S     + +  L+  + + L  C         + ++L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 272 NLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ 305
           NL  N+             +     +  L+    
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 393 SVELRHLDVQSNLL--QRLPFILSS--RIRFLSVSDNKLTGE----FPSSICNLSTIEYL 444
           S++++ LD+Q   L   R   +L    + + + + D  LT        S++     +  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRK 472
           NL +N L  +   C+          ++K
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQK 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 45/445 (10%), Positives = 105/445 (23%), Gaps = 20/445 (4%)

Query: 268 LTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAHLNFTGQ----LPLSAFNLTQLSLLELS 322
           +  L+++  + S   + ++   L +   + L     T      +  +      L+ L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 323 RNQFVGQ-LPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIF 381
            N+     + C    L     K+    L     +          L     +   L     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC----GVLSSTLRTLPTLQELHL 119

Query: 382 QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441
             +      +  +    LD Q  L +      S          + L  +       +S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL-NDNELE 500
           +        L   +       ++L L                      +       N+L 
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 501 GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKR 560
                 L          +    I +            +VL  + +     +  N    + 
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 561 PFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKG 620
                  +         L       +     H  +      ++               + 
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 621 VDLEMERVLNIFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILRGEIPVELTS 676
           +   + +  ++   + L++          +   +    SL+ L+ S+N L     ++L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 677 -----LTALSVLNLSFNQLVGPIPQ 696
                   L  L L        +  
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 68  LQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISR----LSKLVALDLS 123
           +Q L++ C + +  + +       +   + L     +      IS        L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMF 157
           S+             L     +++ L L N  + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 415 SRIRFLSVSDNKLTGE----FPSSICNLSTIEYLNLSNNSLSGMIPQCLA-----NFDSL 465
           S +R L ++D  ++        +++    ++  L+LSNN L       L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 466 SLLDLRKNQFRGSIPQI 482
             L L    +   +   
Sbjct: 429 EQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 464 SLSLLDLRKNQFRGS-IPQIFSKCYDLVALNLNDNELEGK----LPPSLANCGDLEVLDV 518
            +  LD++  +   +   ++         + L+D  L       +  +L     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 519 GNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554
            +N++ D   +      +     ++  S        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 414 SSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLL 468
           S  I+ L +   +L+    + +   L   + + L +  L+      I   L    +L+ L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 469 DLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG 501
           +LR N+          +     +  +    L+ 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 512 DLEVLDVGNNKINDA-FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI 570
           D++ LD+   +++DA +      L + QV+ L           ++ S  R  P L  +++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 571 SRNGFTGLLPARYFQSLK 588
             N    +      Q L+
Sbjct: 63  RSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)

Query: 454 MIPQCLANFDSLSLLDLRKNQFRG----SIPQIFSKCYDLVALNLNDNELEGKLPPSLA- 508
           +          L +L L           S+       + L  L+L++N L       L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 509 ----NCGDLEVLDVGNNKINDAFPYWTATL----PRLQVL 540
                   LE L + +   ++        L    P L+V+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 431 FPSSICNLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRGSIPQIFSK- 485
                   S +  L L++  +S      +   L    SL  LDL  N    +      + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 486 ----CYDLVALNLNDNELEGKLPPSLA 508
                  L  L L D     ++   L 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 9e-04
 Identities = 23/98 (23%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 203 DNGLLTGNLPTSNWSSPLRILDLSITKFSGK----IPDTIGNLRDLKFLDLYVCYFDGQV 258
           D G+           S LR+L L+    S      +  T+     L+ LDL         
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 259 PASLS-----NLKQLTVLNLEDNQFSGEFPDVFGNLSK 291
              L          L  L L D  +S E  D    L K
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 483 FSKCYDLVALNLNDNELEGK----LPPSLANCGDLEVLDVGNNKINDAFPYWTATLPR-- 536
                 L  L L D ++       L  +L     L  LD+ NN + DA         R  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 537 ---LQVLVLRSNSFHGPIYNNVPSIKRPFPELRII 568
              L+ LVL    +   + + + ++++  P LR+I
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 38/181 (20%), Positives = 56/181 (30%), Gaps = 9/181 (4%)

Query: 157 FSVVPSSLLNLSSASLISLSL-GNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN 215
              +P  +          L L  N   R          P L +L L  N L         
Sbjct: 20  LKEIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED 275
            +S ++ L L   K           L  LK L+LY       +P S  +L  LT LNL  
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135

Query: 276 NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS 335
           N F+     +      L + SL         P     +  + + +L  ++F         
Sbjct: 136 NPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEG 191

Query: 336 C 336
           C
Sbjct: 192 C 192

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 41/159 (25%), Positives = 58/159 (36%), Gaps = 4/159 (2%)

Query: 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSP-LRILDLSITKFSGKIPDTIGNLRD 243
           E P DI       +L L+DN L   +        P L  L+L   + +G  P+       
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 244 LKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT 303
           ++ L L               L QL  LNL DNQ S   P  F +L+ LT ++LA   F 
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHL 342
               L+ F    L    L+        P     + +  L
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDL 177

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 394 VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG 453
              + LD++   L+  P +++  I  +    + +         N+  +  LNLSNN L  
Sbjct: 22  GSQQALDLKG--LRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 454 M--IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS----- 506
           +  +   +    +L +L+L  N+ +        K   L  L L+ N L            
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139

Query: 507 --LANCGDLEVLD 517
                   L  LD
Sbjct: 140 AIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 9/151 (5%)

Query: 155 QMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTS 214
           +    +   +      S  +L L           D+        L    +   T  +   
Sbjct: 7   EQVEQLKLIMSKRYDGSQQALDLKGL----RSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 215 NWSSPLRILDLSITKFSGK--IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLN 272
           N    L  L+LS  +      +   +    +LK L+L       +         +L  L 
Sbjct: 63  NIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 273 LEDNQFSGEFPDVFGNLSKLTRI--SLAHLN 301
           L+ N  S  F D    +S +      L  L+
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 400 DVQSNLLQRLPFILSSR----IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI 455
           +++   +++L  I+S R     + L +   +        +   +    LN  ++  +  +
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLR----SDPDLVAQNIDVVLNRRSSMAA-TL 57

Query: 456 PQCLANFDSLSLLDLRKNQFRG--SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDL 513
                N   L  L+L  N+      +  I  K  +L  LNL+ NEL+ +          L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 514 EVLDVGNNKINDAFP-------YWTATLPRLQVL 540
           E L +  N ++D F              P+L  L
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	801
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.81

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=6.4e-35  Score=305.49  Aligned_cols=285  Identities=26%  Similarity=0.382  Sum_probs=193.3

Q ss_pred             ccccccccCCC-CCCCCCCCCCCCcc--cceeEeCCCC--CcEEEEEcCCCCCCcc--cCCCcccccCCCCCeeeCCC-C
Q 044830            5 ASSHCDAAVTY-PKTKSWNKDGDCCS--WDGIICDEMT--GHVIGLDLSSSWLLGT--LHPNSTLFLLHHLQKLNLAC-N   76 (801)
Q Consensus         5 ~~~~~~~~~~~-~~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g~--~~~~~~l~~l~~L~~L~Ls~-n   76 (801)
                      |-+..|++..+ ..+++|+.++|||.  |+||.|+..+  +||++|||+++++.|.  +++  +++++++|++|+|++ |
T Consensus        10 aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~--~l~~L~~L~~L~Ls~~N   87 (313)
T d1ogqa_          10 ALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGIN   87 (313)
T ss_dssp             HHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEET
T ss_pred             HHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh--HHhcCcccccccccccc
Confidence            34444554444 36899998899994  9999998653  4899999999999884  556  788888888888876 6


Q ss_pred             CCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccC
Q 044830           77 DFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQM  156 (801)
Q Consensus        77 ~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~  156 (801)
                      .+++. +|..|+++++|++|+|++|++.+..+..+..+.+|++++++.|.  ..   ..+|..+.++++|+.+++++|.+
T Consensus        88 ~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~--~~---~~~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_          88 NLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--LS---GTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             TEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--EE---SCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccc-cccccccccccchhhhccccccccccccccchhhhccccccccc--cc---ccCchhhccCcccceeecccccc
Confidence            77765 77778888888888888888887777777777777777777762  11   33344444454555454444444


Q ss_pred             CCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCC-CEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCc
Q 044830          157 FSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFL-RQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP  235 (801)
Q Consensus       157 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  235 (801)
                                                .+.+|..+..+..+ +.+++++| .+++..+..........++++.+.+.+.+|
T Consensus       162 --------------------------~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         162 --------------------------SGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             --------------------------EEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCG
T ss_pred             --------------------------ccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                                      44444444444333 44444444 222223332322233456666666666777


Q ss_pred             ccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCC
Q 044830          236 DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ  315 (801)
Q Consensus       236 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  315 (801)
                      ..+..+++++.+++++|.+.+.+| .+..+++|++|++++|++++.+|+.|+++++|++|+|++|+++|.+|. ++++++
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~  292 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR  292 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGG
T ss_pred             cccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCC
Confidence            777777777777777777766544 467777777777777777777777777777777777777777777764 466777


Q ss_pred             CCEEEcccccc
Q 044830          316 LSLLELSRNQF  326 (801)
Q Consensus       316 L~~L~l~~n~~  326 (801)
                      |+.+++++|+.
T Consensus       293 L~~l~l~~N~~  303 (313)
T d1ogqa_         293 FDVSAYANNKC  303 (313)
T ss_dssp             SCGGGTCSSSE
T ss_pred             CCHHHhCCCcc
Confidence            77777777763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=8.3e-32  Score=281.65  Aligned_cols=258  Identities=31%  Similarity=0.506  Sum_probs=231.8

Q ss_pred             cccEEEecCCCCCC--CCccccccCCCCCEEECcC-CCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEE
Q 044830          416 RIRFLSVSDNKLTG--EFPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL  492 (801)
Q Consensus       416 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  492 (801)
                      +++.|+++++.+.+  .+|..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            68889999999887  4789999999999999997 88999999999999999999999999999999999999999999


Q ss_pred             ECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCC-CEEEccCCcCcccCCCCCCCCCCCCCCCcEEEcc
Q 044830          493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL-QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS  571 (801)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs  571 (801)
                      ++++|.+.+.+|..+.+++.|+.+++++|++.+.+|..+..+..+ +.+++++|++++..+..+    ..+. ...++++
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~----~~l~-~~~l~l~  205 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF----ANLN-LAFVDLS  205 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG----GGCC-CSEEECC
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc----cccc-ccccccc
Confidence            999999999999999999999999999999999999999888776 889999999998876554    4444 4579999


Q ss_pred             CCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccc
Q 044830          572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG  651 (801)
Q Consensus       572 ~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~  651 (801)
                      ++...+.+|...                                           ..++.++.+++++|.+++.+| .++
T Consensus       206 ~~~~~~~~~~~~-------------------------------------------~~~~~l~~l~~~~~~l~~~~~-~~~  241 (313)
T d1ogqa_         206 RNMLEGDASVLF-------------------------------------------GSDKNTQKIHLAKNSLAFDLG-KVG  241 (313)
T ss_dssp             SSEEEECCGGGC-------------------------------------------CTTSCCSEEECCSSEECCBGG-GCC
T ss_pred             cccccccccccc-------------------------------------------ccccccccccccccccccccc-ccc
Confidence            999988887542                                           114567899999999998766 689


Q ss_pred             ccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCCCCCC
Q 044830          652 KLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQC  723 (801)
Q Consensus       652 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c  723 (801)
                      .+++|+.|+|++|+++|.+|.+|+++++|++|||++|+|+|.||..+.+..++...+.||+.+||.|++ .|
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            999999999999999999999999999999999999999999999888999999999999999999885 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.1e-26  Score=244.93  Aligned_cols=194  Identities=24%  Similarity=0.372  Sum_probs=146.2

Q ss_pred             ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830          432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG  511 (801)
Q Consensus       432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  511 (801)
                      ...+..++.++.+++++|.+++..|  +..+++|++|++++|.++..  ..+..+++|+.|++++|.+++..  .+..++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~  263 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLT  263 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccc
Confidence            3445667778888888888776544  45567788888888877642  35677788888888888887543  367788


Q ss_pred             CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhh
Q 044830          512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM  591 (801)
Q Consensus       512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~  591 (801)
                      +|+.|++++|++.+..+  +..++.++.+.++.|.+.+..      .+..+++++.|++++|++++..|   +.      
T Consensus       264 ~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~ls~n~l~~l~~---l~------  326 (384)
T d2omza2         264 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDISP---VS------  326 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCSCCGG---GG------
T ss_pred             cCCEeeccCcccCCCCc--ccccccccccccccccccccc------ccchhcccCeEECCCCCCCCCcc---cc------
Confidence            88888888888876543  667788888888888876532      13667888999999998886433   11      


Q ss_pred             ccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCC
Q 044830          592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP  671 (801)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  671 (801)
                                                          .++.|+.|++++|++++ +| .++++++|++|++++|++++..|
T Consensus       327 ------------------------------------~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         327 ------------------------------------SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             ------------------------------------GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             ------------------------------------cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence                                                14567899999999985 34 58899999999999999997765


Q ss_pred             ccccCCCCCCeEeCcCC
Q 044830          672 VELTSLTALSVLNLSFN  688 (801)
Q Consensus       672 ~~l~~l~~L~~L~ls~N  688 (801)
                        +.++++|+.|+|++|
T Consensus       369 --l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 --LANLTRITQLGLNDQ  383 (384)
T ss_dssp             --GTTCTTCSEEECCCE
T ss_pred             --hccCCCCCEeeCCCC
Confidence              889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.1e-24  Score=232.24  Aligned_cols=118  Identities=24%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             EcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCC
Q 044830           46 DLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD  125 (801)
Q Consensus        46 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  125 (801)
                      ++...++++.+    ....+.+|++|+++++.++..   +.++.+++|++|+|++|++++..|  ++++++|++|++++|
T Consensus        28 ~l~~~~~~~~~----~~~~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n   98 (384)
T d2omza2          28 VLGKTNVTDTV----SQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   98 (384)
T ss_dssp             HTTCSSTTSEE----CHHHHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HhCCCCCCCcc----CHHHhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc
Confidence            34444454443    345677788888888887653   247778888888888888876533  788888888888887


Q ss_pred             cCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCc
Q 044830          126 IPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR  183 (801)
Q Consensus       126 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~  183 (801)
                      .  +.    .++ .++++++|+.|+++++.+.+..+..  ..  ..+..+....+.+.
T Consensus        99 ~--i~----~i~-~l~~l~~L~~L~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~  145 (384)
T d2omza2          99 Q--IA----DIT-PLANLTNLTGLTLFNNQITDIDPLK--NL--TNLNRLELSSNTIS  145 (384)
T ss_dssp             C--CC----CCG-GGTTCTTCCEEECCSSCCCCCGGGT--TC--TTCSEEEEEEEEEC
T ss_pred             c--cc----ccc-ccccccccccccccccccccccccc--cc--cccccccccccccc
Confidence            3  22    111 2567777777777777665544322  12  34445544444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.7e-22  Score=206.89  Aligned_cols=268  Identities=23%  Similarity=0.291  Sum_probs=131.6

Q ss_pred             CCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccC
Q 044830          220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH  299 (801)
Q Consensus       220 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  299 (801)
                      .+.++-++..++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            455666666665 4555443  4566666666666644444566666666666666666655555566666666666666


Q ss_pred             eeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccc
Q 044830          300 LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ  379 (801)
Q Consensus       300 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~  379 (801)
                      |+++ .+|..  ....++.|++.+|.+                       .+..+..+..   ...+..++...|.....
T Consensus        89 n~l~-~l~~~--~~~~l~~L~~~~n~l-----------------------~~l~~~~~~~---~~~~~~l~~~~n~~~~~  139 (305)
T d1xkua_          89 NQLK-ELPEK--MPKTLQELRVHENEI-----------------------TKVRKSVFNG---LNQMIVVELGTNPLKSS  139 (305)
T ss_dssp             SCCS-BCCSS--CCTTCCEEECCSSCC-----------------------CBBCHHHHTT---CTTCCEEECCSSCCCGG
T ss_pred             CccC-cCccc--hhhhhhhhhccccch-----------------------hhhhhhhhhc---ccccccccccccccccc
Confidence            6555 23322  123445555544444                       3222222222   34445555555443211


Q ss_pred             ccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccc
Q 044830          380 IFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCL  459 (801)
Q Consensus       380 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l  459 (801)
                      ....  ..                       +..+++|+.+++++|.+.. +|..  .+++|++|++++|.+++..+..|
T Consensus       140 ~~~~--~~-----------------------~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~  191 (305)
T d1xkua_         140 GIEN--GA-----------------------FQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASL  191 (305)
T ss_dssp             GBCT--TG-----------------------GGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGG
T ss_pred             CCCc--cc-----------------------cccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHh
Confidence            1000  00                       0112334444444444432 2221  13445555555555554445555


Q ss_pred             cCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchh------ccC
Q 044830          460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYW------TAT  533 (801)
Q Consensus       460 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~------~~~  533 (801)
                      .+++.+++|++++|.+.+..+..|.++++|++|+|++|+++ .+|.++.++++|++|++++|+|+......      ...
T Consensus       192 ~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~  270 (305)
T d1xkua_         192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  270 (305)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             hccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcc
Confidence            55555555555555555444555555555555555555554 33445555555555555555554433222      224


Q ss_pred             CCCCCEEEccCCcCc
Q 044830          534 LPRLQVLVLRSNSFH  548 (801)
Q Consensus       534 l~~L~~L~L~~N~l~  548 (801)
                      .++|+.|+|++|++.
T Consensus       271 ~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         271 KASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCCSEEECCSSSSC
T ss_pred             cCCCCEEECCCCcCc
Confidence            456666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-23  Score=212.33  Aligned_cols=226  Identities=21%  Similarity=0.212  Sum_probs=121.8

Q ss_pred             EEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC-CCcccc
Q 044830          399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR-KNQFRG  477 (801)
Q Consensus       399 L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~-~n~l~~  477 (801)
                      +++++..++.+|...++.+++|+|++|+++...+.+|.+++.|++|++++|.+.+..+..+.++..++.+... .+.+..
T Consensus        16 v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (284)
T ss_dssp             EECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             EEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555544444455555555555554333445555555555555555554444444444455544432 333443


Q ss_pred             cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCC
Q 044830          478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS  557 (801)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  557 (801)
                      ..+..|.++++|++|++++|.+....+..+..+.+|+.+++++|+++++.+..+                          
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--------------------------  149 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--------------------------  149 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------------------------
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh--------------------------
Confidence            334444444555555555554443334444444444444444444444433333                          


Q ss_pred             CCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEc
Q 044830          558 IKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDL  637 (801)
Q Consensus       558 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  637 (801)
                        ..+++|+.|++++|++++..+ ..|.+                                          ++.|+.+++
T Consensus       150 --~~~~~L~~L~l~~N~l~~l~~-~~f~~------------------------------------------l~~L~~l~l  184 (284)
T d1ozna_         150 --RDLGNLTHLFLHGNRISSVPE-RAFRG------------------------------------------LHSLDRLLL  184 (284)
T ss_dssp             --TTCTTCCEEECCSSCCCEECT-TTTTT------------------------------------------CTTCCEEEC
T ss_pred             --ccccchhhcccccCcccccch-hhhcc------------------------------------------ccccchhhh
Confidence              445555555555555553322 11111                                          344566777


Q ss_pred             cCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCC
Q 044830          638 SNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP  695 (801)
Q Consensus       638 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  695 (801)
                      ++|++++..|..|..+++|+.|++++|.+.+..|..|..+++|++|++++|++.+..+
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            7777776667777777777777777777776666677777777777777777766544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=9.1e-22  Score=203.93  Aligned_cols=244  Identities=22%  Similarity=0.243  Sum_probs=145.1

Q ss_pred             cccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCcccc
Q 044830           28 CSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIV  107 (801)
Q Consensus        28 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  107 (801)
                      |.|++|+|+..            +++ ++|+  .+  .+++++|+|++|+++.. .+..|.++++|++|++++|.+....
T Consensus        10 c~~~~~~C~~~------------~L~-~lP~--~l--~~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~i~   71 (305)
T d1xkua_          10 CHLRVVQCSDL------------GLE-KVPK--DL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKIS   71 (305)
T ss_dssp             EETTEEECTTS------------CCC-SCCC--SC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred             ecCCEEEecCC------------CCC-ccCC--CC--CCCCCEEECcCCcCCCc-ChhHhhccccccccccccccccccc
Confidence            78999999752            233 4444  34  26899999999999764 3346999999999999999999888


Q ss_pred             ccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCc--cC
Q 044830          108 PSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR--GE  185 (801)
Q Consensus       108 p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~--~~  185 (801)
                      |..|.++++|++|++++|.  +.    .+|.  .....++.|++.+|.+....+..+...  .....++...+...  ..
T Consensus        72 ~~~f~~l~~L~~L~l~~n~--l~----~l~~--~~~~~l~~L~~~~n~l~~l~~~~~~~~--~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          72 PGAFAPLVKLERLYLSKNQ--LK----ELPE--KMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             TTTTTTCTTCCEEECCSSC--CS----BCCS--SCCTTCCEEECCSSCCCBBCHHHHTTC--TTCCEEECCSSCCCGGGB
T ss_pred             hhhhhCCCccCEecccCCc--cC----cCcc--chhhhhhhhhccccchhhhhhhhhhcc--ccccccccccccccccCC
Confidence            8889999999999999983  22    1221  123466677777776666655555554  55555555554322  12


Q ss_pred             CCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCC
Q 044830          186 FPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNL  265 (801)
Q Consensus       186 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  265 (801)
                      .+..+..+++|+.+++++|                        .++ .+|..+  +++|+.|++++|...+..+..+..+
T Consensus       142 ~~~~~~~l~~L~~l~l~~n------------------------~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~  194 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADT------------------------NIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGL  194 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSS------------------------CCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTC
T ss_pred             CccccccccccCccccccC------------------------Ccc-ccCccc--CCccCEEECCCCcCCCCChhHhhcc
Confidence            2333444555555555554                        333 122211  2444555555554444444445555


Q ss_pred             CCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830          266 KQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV  327 (801)
Q Consensus       266 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~  327 (801)
                      +.+++|++++|.+.+..+..+.++++|++|++++|.++ .+|.++..+++|++|++++|+++
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            55555555555555444445555555555555555554 33444555555555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-22  Score=205.65  Aligned_cols=208  Identities=22%  Similarity=0.216  Sum_probs=141.5

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC-CCcCCCCcchhccCCCCCCEEEc
Q 044830          464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG-NNKINDAFPYWTATLPRLQVLVL  542 (801)
Q Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L  542 (801)
                      ++++|+|++|+++...+..|.++++|++|++++|++.+..+..+.++..++.++.. .|.+.+..+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            44555555555554444445555555555555555554444555555555555443 34444555555666666666666


Q ss_pred             cCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccch
Q 044830          543 RSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVD  622 (801)
Q Consensus       543 ~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (801)
                      ++|.+....+..+    ...++|+.+++++|++++..+ ..|..                                    
T Consensus       113 ~~n~~~~~~~~~~----~~~~~L~~l~l~~N~l~~i~~-~~f~~------------------------------------  151 (284)
T d1ozna_         113 DRCGLQELGPGLF----RGLAALQYLYLQDNALQALPD-DTFRD------------------------------------  151 (284)
T ss_dssp             TTSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCT-TTTTT------------------------------------
T ss_pred             CCccccccccccc----chhcccchhhhccccccccCh-hHhcc------------------------------------
Confidence            6666554333322    567788888888888874333 32222                                    


Q ss_pred             hhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCC
Q 044830          623 LEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFD  701 (801)
Q Consensus       623 ~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~  701 (801)
                            .+.|+.|++++|++++..|..|.++++|+.+++++|++++..|..|..+++|++||+++|.+.+..|.. ....
T Consensus       152 ------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         152 ------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             ------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             ------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence                  356789999999999999999999999999999999999999999999999999999999999876643 2344


Q ss_pred             CcCcCcCCCCCCCCCCC
Q 044830          702 SFQNDSFIGNLGLCGFA  718 (801)
Q Consensus       702 ~~~~~~~~gn~~lcg~~  718 (801)
                      .+....+.||+--|..+
T Consensus       226 ~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         226 ALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCCEEECCSSCEECSGG
T ss_pred             ccCEEEecCCCCCCCcc
Confidence            45555677888777543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.9e-21  Score=193.08  Aligned_cols=200  Identities=23%  Similarity=0.259  Sum_probs=126.3

Q ss_pred             CCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeC
Q 044830          439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDV  518 (801)
Q Consensus       439 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  518 (801)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +| .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            33444555555555 2343332  345555555555554444455555555555555555542 22 2345556666666


Q ss_pred             CCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCC
Q 044830          519 GNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDI  598 (801)
Q Consensus       519 s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~  598 (801)
                      ++|++.+. +..+..+++|+.|++++|.+.+..+..+    ..+.+++.|++++|.++. +|...+.             
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~l~~L~l~~n~l~~-l~~~~~~-------------  145 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL----RGLGELQELYLKGNELKT-LPPGLLT-------------  145 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTT----TTCTTCCEEECTTSCCCC-CCTTTTT-------------
T ss_pred             cccccccc-ccccccccccccccccccccceeecccc----ccccccccccccccccce-ecccccc-------------
Confidence            66655433 3345556666666666666554333322    566777777777777763 3322221             


Q ss_pred             cccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCC
Q 044830          599 DLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT  678 (801)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  678 (801)
                                                   .++.++.+++++|++++..++.|+.+++|++|+|++|+|+ .+|.++..++
T Consensus       146 -----------------------------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         146 -----------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             -----------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             -----------------------------ccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence                                         1345788899999998888888999999999999999998 7888888999


Q ss_pred             CCCeEeCcCCccee
Q 044830          679 ALSVLNLSFNQLVG  692 (801)
Q Consensus       679 ~L~~L~ls~N~l~g  692 (801)
                      +|+.|+|++|++..
T Consensus       196 ~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         196 LLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCSEEECCSCCBCC
T ss_pred             CCCEEEecCCCCCC
Confidence            99999999998865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.6e-20  Score=187.18  Aligned_cols=196  Identities=23%  Similarity=0.224  Sum_probs=103.9

Q ss_pred             eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830          397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR  476 (801)
Q Consensus       397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  476 (801)
                      .+++++++.++.+|...++++++|+|++|++++..+..|.++++|++|+|++|+++.. +                    
T Consensus        13 ~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~--------------------   71 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q--------------------   71 (266)
T ss_dssp             CEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E--------------------
T ss_pred             eEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c--------------------
Confidence            3345555555554433344455555555555543334455555555555555555422 1                    


Q ss_pred             ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830          477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP  556 (801)
Q Consensus       477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  556 (801)
                           .++.+++|++|++++|++++ .+..+.++++|+.|++++|++.+..+..+..+.++++|++++|.+....+..+ 
T Consensus        72 -----~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~-  144 (266)
T d1p9ag_          72 -----VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL-  144 (266)
T ss_dssp             -----CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT-
T ss_pred             -----cccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccc-
Confidence                 12344444555555554442 23344445555555555555555444455555555555555555543332222 


Q ss_pred             CCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEE
Q 044830          557 SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTID  636 (801)
Q Consensus       557 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  636 (801)
                         ..+++|+.+++++|++++..+. .|.                                          .++.|++||
T Consensus       145 ---~~l~~l~~l~l~~N~l~~~~~~-~~~------------------------------------------~l~~L~~L~  178 (266)
T d1p9ag_         145 ---TPTPKLEKLSLANNNLTELPAG-LLN------------------------------------------GLENLDTLL  178 (266)
T ss_dssp             ---TTCTTCCEEECTTSCCSCCCTT-TTT------------------------------------------TCTTCCEEE
T ss_pred             ---cccccchhcccccccccccCcc-ccc------------------------------------------cccccceee
Confidence               4556666666666666643332 111                                          134567777


Q ss_pred             ccCCeeeeeccccccccccCceEeCcCcccc
Q 044830          637 LSNNRFEGMIPKEVGKLSSLKLLNFSHNILR  667 (801)
Q Consensus       637 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  667 (801)
                      |++|+|+ .+|+.+..+++|+.|+|++|.+.
T Consensus       179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            7777777 66777777788888888888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.4e-16  Score=167.86  Aligned_cols=58  Identities=28%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             ccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830          630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ  696 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  696 (801)
                      +.|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|++++|+++ .+|.
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            34566666666665 34433   345666666666666 45532   345666677777665 4553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=6.6e-16  Score=162.67  Aligned_cols=86  Identities=26%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             CCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830          441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN  520 (801)
Q Consensus       441 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  520 (801)
                      ....++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|++++
T Consensus       266 ~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~  333 (353)
T d1jl5a_         266 LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY  333 (353)
T ss_dssp             CCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             hcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence            44556666655532    223567777777777776 44533   457777777777776 44532   45677888888


Q ss_pred             CcCCCCcchhccCCCCCCEEEc
Q 044830          521 NKINDAFPYWTATLPRLQVLVL  542 (801)
Q Consensus       521 n~i~~~~~~~~~~l~~L~~L~L  542 (801)
                      |++.. +|..   ..+|+.|.+
T Consensus       334 N~L~~-lp~~---~~~L~~L~~  351 (353)
T d1jl5a_         334 NPLRE-FPDI---PESVEDLRM  351 (353)
T ss_dssp             SCCSS-CCCC---CTTCCEEEC
T ss_pred             CcCCC-CCcc---ccccCeeEC
Confidence            87754 3432   235666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.8e-21  Score=208.19  Aligned_cols=393  Identities=18%  Similarity=0.127  Sum_probs=185.0

Q ss_pred             CCCEEEccCccCcccC-cccccCCCCCCEEEcccccCcc----cCcccccCCCCCCEEEcCCCCCcccc----Ccccc-C
Q 044830          219 PLRILDLSITKFSGKI-PDTIGNLRDLKFLDLYVCYFDG----QVPASLSNLKQLTVLNLEDNQFSGEF----PDVFG-N  288 (801)
Q Consensus       219 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~~~-~  288 (801)
                      +|++||++++++++.. ...+..++++++|+|++|.++.    .+...+..+++|++|+|++|.++...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4666777777666422 2334556677777777776653    23344566777777777777765321    12221 1


Q ss_pred             CCCCcEeeccCeeeeee----CCccCcCCCCCCEEEcccccccccCCCCC------CCCCCCEEEccCCcCCcccc-hhh
Q 044830          289 LSKLTRISLAHLNFTGQ----LPLSAFNLTQLSLLELSRNQFVGQLPCHA------SCLPLSHLKLGGNFLDGRIP-SWL  357 (801)
Q Consensus       289 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~~~~~------~~~~L~~L~L~~n~l~~~~~-~~~  357 (801)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+      ..............+..... ...
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23577777777776542    23445566777777777776643211000      11122333333332221110 011


Q ss_pred             cCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCC----Ccc
Q 044830          358 FNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE----FPS  433 (801)
Q Consensus       358 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~  433 (801)
                      ..+.....++.++++++.............+.                      ........+++..+.+...    ...
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLK----------------------DSPCQLEALKLESCGVTSDNCRDLCG  220 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH----------------------HSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc----------------------cccccccccccccccccchhhhcccc
Confidence            11112456667777666543211000000000                      0011223344444433211    111


Q ss_pred             ccccCCCCCEEECcCCCCccc-----CCccccCCCCCCEEeCCCCcccccC----CccccCCCCccEEECCCCcCCCCCC
Q 044830          434 SICNLSTIEYLNLSNNSLSGM-----IPQCLANFDSLSLLDLRKNQFRGSI----PQIFSKCYDLVALNLNDNELEGKLP  504 (801)
Q Consensus       434 ~l~~l~~L~~L~Ls~n~i~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~  504 (801)
                      .+...+.++.+++++|.+...     .+........++.+++++|.+....    ...+...+.++.+++++|.+.....
T Consensus       221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~  300 (460)
T d1z7xw1         221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  300 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             cccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            223345555666665554321     1222233445666666666554221    1223345556666666666542111


Q ss_pred             cc----c-cCCCCCcEEeCCCCcCCCCcch----hccCCCCCCEEEccCCcCcccCCCCCCCCC-CCCCCCcEEEccCCc
Q 044830          505 PS----L-ANCGDLEVLDVGNNKINDAFPY----WTATLPRLQVLVLRSNSFHGPIYNNVPSIK-RPFPELRIIDISRNG  574 (801)
Q Consensus       505 ~~----l-~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~l~~L~~LdLs~N~  574 (801)
                      ..    + .....|+.+++++|.+......    .+...++|++|+|++|++.+.....++..+ ...+.|++|+|++|+
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            11    1 1234566666666666543322    223445677777777766532111111111 234567777777777


Q ss_pred             CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccc----
Q 044830          575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV----  650 (801)
Q Consensus       575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l----  650 (801)
                      ++..-...+...+                                       ...+.|++|||++|+|+......|    
T Consensus       381 i~~~~~~~l~~~l---------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         381 VSDSSCSSLAATL---------------------------------------LANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             CCHHHHHHHHHHH---------------------------------------HHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHH---------------------------------------hcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence            7632111111111                                       123556777777777765432222    


Q ss_pred             c-ccccCceEeCcCccccccCCc
Q 044830          651 G-KLSSLKLLNFSHNILRGEIPV  672 (801)
Q Consensus       651 ~-~l~~L~~L~Ls~N~l~~~ip~  672 (801)
                      . +.+.|+.|++++|.+....+.
T Consensus       422 ~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             TSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HhCCCccCEEECCCCCCCHHHHH
Confidence            2 234678888888877654433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.5e-20  Score=203.72  Aligned_cols=390  Identities=19%  Similarity=0.142  Sum_probs=219.9

Q ss_pred             CCCEEEcccccCcccC-cccccCCCCCCEEEcCCCCCccc----cCccccCCCCCcEeeccCeeeeee----CCccCc-C
Q 044830          243 DLKFLDLYVCYFDGQV-PASLSNLKQLTVLNLEDNQFSGE----FPDVFGNLSKLTRISLAHLNFTGQ----LPLSAF-N  312 (801)
Q Consensus       243 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~-~  312 (801)
                      +|+.||++++++++.. .+.+..++++++|+|++|.++..    ++..+..+++|++|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5778888888876532 23345567777888888777632    234456667777777777766421    111121 1


Q ss_pred             CCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCccccc
Q 044830          313 LTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERIS  392 (801)
Q Consensus       313 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  392 (801)
                      ..+|++|++++|.+++....                   .++..   +..+++|++|++++|.+.............. .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~-------------------~l~~~---l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~-~  139 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCG-------------------VLSST---LRTLPTLQELHLSDNLLGDAGLQLLCEGLLD-P  139 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHH-------------------HHHHH---TTSCTTCCEEECCSSBCHHHHHHHHHHHHTS-T
T ss_pred             CCCCCEEECCCCCccccccc-------------------cccch---hhccccccccccccccchhhhhhhhhhcccc-c
Confidence            23566666666655432100                   01111   1124445555555554432111000000000 0


Q ss_pred             ceeeeEEEecCCCCCCCCC-------CccccccEEEecCCCCCCCC----cccc-ccCCCCCEEECcCCCCccc----CC
Q 044830          393 SVELRHLDVQSNLLQRLPF-------ILSSRIRFLSVSDNKLTGEF----PSSI-CNLSTIEYLNLSNNSLSGM----IP  456 (801)
Q Consensus       393 ~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~Ls~n~i~~~----~~  456 (801)
                      ...................       .....++.++++++......    ...+ ........+++..+.+...    ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (460)
T d1z7xw1         140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  219 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence            0011122222222111110       01346677777777654211    1111 1234567788888876532    12


Q ss_pred             ccccCCCCCCEEeCCCCcccc-----cCCccccCCCCccEEECCCCcCCCC----CCccccCCCCCcEEeCCCCcCCCCc
Q 044830          457 QCLANFDSLSLLDLRKNQFRG-----SIPQIFSKCYDLVALNLNDNELEGK----LPPSLANCGDLEVLDVGNNKINDAF  527 (801)
Q Consensus       457 ~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~  527 (801)
                      ..+...+.++.+++.+|.+..     ..+..+.....++.+++++|.+...    ....+...+.++.+++++|.+.+..
T Consensus       220 ~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             ccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            234566789999999987643     2233445577899999999988643    2234556788999999999886433


Q ss_pred             chhc-----cCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccc
Q 044830          528 PYWT-----ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY  602 (801)
Q Consensus       528 ~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~  602 (801)
                      ...+     .....|+.+++++|.+.......+.......++|++|||++|++++.....+...+.              
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~--------------  365 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG--------------  365 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT--------------
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh--------------
Confidence            2222     235689999999998775433333222345678999999999886432211111111              


Q ss_pred             cccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeee----ccccccccccCceEeCcCccccccCCccc----
Q 044830          603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILRGEIPVEL----  674 (801)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l----  674 (801)
                                              +..+.|+.|+|++|.|+..    +++.+...++|++|||++|+++......+    
T Consensus       366 ------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         366 ------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             ------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             ------------------------cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence                                    1134588999999999753    45667778999999999999886433332    


Q ss_pred             c-CCCCCCeEeCcCCcceec
Q 044830          675 T-SLTALSVLNLSFNQLVGP  693 (801)
Q Consensus       675 ~-~l~~L~~L~ls~N~l~g~  693 (801)
                      . +.+.|+.|++++|++...
T Consensus       422 ~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             TSTTCCCCEEECTTCCCCHH
T ss_pred             HhCCCccCEEECCCCCCCHH
Confidence            2 345799999999988654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.4e-17  Score=163.58  Aligned_cols=207  Identities=21%  Similarity=0.332  Sum_probs=149.5

Q ss_pred             cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      ++..++++.+++++..  .+.++.+|+.|++.+|.++.. + .+..+++|++|++++|.+++..|  +..+++|++++++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            3444556666666543  345677788888888888743 3 47788888888888888875433  7778888888888


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF  575 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l  575 (801)
                      +|.++. + ..+.++++|+.++++++...+..+  +...+.++.+.++++.+....+      +..+++|+.|++++|.+
T Consensus        94 ~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~------~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2          94 GNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             SCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCC
T ss_pred             cccccc-c-ccccccccccccccccccccccch--hccccchhhhhchhhhhchhhh------hcccccccccccccccc
Confidence            888763 3 357788888888888887765433  5567788888888887664332      25677888888888887


Q ss_pred             CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830          576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS  655 (801)
Q Consensus       576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  655 (801)
                      .+..+   +.                                          .++.|+.|||++|++++. | .++++++
T Consensus       164 ~~~~~---l~------------------------------------------~l~~L~~L~Ls~n~l~~l-~-~l~~l~~  196 (227)
T d1h6ua2         164 SDLTP---LA------------------------------------------NLSKLTTLKADDNKISDI-S-PLASLPN  196 (227)
T ss_dssp             CCCGG---GT------------------------------------------TCTTCCEEECCSSCCCCC-G-GGGGCTT
T ss_pred             ccchh---hc------------------------------------------ccccceecccCCCccCCC-h-hhcCCCC
Confidence            64322   11                                          145678999999998864 3 3788999


Q ss_pred             CceEeCcCccccccCCccccCCCCCCeEeCcC
Q 044830          656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSF  687 (801)
Q Consensus       656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  687 (801)
                      |++|+|++|++++..|  ++++++|++|++++
T Consensus       197 L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            9999999999986543  88999999999873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.8e-17  Score=160.15  Aligned_cols=223  Identities=16%  Similarity=0.111  Sum_probs=130.0

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccC-CccccCCCCCCEEeCCC-
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI-PQCLANFDSLSLLDLRK-  472 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~-  472 (801)
                      ..+.+++++..++.+|...++++++|++++|.++...+..|.++++|++|++++|.+...+ +.+|.+++.++++.+.. 
T Consensus         9 ~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1           9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             CSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             cCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3456677777777666555566777777777776444445667777777777777665433 34566666666666543 


Q ss_pred             CcccccCCccccCCCCccEEECCCCcCCCCCCc-cccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830          473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP-SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI  551 (801)
Q Consensus       473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  551 (801)
                      |.+....+..|.++++|+++++++|.+....+. .+..+..+..+..+++.+....+..+.++                 
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~-----------------  151 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-----------------  151 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS-----------------
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc-----------------
Confidence            455555556666666666666666666532221 12223333333334444333222222221                 


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhccc
Q 044830          552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI  631 (801)
Q Consensus       552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  631 (801)
                                ...++.|++++|+++. ++...+..                                          ...
T Consensus       152 ----------~~~l~~L~l~~n~l~~-i~~~~~~~------------------------------------------~~l  178 (242)
T d1xwdc1         152 ----------SFESVILWLNKNGIQE-IHNCAFNG------------------------------------------TQL  178 (242)
T ss_dssp             ----------BSSCEEEECCSSCCCE-ECTTTTTT------------------------------------------CCE
T ss_pred             ----------cccceeeecccccccc-cccccccc------------------------------------------hhh
Confidence                      2356667777777663 22221110                                          112


Q ss_pred             ceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcC
Q 044830          632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSF  687 (801)
Q Consensus       632 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  687 (801)
                      .+.+++++|+++...+..|.++++|++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            23456777888765566688888888899988888865566677777777766644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.4e-16  Score=151.62  Aligned_cols=187  Identities=20%  Similarity=0.329  Sum_probs=151.1

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +.+|+.|++.+|.++. + ..+..+++|++|++++|.+++..|  +.++++|+++++++|.++. + ..+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            5789999999999885 3 358899999999999999986544  7889999999999998873 3 3578899999999


Q ss_pred             CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830          494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN  573 (801)
Q Consensus       494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N  573 (801)
                      ++++...+.  ..+...+.++.+.++++.+....+  +..+++|+.|++++|.+.+..+      +..+++|+.|++++|
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDN  183 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchhhh--hccccccccccccccccccchh------hcccccceecccCCC
Confidence            999988654  346778899999999998866543  6678999999999998875332      367899999999999


Q ss_pred             cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830          574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL  653 (801)
Q Consensus       574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  653 (801)
                      ++++ +|.  +.                                          .+++|++|+|++|++++..|  ++++
T Consensus       184 ~l~~-l~~--l~------------------------------------------~l~~L~~L~Ls~N~lt~i~~--l~~l  216 (227)
T d1h6ua2         184 KISD-ISP--LA------------------------------------------SLPNLIEVHLKNNQISDVSP--LANT  216 (227)
T ss_dssp             CCCC-CGG--GG------------------------------------------GCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred             ccCC-Chh--hc------------------------------------------CCCCCCEEECcCCcCCCCcc--cccC
Confidence            9975 331  11                                          24678999999999996543  8999


Q ss_pred             ccCceEeCcC
Q 044830          654 SSLKLLNFSH  663 (801)
Q Consensus       654 ~~L~~L~Ls~  663 (801)
                      ++|+.|++++
T Consensus       217 ~~L~~L~lsn  226 (227)
T d1h6ua2         217 SNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEeeC
Confidence            9999999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=5.3e-17  Score=154.66  Aligned_cols=174  Identities=22%  Similarity=0.289  Sum_probs=135.0

Q ss_pred             eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCC-CccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830          395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE-FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN  473 (801)
Q Consensus       395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  473 (801)
                      ..+.++++++.++.+|...++++++|+|++|+|++. .+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            456788888888888877778899999999999764 4566788999999999999998888888888999999999999


Q ss_pred             cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCC
Q 044830          474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIY  552 (801)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  552 (801)
                      ++....+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|.+..... .++.  ..++.+.+..+.+....|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC
Confidence            9998888889999999999999999988888888899999999999998865332 2221  123444555666554433


Q ss_pred             CCCCCCCCCCCCCcEEEccCCcCCc
Q 044830          553 NNVPSIKRPFPELRIIDISRNGFTG  577 (801)
Q Consensus       553 ~~~~~~~~~l~~L~~LdLs~N~l~~  577 (801)
                             ..+..++.+||+.|.+.-
T Consensus       167 -------~~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         167 -------SKVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             -------TTTTTSBGGGSCTTTCCC
T ss_pred             -------hhhcCCEeeecCHhhCcC
Confidence                   234556677788777753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2.5e-16  Score=149.90  Aligned_cols=131  Identities=21%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             EEECcCCCCcccCCccccCCCCCCEEeCCCCccccc-CCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830          443 YLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS-IPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       443 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      +++.++++++ .+|..+.  +++++|+|++|++++. .+..|..+++|+.|+|++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4444444444 2333221  3455555555555432 2334455555555555555555555555555555555555555


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830          522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP  580 (801)
Q Consensus       522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  580 (801)
                      ++....+.+|.++++|++|+|++|++++..+..+    ..+++|++|+|++|++....+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f----~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHh----cCCcccccccccccccccccc
Confidence            5555555555555555555555555554433333    556666666776666654433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.2e-16  Score=150.56  Aligned_cols=181  Identities=21%  Similarity=0.304  Sum_probs=103.6

Q ss_pred             EEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcC
Q 044830          420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL  499 (801)
Q Consensus       420 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  499 (801)
                      ..+..+.+++.++.  ..+.+|++|++++|.+++..  .+..+++|++|++++|++++..  .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            34455555544332  24556667777777666432  2556666666666666665432  245566666666666666


Q ss_pred             CCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccC
Q 044830          500 EGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLL  579 (801)
Q Consensus       500 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  579 (801)
                      ++ +| .+.++++|+.|++++|.+...  ..+                            ..+++++.+++++|.+++..
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l----------------------------~~l~~l~~l~~~~n~l~~~~  150 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGL----------------------------VHLPQLESLYLGNNKITDIT  150 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC--GGG----------------------------GGCTTCCEEECCSSCCCCCG
T ss_pred             cc-cc-ccccccccccccccccccccc--ccc----------------------------cccccccccccccccccccc
Confidence            53 22 355555555565555554332  123                            34455555555555554321


Q ss_pred             cHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceE
Q 044830          580 PARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLL  659 (801)
Q Consensus       580 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L  659 (801)
                      +   +                                          ..++.|+.+++++|++++..  .++++++|+.|
T Consensus       151 ~---~------------------------------------------~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L  183 (210)
T d1h6ta2         151 V---L------------------------------------------SRLTKLDTLSLEDNQISDIV--PLAGLTKLQNL  183 (210)
T ss_dssp             G---G------------------------------------------GGCTTCSEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             c---c------------------------------------------cccccccccccccccccccc--cccCCCCCCEE
Confidence            1   0                                          11345677777777776543  26777888888


Q ss_pred             eCcCccccccCCccccCCCCCCeEeCcC
Q 044830          660 NFSHNILRGEIPVELTSLTALSVLNLSF  687 (801)
Q Consensus       660 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  687 (801)
                      +|++|+++. +| .++++++|++|+|++
T Consensus       184 ~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            888888774 44 477888888887753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.2e-15  Score=147.42  Aligned_cols=139  Identities=24%  Similarity=0.307  Sum_probs=107.2

Q ss_pred             EecCCCCCCCCCC-ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccccc
Q 044830          400 DVQSNLLQRLPFI-LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS  478 (801)
Q Consensus       400 ~l~~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  478 (801)
                      .+..+.+.+.... .+.+++.|++++|.++..  ..+..+++|++|++++|++++..  .++.+++|++|++++|++++ 
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-  104 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-  104 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-
Confidence            4455555554432 377899999999999854  24788999999999999999654  36889999999999999985 


Q ss_pred             CCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830          479 IPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       479 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~  548 (801)
                      ++ .+..+++|+.|++++|.+..  ...+.+++.++.+++++|.+.+.  ..+..+++|+++++++|++.
T Consensus       105 l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         105 LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             cc-cccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccc
Confidence            44 58889999999999999863  34688899999999999998653  23445555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.9e-15  Score=144.57  Aligned_cols=178  Identities=21%  Similarity=0.337  Sum_probs=95.0

Q ss_pred             EEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCc
Q 044830          419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE  498 (801)
Q Consensus       419 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  498 (801)
                      ...++.+.+++.++  ...+.++++|++++|.++..  +.++.+++|++|++++|++++..|  ++++++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence            34455555554322  23455666666666666532  235556666666666666654322  5555566666666655


Q ss_pred             CCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCcc
Q 044830          499 LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL  578 (801)
Q Consensus       499 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  578 (801)
                      +... + .+.+++.|+.|++++|.+....  .+                            ..+++|+.|++++|++.. 
T Consensus        96 ~~~~-~-~l~~l~~L~~L~l~~~~~~~~~--~~----------------------------~~l~~L~~L~l~~n~l~~-  142 (199)
T d2omxa2          96 IADI-T-PLANLTNLTGLTLFNNQITDID--PL----------------------------KNLTNLNRLELSSNTISD-  142 (199)
T ss_dssp             CCCC-G-GGTTCTTCSEEECCSSCCCCCG--GG----------------------------TTCTTCSEEECCSSCCCC-
T ss_pred             cccc-c-cccccccccccccccccccccc--cc----------------------------chhhhhHHhhhhhhhhcc-
Confidence            5422 2 2455555555555555543321  13                            344555555555555542 


Q ss_pred             CcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCce
Q 044830          579 LPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKL  658 (801)
Q Consensus       579 ~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  658 (801)
                      +|.  +.                                          .++.++.|++++|++++..  .++++++|+.
T Consensus       143 ~~~--l~------------------------------------------~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~  176 (199)
T d2omxa2         143 ISA--LS------------------------------------------GLTSLQQLNFSSNQVTDLK--PLANLTTLER  176 (199)
T ss_dssp             CGG--GT------------------------------------------TCTTCSEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             ccc--cc------------------------------------------ccccccccccccccccCCc--cccCCCCCCE
Confidence            221  10                                          1234566666666666432  3667777777


Q ss_pred             EeCcCccccccCCccccCCCCCCeE
Q 044830          659 LNFSHNILRGEIPVELTSLTALSVL  683 (801)
Q Consensus       659 L~Ls~N~l~~~ip~~l~~l~~L~~L  683 (801)
                      |++++|++++ +| .++++++|+.|
T Consensus       177 L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             EECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7777777764 33 36666766654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.7e-15  Score=147.80  Aligned_cols=74  Identities=12%  Similarity=0.177  Sum_probs=35.1

Q ss_pred             CEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeC-CccCcCCCCCCEEEc
Q 044830          245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQL-PLSAFNLTQLSLLEL  321 (801)
Q Consensus       245 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l  321 (801)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+...+ +..+..+++++++.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            44555555544 3443332  34555555555555433344555555555555555444322 223344445555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.4e-14  Score=138.46  Aligned_cols=176  Identities=22%  Similarity=0.269  Sum_probs=103.4

Q ss_pred             EcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCC
Q 044830           46 DLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD  125 (801)
Q Consensus        46 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n  125 (801)
                      +++.+.+++.+    ....+.++++|++++|.++..  . .++.+++|++|++++|++++..|  ++++++|++|++++|
T Consensus        24 ~l~~~~~~~~~----~~~~l~~l~~L~l~~~~i~~l--~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          24 VLGKTNVTDTV----SQTDLDQVTTLQADRLGIKSI--D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HTTCSSTTSEE----CHHHHTTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HhCCCCCCCcc----CHHHhcCCCEEECCCCCCCCc--c-ccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            34444444432    334567777777777777643  2 36777777777777777775433  777777777777776


Q ss_pred             cCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCC
Q 044830          126 IPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNG  205 (801)
Q Consensus       126 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  205 (801)
                      .  ..    .++ .+.++++|+.|+++++.                          ....  ..+..+++|+.|++++|+
T Consensus        95 ~--~~----~~~-~l~~l~~L~~L~l~~~~--------------------------~~~~--~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2          95 Q--IA----DIT-PLANLTNLTGLTLFNNQ--------------------------ITDI--DPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             C--CC----CCG-GGTTCTTCSEEECCSSC--------------------------CCCC--GGGTTCTTCSEEECCSSC
T ss_pred             c--cc----ccc-ccccccccccccccccc--------------------------cccc--cccchhhhhHHhhhhhhh
Confidence            2  11    111 24445555555554444                          3321  234455566666666653


Q ss_pred             CCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEE
Q 044830          206 LLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVL  271 (801)
Q Consensus       206 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  271 (801)
                      +.  .++....+++|++|++++|.+++. + .++++++|++|++++|++++ ++ .++++++|++|
T Consensus       140 l~--~~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         140 IS--DISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CC--CCGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hc--ccccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            32  133333566666777777666642 2 36777788888888887764 33 46777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=153.02  Aligned_cols=116  Identities=22%  Similarity=0.164  Sum_probs=67.8

Q ss_pred             CCCCEEeccCCC--CCccCCCCCC-CCCCCCEEEccCc-cCcccCcccccCCCCCCEEEcccc-cCcccCcccccCCCCC
Q 044830          194 PFLRQLTLSDNG--LLTGNLPTSN-WSSPLRILDLSIT-KFSGKIPDTIGNLRDLKFLDLYVC-YFDGQVPASLSNLKQL  268 (801)
Q Consensus       194 ~~L~~L~Ls~n~--~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L  268 (801)
                      ++|+.|+++++.  +....+.... .+++|++|++++| .+++.....+.++++|++|++++| .+++.....++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            456666665541  1111122222 4566777777765 466666677778888888888885 5666556667888888


Q ss_pred             CEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcC
Q 044830          269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN  312 (801)
Q Consensus       269 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  312 (801)
                      +.|+++++--.+.++.....+++|+   +..+.++...++.+++
T Consensus       228 ~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         228 KTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             CEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             CEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            8888888722222222223455544   4556666554544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.7e-15  Score=150.37  Aligned_cols=181  Identities=18%  Similarity=0.204  Sum_probs=95.7

Q ss_pred             CCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCC-cCccCC-CccCC
Q 044830          114 LSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNC-FLRGEF-PIDIF  191 (801)
Q Consensus       114 l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n-~l~~~~-~~~l~  191 (801)
                      ..+|++||++++.    +....+...+.++++|++|+++++.+.+..+..+..+  ++|++|++++| .+++.. ..-..
T Consensus        45 ~~~L~~LdLs~~~----i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          45 PFRVQHMDLSNSV----IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             CBCCCEEECTTCE----ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC--TTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCCEEECCCCc----cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcC--CCCcCccccccccccccccchhhH
Confidence            3455555555441    1122334445555666666666665555555555555  66666666664 233211 11123


Q ss_pred             CCCCCCEEeccCCCCCcc-CCCCCC--CCCCCCEEEccCc--cCccc-CcccccCCCCCCEEEccccc-CcccCcccccC
Q 044830          192 HFPFLRQLTLSDNGLLTG-NLPTSN--WSSPLRILDLSIT--KFSGK-IPDTIGNLRDLKFLDLYVCY-FDGQVPASLSN  264 (801)
Q Consensus       192 ~l~~L~~L~Ls~n~~~~~-~~~~~~--~~~~L~~L~Ls~n--~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~  264 (801)
                      .+++|++|++++|...+. .+....  .++.|+.|+++++  .++.. +...+.++++|++|++++|. +++.....+.+
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            567777887777633221 111111  3456777777754  23321 22223456677777776653 55555556666


Q ss_pred             CCCCCEEEcCCC-CCccccCccccCCCCCcEeeccCe
Q 044830          265 LKQLTVLNLEDN-QFSGEFPDVFGNLSKLTRISLAHL  300 (801)
Q Consensus       265 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n  300 (801)
                      +++|++|++++| .+++.....++++++|+.|+++++
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666777777664 455444445556666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=1.4e-14  Score=151.83  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             ccCCCCCEEECcCCCCccc----CCccccCCCCCCEEeCCCCcccccCCcc-------------ccCCCCccEEECCCCc
Q 044830          436 CNLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRGSIPQI-------------FSKCYDLVALNLNDNE  498 (801)
Q Consensus       436 ~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~  498 (801)
                      ..+++|+.|++++|.++..    +...+...++|++|++++|.+.......             ....+.|+.+++++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3445555555555555432    1222334455555555555543211000             1234455556665555


Q ss_pred             CCCC----CCccccCCCCCcEEeCCCCcCCCC-----cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEE
Q 044830          499 LEGK----LPPSLANCGDLEVLDVGNNKINDA-----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID  569 (801)
Q Consensus       499 l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~Ld  569 (801)
                      +...    +...+..++.|+.|++++|++...     +...+..+++|+.|+|++|.++......+...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            5421    112234455566666666655431     1122334445555555555443221111111123444555555


Q ss_pred             ccCCcCC
Q 044830          570 ISRNGFT  576 (801)
Q Consensus       570 Ls~N~l~  576 (801)
                      |++|.++
T Consensus       250 Ls~n~i~  256 (344)
T d2ca6a1         250 LNDCLLS  256 (344)
T ss_dssp             CTTCCCC
T ss_pred             hhcCccC
Confidence            5555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-13  Score=126.07  Aligned_cols=131  Identities=21%  Similarity=0.160  Sum_probs=79.5

Q ss_pred             cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCc
Q 044830          435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE  514 (801)
Q Consensus       435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  514 (801)
                      +.++..+++|+|++|+|+. ++..+..+++|++|++++|.++..  +.|..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4455566777777777763 345555666777777777776633  2366677777777777777655444456677777


Q ss_pred             EEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEE
Q 044830          515 VLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID  569 (801)
Q Consensus       515 ~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~Ld  569 (801)
                      +|++++|++..... ..+..+++|++|++++|+++... ..-+..+..+|+|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~-~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccccc-chHHHHHHHCCCcCeeC
Confidence            77777777755432 34566677777777777665321 10001124566777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=7e-14  Score=146.27  Aligned_cols=42  Identities=17%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             ccccCCCCCeeeCCCCCCCCCc---ccccccCCCCCCEEeCCCCC
Q 044830           61 TLFLLHHLQKLNLACNDFNGTK---ISSNFGQFTKLTHLNLSFSY  102 (801)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~Ls~n~  102 (801)
                      ++.....|+.|+|++|.+....   +...+...++|+.|+++++.
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            3445566666666666554321   22334455566666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=9.6e-13  Score=114.16  Aligned_cols=101  Identities=25%  Similarity=0.358  Sum_probs=52.3

Q ss_pred             EEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCc
Q 044830          419 FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE  498 (801)
Q Consensus       419 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  498 (801)
                      .|++++|+++ .++ .+..++.|++|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4555555555 222 2555555666666666655 334445555556666666655553 22 35555555555555555


Q ss_pred             CCCCC-CccccCCCCCcEEeCCCCcCC
Q 044830          499 LEGKL-PPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       499 l~~~~-~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      ++... ...+..+++|+.|++++|++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54322 133445555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=123.53  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830          414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN  493 (801)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  493 (801)
                      +.++++|+|++|+|+. ++..+..+++|+.|++++|.++.. + .+..+++|++|++++|+++...+..+..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            4578889999999884 466667889999999999999854 3 478899999999999999876666677899999999


Q ss_pred             CCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCc---chhccCCCCCCEEEc
Q 044830          494 LNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAF---PYWTATLPRLQVLVL  542 (801)
Q Consensus       494 L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L  542 (801)
                      +++|+++.... ..+..+++|++|++++|++....   +..+..+|+|++|+-
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99999974322 46788999999999999986653   235778899998863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=7.5e-13  Score=114.83  Aligned_cols=103  Identities=28%  Similarity=0.390  Sum_probs=78.6

Q ss_pred             CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830          442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN  521 (801)
Q Consensus       442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  521 (801)
                      ++|++++|+++ .++ .+..+++|++|++++|+++ .+|..|..+++|+.|++++|++++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57888888887 344 3788888888888888887 567778888888888888888874 33 4778888888888888


Q ss_pred             cCCCCcc-hhccCCCCCCEEEccCCcCcc
Q 044830          522 KINDAFP-YWTATLPRLQVLVLRSNSFHG  549 (801)
Q Consensus       522 ~i~~~~~-~~~~~l~~L~~L~L~~N~l~~  549 (801)
                      ++.+... ..+..+++|+.|++++|++++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            8876542 456677777777777777764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=4.3e-13  Score=127.17  Aligned_cols=135  Identities=24%  Similarity=0.350  Sum_probs=102.9

Q ss_pred             CCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccC
Q 044830          430 EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLAN  509 (801)
Q Consensus       430 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  509 (801)
                      .++..+..+++|++|++++|.|+. ++ .+.++++|++|++++|.++ .+|..+..+++|++|++++|+++..  ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence            456678889999999999999984 44 4888899999999999987 4565555567899999999998743  45778


Q ss_pred             CCCCcEEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCCCCC------CCCCCCCCcEEE
Q 044830          510 CGDLEVLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNNVPS------IKRPFPELRIID  569 (801)
Q Consensus       510 l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------~~~~l~~L~~Ld  569 (801)
                      +++|+.|++++|++++... ..+..+++|+.|++++|++....+.....      .+..+|+|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8899999999999976543 56888999999999999886544332110      124577788776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-10  Score=103.59  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=40.5

Q ss_pred             CCEEECcCCCCcccCCccccCCCCCCEEeCCCC-cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830          441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN-QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG  519 (801)
Q Consensus       441 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  519 (801)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...+..|.++++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555444 23334444555555555433 2444434445555555555555555554444445555555555555


Q ss_pred             CCcCCC
Q 044830          520 NNKIND  525 (801)
Q Consensus       520 ~n~i~~  525 (801)
                      +|+++.
T Consensus        89 ~N~l~~   94 (156)
T d2ifga3          89 FNALES   94 (156)
T ss_dssp             SSCCSC
T ss_pred             CCCCcc
Confidence            555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1.8e-12  Score=122.87  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             ccceEEEccCCeeeeecc-ccccccccCceEeCcCcccccc
Q 044830          630 NIFTTIDLSNNRFEGMIP-KEVGKLSSLKLLNFSHNILRGE  669 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~  669 (801)
                      +.|+.||+++|+++.... ..++.+++|+.|+|++|.+...
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            345566666666653321 3455566666666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=104.66  Aligned_cols=106  Identities=20%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             ccEEEecCCCCCCCCccccccCCCCCEEECcCC-CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830          417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN-SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN  495 (801)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  495 (801)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++.+.+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445677777766 45667778888999999766 4877777788899999999999999998888889999999999999


Q ss_pred             CCcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830          496 DNELEGKLPPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      +|+++...+..+.. ..|+.|+|++|++.
T Consensus        89 ~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhcc-ccccccccCCCccc
Confidence            99998554445544 46889999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7e-08  Score=87.27  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=16.4

Q ss_pred             CCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830          509 NCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH  548 (801)
Q Consensus       509 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~  548 (801)
                      .+++|+.|++++|++.+..+-.......|+.|++++|++.
T Consensus        89 ~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444444444444444333222222333444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2e-07  Score=84.14  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=16.5

Q ss_pred             CCCCCCEEeCCCCCCcccc--ccCCcCCCCCCEEeCCCC
Q 044830           89 QFTKLTHLNLSFSYFSGIV--PSQISRLSKLVALDLSSD  125 (801)
Q Consensus        89 ~l~~L~~L~Ls~n~i~~~~--p~~l~~l~~L~~L~Ls~n  125 (801)
                      .+++|++|+|++|+|+...  +..+..+++|++|++++|
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC
Confidence            4455555555555554321  122334444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=7e-06  Score=74.07  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=17.5

Q ss_pred             CCCccEEECCCC-cCCCC----CCccccCCCCCcEEeCCCCcCC
Q 044830          486 CYDLVALNLNDN-ELEGK----LPPSLANCGDLEVLDVGNNKIN  524 (801)
Q Consensus       486 l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~i~  524 (801)
                      .++|++|+|+++ .++..    +...+...+.|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            455555555543 23211    1123344445555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=3.3e-05  Score=69.48  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=37.0

Q ss_pred             CCCCCEEECcCC-CCccc----CCccccCCCCCCEEeCCCCcccccCC----ccccCCCCccEEECCCCcCCCC----CC
Q 044830          438 LSTIEYLNLSNN-SLSGM----IPQCLANFDSLSLLDLRKNQFRGSIP----QIFSKCYDLVALNLNDNELEGK----LP  504 (801)
Q Consensus       438 l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~  504 (801)
                      .+.|++|+|+++ .++..    +-..+...+.|++|+|++|.+.....    ..+...+.|++|+|++|.++..    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355556666543 33321    12233444455555555555542111    1222334455555555544421    11


Q ss_pred             ccccCCCCCcEEeCCCCcC
Q 044830          505 PSLANCGDLEVLDVGNNKI  523 (801)
Q Consensus       505 ~~l~~l~~L~~L~Ls~n~i  523 (801)
                      ..+...+.|++|++++|++
T Consensus        94 ~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSS
T ss_pred             HHHHhCCcCCEEECCCCcC
Confidence            2334444555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.10  E-value=2e-05  Score=70.91  Aligned_cols=61  Identities=23%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             ccceEEEccCCeeeee----ccccccccccCceEeC--cCccccc----cCCccccCCCCCCeEeCcCCcc
Q 044830          630 NIFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNF--SHNILRG----EIPVELTSLTALSVLNLSFNQL  690 (801)
Q Consensus       630 ~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~----~ip~~l~~l~~L~~L~ls~N~l  690 (801)
                      +.++.+++++|.+...    +-..+...++|+.++|  ++|.+..    .+...+...++|+.|++++++.
T Consensus        74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4456677777666532    2344556666765433  4555543    2444555667777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.81  E-value=7.9e-05  Score=66.88  Aligned_cols=65  Identities=18%  Similarity=0.185  Sum_probs=32.4

Q ss_pred             ccCCCCccEEECCC-CcCCCC----CCccccCCCCCcEEeCCCCcCCCCcch----hccCCCCCCEEEccCCcC
Q 044830          483 FSKCYDLVALNLND-NELEGK----LPPSLANCGDLEVLDVGNNKINDAFPY----WTATLPRLQVLVLRSNSF  547 (801)
Q Consensus       483 ~~~l~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~l  547 (801)
                      ..+.+.|++|++++ +.++..    +...+...+.|++|++++|.+......    .+...++++.+++++|.+
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34556777777766 334321    223344566666666666666543222    222334444444444443