Citrus Sinensis ID: 044836

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHcHHHHEEEEccHHHHHHHHHHHcccccEEEEEEEccc
Coil and Loop (DISEMBL)
MINISQYILETTVYPREHECLKELRELTekhpqnfmfsapDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTAlaipddgkvqwmntnly
Flexible Loop (DISEMBL)
minisqyilettvypreHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTAlaipddgkvQWMNTNLY
Low Complexity Region (SEG)
MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY
Disordered region (IsUnstruct)
***ISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWM*****
Disordered Region (DISOPRED)
MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY
Disordered Region (DISEMBL)
MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY
Disordered Region (DISPRO)
MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.336	0.759	2e-31
O65922	247	Caffeoyl-CoA O-methyltran	yes	no	0.922	0.336	0.759	4e-31
O65862	247	Caffeoyl-CoA O-methyltran	no	no	0.922	0.336	0.746	4e-31
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.336	0.746	4e-31
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.345	0.759	1e-30
Q9SWB8	247	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.336	0.746	2e-30
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.344	0.746	2e-30
Q43237	242	Caffeoyl-CoA O-methyltran	yes	no	0.922	0.342	0.746	3e-30
O24149	242	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.342	0.734	6e-30
O24150	242	Caffeoyl-CoA O-methyltran	N/A	no	0.922	0.342	0.734	6e-30

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Medicago sativa (taxid: 3879)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE EC+KELRELT KHP N M ++ DE QFL+MLLKLINAKNTMEIGV+T
Sbjct: 31  QYILETSVYPREPECMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVFT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE EC+KELRE+T KHP N M ++ DE QFL+MLLKL+NAKNTMEIGVYT
Sbjct: 31  QYILETSVYPREPECMKELREVTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE EC+KELRE+T KHP N M ++ DE QFL+MLLKL+NAKNTMEIGVYT
Sbjct: 31  QYILETSVYPREPECMKELREVTAKHPWNIMTTSADEGQFLNMLLKLVNAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRE+T KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 24  QYILETSVYPREPESMKELREVTAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVYT 83

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIPDDGK+  M+ N
Sbjct: 84  GYSLLATALAIPDDGKILAMDIN 106

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9SWB8|CAMT2_EUCGL Caffeoyl-CoA O-methyltransferase 2 OS=Eucalyptus globulus GN=CCOAOMT2 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRE+T KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVYPREPESMKELREITAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALA+PDDGK+  M+ N
Sbjct: 91  GYSLLATALALPDDGKILAMDIN 113

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRE+T KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 25  QYILETSVYPREPEAMKELREVTAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVYT 84

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALA+PDDGK+  M+ N
Sbjct: 85  GYSLLATALALPDDGKILAMDIN 107

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43237|CAMT_VITVI Caffeoyl-CoA O-methyltransferase OS=Vitis vinifera PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRELT +HP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 26  QYILETSVYPREPESMKELRELTAQHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT 85

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALA+PDDGK+  M+ N
Sbjct: 86  GYSLLATALALPDDGKILAMDIN 108

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Vitis vinifera (taxid: 29760)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O24149|CAMT2_TOBAC Caffeoyl-CoA O-methyltransferase 2 OS=Nicotiana tabacum GN=CCOAOMT2 PE=2 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGV+T
Sbjct: 26  QYILETSVYPREPEPMKELREITAKHPWNLMTTSADEGQFLSMLLKLINAKNTMEIGVFT 85

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TA+A+PDDGK+  M+ N
Sbjct: 86  GYSLLATAMALPDDGKILAMDIN 108

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O24150|CAMT3_TOBAC Caffeoyl-CoA O-methyltransferase 3 OS=Nicotiana tabacum GN=CCOAOMT3 PE=2 SV=2

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGV+T
Sbjct: 26  QYILETSVYPREPEPMKELREITAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVFT 85

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TA+A+PDDGK+  M+ N
Sbjct: 86  GYSLLATAMALPDDGKILAMDIN 108

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates also free caffeic and 5-hydroxyferulic acids.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
356541791	254	PREDICTED: LOW QUALITY PROTEIN: caffeoyl	0.922	0.326	0.771	4e-30
363542053	174	caffeoyl-CoA 3-o-methyltransferase, part	0.922	0.477	0.759	4e-30
363541947	173	caffeoyl-CoA 3-o-methyltransferase, part	0.922	0.479	0.759	4e-30
289166844	168	caffeoyl CoA O-methyltransferase [Salix	0.922	0.494	0.771	5e-30
429326416	247	caffeoyl-CoA O-methyltransferase [Populu	0.922	0.336	0.771	5e-30
363807672	247	uncharacterized protein LOC100799303 [Gl	0.922	0.336	0.771	6e-30
190710715	247	caffeoyl-CoA-3-O-methyltransferase [Popu	0.922	0.336	0.771	6e-30
363541973	231	caffeoyl-CoA 3-o-methyltransferase, part	0.922	0.359	0.759	8e-30
363541945	237	caffeoyl-CoA 3-o-methyltransferase, part	0.922	0.350	0.759	8e-30
30580341	247	RecName: Full=Caffeoyl-CoA O-methyltrans	0.922	0.336	0.759	8e-30

>gi|356541791|ref|XP_003539356.1| PREDICTED: LOW QUALITY PROTEIN: caffeoyl-CoA O-methyltransferase 2-like [Glycine max]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 70/83 (84%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPREHE LKELRELTEKHP N M + PDE Q L MLLKLINAKNTMEIGV+T
Sbjct: 33  QYILETSVYPREHESLKELRELTEKHPWNLMATPPDEGQLLGMLLKLINAKNTMEIGVFT 92

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALA+P DGK+  M+ N
Sbjct: 93  GYSLLSTALALPSDGKILAMDVN 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363542053|gb|AEW26143.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 22  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 81

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 82  GYSLLATALAIPEDGKILAMDIN 104

Source: Medicago falcata

Species: Medicago falcata

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363541947|gb|AEW26090.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363541963|gb|AEW26098.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363541983|gb|AEW26108.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541993|gb|AEW26113.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542043|gb|AEW26138.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 22  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 81

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 82  GYSLLATALAIPEDGKILAMDIN 104

Source: Medicago sativa subsp. caerulea

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289166844|gb|ADC84472.1| caffeoyl CoA O-methyltransferase [Salix sachalinensis]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 72/83 (86%)

Query: 6  QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
          QYILET+VYPRE EC+KELRELT KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 10 QYILETSVYPREPECMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT 69

Query: 66 GYSLLVTALAIPDDGKVQWMNTN 88
          GYSLL TALAIP+DGK+  M+ N
Sbjct: 70 GYSLLATALAIPEDGKILAMDIN 92

Source: Salix sachalinensis

Species: Salix sachalinensis

Genus: Salix

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326416|gb|AFZ78548.1| caffeoyl-CoA O-methyltransferase [Populus tomentosa]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE EC+KELRELT KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVYPREPECMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807672|ref|NP_001242163.1| uncharacterized protein LOC100799303 [Glycine max] gi|255640450|gb|ACU20512.1| unknown [Glycine max]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 70/83 (84%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPREHE LKELRELTEKHP N M + PDE Q L MLLKLINAKNTMEIGV+T
Sbjct: 32  QYILETSVYPREHESLKELRELTEKHPWNLMATPPDEGQLLGMLLKLINAKNTMEIGVFT 91

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALA+P DGK+  M+ N
Sbjct: 92  GYSLLSTALALPSDGKILAMDVN 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190710715|gb|ACE95173.1| caffeoyl-CoA-3-O-methyltransferase [Populus tomentosa]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE EC+KELRELT KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVYPREPECMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363541973|gb|AEW26103.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 22  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 81

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 82  GYSLLATALAIPEDGKILAMDIN 104

Source: Medicago sativa subsp. x hemicycla

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363541945|gb|AEW26089.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363541949|gb|AEW26091.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363541951|gb|AEW26092.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363541953|gb|AEW26093.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363541955|gb|AEW26094.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363541957|gb|AEW26095.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363541959|gb|AEW26096.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363541961|gb|AEW26097.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541965|gb|AEW26099.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541967|gb|AEW26100.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363541977|gb|AEW26105.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541979|gb|AEW26106.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541991|gb|AEW26112.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541997|gb|AEW26115.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363541999|gb|AEW26116.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542001|gb|AEW26117.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542003|gb|AEW26118.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542005|gb|AEW26119.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542007|gb|AEW26120.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542009|gb|AEW26121.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542011|gb|AEW26122.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542013|gb|AEW26123.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363542015|gb|AEW26124.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542017|gb|AEW26125.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542021|gb|AEW26127.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542023|gb|AEW26128.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542025|gb|AEW26129.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542027|gb|AEW26130.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542033|gb|AEW26133.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542035|gb|AEW26134.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542037|gb|AEW26135.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542041|gb|AEW26137.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542045|gb|AEW26139.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542047|gb|AEW26140.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542049|gb|AEW26141.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542051|gb|AEW26142.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542055|gb|AEW26144.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542057|gb|AEW26145.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542059|gb|AEW26146.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542061|gb|AEW26147.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542063|gb|AEW26148.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542065|gb|AEW26149.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542067|gb|AEW26150.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542071|gb|AEW26152.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542073|gb|AEW26153.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363542075|gb|AEW26154.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. x hemicycla] gi|363542077|gb|AEW26155.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542079|gb|AEW26156.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata] gi|363542081|gb|AEW26157.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542083|gb|AEW26158.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542085|gb|AEW26159.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea] gi|363542087|gb|AEW26160.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 22  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 81

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 82  GYSLLATALAIPEDGKILAMDIN 104

Source: Medicago sativa subsp. x hemicycla

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30580341|sp|Q40313.1|CAMT_MEDSA RecName: Full=Caffeoyl-CoA O-methyltransferase; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|62737984|pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737985|pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737986|pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737987|pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737988|pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|62737989|pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|62737990|pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|62737991|pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|684942|gb|AAC28973.1| S-adenosyl-L-methionine:trans-caffeoyl-CoA 3-O-methyltransferase [Medicago sativa]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.955	0.332	0.686	5e-28
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.922	0.357	0.590	1.3e-22
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.855	0.305	0.623	2.1e-22
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.877	0.340	0.604	1.9e-21
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.877	0.339	0.617	2.4e-21
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.888	0.273	0.587	3.9e-21
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.833	0.280	0.493	6.2e-14
UNIPROTKB|Q86VU5	262	COMTD1 "Catechol O-methyltrans	0.833	0.286	0.441	6.3e-12
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.833	0.262	0.428	1.7e-11
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.777	0.241	0.460	1.8e-11

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query:     3 NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
             ++ QYILET+VYPRE E +KELRE+T KHP N M ++ DE QFL+ML+KL+NAKNTMEIG
Sbjct:    40 DLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLIKLVNAKNTMEIG 99

Query:    63 VYTGYSLLVTALAIPDDGKVQWMNTN 88
             VYTGYSLL TALA+P+DGK+  M+ N
Sbjct:   100 VYTGYSLLATALALPEDGKILAMDVN 125

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/83 (59%), Positives = 65/83 (78%)

Query:     6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
             +YILET+VYPRE E L+ELR +T  HPQ  M +APD  Q + MLL L+NA+ T+E+GV+T
Sbjct:    17 KYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGVFT 76

Query:    66 GYSLLVTALAIPDDGKVQWMNTN 88
             GYSLL+TAL +P+DGKV  ++ N
Sbjct:    77 GYSLLLTALTLPEDGKVIAIDMN 99

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 48/77 (62%), Positives = 63/77 (81%)

Query:     6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
             +Y+L+TTV PRE EC+++LR +T+KH   FM S+ DEAQ L MLLK+  AK T+E+GV+T
Sbjct:    33 KYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEAQLLGMLLKMAGAKRTIEVGVFT 92

Query:    66 GYSLLVTALAIPDDGKV 82
             GYSLL TALA+P+DGKV
Sbjct:    93 GYSLLATALALPEDGKV 109

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/81 (60%), Positives = 64/81 (79%)

Query:     4 ISQYILETTVYPREHECLKELRELT-EKHPQNFMFSAP-DEAQFLSMLLKLINAKNTMEI 61
             + QYI+ET+ YPREHE LKELR+ T +K+        P DE  FLSML+K++NAKNT+EI
Sbjct:    16 LKQYIMETSAYPREHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEI 75

Query:    62 GVYTGYSLLVTALAIPDDGKV 82
             GV+TGYSLL TALA+P+DG++
Sbjct:    76 GVFTGYSLLTTALALPEDGRI 96

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/81 (61%), Positives = 62/81 (76%)

Query:     4 ISQYILETTVYPREHECLKELRELTEKHPQNFM-FSAP-DEAQFLSMLLKLINAKNTMEI 61
             + QYI+ETT YPREHE LKELRE T +   N      P DE+ FLSML+K+INAKNT+EI
Sbjct:    16 LKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFLSMLVKIINAKNTIEI 75

Query:    62 GVYTGYSLLVTALAIPDDGKV 82
             GV+TGYSL   ALA+P+DG++
Sbjct:    76 GVFTGYSLFTVALALPEDGRI 96

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/80 (58%), Positives = 62/80 (77%)

Query:     3 NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
             ++ +Y+L T VYPRE+E ++ELR +T +H   FM S P+E Q LS+LL L  AKNT+E+G
Sbjct:    73 SLHEYMLNTMVYPRENEFMRELRLITSEHTYGFMSSPPEEGQLLSLLLNLTGAKNTIEVG 132

Query:    63 VYTGYSLLVTALAIPDDGKV 82
             V+TG S+L TALAIPDDGKV
Sbjct:   133 VFTGCSVLATALAIPDDGKV 152

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query:     6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
             QYIL+ ++  REH  LK+LR LT ++P   M  + D+AQ ++ L+KLI AK  +E+GV T
Sbjct:    61 QYILDHSL--REHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKAKKVIEVGVLT 118

Query:    66 GYSLLVTALAIPDDGKV 82
             GY+ L  ALA+PD+G+V
Sbjct:   119 GYNALSMALALPDNGRV 135

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q86VU5 COMTD1 "Catechol O-methyltransferase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query:     6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
             QY+L  ++  REH  L+ LR LT + PQ       ++AQ L+ L +LI AK  +++G +T
Sbjct:    56 QYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT 113

Query:    66 GYSLLVTALAIPDDGKV 82
             GYS L  ALA+P DG+V
Sbjct:   114 GYSALALALALPADGRV 130

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/77 (42%), Positives = 51/77 (66%)

Query:     6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
             QY++  ++  REH  L +LR  T +  +N M  A ++AQ ++ L KLI A  T+EIG+YT
Sbjct:    80 QYVVNNSL--REHPVLTKLRLRTMEDARNVMMVASEQAQLMANLAKLIEANKTIEIGLYT 137

Query:    66 GYSLLVTALAIPDDGKV 82
             GY+ L  AL +P++G+V
Sbjct:   138 GYNALSLALVVPENGRV 154

GO:0008171 "O-methyltransferase activity" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 35/76 (46%), Positives = 49/76 (64%)

Query:     7 YILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTG 66
             Y+L      REHE LK+LRE  E        S PD+AQ L+ML++++ AK  +E+GVYTG
Sbjct:    89 YVLNNV---REHEILKQLRE--ETAISQIQVS-PDQAQLLAMLVEILGAKRCIEVGVYTG 142

Query:    67 YSLLVTALAIPDDGKV 82
             YS L  AL +P+ G++
Sbjct:   143 YSSLAVALVLPESGRL 158

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65922	CAMT2_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.7590	0.9222	0.3360	yes	no
Q43237	CAMT_VITVI	2, ., 1, ., 1, ., 1, 0, 4	0.7469	0.9222	0.3429	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	2e-42
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	3e-36
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	2e-32
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	4e-17
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-13

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  137 bits (347), Expect = 2e-42
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+VYPRE E +KELRELT KHP N M ++ DE QFL+MLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT 90

Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALA+P+DGK+  M+ N
Sbjct: 91  GYSLLATALALPEDGKILAMDIN 113

Length = 247

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  120 bits (304), Expect = 3e-36
 Identities = 50/80 (62%), Positives = 61/80 (76%), Gaps = 2/80 (2%)

Query: 9  LETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYS 68
          LET+V   EHE LKELRE T K P + M  +P+E QFLSMLLKLI AK T+EIGV+TGYS
Sbjct: 1  LETSVR--EHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYS 58

Query: 69 LLVTALAIPDDGKVQWMNTN 88
          LL TALA+P+DGK+   + +
Sbjct: 59 LLATALALPEDGKITACDID 78

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  112 bits (281), Expect = 2e-32
 Identities = 50/81 (61%), Positives = 63/81 (77%), Gaps = 2/81 (2%)

Query: 4  ISQYILETTVYPREHECLKELRELTEKHPQNF--MFSAPDEAQFLSMLLKLINAKNTMEI 61
          + QYI+ET+ YPREHE LKELRE T +   N   M    DE  FLSML+K++NAKNT+EI
Sbjct: 16 LKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEI 75

Query: 62 GVYTGYSLLVTALAIPDDGKV 82
          GV+TGYSLL TALA+P+DG++
Sbjct: 76 GVFTGYSLLTTALALPEDGRI 96

Length = 234

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score = 72.8 bits (178), Expect = 4e-17
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 7   YILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTG 66
           Y+L      RE + L++LRE T K   + M  +PD+AQ L+ML++++ A+  +E+GVYTG
Sbjct: 74  YVLSNV---REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTG 130

Query: 67  YSLLVTALAIPDDG 80
           YS L  AL +P+ G
Sbjct: 131 YSSLAVALVLPESG 144

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 3  NISQYILETTVYPREHECL-KELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEI 61
          ++  Y+      P E   L  EL E   ++        P+    L +L +L   K  +EI
Sbjct: 11 DLYDYLEALI--PGEPPALLAELEEFAREN--GVPIIDPETGALLRLLARLSGPKRILEI 66

Query: 62 GVYTGYSLLVTALAIPDDGKV 82
          G   GYS L  ALA+PDDG++
Sbjct: 67 GTAIGYSALWMALALPDDGRL 87

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.9
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.87
COG4122	219	Predicted O-methyltransferase [General function pr	99.87
PLN02476	278	O-methyltransferase	99.86
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.86
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.85
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.07
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.07
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.04
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.99
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.99
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.98
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.88
PRK07402	196	precorrin-6B methylase; Provisional	98.75
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.68
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.68
PLN03075	296	nicotianamine synthase; Provisional	98.58
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.57
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.56
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.55
COG2890	280	HemK Methylase of polypeptide chain release factor	98.55
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.55
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.54
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.54
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.53
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.53
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.5
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.48
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.45
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.43
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.42
PRK04266	226	fibrillarin; Provisional	98.41
PRK04457	262	spermidine synthase; Provisional	98.38
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.38
TIGR00438	188	rrmJ cell division protein FtsJ.	98.37
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.37
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	98.37
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.36
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.35
PRK06202	232	hypothetical protein; Provisional	98.35
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.34
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.3
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.29
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.27
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.26
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.26
KOG2904	328	consensus Predicted methyltransferase [General fun	98.26
COG4123	248	Predicted O-methyltransferase [General function pr	98.25
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.24
PRK11207	197	tellurite resistance protein TehB; Provisional	98.24
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.23
PRK08317	241	hypothetical protein; Provisional	98.23
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.23
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.22
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.2
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.19
PRK14968	188	putative methyltransferase; Provisional	98.18
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.17
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.16
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.16
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.16
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.15
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.14
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.14
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.14
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.14
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.12
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.11
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.11
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.1
PRK05785	226	hypothetical protein; Provisional	98.1
PRK12335	287	tellurite resistance protein TehB; Provisional	98.1
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.09
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.09
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.08
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.06
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.05
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.04
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.04
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.04
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.03
PTZ00146	293	fibrillarin; Provisional	98.03
PLN02244	340	tocopherol O-methyltransferase	98.03
PRK04148	134	hypothetical protein; Provisional	98.02
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.02
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.02
PLN02672	1082	methionine S-methyltransferase	98.01
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.01
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.0
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.0
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.99
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.99
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.98
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.98
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.97
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.97
TIGR03438	301	probable methyltransferase. This model represents	97.97
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.96
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.95
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.94
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.93
PRK06922	677	hypothetical protein; Provisional	97.92
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.92
PF13679	141	Methyltransf_32: Methyltransferase domain	97.9
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.89
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.89
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.88
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.87
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.87
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.86
PRK14967	223	putative methyltransferase; Provisional	97.84
PRK00811	283	spermidine synthase; Provisional	97.84
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.84
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.82
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.82
PLN02336	475	phosphoethanolamine N-methyltransferase	97.82
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.82
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.81
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.81
PHA03412	241	putative methyltransferase; Provisional	97.8
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.79
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.79
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.78
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.76
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.74
PRK01581	374	speE spermidine synthase; Validated	97.73
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.72
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.7
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.68
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.68
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.67
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.67
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.67
PHA03411	279	putative methyltransferase; Provisional	97.66
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.66
PLN02490	340	MPBQ/MSBQ methyltransferase	97.65
PLN02366	308	spermidine synthase	97.63
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.58
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.53
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.53
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.51
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.51
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.5
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.49
PLN02336	475	phosphoethanolamine N-methyltransferase	97.48
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.45
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.44
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.43
KOG2899	288	consensus Predicted methyltransferase [General fun	97.41
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.41
PRK03612	521	spermidine synthase; Provisional	97.4
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.31
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.31
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.28
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.25
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.24
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.24
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.2
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.18
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.18
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.12
PLN02823	336	spermine synthase	97.11
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.1
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	97.03
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.99
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.97
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.96
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.91
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.89
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.82
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.79
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.77
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	96.68
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.67
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.66
PHA01634	156	hypothetical protein	96.51
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.49
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	96.43
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.31
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.09
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.05
COG2521	287	Predicted archaeal methyltransferase [General func	96.04
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.97
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.92
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.91
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.9
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.87
KOG3010	261	consensus Methyltransferase [General function pred	95.87
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.76
KOG2361	264	consensus Predicted methyltransferase [General fun	95.75
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	95.74
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.73
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.65
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	95.57
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	95.33
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	95.22
COG3897	218	Predicted methyltransferase [General function pred	95.1
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	95.08
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	95.07
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.02
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.99
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	94.85
COG1565	370	Uncharacterized conserved protein [Function unknow	94.59
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.54
COG4076	252	Predicted RNA methylase [General function predicti	94.44
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.4
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.18
KOG4300	252	consensus Predicted methyltransferase [General fun	93.75
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	93.67
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	93.65
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	93.45
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	93.22
KOG3115	249	consensus Methyltransferase-like protein [General	93.13
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	92.98
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	92.81
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	92.76
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	92.67
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	92.58
PRK00536	262	speE spermidine synthase; Provisional	92.58
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	92.55
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.53
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	92.42
COG2520	341	Predicted methyltransferase [General function pred	92.31
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	92.16
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	92.12
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	92.01
KOG1271	227	consensus Methyltransferases [General function pre	91.96
KOG2730	263	consensus Methylase [General function prediction o	91.71
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.43
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	91.34
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	91.25
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	90.65
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	90.49
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	90.17
COG2265	432	TrmA SAM-dependent methyltransferases related to t	90.13
PRK10742	250	putative methyltransferase; Provisional	89.42
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	89.33
COG2384	226	Predicted SAM-dependent methyltransferase [General	88.38
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	88.24
COG1041	347	Predicted DNA modification methylase [DNA replicat	87.54
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	86.81
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.64
COG1255	129	Uncharacterized protein conserved in archaea [Func	86.55
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	85.56
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	85.42
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	85.12
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	84.84
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	84.59
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	84.46
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	84.32
KOG2811	420	consensus Uncharacterized conserved protein [Funct	83.71
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	83.56
KOG3201	201	consensus Uncharacterized conserved protein [Funct	83.44
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	83.36
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	82.85
KOG2920	282	consensus Predicted methyltransferase [General fun	82.53
PLN02668	386	indole-3-acetate carboxyl methyltransferase	82.2
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	82.18
PF04189	299	Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 i	82.08
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	81.78
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	81.44
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	81.18
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	80.98

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.90  E-value=3.3e-23  Score=146.35  Aligned_cols=88  Identities=70%  Similarity=1.017  Sum_probs=82.8

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++++|+.+++..+++++.++++++.+.++++|.|.++|++|+||.++++..+|++||||||++||||+|||++++++|+
T Consensus        27 ~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~  106 (247)
T PLN02589         27 DALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGK  106 (247)
T ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCE
Confidence            47899998876657889999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+|+|.++
T Consensus       107 v~tiE~~~  114 (247)
T PLN02589        107 ILAMDINR  114 (247)
T ss_pred             EEEEeCCH
Confidence            99999986

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.87  E-value=3.8e-22  Score=137.62  Aligned_cols=78  Identities=44%  Similarity=0.658  Sum_probs=71.5

Q ss_pred             hhcCCCCChHHHHHHHHHHHhC-CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           10 ETTVYPREHECLKELRELTEKH-PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        10 ~~~~~~~~~~~l~~l~~~a~~~-~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +|++  .+++.++++++++.++ ++|.|.++|++|+||.++++..+|++||||||++||||+|||+++|++|+|+|+|+|
T Consensus         2 ~~s~--~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~   79 (205)
T PF01596_consen    2 EHSV--REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID   79 (205)
T ss_dssp             HTCT--CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS
T ss_pred             CCCc--CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc
Confidence            4564  6899999999999865 488899999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 044836           89 L   89 (90)
Q Consensus        89 ~   89 (90)
                      +
T Consensus        80 ~   80 (205)
T PF01596_consen   80 P   80 (205)
T ss_dssp             H
T ss_pred             H
Confidence            6

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.87  E-value=1.5e-21  Score=135.89  Aligned_cols=85  Identities=28%  Similarity=0.457  Sum_probs=77.3

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+.+|++++.. +.++..++++++++++++.|++.  |++|+||.++++..+|++||||||++||||+|||.++|++|+
T Consensus        10 ~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~~--~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~   86 (219)
T COG4122          10 EDLYDYLEALIP-GEPPALLAELEEFARENGVPIID--PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGR   86 (219)
T ss_pred             HHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCCC--hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCe
Confidence            468899998773 23778889999999999999655  999999999999999999999999999999999999999999


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |||||+|+
T Consensus        87 l~tiE~~~   94 (219)
T COG4122          87 LTTIERDE   94 (219)
T ss_pred             EEEEeCCH
Confidence            99999986

>PLN02476 O-methyltransferase

Probab=99.86  E-value=4.1e-21  Score=137.67  Aligned_cols=85  Identities=38%  Similarity=0.624  Sum_probs=79.3

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+++|+.++.   ++++.++++++++.+++.+.|.++|++++||.++++..+|++||||||++||||+|+|++++++|+
T Consensus        69 ~~i~~Y~~~~~---~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~  145 (278)
T PLN02476         69 PRLYDYVLSNV---REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGC  145 (278)
T ss_pred             HHHHHHHHhcC---CCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCE
Confidence            57899999753   588999999999999878888999999999999999999999999999999999999999998999


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+|+|.++
T Consensus       146 V~TiE~d~  153 (278)
T PLN02476        146 LVACERDS  153 (278)
T ss_pred             EEEEECCH
Confidence            99999986

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=3.5e-21  Score=134.36  Aligned_cols=88  Identities=55%  Similarity=0.841  Sum_probs=81.3

Q ss_pred             hHHHHHHhhcCCCCChHHHHHHHHHHHhCC--CccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC
Q 044836            3 NISQYILETTVYPREHECLKELRELTEKHP--QNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG   80 (90)
Q Consensus         3 ~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~--~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~   80 (90)
                      ..++|+.+++..+++++.++++++.|..++  ...|.++|++++|+.+++++.+|+++||||++||||++.+|.++|++|
T Consensus        20 ~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dG   99 (237)
T KOG1663|consen   20 RLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDG   99 (237)
T ss_pred             hhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCc
Confidence            467888888777899999999999998774  557999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCC
Q 044836           81 KVQWMNTNLY   90 (90)
Q Consensus        81 ~v~~ie~~~~   90 (90)
                      +|+|+|+|++
T Consensus       100 rv~a~eid~~  109 (237)
T KOG1663|consen  100 RVVAIEIDAD  109 (237)
T ss_pred             eEEEEecChH
Confidence            9999999874

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.85  E-value=9e-21  Score=132.57  Aligned_cols=88  Identities=56%  Similarity=0.845  Sum_probs=80.1

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhC--CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCC
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKH--PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDD   79 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~--~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~   79 (90)
                      +.+++|+.+++.++++++.++++++++.++  +.|.|.+++++++||.++++..++++|||||||+|||++|+|++++++
T Consensus        14 ~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~   93 (234)
T PLN02781         14 EALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPED   93 (234)
T ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCC
Confidence            468999988764467899999999999876  457888999999999999999999999999999999999999999988


Q ss_pred             CEEEEEecCC
Q 044836           80 GKVQWMNTNL   89 (90)
Q Consensus        80 ~~v~~ie~~~   89 (90)
                      |+|+++|+++
T Consensus        94 g~v~tiD~d~  103 (234)
T PLN02781         94 GRITAIDIDK  103 (234)
T ss_pred             CEEEEEECCH
Confidence            9999999986

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.4e-10  Score=80.40  Aligned_cols=72  Identities=26%  Similarity=0.301  Sum_probs=54.9

Q ss_pred             CCChHHHHHHHHHHHh-CCCc----cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           15 PREHECLKELRELTEK-HPQN----FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        15 ~~~~~~l~~l~~~a~~-~~~p----~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |++.++.+.++..|+. ..+|    .-.+.|.....+..++...+..+|||||||+||.|..||+..   ++|+++|+++
T Consensus        28 PRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~  104 (209)
T COG2518          28 PRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIE  104 (209)
T ss_pred             CHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcH
Confidence            5666666666666653 3333    234567777777777899999999999999999999999985   4999999864

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.07  E-value=2.2e-10  Score=78.86  Aligned_cols=53  Identities=28%  Similarity=0.327  Sum_probs=45.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|.....+...+...++.+|||||||+||.+..+++.++.+++|+++|+++
T Consensus        59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~  111 (212)
T PRK13942         59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP  111 (212)
T ss_pred             eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH
Confidence            35666666666667788899999999999999999999988789999999985

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.04  E-value=1.1e-09  Score=75.86  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             HHHHHHhhcCCCCChHHHHHHHHHHHhCCC--------------c----cccCCHHHHHHHHHHHHhcCCCeEEEEcccc
Q 044836            4 ISQYILETTVYPREHECLKELRELTEKHPQ--------------N----FMFSAPDEAQFLSMLLKLINAKNTMEIGVYT   65 (90)
Q Consensus         4 ~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~--------------p----~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~   65 (90)
                      +.+.+.++.. -..+.+++.++..-++.-+              |    ...+.|..-..+-.++.+.+..+|||||||+
T Consensus         5 lv~~l~~~g~-v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGs   83 (209)
T PF01135_consen    5 LVDNLIRPGD-VTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTGS   83 (209)
T ss_dssp             HHHHHHHTTS-S-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-TT
T ss_pred             HHHHHHHcCC-CCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            4444444442 2456677777655443221              1    2235565555555556788999999999999


Q ss_pred             cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           66 GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        66 G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ||.|..+|..+++.++|+++|+++
T Consensus        84 GY~aAlla~lvg~~g~Vv~vE~~~  107 (209)
T PF01135_consen   84 GYQAALLAHLVGPVGRVVSVERDP  107 (209)
T ss_dssp             SHHHHHHHHHHSTTEEEEEEESBH
T ss_pred             cHHHHHHHHhcCccceEEEECccH
Confidence            999999999998889999999875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.99  E-value=1.5e-09  Score=74.62  Aligned_cols=52  Identities=31%  Similarity=0.381  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.|...+.+..++...+..+|||||||+|+.++.+++..+.+++|+++|+++
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~  112 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP  112 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH
Confidence            3455544555556777889999999999999999999988789999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.99  E-value=2.4e-10  Score=78.13  Aligned_cols=69  Identities=19%  Similarity=0.134  Sum_probs=58.9

Q ss_pred             CChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           16 REHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        16 ~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +....+.++++.+...++|  .+++.+..++..+..  ++.+|||||||+|..+..+++..| +++|+++|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~   74 (202)
T PRK00121          6 RRRGRLTKGQQRAIEELWP--RLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE   74 (202)
T ss_pred             hhccccccchhhhhcccch--hhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech
Confidence            3455678888999989999  456778888888777  788999999999999999999877 68999999986

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.98  E-value=7.9e-10  Score=75.66  Aligned_cols=50  Identities=26%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |.....+..++...+..+|||||||+|+.+..+++.+++.++|+++|+++
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~  107 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK  107 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH
Confidence            43333333334455667999999999999999999988778999999985

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.88  E-value=1.3e-08  Score=69.56  Aligned_cols=82  Identities=17%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             hHHHHHHhhcCCCCChHHHHHHHHHHHhCC--------------Cc----cccCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 044836            3 NISQYILETTVYPREHECLKELRELTEKHP--------------QN----FMFSAPDEAQFLSMLLKLINAKNTMEIGVY   64 (90)
Q Consensus         3 ~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~--------------~p----~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~   64 (90)
                      ++.+++.....  ..+.+++.++...++.-              +|    ...+.|.....+..+++..+..+|||||||
T Consensus        11 ~~v~~l~~~~~--~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~G   88 (212)
T PRK00312         11 RLVLRLRAEGI--LDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTG   88 (212)
T ss_pred             HHHHHHHHcCC--CCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            34455554442  45566666655444322              22    124567777777777777888999999999


Q ss_pred             ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           65 TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        65 ~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +|+.+..+++..   ++++++|+++
T Consensus        89 sG~~t~~la~~~---~~v~~vd~~~  110 (212)
T PRK00312         89 SGYQAAVLAHLV---RRVFSVERIK  110 (212)
T ss_pred             ccHHHHHHHHHh---CEEEEEeCCH
Confidence            999999988864   4899999874

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.75  E-value=2.8e-08  Score=67.21  Aligned_cols=57  Identities=19%  Similarity=0.177  Sum_probs=45.2

Q ss_pred             hCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           30 KHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        30 ~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.|  ...++...++...+...+..+|||+|||+|+.++++++..+ +++|+++|+++
T Consensus        18 ~~~~p--~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~   74 (196)
T PRK07402         18 LPGIP--LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDE   74 (196)
T ss_pred             CCCCC--CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCH
Confidence            35666  34466666666666767788999999999999999998766 68999999985

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.68  E-value=7.2e-08  Score=64.70  Aligned_cols=50  Identities=24%  Similarity=0.272  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+....++...+...++.+|||||||+|+.++.+++..+ +++|+++|+++
T Consensus        16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~   65 (187)
T PRK08287         16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNP   65 (187)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCH
Confidence            344444444445666889999999999999999999876 78999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.68  E-value=2.9e-08  Score=60.79  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+|||||||+|..++++++..+ +++|+++|+++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~   35 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISP   35 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSH
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCH
Confidence            467999999999999999999656 89999999986

...

>PLN03075 nicotianamine synthase; Provisional

Probab=98.58  E-value=1.2e-07  Score=68.82  Aligned_cols=51  Identities=12%  Similarity=-0.032  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++-++++|..+... +|++|+||||| .|++++++++...++++++++|+|+
T Consensus       108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~  159 (296)
T PLN03075        108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP  159 (296)
T ss_pred             HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence            346778888887776 99999999999 7799999998776699999999986

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.57  E-value=1.7e-07  Score=64.37  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+..++.+|||||||+|+.+..+++.++ +++++++|+++
T Consensus        37 ~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~   77 (204)
T TIGR03587        37 ALNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINE   77 (204)
T ss_pred             HHHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCH
Confidence            334456778999999999999999999877 78999999986

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.56  E-value=4.4e-07  Score=61.32  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=33.0

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++++|||||||+|+.++.++...+ +++|+++|.++
T Consensus        39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~   76 (181)
T TIGR00138        39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNH   76 (181)
T ss_pred             HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcH
Confidence            345689999999999999999997665 78999999985

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.55  E-value=2.2e-07  Score=61.84  Aligned_cols=44  Identities=25%  Similarity=0.229  Sum_probs=37.4

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +|...+...+.++|||+|||+|+.++++++..+ +.+|+++|+|+
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~   65 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINP   65 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBH
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCH
Confidence            454445555899999999999999999999887 77899999985

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.4e-07  Score=67.84  Aligned_cols=53  Identities=21%  Similarity=0.336  Sum_probs=42.7

Q ss_pred             ccCCHHHHHHHHHHH-HhcC-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLL-KLIN-AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~-~~~~-~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.|++..++..+. .... +++|||||||||+.++.+|+..+ +.+|+++|+|+
T Consensus        90 liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~  144 (280)
T COG2890          90 LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISP  144 (280)
T ss_pred             eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCH
Confidence            356778888888744 2222 22799999999999999999998 79999999986

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=8.1e-08  Score=68.37  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=44.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++|.+.++. .+.+.++.+|||.|||+|..|++||.++++.|+|++.|+.+
T Consensus        78 IyPKD~~~I~~-~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~  129 (256)
T COG2519          78 IYPKDAGYIVA-RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE  129 (256)
T ss_pred             ecCCCHHHHHH-HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH
Confidence            44567665554 48999999999999999999999999999899999999864

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.54  E-value=1.8e-07  Score=63.75  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|+.++++++..+ +++|+++|+++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~   79 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLG   79 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcH
Confidence            478999999999999999999777 79999999985

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.54  E-value=1.1e-07  Score=67.52  Aligned_cols=53  Identities=19%  Similarity=0.190  Sum_probs=39.0

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..++|.+ ++-+.+.+.++.+|||.|||+|..|.+|++++.+.|+|++.|..+
T Consensus        23 IiYpkD~~-~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~   75 (247)
T PF08704_consen   23 IIYPKDIS-YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE   75 (247)
T ss_dssp             ---HHHHH-HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             eeeCchHH-HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH
Confidence            34556655 555558999999999999999999999999999899999999863

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.53  E-value=7.4e-07  Score=68.61  Aligned_cols=54  Identities=15%  Similarity=0.287  Sum_probs=43.9

Q ss_pred             cccCCHHHHHHHHHHHHhc---------------------------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           35 FMFSAPDEAQFLSMLLKLI---------------------------NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~~~---------------------------~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ++++.|++..++...+...                           ++.+|||||||+|+.++.+++..+ +++|+++|+
T Consensus        92 VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDi  170 (506)
T PRK01544         92 VLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELP-NANVIATDI  170 (506)
T ss_pred             cccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCC-CCeEEEEEC
Confidence            4567788888887655321                           346899999999999999999887 789999999


Q ss_pred             CC
Q 044836           88 NL   89 (90)
Q Consensus        88 ~~   89 (90)
                      |+
T Consensus       171 s~  172 (506)
T PRK01544        171 SL  172 (506)
T ss_pred             CH
Confidence            85

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.53  E-value=2.9e-07  Score=56.80  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++|||||||+|..+..+++..+ +++|+++|+++
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~   53 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNP   53 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCH
Confidence            344567999999999999999999988 58999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.50  E-value=3.4e-07  Score=67.09  Aligned_cols=40  Identities=25%  Similarity=0.294  Sum_probs=34.8

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+..+|||||||+|+.++.+++..+..++|+++|+++
T Consensus        76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~  115 (322)
T PRK13943         76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR  115 (322)
T ss_pred             cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH
Confidence            3456778999999999999999999887668999999875

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.48  E-value=2.8e-07  Score=59.86  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|||+|..+..++..+.++++++++|+++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~   38 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE   38 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH
Confidence            4678999999999999999997666689999999986

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.45  E-value=5.6e-07  Score=61.79  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=35.7

Q ss_pred             HHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           49 LLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        49 l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...++++|||||||+|..+..+++..+++++|+++|+++
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~   80 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE   80 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence            34555678999999999999999999987788999999975

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.43  E-value=7.9e-07  Score=60.34  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=34.9

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+..+|||+|||+|..++.+++.++..++|+++|+++
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~   75 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE   75 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            3456778999999999999999999887678999999975

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.42  E-value=6.6e-07  Score=64.23  Aligned_cols=52  Identities=13%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             cCCHHHHHHHHHHHH-h---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLK-L---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~-~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.|++..++...+. .   .++.+|||+|||+|..++.+++..+ +++|+++|+|+
T Consensus       100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~  155 (284)
T TIGR03533       100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISP  155 (284)
T ss_pred             cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCH
Confidence            456677777776554 2   3467999999999999999999887 78999999985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK04266 fibrillarin; Provisional

Probab=98.41  E-value=5.1e-07  Score=63.15  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             HHHHHHHH--HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSML--LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l--~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+|..+  +...+..+|||+|||+|+.++.+++.++ .|+|+++|+++
T Consensus        58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~  106 (226)
T PRK04266         58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAP  106 (226)
T ss_pred             HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCH
Confidence            34455544  5556788999999999999999999997 89999999985

>PRK04457 spermidine synthase; Provisional

Probab=98.38  E-value=1.1e-06  Score=62.48  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+....++++|||||||+|..+.++++..| +.+|+++|+|+
T Consensus        55 ~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp  100 (262)
T PRK04457         55 RAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP  100 (262)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH
Confidence            33444444456789999999999999999999987 78999999986

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.38  E-value=6.3e-07  Score=62.62  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++++|||||||+|..+..+++..+ +++|+++|+++
T Consensus        27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~   65 (258)
T PRK01683         27 VPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSP   65 (258)
T ss_pred             CCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCH
Confidence            3446788999999999999999999887 78999999975

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.37  E-value=8.3e-07  Score=59.65  Aligned_cols=40  Identities=13%  Similarity=0.143  Sum_probs=34.8

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+.++|||||||+|..+..+++.....++|+++|+++
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~   67 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP   67 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence            3346788999999999999999998886678999999986

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.37  E-value=6.8e-07  Score=60.73  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++.+|||+|||+|..++++|+.   +.+|+++|+++
T Consensus        24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~   62 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNP   62 (195)
T ss_pred             HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCH
Confidence            3356667899999999999999999984   57999999975

Part of a tellurite-reducing operon tehA and tehB

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=98.37  E-value=9.8e-07  Score=61.27  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhh---CCCCCEEEEEecC
Q 044836           31 HPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALA---IPDDGKVQWMNTN   88 (90)
Q Consensus        31 ~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~---~~~~~~v~~ie~~   88 (90)
                      .|.|++.. |..-..++.++...+|+.|+|+|++-|.|++++|+-   ++..++|++||++
T Consensus        10 ~G~pi~q~-P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId   69 (206)
T PF04989_consen   10 LGRPIIQY-PQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID   69 (206)
T ss_dssp             TTEEESS--HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred             CCeehhcC-HHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence            56776654 445568899999999999999999999999999864   4357999999995

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.36  E-value=1.1e-06  Score=60.62  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=34.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||||||+|..+..+++..++.++|+++|+++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            35677999999999999999999987778999999875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.35  E-value=1e-06  Score=58.72  Aligned_cols=46  Identities=20%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++ .+|...+...++++|||+|||+|+.+..+++..   .+|+++|+++
T Consensus         6 ~d~-~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~   51 (179)
T TIGR00537         6 EDS-LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINP   51 (179)
T ss_pred             ccH-HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCH
Confidence            444 566666777888999999999999999999863   3899999985

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK06202 hypothetical protein; Provisional

Probab=98.35  E-value=1.1e-06  Score=60.72  Aligned_cols=47  Identities=15%  Similarity=0.042  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~~   89 (90)
                      .+++...+...++.+|||||||+|..+..+++..++   +.+|+++|+++
T Consensus        49 ~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~   98 (232)
T PRK06202         49 RRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP   98 (232)
T ss_pred             HHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            344444444567889999999999999999876532   46999999985

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.34  E-value=1.1e-06  Score=62.37  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=34.8

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++.+|||||||+|..+..+++..+++++|+++|+++
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~  108 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS  108 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            4456778999999999999999999876678999999985

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.30  E-value=1.1e-06  Score=61.59  Aligned_cols=39  Identities=13%  Similarity=0.174  Sum_probs=34.2

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++.+|||||||+|..+..+++..| +++|+++|+++
T Consensus        25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~   63 (255)
T PRK14103         25 VGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSP   63 (255)
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCH
Confidence            3446788999999999999999999886 78999999975

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.29  E-value=2e-06  Score=61.50  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=41.3

Q ss_pred             cCCHHHHHHHHHHHHh---cCC-CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL---INA-KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~---~~~-~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|++..++......   .++ .+|||+|||+|+.++.++...+ +.+|+++|+++
T Consensus        93 iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~  148 (284)
T TIGR00536        93 IPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISP  148 (284)
T ss_pred             CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCH
Confidence            3566777777765432   233 6999999999999999999887 78999999985

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.27  E-value=1.4e-06  Score=61.20  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             HHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           47 SMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        47 ~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+....++.+|||+|||||-.+..+++.++++++|+++|+++
T Consensus        40 ~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~   82 (233)
T PF01209_consen   40 IKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP   82 (233)
T ss_dssp             HHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H
T ss_pred             HhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH
Confidence            3335567888999999999999999999998889999999875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.26  E-value=1.2e-05  Score=61.04  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=42.7

Q ss_pred             cCCHHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...|++..++..+... .+..+|||||||+|..++.+++..+ +.+++++|+|+
T Consensus       233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~  285 (423)
T PRK14966        233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISP  285 (423)
T ss_pred             CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCH
Confidence            4566777777776543 4567999999999999999998877 78999999985

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.26  E-value=4.1e-06  Score=60.88  Aligned_cols=47  Identities=19%  Similarity=0.241  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.--|..+-+. .+.++|||+|||||..++..++ ++ ..+|+++|+||
T Consensus       147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lG-A~~v~a~DiDp  194 (295)
T PF06325_consen  147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK-LG-AKKVVAIDIDP  194 (295)
T ss_dssp             HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TT-BSEEEEEESSC
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEecCCH
Confidence            445555566555 4578999999999999998887 45 57899999997

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=2.4e-06  Score=61.98  Aligned_cols=54  Identities=11%  Similarity=0.326  Sum_probs=46.1

Q ss_pred             cccCCHHHHHHHHHHHHhc------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           35 FMFSAPDEAQFLSMLLKLI------NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~~~------~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++++.|++..++.+.+...      ++..+||+|||+|..++.+++.+| .++++++|.++
T Consensus       123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~  182 (328)
T KOG2904|consen  123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSK  182 (328)
T ss_pred             eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccH
Confidence            3567889999988877543      455799999999999999999999 89999999874

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.25  E-value=1.5e-06  Score=61.85  Aligned_cols=53  Identities=15%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++-| +-||..+++....++|||||||+|..++.+|+..+ +.+|++||+++
T Consensus        26 ~~~~~~D-aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~   78 (248)
T COG4123          26 GFRYGTD-AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQE   78 (248)
T ss_pred             ccccccH-HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCH
Confidence            4455555 66999999999999999999999999999999987 49999999875

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.24  E-value=2.9e-06  Score=58.56  Aligned_cols=51  Identities=20%  Similarity=0.342  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+++..++..+....  ++.+|||+|||+|..++.+++..+ +.+++++|+++
T Consensus        69 p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~  121 (251)
T TIGR03534        69 PRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISP  121 (251)
T ss_pred             CCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCH
Confidence            4456666666665543  456999999999999999999887 67999999875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.24  E-value=1.9e-06  Score=58.66  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||+|||+|..+++||+.   +.+|+++|+++
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~   62 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNP   62 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCH
Confidence            4557899999999999999999985   57999999975

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.23  E-value=2.8e-06  Score=60.53  Aligned_cols=49  Identities=14%  Similarity=-0.043  Sum_probs=38.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.....+...+...++.+|||||||+|..|..+++..   .+|+++|+|+
T Consensus        26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~   74 (272)
T PRK00274         26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDR   74 (272)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCH
Confidence            455544444444556678899999999999999999984   4899999986

>PRK08317 hypothetical protein; Provisional

Probab=98.23  E-value=3.7e-06  Score=56.97  Aligned_cols=44  Identities=16%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             HHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.......++.+|||+|||+|..+..++...++.++++++|+++
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~   54 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE   54 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH
Confidence            33445667788999999999999999999885578999999875

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.23  E-value=2.3e-06  Score=60.01  Aligned_cols=52  Identities=19%  Similarity=0.329  Sum_probs=41.6

Q ss_pred             cCCHHHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|++..++..+..   ..++.+|||+|||+|..++.++...+ ..+++++|+++
T Consensus        88 ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~  142 (275)
T PRK09328         88 IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISP  142 (275)
T ss_pred             eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCH
Confidence            345566666666552   34677999999999999999999987 78999999875

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.22  E-value=3.2e-06  Score=61.42  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=41.0

Q ss_pred             cCCHHHHHHHHHHHH-h-c-C-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLK-L-I-N-AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~-~-~-~-~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.|++..++...+. . . + +++|||+|||+|+.++.+++..| +.+|+++|+|+
T Consensus       112 ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~  167 (307)
T PRK11805        112 VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISP  167 (307)
T ss_pred             CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCH
Confidence            356677777776543 2 2 2 37999999999999999999887 78999999985

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.20  E-value=3.9e-06  Score=59.31  Aligned_cols=50  Identities=14%  Similarity=-0.004  Sum_probs=40.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++.....+...+...+.++|||||||+|..|..+++.   ..+|+++|+|+
T Consensus        12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~   61 (258)
T PRK14896         12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDP   61 (258)
T ss_pred             cCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCH
Confidence            356666666665566677889999999999999999987   46899999985

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.19  E-value=5.9e-06  Score=57.91  Aligned_cols=37  Identities=16%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIP-DDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~-~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+++.+. ++++++++|+++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~   92 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP   92 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH
Confidence            4677999999999999999998652 478999999975

>PRK14968 putative methyltransferase; Provisional

Probab=98.18  E-value=5.1e-06  Score=54.86  Aligned_cols=44  Identities=20%  Similarity=0.173  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++...+...+.++|||+|||+|+.+..+++.   +.+++++|+++
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~   55 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP   55 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH
Confidence            344444455578889999999999999999986   58999999875

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.17  E-value=3.8e-06  Score=59.44  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=34.3

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||||-.|+.+++..+ .|+|+++|+|+
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~   85 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISE   85 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCH
Confidence            34789999999999999999999999 99999999985

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=3.6e-06  Score=61.37  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||+|||+|..+++.++ ++ ..+++++|+||
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~k-LG-A~~v~g~DiDp  195 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAK-LG-AKKVVGVDIDP  195 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHH-cC-CceEEEecCCH
Confidence            4899999999999999998887 45 57899999986

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.16  E-value=7.6e-06  Score=56.06  Aligned_cols=55  Identities=18%  Similarity=0.125  Sum_probs=41.7

Q ss_pred             CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           32 PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        32 ~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.| | .-++.-.+.-..++..+..+++|||||||-.++-+|. ..+.+++++||.++
T Consensus        14 ~~p-~-TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~   68 (187)
T COG2242          14 GGP-M-TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDE   68 (187)
T ss_pred             CCC-C-cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCH
Confidence            456 2 2344444444556678899999999999999999994 45599999999875

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.16  E-value=2.7e-06  Score=57.66  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+|+..| ++.++++|+++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~   50 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHT   50 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeH
Confidence            4667999999999999999999987 78999999874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.15  E-value=3.7e-06  Score=62.91  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+|||+|||+|..++++++..| +.+|+++|+|+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~  262 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESP  262 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCH
Confidence            46999999999999999999987 78999999985

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.14  E-value=5.3e-06  Score=58.54  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=36.2

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +-..++.+|.|+|||+|-||-.|++..| ++.|++||.|+
T Consensus        26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~   64 (257)
T COG4106          26 VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSP   64 (257)
T ss_pred             CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCH
Confidence            5667899999999999999999999999 89999999875

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.14  E-value=5.5e-06  Score=56.27  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..+ ..+++++|+++
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~   68 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISA   68 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChH
Confidence            4567999999999999999999887 78899999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.14  E-value=7.1e-06  Score=57.66  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+..+.+ ..++++|||||||+|+.++.+++. + ..+|+++|+|+
T Consensus       105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~  152 (250)
T PRK00517        105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDP  152 (250)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCH
Confidence            34445555544 357889999999999999987763 4 35799999986

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.14  E-value=3.9e-06  Score=63.42  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .....++..++...+.++|||+|||+|..++++++.++++++|+++|+++
T Consensus       236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~  285 (444)
T PRK14902        236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE  285 (444)
T ss_pred             ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH
Confidence            34455666666677788999999999999999999986679999999975

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.12  E-value=6.7e-06  Score=62.22  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++..++...++.+|||+|||+|..|+++++.+++.++|+++|+++
T Consensus       224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~  272 (431)
T PRK14903        224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR  272 (431)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH
Confidence            4455666666777888999999999999999999998789999999975

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.11  E-value=5e-06  Score=62.91  Aligned_cols=47  Identities=11%  Similarity=0.153  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++...+.++|||+|||+|..|+++++.++..++|+++|+++
T Consensus       239 s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~  285 (445)
T PRK14904        239 QALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP  285 (445)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH
Confidence            33444445556778999999999999999999988778999999985

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.11  E-value=6.8e-06  Score=56.26  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=30.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++|||||||+|..+.+++..   +.+|+++|+++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~   87 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISE   87 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCH
Confidence            456889999999999999999874   56999999985

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.10  E-value=6e-06  Score=57.92  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=30.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+.++++.   +.+|+++|+++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~   76 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSA   76 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCH
Confidence            45789999999999999999985   57999999985

>PRK05785 hypothetical protein; Provisional

Probab=98.10  E-value=8e-06  Score=56.82  Aligned_cols=43  Identities=12%  Similarity=0.045  Sum_probs=34.0

Q ss_pred             HHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+... .++.+|||||||||..+..+++..  +++|+++|+++
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~   84 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAE   84 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCH
Confidence            44444432 357899999999999999999876  47999999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.10  E-value=6.2e-06  Score=59.02  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||||||+|..++++++.   +.+|+++|+++
T Consensus       117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~  152 (287)
T PRK12335        117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQ  152 (287)
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCH
Confidence            4467789999999999999999984   57999999975

>TIGR00740 methyltransferase, putative

Probab=98.09  E-value=1.4e-05  Score=55.44  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIP-DDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~-~~~~v~~ie~~~   89 (90)
                      +..+|||||||+|..+..+++.++ ++++++++|+++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~   89 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ   89 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH
Confidence            567999999999999999999864 378999999975

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.09  E-value=1.1e-05  Score=57.02  Aligned_cols=50  Identities=8%  Similarity=-0.019  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++..++.......    ++.+|||+|||+|..++.+++..+ +.+|+++|+|+
T Consensus        67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~  120 (251)
T TIGR03704        67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDP  120 (251)
T ss_pred             CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCH
Confidence            445555555544432    245899999999999999999877 67999999985

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.08  E-value=1.2e-05  Score=54.82  Aligned_cols=42  Identities=19%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             HHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+..  ..++.+|||||||+|..+..+++.   ..+++++|+++
T Consensus        52 ~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~   95 (230)
T PRK07580         52 VLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISP   95 (230)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCH
Confidence            4444433  356789999999999999999975   45799999874

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.06  E-value=1e-05  Score=57.38  Aligned_cols=47  Identities=6%  Similarity=0.075  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++...++.+|||+|||+|.-|+.+|+.+++.|+|+++|+++
T Consensus        60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~  106 (264)
T TIGR00446        60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK  106 (264)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH
Confidence            33444455566778999999999999999999998778999999985

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.05  E-value=5.4e-06  Score=58.46  Aligned_cols=40  Identities=18%  Similarity=0.303  Sum_probs=35.0

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+.++|||||||+|..++.+++..+..++|+++|+++
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~  112 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP  112 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH
Confidence            4456788999999999999999998887778999999875

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.04  E-value=1.1e-05  Score=56.28  Aligned_cols=36  Identities=8%  Similarity=0.031  Sum_probs=29.9

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~   74 (251)
T PRK10258         39 PQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSP   74 (251)
T ss_pred             CccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCH
Confidence            3345789999999999999888763   57999999975

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.04  E-value=1.6e-05  Score=50.84  Aligned_cols=44  Identities=30%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             HHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+.. ..+.++|||||||+|..+..++..   ..+++++|+++
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~   54 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISP   54 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSH
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCH
Confidence            445565554 678899999999999999999664   35999999974

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.04  E-value=1.5e-05  Score=57.14  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+..+.+. .++++|||+|||+|+.++.+++ .+ ..+|+++|+++
T Consensus       145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~  192 (288)
T TIGR00406       145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDP  192 (288)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCH
Confidence            333334444333 4678999999999999988886 44 56999999985

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.03  E-value=1.1e-05  Score=53.49  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||||||+|..+..+++.   .++++++|+|+
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~   45 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDP   45 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCH
Confidence            445679999999999999999987   47999999985

>PTZ00146 fibrillarin; Provisional

Probab=98.03  E-value=8.3e-06  Score=59.29  Aligned_cols=38  Identities=11%  Similarity=0.140  Sum_probs=34.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+..+|||+|||+|+.+..+|..+++.++|+++|+++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~  167 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH  167 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH
Confidence            45677999999999999999999998889999999874

>PLN02244 tocopherol O-methyltransferase

Probab=98.03  E-value=1.7e-05  Score=58.11  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=30.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..  +++|+++|+++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~  151 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSP  151 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCH
Confidence            456899999999999999999876  47999999985

>PRK04148 hypothetical protein; Provisional

Probab=98.02  E-value=1.6e-05  Score=51.91  Aligned_cols=44  Identities=16%  Similarity=0.086  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGY-SLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~-sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+|..-....+.++|||||||+|. .+..|++.   +..|+++|+|+
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~   49 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINE   49 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCH
Confidence            4444443344456899999999998 66666642   57999999986

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.02  E-value=1.2e-05  Score=60.72  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++..++...+..+|||+|||+|..|+.+++.+++.|+|+++|+++
T Consensus       241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~  287 (434)
T PRK14901        241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA  287 (434)
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH
Confidence            44555555666778999999999999999999988779999999875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.02  E-value=1.4e-05  Score=56.15  Aligned_cols=49  Identities=14%  Similarity=0.020  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++...+-+...+...++.+|||||||+|..|..+++..+   +|+++|+|+
T Consensus        13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~   61 (253)
T TIGR00755        13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDP   61 (253)
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCH
Confidence            4454444333334556788999999999999999998754   599999985

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02672 methionine S-methyltransferase

Probab=98.01  E-value=1.5e-05  Score=66.26  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             ccCCHHHHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.|++-.++..+....    ++++|||+|||+|+.++.+++..+ .++|+++|+|+
T Consensus        96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~  152 (1082)
T PLN02672         96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINP  152 (1082)
T ss_pred             ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCH
Confidence            355667776766633321    346899999999999999999987 68999999986

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.01  E-value=1.5e-05  Score=53.81  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=33.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~   74 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS   74 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH
Confidence            34788999999999999999999988558999999874

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.00  E-value=1.6e-05  Score=59.79  Aligned_cols=47  Identities=15%  Similarity=0.134  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..++...++.+|||+|||+|+.|+.+++.++ +++|+++|+++
T Consensus       226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~  272 (426)
T TIGR00563       226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHE  272 (426)
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCH
Confidence            344555555666788999999999999999999998 89999999975

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.00  E-value=2.3e-06  Score=52.43  Aligned_cols=31  Identities=42%  Similarity=0.627  Sum_probs=5.5

Q ss_pred             EEEcccccHHHHHHHhhCCCCC--EEEEEecCC
Q 044836           59 MEIGVYTGYSLLVTALAIPDDG--KVQWMNTNL   89 (90)
Q Consensus        59 LEiGt~~G~sal~la~~~~~~~--~v~~ie~~~   89 (90)
                      |||||+.|+||+++++++++++  +++++|..+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~   33 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP   33 (106)
T ss_dssp             --------------------------EEEESS-
T ss_pred             CccccccccccccccccccccccCCEEEEECCC
Confidence            7999999999999999999765  899999875

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.99  E-value=1.5e-05  Score=55.17  Aligned_cols=33  Identities=9%  Similarity=-0.132  Sum_probs=29.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+||++|||.|..+++||+.   +-.|+++|+++
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~   66 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSE   66 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCH
Confidence            5579999999999999999974   67999999986

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.99  E-value=1e-05  Score=55.31  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=29.8

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++|||||||+|..+..+++..+ +.+++++|+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~   33 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISP   33 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCH
Confidence            5899999999999999999886 68999999875

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.98  E-value=2.4e-05  Score=53.23  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=33.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||||||+|..+..++...+++.+++++|+++
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~   86 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE   86 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence            34567999999999999999999987678999999875

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=1.4e-05  Score=58.33  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.-+--|+..|-..... +|||+|||.|+.++++|+..| ..+|+.+|+|.
T Consensus       144 D~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~  192 (300)
T COG2813         144 DKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNA  192 (300)
T ss_pred             ChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCH
Confidence            34445566665555555 999999999999999999998 89999999984

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.97  E-value=1.6e-05  Score=58.68  Aligned_cols=45  Identities=18%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+ ......+|||+|||+|..++.+++..| +.+|+++|+++
T Consensus       186 ~lLl~~l-~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~  230 (342)
T PRK09489        186 QLLLSTL-TPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSA  230 (342)
T ss_pred             HHHHHhc-cccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCH
Confidence            3344433 333456899999999999999999877 78999999984

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.97  E-value=8.2e-05  Score=52.74  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCC--CEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDD--GKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~--~~v~~ie~~~   89 (90)
                      +..+|||||||+|+.+..+++.+++.  ..++++|+++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~  122 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK  122 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH
Confidence            45789999999999999999988743  4899999985

>TIGR03438 probable methyltransferase

Probab=97.97  E-value=2.3e-05  Score=56.61  Aligned_cols=50  Identities=12%  Similarity=0.019  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHH-----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~-----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|...++     ..++.+|||+|||+|.-|..++++++...+++++|+++
T Consensus        44 r~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~   98 (301)
T TIGR03438        44 RTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA   98 (301)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence            445566665444     23568999999999999999999987568999999985

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.96  E-value=3.3e-06  Score=50.89  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           59 MEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        59 LEiGt~~G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ||||||+|..+..+++..+ ..+++++|+|+.
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~   31 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPS   31 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSS
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHH
Confidence            7999999999999999996 899999999973

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.95  E-value=1.9e-05  Score=57.27  Aligned_cols=50  Identities=16%  Similarity=0.039  Sum_probs=38.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++.....+...+...+..+|||||||+|..|..+++.   .++|+++|+|+
T Consensus        19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~   68 (294)
T PTZ00338         19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDP   68 (294)
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCH
Confidence            345555554444455567789999999999999999986   46899999985

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.94  E-value=1.7e-05  Score=59.73  Aligned_cols=46  Identities=17%  Similarity=0.162  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+...++...++.+|||+|||+|..|+.+++..+ +++|+++|+++
T Consensus       233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~  278 (427)
T PRK10901        233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDA  278 (427)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCH
Confidence            33444455666788999999999999999999887 48999999985

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.93  E-value=1.8e-05  Score=57.87  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|+.+..++..-  ..+|+++|+++
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~  155 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQ  155 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCH
Confidence            467899999999999999999873  34799999874

>PRK06922 hypothetical protein; Provisional

Probab=97.92  E-value=2.3e-05  Score=62.32  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=37.1

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+....++.+|||||||+|..+..+++..| +++++++|+++
T Consensus       409 ~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~  452 (677)
T PRK06922        409 DKRIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISE  452 (677)
T ss_pred             HHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCH
Confidence            334455666889999999999999999999887 89999999985

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=1.8e-05  Score=54.50  Aligned_cols=38  Identities=21%  Similarity=0.067  Sum_probs=34.9

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+++-++|||||+|+.+..+++.+.++....+.|+||
T Consensus        41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp   78 (209)
T KOG3191|consen   41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP   78 (209)
T ss_pred             hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH
Confidence            34599999999999999999999999889999999997

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.90  E-value=6e-05  Score=48.77  Aligned_cols=47  Identities=17%  Similarity=0.168  Sum_probs=37.4

Q ss_pred             HHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEecCC
Q 044836           43 AQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIP---DDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~---~~~~v~~ie~~~   89 (90)
                      ++++..++..    .++.+|+|+|+|.||.+..++..++   .+-+|++||.++
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE   63 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence            4455555555    7889999999999999999999432   368999999886

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.89  E-value=3.5e-05  Score=53.00  Aligned_cols=43  Identities=9%  Similarity=0.027  Sum_probs=32.8

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+....+..+|||+|||+|..++.+++..  .++|+++|+++
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~   86 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDR   86 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCH
Confidence            45555555667899999999999999654432  46999999875

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.89  E-value=2.5e-05  Score=58.32  Aligned_cols=36  Identities=17%  Similarity=-0.000  Sum_probs=31.2

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++..  +++|+++|+++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~  200 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISA  200 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCH
Confidence            3567899999999999999999875  47999999985

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.88  E-value=2.3e-05  Score=53.88  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.. ++..++.++||+|||.|-.+++||+.   +-.|+++|.++
T Consensus        20 s~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~   62 (192)
T PF03848_consen   20 SEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISP   62 (192)
T ss_dssp             HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSH
T ss_pred             HHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCH
Confidence            344444 66778999999999999999999996   78999999875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.87  E-value=1.9e-05  Score=46.12  Aligned_cols=29  Identities=21%  Similarity=0.156  Sum_probs=25.0

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           59 MEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        59 LEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ||||||+|..+..+++. + ..+|+++|+++
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~   29 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISE   29 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-H
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCH
Confidence            89999999999999998 4 89999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.87  E-value=3e-05  Score=55.01  Aligned_cols=45  Identities=16%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .-.++.. +...+..+|||||||+|..+..+++..  +++|+++|+++
T Consensus        41 ~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~   85 (263)
T PTZ00098         41 TTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE   85 (263)
T ss_pred             HHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence            3334433 455678899999999999999998754  57999999875

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.86  E-value=5.8e-05  Score=50.55  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||+|||+|..++.+|+..+ ..+|+.-|.++
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~   79 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE   79 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S-
T ss_pred             hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch
Confidence            46789999999999999999999854 67899988764

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK14967 putative methyltransferase; Provisional

Probab=97.84  E-value=4.6e-05  Score=52.52  Aligned_cols=35  Identities=14%  Similarity=0.151  Sum_probs=29.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|||+|..++.+++. + .++|+++|+++
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~   69 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR   69 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH
Confidence            44579999999999999999975 3 46999999985

>PRK00811 spermidine synthase; Provisional

Probab=97.84  E-value=2.8e-05  Score=55.80  Aligned_cols=36  Identities=19%  Similarity=0.088  Sum_probs=31.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||+||||.|..+.++++.-+ ..+|+++|+|+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~  110 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE  110 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH
Confidence            5789999999999999999987633 67999999986

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.84  E-value=2.2e-05  Score=47.61  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=24.7

Q ss_pred             EEEEcccccHHHHHHHhhCCC--CCEEEEEecCC
Q 044836           58 TMEIGVYTGYSLLVTALAIPD--DGKVQWMNTNL   89 (90)
Q Consensus        58 vLEiGt~~G~sal~la~~~~~--~~~v~~ie~~~   89 (90)
                      |||+|||+|-.+..++...+.  ..+++++|+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~   34 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP   34 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-H
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH
Confidence            799999999999999999833  38999999985

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.82  E-value=2.1e-05  Score=50.10  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=28.9

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++||||+.|+.++++++..+ .++++++|.++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCH
Confidence            489999999999999999876 67999999986

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.82  E-value=2.6e-05  Score=57.25  Aligned_cols=33  Identities=15%  Similarity=0.032  Sum_probs=28.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|+.+..+++.   +++|++||.++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~  163 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVD  163 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCH
Confidence            4569999999999999999863   68999999875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.82  E-value=3.6e-05  Score=58.26  Aligned_cols=43  Identities=19%  Similarity=0.266  Sum_probs=34.2

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.. +...++.+|||||||+|..++.+++..  +.+|+++|+++
T Consensus       257 ~l~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~  299 (475)
T PLN02336        257 EFVDK-LDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSV  299 (475)
T ss_pred             HHHHh-cCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCH
Confidence            34433 334567899999999999999999876  57999999985

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.82  E-value=4.6e-05  Score=52.98  Aligned_cols=33  Identities=9%  Similarity=-0.090  Sum_probs=29.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+||++|||.|..++|||+.   +.+|+++|+++
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~   69 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSE   69 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCH
Confidence            4579999999999999999973   67999999985

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.81  E-value=0.00011  Score=50.41  Aligned_cols=46  Identities=11%  Similarity=0.053  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++.......+.++|||||||+|..+..+++.   ..+++++|+++
T Consensus        35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~   80 (233)
T PRK05134         35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASE   80 (233)
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCH
Confidence            33445555555567889999999999999988875   46899999875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.81  E-value=3.3e-05  Score=47.44  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=29.6

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+|||+|||+|..++.+++..  ..+++++|+|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~   33 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDP   33 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSH
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECH
Confidence            3589999999999999999886  58999999986

...

>PHA03412 putative methyltransferase; Provisional

Probab=97.80  E-value=6.1e-05  Score=53.47  Aligned_cols=51  Identities=8%  Similarity=0.072  Sum_probs=38.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIP--DDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~--~~~~v~~ie~~~   89 (90)
                      ..++..++.+.  .......+|||+|||+|..++.+++.++  ...+|+++|+|+
T Consensus        34 fTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~   86 (241)
T PHA03412         34 FTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH   86 (241)
T ss_pred             CCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence            45556656542  2344578999999999999999998764  257999999985

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.79  E-value=5.8e-05  Score=55.27  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=29.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..++.+++.   +.+|+++|+++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~  176 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISA  176 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCH
Confidence            5679999999999999999974   57999999985

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.79  E-value=4.1e-05  Score=57.61  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .....+||||||+|..++.+|+..| +..++++|+++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~  156 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHT  156 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCH
Confidence            3456999999999999999999997 78999999874

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.78  E-value=3.6e-05  Score=54.07  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=30.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||+|||+|+.|.++++. + ..+|+++|+++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~  108 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGY  108 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCH
Confidence            36679999999999999999986 4 57999999874

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.76  E-value=4.7e-05  Score=55.18  Aligned_cols=38  Identities=18%  Similarity=0.046  Sum_probs=33.7

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++.++++|||||||-|..++++|+..  +.+|+++++|+
T Consensus        68 l~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~  105 (283)
T COG2230          68 LGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE  105 (283)
T ss_pred             cCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH
Confidence            346789999999999999999999987  58999999875

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.74  E-value=4.5e-05  Score=56.06  Aligned_cols=35  Identities=9%  Similarity=0.005  Sum_probs=31.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..++||||||+|.....++...+ +.+++++|+|+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~  148 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDP  148 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCH
Confidence            457999999999999999998877 78999999986

>PRK01581 speE spermidine synthase; Validated

Probab=97.73  E-value=5.1e-05  Score=56.82  Aligned_cols=52  Identities=21%  Similarity=0.236  Sum_probs=38.2

Q ss_pred             cCCHHHHHHHHHHHH-----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~-----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.-..-.++++     ..+|++||+||+|+|+.+..+.+. ++..+|+++|+|+
T Consensus       128 ~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDp  184 (374)
T PRK01581        128 FSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDG  184 (374)
T ss_pred             cccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCH
Confidence            344444444444443     468999999999999988888775 3368999999986

>TIGR00452 methyltransferase, putative

Probab=97.72  E-value=5.2e-05  Score=55.50  Aligned_cols=35  Identities=9%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||||||+|+.+..++.. + ..+|+++|+++
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~  154 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTV  154 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCH
Confidence            56789999999999999888865 2 34899999875

Known examples to date are restricted to the proteobacteria.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=0.00016  Score=49.84  Aligned_cols=50  Identities=24%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             cCCHHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++..+.+|. .+.+   ...++|+|+|||||..++..+. ++ ..+|+++|+|+
T Consensus        26 Tp~~~Aa~il~-~a~~~g~l~g~~V~DlG~GTG~La~ga~~-lG-a~~V~~vdiD~   78 (198)
T COG2263          26 TPAPLAAYILW-VAYLRGDLEGKTVLDLGAGTGILAIGAAL-LG-ASRVLAVDIDP   78 (198)
T ss_pred             CChHHHHHHHH-HHHHcCCcCCCEEEEcCCCcCHHHHHHHh-cC-CcEEEEEecCH
Confidence            33444444444 4544   4678999999999998887775 44 57999999986

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00012  Score=52.56  Aligned_cols=37  Identities=16%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+...|||||+|.|..|..|++.   ..+|+++|+|+
T Consensus        26 a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~   62 (259)
T COG0030          26 ANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDR   62 (259)
T ss_pred             cCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCH
Confidence            34455678999999999999999997   56799999985

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.68  E-value=0.0001  Score=53.42  Aligned_cols=34  Identities=9%  Similarity=-0.025  Sum_probs=30.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||+|||+|..++.+|+.   ..+|+++|+++
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~  205 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISA  205 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCH
Confidence            35789999999999999999983   57999999885

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=8.7e-05  Score=53.88  Aligned_cols=52  Identities=25%  Similarity=0.298  Sum_probs=45.1

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +...||-+.++.+ ....++.+|+|-|||+|-.+.++++++.+.|+++++|..
T Consensus        88 I~Yt~Dia~I~~~-L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH  139 (314)
T KOG2915|consen   88 ILYTPDIAMILSM-LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH  139 (314)
T ss_pred             EEecccHHHHHHH-hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec
Confidence            4566776655555 889999999999999999999999999999999999974

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.67  E-value=3.6e-05  Score=55.26  Aligned_cols=38  Identities=18%  Similarity=0.104  Sum_probs=28.0

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.++.+|||||||-|..++++|+..  +.+|++|.+++
T Consensus        58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~   95 (273)
T PF02353_consen   58 LGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSE   95 (273)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-H
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCH
Confidence            346788999999999999999999986  47999999874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.67  E-value=5.7e-05  Score=53.60  Aligned_cols=47  Identities=13%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |-.-.+.+..++.   ...++|||||||-|..+..||+.   ++.|+++|.++
T Consensus        42 ~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se   91 (243)
T COG2227          42 PLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASE   91 (243)
T ss_pred             cchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCCh
Confidence            4444455554554   57899999999999999999985   69999999875

>PHA03411 putative methyltransferase; Provisional

Probab=97.66  E-value=0.00016  Score=52.35  Aligned_cols=38  Identities=8%  Similarity=-0.006  Sum_probs=31.8

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ......+|||+|||+|..++.+++..+ ..+|+++|+++
T Consensus        61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp   98 (279)
T PHA03411         61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP   98 (279)
T ss_pred             ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH
Confidence            344567999999999999999988765 57999999985

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.66  E-value=0.00012  Score=52.64  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+..+.++|||||||+|..++.+++..| +.+++.+|.
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~  181 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL  181 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec
Confidence            3445778999999999999999999998 789999985

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.65  E-value=9e-05  Score=54.85  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+|||||||+|..++.+++.++ +.+++++|.++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~  147 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSP  147 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCH
Confidence            467999999999999999999886 58999999874

>PLN02366 spermidine synthase

Probab=97.63  E-value=0.00017  Score=52.61  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHHHHH-----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~-----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++....-.++++     ..+|++||+||+|.|..+.++++. +...+|+.+|+|+
T Consensus        70 ~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~  125 (308)
T PLN02366         70 TERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDK  125 (308)
T ss_pred             cCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCH
Confidence            34444444445444     357999999999999999999986 5467999999985

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.58  E-value=0.0001  Score=42.43  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=26.9

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++|+|||.|..+..+++  ....+++++|.++
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~   31 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISP   31 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCH
Confidence            589999999999999998  3378999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00417 speE spermidine synthase

Probab=97.53  E-value=0.00015  Score=51.60  Aligned_cols=36  Identities=19%  Similarity=0.070  Sum_probs=31.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||+||+|+|..+..+++..+ ..+++.+|+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~  106 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDE  106 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCH
Confidence            5788999999999999988887654 67899999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.53  E-value=0.00019  Score=54.34  Aligned_cols=34  Identities=12%  Similarity=-0.056  Sum_probs=29.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|||+|..++.+|+.   .++|+++|+++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~  329 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVE  329 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCH
Confidence            35679999999999999999986   36899999985

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.51  E-value=0.00022  Score=48.01  Aligned_cols=35  Identities=9%  Similarity=0.016  Sum_probs=28.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+++..  ...++++|+++
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~   46 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQ   46 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCH
Confidence            356799999999999999998764  35789999874

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.51  E-value=0.00026  Score=56.57  Aligned_cols=40  Identities=18%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+..++++|||+|||+|..+++++++ + ..+|+++|+++
T Consensus       532 ~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~  571 (702)
T PRK11783        532 MIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSN  571 (702)
T ss_pred             HHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCH
Confidence            3455668899999999999999999985 3 45799999985

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.50  E-value=0.00036  Score=47.48  Aligned_cols=47  Identities=11%  Similarity=0.135  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+++...+..    .++.+|||+|||+|+.+..+++.   ..+++++|+++
T Consensus        27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~   77 (224)
T TIGR01983        27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASE   77 (224)
T ss_pred             HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCH
Confidence            4444555544443    34789999999999999998875   35699999874

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.49  E-value=0.00027  Score=51.47  Aligned_cols=44  Identities=7%  Similarity=-0.022  Sum_probs=36.6

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..| ...++..+||.+||.|.-|..+++.++++++|+++|.|+
T Consensus        11 vl~~L-~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~   54 (296)
T PRK00050         11 VVDAL-AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP   54 (296)
T ss_pred             HHHhh-CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence            44443 234567999999999999999999998789999999986

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.48  E-value=0.0002  Score=54.18  Aligned_cols=36  Identities=19%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++|||||||+|..+..+++.   ..+|+++|+++
T Consensus        34 ~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~   69 (475)
T PLN02336         34 PPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIE   69 (475)
T ss_pred             CccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCH
Confidence            3445679999999999999999986   46899999875

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.45  E-value=0.00027  Score=53.23  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=30.0

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..++++|||+|||+|..++..+.  +...+|+++|+++
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~  253 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQ  253 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCH
Confidence            456789999999999999887664  3256999999985

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.44  E-value=0.00026  Score=53.19  Aligned_cols=34  Identities=12%  Similarity=-0.102  Sum_probs=29.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|||+|..++.+|+.   ..+|+++|+++
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~  324 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVP  324 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCH
Confidence            35679999999999999999986   35899999975

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.43  E-value=0.00036  Score=50.85  Aligned_cols=48  Identities=19%  Similarity=0.168  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|..+..+..++...+..+|||+|||+|..++..+..   +++++++|+|+
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~  214 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDW  214 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCH
Confidence            4566666666677777889999999999987775542   68999999985

This family is found exclusively in the Archaea.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.41  E-value=0.00018  Score=51.61  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||||-+|..|+.||+... .-.|.++|||+
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~   92 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDP   92 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccH
Confidence            45799999999999999999999998 67899999986

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.41  E-value=0.00039  Score=50.56  Aligned_cols=48  Identities=19%  Similarity=0.071  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|....=+..-+.+.++..|||||.|||-.|..|.++   +.+|+++|+|+
T Consensus        43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dp   90 (315)
T KOG0820|consen   43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDP   90 (315)
T ss_pred             CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCc
Confidence            3444444444456678889999999999999999987   78999999986

>PRK03612 spermidine synthase; Provisional

Probab=97.40  E-value=0.00028  Score=54.66  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=31.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++||+||+|+|..+..+++. ++..+|+.+|+|+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~  331 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDP  331 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCH
Confidence            57899999999999999999874 5347999999986

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.31  E-value=0.00035  Score=49.50  Aligned_cols=49  Identities=18%  Similarity=0.086  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++..++-+...+...+...|||||+|.|..|..|++..   .+++++|+|+
T Consensus        14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~   62 (262)
T PF00398_consen   14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDP   62 (262)
T ss_dssp             EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcH
Confidence            456666666666666788999999999999999999885   7899999985

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.31  E-value=0.00038  Score=51.12  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=30.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -...++||||||+.||-+..|+..=  ...|+++|.++
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~  148 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSP  148 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCCh
Confidence            4688999999999999999999862  46799999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.28  E-value=0.00076  Score=46.07  Aligned_cols=54  Identities=11%  Similarity=-0.020  Sum_probs=42.5

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+++..++.+...+.-.++.-|||+|.|||..|-.+.+..-++..++++|.++
T Consensus        30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~   83 (194)
T COG3963          30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP   83 (194)
T ss_pred             cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH
Confidence            345556666666555666788999999999999998888766688999999875

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.25  E-value=0.0007  Score=50.37  Aligned_cols=34  Identities=15%  Similarity=-0.013  Sum_probs=29.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||+|||+|..++.+|..   ..+|+++|+++
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~  265 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIES  265 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCH
Confidence            45789999999999999999953   57899999985

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.24  E-value=0.00021  Score=51.57  Aligned_cols=31  Identities=13%  Similarity=0.089  Sum_probs=27.9

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++|||+|||+|..+.-||+.   ++.|++||.++
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~  121 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASD  121 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccH
Confidence            67999999999999999985   68999999863

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.24  E-value=0.00067  Score=48.28  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=27.4

Q ss_pred             CCCeEEEEcccccHH----HHHHHhhCCC----CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYS----LLVTALAIPD----DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~s----al~la~~~~~----~~~v~~ie~~~   89 (90)
                      ++.+|+++|||+|-.    |+.+++..+.    +.+|+++|+|+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~  142 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL  142 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence            456999999999974    4555565542    57999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.24  E-value=0.00088  Score=49.57  Aligned_cols=47  Identities=13%  Similarity=0.031  Sum_probs=34.2

Q ss_pred             HHHHH-HHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQ-FLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~-ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.. ++..+....+  +.+|||+|||+|..++.+++..   .+|+++|+++
T Consensus       180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~  229 (353)
T TIGR02143       180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAK  229 (353)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCH
Confidence            43333 3444444433  4579999999999999999874   4899999875

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.20  E-value=0.00039  Score=49.40  Aligned_cols=50  Identities=18%  Similarity=0.083  Sum_probs=34.6

Q ss_pred             cCCHHHHHHHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+..+---.|..+..  +.-|||||||+|.|+..+...   +-..+++|+++
T Consensus        31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSp   82 (270)
T KOG1541|consen   31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISP   82 (270)
T ss_pred             eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCH
Confidence            333444433334455555  779999999999999877653   45678999886

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.18  E-value=0.0015  Score=44.45  Aligned_cols=43  Identities=9%  Similarity=-0.023  Sum_probs=33.4

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+....+.++|||++||+|..++.+++.-  ..+|+.+|.++
T Consensus        40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~   82 (189)
T TIGR00095        40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDR   82 (189)
T ss_pred             HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCH
Confidence            33343344578999999999999999999863  35899999875

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0006  Score=47.96  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=35.9

Q ss_pred             CCHHHHH-HHHHHH-HhcCCCeEEEEcccccHHHHHHHhhCCCCCEE-EEEec
Q 044836           38 SAPDEAQ-FLSMLL-KLINAKNTMEIGVYTGYSLLVTALAIPDDGKV-QWMNT   87 (90)
Q Consensus        38 ~~~~~~~-ll~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v-~~ie~   87 (90)
                      +.|..-+ .|..|- .+.+.-+.|+||+|+||.+.+++.-+...|.+ ++||.
T Consensus        64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh  116 (237)
T KOG1661|consen   64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH  116 (237)
T ss_pred             cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhh
Confidence            3444443 444433 37788899999999999999999777766654 77764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.12  E-value=0.00087  Score=45.86  Aligned_cols=31  Identities=26%  Similarity=0.185  Sum_probs=27.7

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+||||||.|-..+.+|+..| +..++++|+.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~   50 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIR   50 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecc
Confidence            899999999999999999998 7899999975

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02823 spermine synthase

Probab=97.11  E-value=0.00093  Score=49.40  Aligned_cols=36  Identities=17%  Similarity=0.023  Sum_probs=31.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||.||+|.|.++.++.+.-+ ..+|+.+|+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~  137 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQ  137 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCH
Confidence            4789999999999999998888544 57999999986

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.10  E-value=0.0017  Score=45.65  Aligned_cols=58  Identities=22%  Similarity=0.117  Sum_probs=38.8

Q ss_pred             hCCCccccCCHHHH-HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           30 KHPQNFMFSAPDEA-QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        30 ~~~~p~m~~~~~~~-~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +..+|.+..++..- .=+..+........+||||||.|-+.+.+|...| +--+++||+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~   81 (227)
T COG0220          23 EDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIR   81 (227)
T ss_pred             HhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEe
Confidence            45566555555322 0011222222346899999999999999999999 6689999874

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=97.03  E-value=0.0012  Score=46.05  Aligned_cols=56  Identities=21%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecC
Q 044836           32 PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTN   88 (90)
Q Consensus        32 ~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~   88 (90)
                      |+|.+.. |.--...+.++-..+|..|+|+|+--|.|++++|..+-.   ..+|.++|+|
T Consensus        48 G~p~~k~-p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdId  106 (237)
T COG3510          48 GIPCIKS-PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDID  106 (237)
T ss_pred             cccccCC-HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecc
Confidence            5676654 444558889999999999999999999999999986543   3699999986

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.99  E-value=0.0013  Score=45.89  Aligned_cols=48  Identities=21%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.|.--+++.. ....++.+||..|||.|+-.+|||+.   +-+|+++|+++
T Consensus        22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~   69 (218)
T PF05724_consen   22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSP   69 (218)
T ss_dssp             STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-H
T ss_pred             CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCH
Confidence            34554444444 33556679999999999999999985   57999999875

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.97  E-value=0.0023  Score=47.48  Aligned_cols=48  Identities=15%  Similarity=0.076  Sum_probs=34.0

Q ss_pred             CHHHHH-HHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQ-FLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~-ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+.+ ++..+....+  +.+|||++||+|..++.+++..   .+|+++|+++
T Consensus       188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~  238 (362)
T PRK05031        188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISK  238 (362)
T ss_pred             CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCH
Confidence            333344 3334344333  3589999999999999999874   5899999875

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.96  E-value=0.003  Score=47.41  Aligned_cols=34  Identities=18%  Similarity=0.077  Sum_probs=30.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+|||++||+|.-++.+|...+ ..+|+++|+|+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~   91 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINP   91 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCH
Confidence            35899999999999999998876 56899999986

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.91  E-value=0.0016  Score=45.23  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             HHHHHHHhc-CCC-eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           45 FLSMLLKLI-NAK-NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        45 ll~~l~~~~-~~~-~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      ++..|.+.. +.. +|||||+|||--+.++|+.+| +-+-..-|.+
T Consensus        14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~   58 (204)
T PF06080_consen   14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPD   58 (204)
T ss_pred             HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCC
Confidence            444444433 233 599999999999999999999 5444444443

The function of this family is unknown.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.89  E-value=0.0013  Score=48.82  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +.+.|.|||+|||||..++.-|++=  ..+|+++|-+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S   92 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS   92 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEech
Confidence            6789999999999999999999873  5799999965

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.82  E-value=0.0033  Score=45.01  Aligned_cols=37  Identities=11%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++|||+|+|.|..+.+....++.-.+++++|.++
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~   68 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP   68 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH
Confidence            4789999999999998888888888667899999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.79  E-value=0.005  Score=40.88  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||+|++.|.-+-++.+...+.++|+++|+.+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~   58 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP   58 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence            458999999999999999999985579999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.77  E-value=0.0032  Score=44.26  Aligned_cols=33  Identities=9%  Similarity=-0.107  Sum_probs=29.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+||..|||.|.-++|||+.   +-+|+++|+++
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~   75 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSE   75 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCH
Confidence            4579999999999999999985   67899999985

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=96.68  E-value=0.005  Score=42.48  Aligned_cols=35  Identities=9%  Similarity=-0.022  Sum_probs=29.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|||.|-.-.+|.+.  .+.+.+++|+++
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~   46 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDP   46 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCH
Confidence            45789999999999988888875  368899999985

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.67  E-value=0.0017  Score=44.86  Aligned_cols=38  Identities=13%  Similarity=-0.069  Sum_probs=28.8

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ..+..+|+|.-||.|+.++.+|+.-+ ..+|+++|+||+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~  136 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPD  136 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HH
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHH
Confidence            46788999999999999999998544 688999999974

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.66  E-value=0.0059  Score=47.09  Aligned_cols=39  Identities=8%  Similarity=0.066  Sum_probs=35.3

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||++++.|.-|..+|+.+++.|.|+++|+++
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~  148 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA  148 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH
Confidence            346778999999999999999999999889999999975

>PHA01634 hypothetical protein

Probab=96.51  E-value=0.0039  Score=40.99  Aligned_cols=35  Identities=17%  Similarity=0.086  Sum_probs=30.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|++||.+.|-|+++++.. + ..+|+++|.++
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~-G-AK~Vva~E~~~   61 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLR-G-ASFVVQYEKEE   61 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhc-C-ccEEEEeccCH
Confidence            47899999999999999999975 2 56999999875

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.49  E-value=0.0046  Score=41.60  Aligned_cols=46  Identities=20%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++.+.-..   ..+++++++|||+|...  ++..++.+-.|.++|++|
T Consensus        33 AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdp   81 (185)
T KOG3420|consen   33 AASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDP   81 (185)
T ss_pred             HHHHHHHHHhhhccccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCH
Confidence            34455553332   46899999999999977  666777788999999987

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=96.43  E-value=0.0039  Score=43.25  Aligned_cols=32  Identities=13%  Similarity=0.113  Sum_probs=25.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -.++||+||+.|..|..||...   .+++++|+++
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~   75 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISP   75 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-H
T ss_pred             cceeEecCCCccHHHHHHHHhh---CceEEEeCCH
Confidence            3599999999999999999874   5899999874

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.31  E-value=0.011  Score=40.81  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ...+.++|+|||.|+|..+..++++.| +.+++.+|.
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl  132 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL  132 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc
Confidence            345778999999999999999999999 789998885

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.18  E-value=0.0081  Score=40.94  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=28.1

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +++|||||.|+=++-+|-..| +.+++-+|.+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~   81 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESV   81 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCC
Confidence            899999999999999999998 8899999975

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.09  E-value=0.0027  Score=45.52  Aligned_cols=33  Identities=9%  Similarity=0.089  Sum_probs=26.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +-+++||+|||||..+-.+-..   ..+++++|+|+
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~  157 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISE  157 (287)
T ss_pred             ccceeeecccCcCcccHhHHHH---HhhccCCchhH
Confidence            4679999999999998877654   35788888874

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.05  E-value=0.012  Score=45.11  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=26.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC---CCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIP---DDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~---~~~~v~~ie~~~   89 (90)
                      .+.|++||||+|-.....+++..   ...+|++||.|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~  224 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP  224 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence            46899999999999877776642   246999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.04  E-value=0.0087  Score=42.99  Aligned_cols=37  Identities=11%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~   89 (90)
                      ++..+..+|||-.||-||.|+.-++.   ++ +|+|+|.||
T Consensus       130 V~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp  167 (287)
T COG2521         130 VKVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDP  167 (287)
T ss_pred             eccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCC
Confidence            34457889999999999999987775   56 999999886

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.97  E-value=0.011  Score=45.73  Aligned_cols=34  Identities=24%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +...+||||||.|-..+.+|...| +.-++++|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~  380 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVY  380 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEee
Confidence            467899999999999999999998 6789999975

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=95.92  E-value=0.0096  Score=40.02  Aligned_cols=31  Identities=10%  Similarity=0.044  Sum_probs=25.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.|+|+.||.|..|+.+|+..   .+|++||+|+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~   31 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDP   31 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-H
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCH
Confidence            479999999999999999983   5799999986

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.91  E-value=0.01  Score=41.51  Aligned_cols=33  Identities=33%  Similarity=0.502  Sum_probs=29.6

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +++++|||+|.|.=++-+|-..| +.+|+-+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~  100 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESL  100 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccC
Confidence            79999999999999999997777 6779999875

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.90  E-value=0.034  Score=41.65  Aligned_cols=34  Identities=9%  Similarity=-0.017  Sum_probs=29.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+++||||+++|.-|-.+++.   +++|++||..+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~  243 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP  243 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh
Confidence            57789999999999999999986   67999999754

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.87  E-value=0.026  Score=42.38  Aligned_cols=56  Identities=16%  Similarity=-0.019  Sum_probs=40.9

Q ss_pred             ccccCCHHHHHH-HHHHHHhcCC---CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           34 NFMFSAPDEAQF-LSMLLKLINA---KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        34 p~m~~~~~~~~l-l~~l~~~~~~---~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |.|....|..-+ +..+.+..+.   -+|||.-+|+|.-++.+++..+...+|+++|+|+
T Consensus        20 P~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~   79 (374)
T TIGR00308        20 PRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINP   79 (374)
T ss_pred             chhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH
Confidence            556666664433 3344444444   3899999999999999999875357999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=95.87  E-value=0.01  Score=42.58  Aligned_cols=44  Identities=9%  Similarity=0.053  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcCCC-eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAK-NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~-~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..++...+.. .++|+|||+|-.+..+|+..   -+|+++|+++
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~   65 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSE   65 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCH
Confidence            44777777766655 89999999997777777763   4699999875

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.76  E-value=0.016  Score=40.98  Aligned_cols=36  Identities=14%  Similarity=-0.023  Sum_probs=28.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||-||-|.|..+..+.+.- +..+|+.+|+|+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~  110 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDP  110 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-H
T ss_pred             CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecCh
Confidence            479999999999999988888654 368999999986

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.75  E-value=0.0051  Score=44.09  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=30.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .+.+|||||||.|-+..=+.+..++ +-+|+++|.+|
T Consensus        71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp  107 (264)
T KOG2361|consen   71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP  107 (264)
T ss_pred             ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh
Confidence            4458999999999999989988774 36999999775

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=95.74  E-value=0.016  Score=42.05  Aligned_cols=36  Identities=14%  Similarity=0.143  Sum_probs=32.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCC-----CEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDD-----GKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~-----~~v~~ie~~~   89 (90)
                      +..++||+++|||-.|..+.+.++..     ++|+.+|+||
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp  140 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP  140 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH
Confidence            44699999999999999999999842     8999999997

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.73  E-value=0.023  Score=41.21  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=31.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||.||.|-|..+..+.+..+ ..+++.+|+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~  110 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDP  110 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCH
Confidence            4568999999999999999888876 78999999986

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.65  E-value=0.055  Score=38.78  Aligned_cols=55  Identities=9%  Similarity=0.111  Sum_probs=40.2

Q ss_pred             cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhC------CCCCEEEEEecCC
Q 044836           35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAI------PDDGKVQWMNTNL   89 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~------~~~~~v~~ie~~~   89 (90)
                      ....+...+.++..++...+..+|+|-.||+|...+.+.+.+      ....+++++|+++
T Consensus        27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~   87 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP   87 (311)
T ss_dssp             GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H
T ss_pred             eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcH
Confidence            335667888888888877788899999999999988888754      1368999999875

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.57  E-value=0.023  Score=39.59  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|+|+|+.-|-=+-..++.++++++|+++|+.|
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            4679999999999999999999999889999999976

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=95.33  E-value=0.03  Score=39.33  Aligned_cols=51  Identities=25%  Similarity=0.219  Sum_probs=41.1

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccH--HHHHHHhhCCC-CCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGY--SLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~--sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .|+.++|+..|+.-.+++.++|+.+.-|.  +|+.||.+... +|++++|-.++
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~   79 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE   79 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh
Confidence            36789999999999999999999876543  57777766554 79999997764

The function of this family is unknown.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=95.22  E-value=0.083  Score=37.88  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCC----CCEEEEEecCC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPD----DGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~----~~~v~~ie~~~   89 (90)
                      ++.++..+-+.   .+...++|.|+|.|..+.|++..++.    ...++.||...
T Consensus         3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            45566665543   35669999999999999999999953    47889999754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.10  E-value=0.0084  Score=41.86  Aligned_cols=48  Identities=17%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           41 DEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        41 ~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ..|+.+...+-    ..+.|+|||+|+|+|.-++.-|++-  ...|++.|++|+
T Consensus        62 agG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~  113 (218)
T COG3897          62 AGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPW  113 (218)
T ss_pred             hhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhh--hHHHHhcCCChH
Confidence            34444444332    3578999999999999998888763  357777777653

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=95.08  E-value=0.045  Score=41.47  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+.|||+|+|+|..+...|.+ + ..+|+++|.++
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqA-G-A~~vYAvEAS~  210 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQA-G-AKKVYAVEASE  210 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHh-C-cceEEEEehhH
Confidence            47889999999999988877765 3 57999999753

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=95.07  E-value=0.059  Score=32.14  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=19.7

Q ss_pred             cCCCeEEEEcccccHHHH-HHHhhCCCCCEEEEE
Q 044836           53 INAKNTMEIGVYTGYSLL-VTALAIPDDGKVQWM   85 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal-~la~~~~~~~~v~~i   85 (90)
                      ..||+||-||+.+||.-. .++.+..-++.-+.+
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV   70 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV   70 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence            568999999999999432 355555544555444

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.02  E-value=0.096  Score=37.72  Aligned_cols=49  Identities=10%  Similarity=0.146  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+...++...+..+|||...+.|.=|..+|+.+++.|+|+++|+++
T Consensus        72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~  120 (283)
T PF01189_consen   72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP  120 (283)
T ss_dssp             HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH
T ss_pred             cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCH
Confidence            3344445556667788999999999999999999999899999999874

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.99  E-value=0.043  Score=38.83  Aligned_cols=38  Identities=13%  Similarity=0.157  Sum_probs=33.2

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+..+||=+|.++|.+-..++..++++|.|+++|.++
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~  108 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP  108 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc
Confidence            45688999999999999999999999999999999875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=94.85  E-value=0.056  Score=37.42  Aligned_cols=46  Identities=17%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.. +.+.+...++|||+|.|-..++.|...+ -.+.++||+.+
T Consensus        31 ~~~il~~-~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~   76 (205)
T PF08123_consen   31 VSKILDE-LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILP   76 (205)
T ss_dssp             HHHHHHH-TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SH
T ss_pred             HHHHHHH-hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEech
Confidence            3344433 4566778999999999998888887665 56799999864

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=0.096  Score=39.44  Aligned_cols=54  Identities=19%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             cCCHHHHHHHHHHHH---------hcC--CCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEecCCC
Q 044836           37 FSAPDEAQFLSMLLK---------LIN--AKNTMEIGVYTGYSLLVTALAIPD-------DGKVQWMNTNLY   90 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~---------~~~--~~~vLEiGt~~G~sal~la~~~~~-------~~~v~~ie~~~~   90 (90)
                      ...|+.++++..++.         .-.  +-+++|||.|.|..+.-|.+.+..       ..+++.||+|++
T Consensus        49 iTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~  120 (370)
T COG1565          49 ITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE  120 (370)
T ss_pred             eechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence            455666666554442         223  458999999999999988887632       478999998863

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.54  E-value=0.039  Score=42.98  Aligned_cols=29  Identities=21%  Similarity=0.174  Sum_probs=24.7

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .||+||||||..+++.+.+..  -+||++|.
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~Ev   97 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEV   97 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehh
Confidence            579999999999999888864  46999985

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=94.44  E-value=0.084  Score=37.06  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -..+-|+|+|+|..+...|++   .-+|++||.||
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dP   64 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDP   64 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCc
Confidence            378999999999999988887   46899999987

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.40  E-value=0.15  Score=35.80  Aligned_cols=36  Identities=14%  Similarity=0.026  Sum_probs=28.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCC-------CEEEEEecCCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDD-------GKVQWMNTNLY   90 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~-------~~v~~ie~~~~   90 (90)
                      +-+|+|+|.|.|..+.-+...+...       .+++.||++|+
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~   61 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY   61 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence            4599999999999999999988743       48999999875

; PDB: 4F3N_A 1ZKD_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.18  E-value=0.079  Score=40.95  Aligned_cols=52  Identities=10%  Similarity=0.057  Sum_probs=36.2

Q ss_pred             CCHHHHHHHHHHHHhc-------CCCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLI-------NAKNTMEIGVYTGYSLLVTALAIPD-------DGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~-------~~~~vLEiGt~~G~sal~la~~~~~-------~~~v~~ie~~~   89 (90)
                      .++..+.++..++...       ...+|||.|||+|...+.++..++.       .-.++++|+++
T Consensus         8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~   73 (524)
T TIGR02987         8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK   73 (524)
T ss_pred             CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence            3445555555433211       4569999999999999999988752       24678888875

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=93.75  E-value=0.055  Score=38.34  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=22.5

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|||||||||..=-..-  +.+..+||++|.|+
T Consensus        79 ~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~  109 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYP--WKPINSVTCLDPNE  109 (252)
T ss_pred             ceEEecccCCCCccccc--CCCCceEEEeCCcH
Confidence            67999999997533221  11478999999886

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=93.67  E-value=0.11  Score=38.57  Aligned_cols=51  Identities=14%  Similarity=0.057  Sum_probs=34.0

Q ss_pred             ccCCHHHHHHHHHHH-HhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLL-KLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~-~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.+.+.+-|...+ ...+  +.++||+=||+|..++.+|..   ..+|+++|+++
T Consensus       175 fQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~  228 (352)
T PF05958_consen  175 FQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVE  228 (352)
T ss_dssp             --SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-H
T ss_pred             ccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCH
Confidence            345555555555443 3333  338999999999999999986   46899999864

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=93.65  E-value=0.13  Score=30.07  Aligned_cols=38  Identities=18%  Similarity=0.105  Sum_probs=25.3

Q ss_pred             HhcCCCe-EEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKN-TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~-vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+... ++|+|||+|..+ .++...+....++++|.++
T Consensus        44 ~~~~~~~~~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~   82 (257)
T COG0500          44 RLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP   82 (257)
T ss_pred             hhccCCCeeEEecCCcCHHH-HHHHhCCCCceEEEEeCCH
Confidence            3333334 999999999988 5554444224788888764

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=93.45  E-value=0.094  Score=37.51  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIP   77 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~   77 (90)
                      ++++|||+|+|+|.-++.+|....
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~  109 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLG  109 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhc
Confidence            466899999999999999988654

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=93.22  E-value=0.083  Score=41.39  Aligned_cols=49  Identities=16%  Similarity=0.052  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..-..++.|+..++.    ...+.+||+-||||.+++.+|+.   -++|+++|+++
T Consensus       363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~  415 (534)
T KOG2187|consen  363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISP  415 (534)
T ss_pred             cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecCh
Confidence            344667777777764    35578899999999999999997   46899999886

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=93.13  E-value=0.22  Score=35.23  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhcCC-CeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           41 DEAQFLSMLLKLINA-KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~-~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      +...+.-.+.+..+. --+.|||||.|...+.++-..| +--|.++||
T Consensus        46 DWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEI   92 (249)
T KOG3115|consen   46 DWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEI   92 (249)
T ss_pred             cHHHhhhhhhhhccccceEEeeccCccchhhhccccCc-cceeeeehh
Confidence            455566665555443 4789999999999999999988 667777775

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.98  E-value=0.14  Score=36.03  Aligned_cols=46  Identities=13%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             HHHHHHHH--HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLL--KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~--~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+|.-|-  .+.+..+||=+|..+|.+..+++...+ +|.++++|.++
T Consensus        63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~  110 (231)
T COG1889          63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSP  110 (231)
T ss_pred             HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecc
Confidence            44444332  346788999999999999999999999 99999999875

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=92.81  E-value=0.24  Score=36.84  Aligned_cols=51  Identities=12%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~   89 (90)
                      ....+++...++.-.++.+|||...+-|.=|.++|+.+++.+ .|+++|+++
T Consensus       141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~  192 (355)
T COG0144         141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP  192 (355)
T ss_pred             cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH
Confidence            344555666667777889999999999999999999999744 559999874

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.76  E-value=0.23  Score=35.47  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=29.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+.+.+||||..||..|-.+.+. + ..+|+++|..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~-g-Ak~VyavDVG  111 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQR-G-AKHVYAVDVG  111 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHc-C-CcEEEEEEcc
Confidence            58899999999999999999875 2 5699999964

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=92.67  E-value=0.15  Score=32.42  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             EEccccc--HHHHHHHh-hCCCCCEEEEEecCC
Q 044836           60 EIGVYTG--YSLLVTAL-AIPDDGKVQWMNTNL   89 (90)
Q Consensus        60 EiGt~~G--~sal~la~-~~~~~~~v~~ie~~~   89 (90)
                      |||...|  .++.+++. ....+++|+++|.+|
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p   33 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP   33 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---H
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH
Confidence            7999999  77777753 355589999999986

; PDB: 2PY6_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=92.58  E-value=0.33  Score=35.66  Aligned_cols=37  Identities=5%  Similarity=-0.028  Sum_probs=32.9

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..++|--+|-|.-|..+++.++ +|+|+++|.|+
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~   54 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDP   54 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCH
Confidence            34567899999999999999999998 49999999986

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK00536 speE spermidine synthase; Provisional

Probab=92.58  E-value=0.24  Score=35.63  Aligned_cols=35  Identities=6%  Similarity=-0.073  Sum_probs=30.7

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+|++||-||.|=|..+.-+.+. +  .+|+.+|+|+
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~  104 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADE  104 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCH
Confidence            468999999999999999999887 3  3999999985

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=92.55  E-value=0.21  Score=36.90  Aligned_cols=45  Identities=9%  Similarity=-0.014  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|+..+++..    +..+|||+|||-|.=..=+..+ + -+.++++|+++
T Consensus        47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~   95 (331)
T PF03291_consen   47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISE   95 (331)
T ss_dssp             HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-H
T ss_pred             HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCH
Confidence            33455544432    6789999999988865555554 2 57999999874

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.53  E-value=0.35  Score=37.07  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +.++..+....+...++|+|.|.||.+-.|+-..+  -.|++||.|
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegs  185 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGS  185 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccc
Confidence            44555555667899999999999999999998764  789999976

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=92.42  E-value=0.17  Score=34.99  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=25.9

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           58 TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        58 vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |.||||--||..++|.+.-. ..+++++|+++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~   31 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINP   31 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSH
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCH
Confidence            67999999999999999744 56899999874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=92.31  E-value=0.22  Score=37.18  Aligned_cols=54  Identities=13%  Similarity=-0.025  Sum_probs=41.4

Q ss_pred             cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      +|+++.-..+=.+.+-....+..|+|.=+|.|+-|+-+|..-.  .+|+++|+||+
T Consensus       169 v~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~  222 (341)
T COG2520         169 VYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPD  222 (341)
T ss_pred             eEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHH
Confidence            3555555555555555566799999999999999999998743  34999999984

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=92.16  E-value=0.38  Score=32.56  Aligned_cols=48  Identities=10%  Similarity=0.083  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .--..++..|... ....++||+=+|||..++-..+. + ..+|+.||.|+
T Consensus        27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-G-A~~v~fVE~~~   75 (183)
T PF03602_consen   27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-G-AKSVVFVEKNR   75 (183)
T ss_dssp             HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-H
T ss_pred             HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-C-CCeEEEEECCH
Confidence            3445566666666 89999999999999999865543 1 46999999874

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=92.12  E-value=0.2  Score=35.92  Aligned_cols=36  Identities=11%  Similarity=0.013  Sum_probs=25.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|.+|+|||||.-=.++-+....+ +..++++|+|.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~  139 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDS  139 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBH
T ss_pred             CCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCH
Confidence            3589999999999888886664433 78999999984

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=92.01  E-value=0.32  Score=34.10  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=31.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+..+|||+|+..|-=+-...+..+++|.|.+||+-
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            457899999999998888888888779999999974

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=91.96  E-value=0.21  Score=34.90  Aligned_cols=48  Identities=19%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHh-------cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL-------INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~-------~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+-+++..|...       .++.+|||+|||-|-.-..|++.== .++++++|.++
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~  101 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSE  101 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCH
Confidence            444555555432       3466999999999998888886421 36788888764

>KOG2730 consensus Methylase [General function prediction only]

Probab=91.71  E-value=0.26  Score=35.24  Aligned_cols=50  Identities=12%  Similarity=0.022  Sum_probs=38.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+....+-.......++..|++.=||.|..++.+|..   ...|++||+||
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDP  126 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDP  126 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccH
Confidence            334444444445445559999999999999999999986   45799999987

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.43  E-value=0.32  Score=35.16  Aligned_cols=50  Identities=12%  Similarity=0.230  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHh----cCCCeEEEEccccc--HHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL----INAKNTMEIGVYTG--YSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~----~~~~~vLEiGt~~G--~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...-.||...++.    .+-+++||||||.=  -.+-.+|+...++++|+-+|+||
T Consensus        50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP  105 (267)
T PF04672_consen   50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP  105 (267)
T ss_dssp             HHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH
T ss_pred             HHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc
Confidence            3455566655554    36779999999853  24667777777799999999986

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=91.34  E-value=0.51  Score=34.14  Aligned_cols=33  Identities=15%  Similarity=0.082  Sum_probs=28.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..++||||.|-|-.|..|+....   +|++-|.++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~  126 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASP  126 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCH
Confidence            677899999999999999998765   488888763

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=91.25  E-value=0.48  Score=34.94  Aligned_cols=50  Identities=14%  Similarity=0.043  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHH----Hhc-CCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecCC
Q 044836           40 PDEAQFLSMLL----KLI-NAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~----~~~-~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~~   89 (90)
                      ..+-.+|+.-.    +.. .+..++|+|||.|.-+..|.+++.+   ..+.+.+|++.
T Consensus        57 r~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~  114 (319)
T TIGR03439        57 NDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR  114 (319)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence            44555666433    333 4458999999999999998888853   36799999974

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=90.65  E-value=0.89  Score=34.56  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~   89 (90)
                      .+....++++||++=|.||..+++.|.+   ++ +||+||.+.
T Consensus       211 ~l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~  250 (393)
T COG1092         211 ALGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSK  250 (393)
T ss_pred             HHhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccH
Confidence            4455567999999999999999998886   55 999999874

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=90.49  E-value=0.19  Score=36.53  Aligned_cols=39  Identities=10%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+..+||=+|.++|.+-...+..++++|-|+++|.++
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~  191 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH  191 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence            567889999999999999999999999999999999875

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=90.17  E-value=0.58  Score=34.51  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=27.7

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+....||---|.|.-+..+.+.+++ ++|+++|.|+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~   54 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDP   54 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-H
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCH
Confidence            556678999999999999999999995 9999999986

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.13  E-value=0.6  Score=35.81  Aligned_cols=51  Identities=18%  Similarity=0.027  Sum_probs=38.4

Q ss_pred             ccCCHHHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+.+.+-|...+.    ..+..+++|+=||.|..++.+|..   ..+|+++|+++
T Consensus       271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~  325 (432)
T COG2265         271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISP  325 (432)
T ss_pred             eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCH
Confidence            3455666665554443    345679999999999999999954   67999999875

>PRK10742 putative methyltransferase; Provisional

Probab=89.42  E-value=0.78  Score=32.93  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             HHhcCCC--eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAK--NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~--~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.+..  +|||.-.|+|--++.+|+.   +++|+.+|.++
T Consensus        82 vglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p  120 (250)
T PRK10742         82 VGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNP  120 (250)
T ss_pred             hCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCH
Confidence            4445555  8999999999999999987   68899999886

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=89.33  E-value=1.4  Score=28.54  Aligned_cols=43  Identities=16%  Similarity=0.083  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |-..+++..+..+|+|||-|.=...+...+..  +..|+++|+++
T Consensus         4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~   46 (127)
T PF03686_consen    4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINP   46 (127)
T ss_dssp             HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-
T ss_pred             HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECcc
Confidence            44566777888899999988765444333332  47899999986

; PDB: 2K4M_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.38  E-value=1.3  Score=31.31  Aligned_cols=43  Identities=14%  Similarity=0.096  Sum_probs=33.7

Q ss_pred             HHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |..+++. .+..++.||||--+|.+.++.+..+ ...+++.|+++
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~   50 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVP   50 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeeccc
Confidence            3334443 3455699999999999999999887 78899999875

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=88.24  E-value=0.96  Score=30.32  Aligned_cols=52  Identities=17%  Similarity=0.006  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC--------EEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG--------KVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~--------~v~~ie~~~   89 (90)
                      ..|..+..|-.++...+...+||-=||+|...+-.|....+-.        ++++.|+++
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~   71 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP   71 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH
Confidence            4577888888888888889999999999998866665544222        489999874

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=87.54  E-value=1.2  Score=33.38  Aligned_cols=51  Identities=14%  Similarity=0.040  Sum_probs=41.7

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+|..++.+-+|++..++..|||==||||...+-..  +- +++++++|++.
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag--l~-G~~viG~Did~  229 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG--LM-GARVIGSDIDE  229 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh--hc-CceEeecchHH
Confidence            36679999999999999999999999998886544433  33 78999999863

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=86.81  E-value=0.81  Score=33.22  Aligned_cols=36  Identities=14%  Similarity=0.059  Sum_probs=21.8

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|++|+=||+| .-.++++|++....+..|+.+|+|+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~  156 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP  156 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSH
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH
Confidence            36799999999 6889999997655478999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.64  E-value=1.4  Score=33.23  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++......+.+..+||-|.. .|..++.+...-|  .+|++||.||
T Consensus        24 p~vD~~aL~i~~~d~vl~ItS-aG~N~L~yL~~~P--~~I~aVDlNp   67 (380)
T PF11899_consen   24 PRVDMEALNIGPDDRVLTITS-AGCNALDYLLAGP--KRIHAVDLNP   67 (380)
T ss_pred             cHHHHHHhCCCCCCeEEEEcc-CCchHHHHHhcCC--ceEEEEeCCH
Confidence            345556677888889999954 5778888866544  8999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.55  E-value=2.2  Score=27.60  Aligned_cols=42  Identities=14%  Similarity=0.044  Sum_probs=28.8

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      +-..+++..++.+|+|||-|-=   ...|+.+.+ +..|+++|+++
T Consensus         4 ~a~~iAre~~~gkVvEVGiG~~---~~VA~~L~e~g~dv~atDI~~   46 (129)
T COG1255           4 VAEYIARENARGKVVEVGIGFF---LDVAKRLAERGFDVLATDINE   46 (129)
T ss_pred             HHHHHHHHhcCCcEEEEccchH---HHHHHHHHHcCCcEEEEeccc
Confidence            3445677888999999997532   233444443 46899999885

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=85.56  E-value=0.86  Score=33.48  Aligned_cols=33  Identities=6%  Similarity=-0.026  Sum_probs=19.9

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -++||||||..+.=-.|+.... +=++++.|+|+
T Consensus       104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~  136 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDP  136 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH---EEEEEES-H
T ss_pred             eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCH
Confidence            4799999987755334444444 67999999875

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=85.42  E-value=4.8  Score=26.73  Aligned_cols=48  Identities=23%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHH--HHHhhCCCCCEEEEEe
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLL--VTALAIPDDGKVQWMN   86 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal--~la~~~~~~~~v~~ie   86 (90)
                      ..++++.++|...++  ..+.++-+| +|+|=+|+  .++..++++.+++++|
T Consensus         9 ~~~~~~~~~l~~~v~--~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie   59 (186)
T cd01130           9 TFSPLQAAYLWLAVE--ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE   59 (186)
T ss_pred             CCCHHHHHHHHHHHh--CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence            346888889988665  467888888 89998886  4455566666777775

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=85.12  E-value=2.7  Score=30.90  Aligned_cols=39  Identities=13%  Similarity=0.050  Sum_probs=30.8

Q ss_pred             HHHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836           49 LLKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        49 l~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +.+..+..+||.+|+|. |..++.+|++.+ ..++++++.+
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~  218 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRV  218 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence            34456778999999988 889999999986 3568888765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=84.84  E-value=3.2  Score=30.23  Aligned_cols=40  Identities=18%  Similarity=0.162  Sum_probs=29.6

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+..+.++||++=|.||..+++.+.+ + ..+|+++|.+.
T Consensus       117 ~v~~~~~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~  156 (286)
T PF10672_consen  117 WVRKYAKGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSK  156 (286)
T ss_dssp             HHHHHCTTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-H
T ss_pred             HHHHHcCCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCH
Confidence            4445578899999999999999987653 2 34899999863

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=84.59  E-value=1.8  Score=31.86  Aligned_cols=36  Identities=11%  Similarity=0.057  Sum_probs=30.2

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ++.+|+-+|+| .|..++.+|+..+ ..+|+.+|.+++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~  204 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPE  204 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHH
Confidence            34489999998 4888899999988 789999998763

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=84.46  E-value=3.3  Score=29.91  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=26.2

Q ss_pred             CCCeEEEEcccccH---H-HHHHHhhCCC----CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGY---S-LLVTALAIPD----DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~---s-al~la~~~~~----~~~v~~ie~~~   89 (90)
                      ++-+|.-+||+||=   | |+.+.+.++.    .-+|++.|+|.
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~  139 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL  139 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH
Confidence            37799999999994   3 3444455542    57999999984

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=84.32  E-value=1  Score=30.86  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=23.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC--------CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPD--------DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~--------~~~v~~ie~~~   89 (90)
                      ++-+|.-.||++|--+-.||..+.+        .-+|++.|+|+
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~   74 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP   74 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH
Confidence            5669999999999655444443332        35999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2811 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.71  E-value=3.2  Score=31.70  Aligned_cols=43  Identities=16%  Similarity=0.093  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHh---cCC-CeEEEEcccccHHHHHHHhhCCCCCEEEE
Q 044836           41 DEAQFLSMLLKL---INA-KNTMEIGVYTGYSLLVTALAIPDDGKVQW   84 (90)
Q Consensus        41 ~~~~ll~~l~~~---~~~-~~vLEiGt~~G~sal~la~~~~~~~~v~~   84 (90)
                      .+..+|..+-..   .++ ..++|.|+|-|..+-|++..++ .+.++-
T Consensus       165 QqsSllg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l  211 (420)
T KOG2811|consen  165 QQSSLLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQ-IQNVYL  211 (420)
T ss_pred             HHHHHHhHHHhccccCCCcceEEEecCCchHHHHHHHHHhc-cccEEE
Confidence            355566665543   233 6899999999999999999999 555554

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=83.56  E-value=1.7  Score=30.99  Aligned_cols=57  Identities=12%  Similarity=0.183  Sum_probs=31.6

Q ss_pred             CCCcc---ccCCHHHHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhC---C-CCCEEEEEec
Q 044836           31 HPQNF---MFSAPDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAI---P-DDGKVQWMNT   87 (90)
Q Consensus        31 ~~~p~---m~~~~~~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~---~-~~~~v~~ie~   87 (90)
                      ..||.   -.++...-.-|+.+++..    -|--|+|.|+.-|.|++.++..+   . .+-+|+.+|.
T Consensus        44 ~~wp~~~~tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDS  111 (248)
T PF05711_consen   44 RDWPSVAHTMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDS  111 (248)
T ss_dssp             -S-BSS-S-SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-
T ss_pred             ccCCCccccccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            45663   134555555555555532    47799999999999998776543   2 2457998884

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.44  E-value=0.33  Score=33.29  Aligned_cols=49  Identities=29%  Similarity=0.446  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHH---hcCCCeEEEEcc-cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLK---LINAKNTMEIGV-YTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~---~~~~~~vLEiGt-~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |....+-....+   ..++++|||+|. ++|.+++++|...| ...|+--|-|+
T Consensus        12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne   64 (201)
T KOG3201|consen   12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNE   64 (201)
T ss_pred             ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCH
Confidence            434444444443   357889999995 58999999999988 56777666553

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=83.36  E-value=13  Score=26.98  Aligned_cols=51  Identities=12%  Similarity=0.008  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhC----CC---CCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAI----PD---DGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~----~~---~~~v~~ie~~~   89 (90)
                      .+.+-..|...++. .++-+|.-.||+||--+-.||..+    +.   +-+|++.|+|+
T Consensus        99 d~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~  157 (287)
T PRK10611         99 EAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT  157 (287)
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH
Confidence            34444555544332 234599999999996554444433    21   35899999985

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=82.85  E-value=3.3  Score=33.72  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhCCCccccCCHHHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           21 LKELRELTEKHPQNFMFSAPDEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        21 l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +....+.|++.|+-    +...-.||+.-.+   +.+++.|||+||..|.=--..++.+|-++.|+++|+-|
T Consensus        12 ~Dk~Y~lAke~Gyr----sRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   12 LDKYYRLAKELGYR----SRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             chHHHHHHHHhchh----HHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            34555667776653    2444556654333   45889999999999998888888899889999999865

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=82.53  E-value=1.3  Score=32.29  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHh------cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           42 EAQFLSMLLKL------INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        42 ~~~ll~~l~~~------~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      ...++..+...      ...|+|||+|||+|.-.+.....-  ...+...|.|
T Consensus        98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~n  148 (282)
T KOG2920|consen   98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFN  148 (282)
T ss_pred             HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecc
Confidence            34455555522      478999999999999888776542  2456665554

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=82.20  E-value=0.92  Score=34.42  Aligned_cols=21  Identities=10%  Similarity=0.143  Sum_probs=17.2

Q ss_pred             CCCeEEEEcccccHHHHHHHh
Q 044836           54 NAKNTMEIGVYTGYSLLVTAL   74 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~   74 (90)
                      ++-+|+|+||++|..|+.+.+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs   83 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIID   83 (386)
T ss_pred             cceeEEEecCCCCccHHHHHH
Confidence            456999999999998877644

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=82.18  E-value=1.3  Score=34.21  Aligned_cols=37  Identities=11%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..||||..+.-|.-|.++|.-|.+.|.|++.|.|.
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~  276 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNE  276 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccch
Confidence            3566999999999999999999999999999999764

>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps

Probab=82.08  E-value=7.3  Score=28.61  Aligned_cols=51  Identities=12%  Similarity=0.075  Sum_probs=43.7

Q ss_pred             cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEE
Q 044836           35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWM   85 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~i   85 (90)
                      ++....++-.++-.++......++|-+=+..|..+.++++.|+..|.|+.+
T Consensus       182 i~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~  232 (299)
T PF04189_consen  182 IMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITL  232 (299)
T ss_pred             HhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEE
Confidence            445667777777777888899999999999999999999999988888776

This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=81.78  E-value=2.5  Score=33.15  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=30.3

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|+-+|+| .|..++..|++++  ++|+.+|.++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~  198 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRP  198 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            468999999998 5889999999987  4899999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=81.44  E-value=2.9  Score=27.49  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=27.6

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      ...+|.+|+-+|.| .|..|+.++.+++  .+++.+|.+
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~   52 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDER   52 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESS
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCC
Confidence            34678999999988 5888999999986  789998865

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=81.18  E-value=2.4  Score=24.20  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             eEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY   90 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~   90 (90)
                      +|+-||.  |+.++-+|..+.. +.+|+-++.+++
T Consensus         1 ~vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGG--GFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESS--SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECc--CHHHHHHHHHHHHhCcEEEEEeccch
Confidence            4566665  7888888887765 468988887653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=80.98  E-value=3.4  Score=26.26  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=22.3

Q ss_pred             HHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhh
Q 044836           43 AQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALA   75 (90)
Q Consensus        43 ~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~   75 (90)
                      +++|..|-+..    ++...+|||||-|...-.|.+.
T Consensus        43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E   79 (112)
T PF07757_consen   43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE   79 (112)
T ss_pred             HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC
Confidence            44444444332    4568999999999987777653

; GO: 0008168 methyltransferase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		2e-32
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		1e-24
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		5e-13
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		6e-11
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		6e-11
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		7e-10
3cbg_A	232	Functional And Structural Characterization Of A Cat		8e-10
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		6e-05

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 72/83 (86%)
Query: 6   QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
           QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 31  QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 90
Query: 66  GYSLLVTALAIPDDGKVQWMNTN 88
           GYSLL TALAIP+DGK+  M+ N
Sbjct: 91  GYSLLATALAIPEDGKILAMDIN 113

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 65/83 (78%)
Query: 4   ISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGV 63
           + QYIL T+VYPRE   LKELRE  E HP ++M ++P   Q +S +LKL+NAK T+E+GV
Sbjct: 20  LCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGV 79
Query: 64  YTGYSLLVTALAIPDDGKVQWMN 86
           +TGYSLL+TAL+IPDDGK+  ++
Sbjct: 80  FTGYSLLLTALSIPDDGKITAID 102

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 6  QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
          +Y+L+ ++  REH  L  LR+ T       M  AP++AQF+ ML++L  AK  +E+G +T
Sbjct: 14 KYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFT 71
Query: 66 GYSLLVTALAIPDDGKV 82
          GYS L  +LA+PDDG+V
Sbjct: 72 GYSALAMSLALPDDGQV 88

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
          ++ +YI   +V  RE +   +LR+ T    Q  M  +P+E QFL++L K+  AK  +EIG
Sbjct: 11 SLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIG 68
Query: 63 VYTGYSLLVTALAIPDDGKV-------QWMN 86
           +TGYS L  A A+P+DGK+       +W N
Sbjct: 69 TFTGYSSLCFASALPEDGKILCCDVSEEWTN 99

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 6  QYILETTVYPREHECLKELRELTEKHPQNFMF-SAPDEAQFLSMLLKLINAKNTMEIGVY 64
          QY+L+ ++  RE   L ELRE T +    +   +AP++AQ L++L+KL  AK  ++IG +
Sbjct: 17 QYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVIDIGTF 74
Query: 65 TGYSLLVTALAIPDDG 80
          TGYS +   LA+P DG
Sbjct: 75 TGYSAIAXGLALPKDG 90

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 6  QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
          QY+L  ++  REH  L+ LR LT + PQ       ++AQ L+ L +LI AK  +++G +T
Sbjct: 23 QYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT 80
Query: 66 GYSLLVTALAIPDDGKV 82
          GYS L  ALA+P DG+V
Sbjct: 81 GYSALALALALPADGRV 97

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 21  LKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG 80
           L +LR  T   P   M  +P++AQFL +L+ L  AK  +EIGV+ GYS L  AL +P DG
Sbjct: 39  LAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDG 98
Query: 81  KV 82
           ++
Sbjct: 99  QI 100

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKV 82
          A ++ QFL++L++L  AK  +EIG   GYS +  A  +P DG++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQL 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	1e-38
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	8e-38
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-33
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	2e-33
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	4e-33
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	8e-33
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	8e-33
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	1e-32
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	4e-32
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	1e-28
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	2e-28
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	4e-28
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	1e-26
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	8e-23
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-05

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  127 bits (322), Expect = 1e-38
 Identities = 61/80 (76%), Positives = 70/80 (87%)

Query: 3   NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
            + QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIG
Sbjct: 28  ALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIG 87

Query: 63  VYTGYSLLVTALAIPDDGKV 82
           VYTGYSLL TALAIP+DGK+
Sbjct: 88  VYTGYSLLATALAIPEDGKI 107

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  125 bits (316), Expect = 8e-38
 Identities = 48/80 (60%), Positives = 63/80 (78%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           + QYIL T+VYPRE   LKELRE  E HP ++M ++P   Q +S +LKL+NAK T+E+G
Sbjct: 19 ELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVG 78

Query: 63 VYTGYSLLVTALAIPDDGKV 82
          V+TGYSLL+TAL+IPDDGK+
Sbjct: 79 VFTGYSLLLTALSIPDDGKI 98

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  114 bits (288), Expect = 1e-33
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
          ++ +YI   +V  RE +   +LR+ T    Q  M  +P+E QFL++L K+  AK  +EIG
Sbjct: 11 SLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIG 68

Query: 63 VYTGYSLLVTALAIPDDGKV 82
           +TGYS L  A A+P+DGK+
Sbjct: 69 TFTGYSSLCFASALPEDGKI 88

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  113 bits (286), Expect = 2e-33
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 3   NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           ++  Y+    +   +   L +LR  T   P   M  +P++AQFL +L+ L  AK  +EIG
Sbjct: 23  SLYSYLQS--ISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIG 80

Query: 63  VYTGYSLLVTALAIPDDGKV 82
           V+ GYS L  AL +P DG++
Sbjct: 81  VFRGYSALAMALQLPPDGQI 100

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  112 bits (283), Expect = 4e-33
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           + QY+L  ++  REH  L+ LR LT + PQ       ++AQ L+ L +LI AK  +++G
Sbjct: 20 RLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLG 77

Query: 63 VYTGYSLLVTALAIPDDGKV 82
           +TGYS L  ALA+P DG+V
Sbjct: 78 TFTGYSALALALALPADGRV 97

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  112 bits (282), Expect = 8e-33
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           + QY+ +  +   +   L+E+ ++           +P + +FL +L+++  A+N +EIG
Sbjct: 9  AVDQYVSDVLI--PKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIG 66

Query: 63 VYTGYSLLVTALAIPDDGKV 82
             GYS +  A  +   G+V
Sbjct: 67 TLGGYSTIWLARGLSSGGRV 86

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  112 bits (283), Expect = 8e-33
 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           + +Y+L+ ++  REH  L  LR+ T       M  AP++AQF+ ML++L  AK  +E+G
Sbjct: 11 ELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELG 68

Query: 63 VYTGYSLLVTALAIPDDGKV 82
           +TGYS L  +LA+PDDG+V
Sbjct: 69 TFTGYSALAMSLALPDDGQV 88

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  112 bits (282), Expect = 1e-32
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 4  ISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGV 63
          +  Y+++  +       L  + E   +        A ++ QFL++L++L  AK  +EIG 
Sbjct: 15 VDNYLIKALI--PGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGT 72

Query: 64 YTGYSLLVTALAIPDDGKV 82
            GYS +  A  +P DG++
Sbjct: 73 LGGYSTIWMARELPADGQL 91

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  110 bits (277), Expect = 4e-32
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKH-PQNFMFSAPDEAQFLSMLLKLINAKNTMEI 61
           + QY+L+ ++  RE   L ELRE T +      M +AP++AQ L++L+KL+ AK  ++I
Sbjct: 14 ELYQYLLQVSL--REPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDI 71

Query: 62 GVYTGYSLLVTALAIPDDGKV 82
          G +TGYS +   LA+P DG +
Sbjct: 72 GTFTGYSAIAMGLALPKDGTL 92

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  101 bits (253), Expect = 1e-28
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           I  Y+    + P     +  + ++  +   N         + L +L ++   +  +  G
Sbjct: 9  RIGAYLDG--LLPEADPVVAAMEQIARER--NIPIVDRQTGRLLYLLARIKQPQLVVVPG 64

Query: 63 VYTGYSLLVTALAIPDDGKV 82
             G +    A AI    +V
Sbjct: 65 DGLGCASWWFARAISISSRV 84

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  101 bits (253), Expect = 2e-28
 Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           I +Y+ +    P + + + E  +      +  M     + Q +  +++  +    +E+G
Sbjct: 8  RILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELG 66

Query: 63 VYTGYSLLVTALAIPDDGKV 82
           Y GYS +  A  +    ++
Sbjct: 67 AYCGYSAVRMARLLQPGARL 86

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  100 bits (251), Expect = 4e-28
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
             +Y+++  ++  ++  ++ LRE  E +              +  L+++ N KN +EIG
Sbjct: 24 LNKKYLID--LHQHQNSSIEVLREFAEVN--EVPIVDRLTLDLIKQLIRMNNVKNILEIG 79

Query: 63 VYTGYSLLVTALAIPDDGKV 82
             GYS +  A +I DD  V
Sbjct: 80 TAIGYSSMQFA-SISDDIHV 98

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           +  Y+ +    P   + ++++     +             + L  LLK+      +EIG
Sbjct: 7  RLKHYLEKQI--PARDQYIEQMEREAHEQ--QVPIMDLLGMESLLHLLKMAAPARILEIG 62

Query: 63 VYTGYSLLVTALAIPDDGKV 82
             GYS +  A A+P +  +
Sbjct: 63 TAIGYSAIRMAQALP-EATI 81

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 86.2 bits (214), Expect = 8e-23
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 6/86 (6%)

Query: 1  MINISQYILE-TTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLIN---AK 56
          M N  +Y+             +   RE   +             Q L+ L    N   + 
Sbjct: 1  MSNAFEYLRTYVESTTETDAAVARAREDAAEFGL--PAPDEMTGQLLTTLAATTNGNGST 58

Query: 57 NTMEIGVYTGYSLLVTALAIPDDGKV 82
            + I    G   L     + D+  +
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTL 84

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.0 bits (87), Expect = 7e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 14/44 (31%)

Query: 17 EHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTME 60
          E + LK+L + + K     ++ A D A  L+     I A  TME
Sbjct: 18 EKQALKKL-QASLK-----LY-ADDSAPALA-----IKA--TME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.83
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.82
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.79
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.77
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.77
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.76
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.72
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.72
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.71
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.71
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.7
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.7
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.61
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.3
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.13
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.75
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.74
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.73
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.71
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.7
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.64
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.64
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.63
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.59
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.58
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.58
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.58
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.56
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.51
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.51
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.51
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.51
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.51
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.5
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.5
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.5
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.5
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.49
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.49
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.49
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.49
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.47
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.47
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.46
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.46
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.46
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.45
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.45
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.44
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.44
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.44
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.44
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.43
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.42
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.42
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.41
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.41
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.41
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.4
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.4
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.4
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.38
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.38
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.38
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.38
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.37
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.37
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.37
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.37
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.36
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.36
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.36
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.36
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.35
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.34
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.33
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.33
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.33
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.33
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.33
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.33
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.33
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.32
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.32
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.32
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.32
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.32
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.32
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.31
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.31
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.31
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.3
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.3
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.29
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.28
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.28
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.28
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.27
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.26
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.26
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.26
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.26
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.25
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.25
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.25
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.25
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.25
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.24
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.23
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.23
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.23
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.23
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.23
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.22
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.22
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.22
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.22
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.21
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.21
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.21
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.21
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.2
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.2
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.2
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.19
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.19
2o07_A	304	Spermidine synthase; structural genomics, structur	98.19
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.18
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.17
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.17
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.16
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.16
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.16
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.15
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.15
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.15
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.15
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.15
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.15
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.15
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.14
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.14
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.14
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.14
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.13
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.13
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.13
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.13
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.13
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.12
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.12
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.12
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.12
3ocj_A	305	Putative exported protein; structural genomics, PS	98.11
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.1
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.09
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.08
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.08
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.08
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.08
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.08
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.07
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.07
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.07
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.07
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.07
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.06
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.06
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.05
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.04
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.04
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.03
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.03
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.03
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.02
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.01
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.01
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.01
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.0
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.99
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.99
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.99
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.98
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.97
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.96
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.96
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.96
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	97.96
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.94
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.94
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.93
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.92
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.92
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.91
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.91
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.9
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.9
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.9
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.89
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.89
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.88
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.87
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.87
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.85
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.85
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.84
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.83
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.82
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.8
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.79
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.79
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.79
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.78
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.74
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.73
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.71
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.7
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.7
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.69
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.68
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.67
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.67
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.67
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.67
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.67
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.66
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.66
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.65
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.64
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.64
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.61
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.6
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.6
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.59
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.57
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.57
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.57
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.57
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.56
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.54
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.54
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.54
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.53
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.52
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.52
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.49
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.49
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.49
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.47
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.47
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.45
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.44
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.43
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.4
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.36
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.35
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.09
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.09
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.02
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.91
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.84
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.79
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	96.67
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.38
3lkd_A	542	Type I restriction-modification system methyltrans	96.24
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.24
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.22
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.04
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	95.99
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.96
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	95.83
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.76
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.74
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.68
3khk_A	544	Type I restriction-modification system methylation	95.5
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.11
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	94.64
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.62
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	93.73
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.49
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.37
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.36
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.36
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.27
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	91.85
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	91.68
3ufb_A	530	Type I restriction-modification system methyltran	91.64
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	91.43
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	91.32
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	91.15
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	90.51
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.4
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.97
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	87.94
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	87.93
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	87.77
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	87.54
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	87.1
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	86.72
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	86.56
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	85.91
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	85.81
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	85.56
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	85.49
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.25
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	85.07
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	84.44
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	84.39
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	84.35
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	84.28
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	84.04
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	84.02
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	84.02
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	83.92
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	83.36
3gms_A	340	Putative NADPH:quinone reductase; structural genom	82.58
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	82.51
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	82.18
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.16
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	81.99
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	81.92
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	81.79
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	81.79
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	81.74
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	81.52
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	81.5
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	80.88
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	80.68
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	80.55
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.29
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	80.05

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.83  E-value=5.3e-20  Score=127.40  Aligned_cols=88  Identities=72%  Similarity=1.036  Sum_probs=82.2

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++++|+.+++.+|++++.++++++++.++++|.|.+++.+++++..+++..++++|||||||+|++++++|++++++++
T Consensus        27 ~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~  106 (247)
T 1sui_A           27 DALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK  106 (247)
T ss_dssp             HHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCE
Confidence            57899999987557889999999999999999999999999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus       107 v~~iD~s~  114 (247)
T 1sui_A          107 ILAMDINK  114 (247)
T ss_dssp             EEEEESCC
T ss_pred             EEEEECCH
Confidence            99999986

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.82  E-value=9.9e-20  Score=124.96  Aligned_cols=88  Identities=55%  Similarity=0.907  Sum_probs=81.8

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+++|+.+++.++++++.++++++++.++++|.+.+++.++++|..+++..++++|||||||+|++++++|+++|++++
T Consensus        18 ~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~   97 (237)
T 3c3y_A           18 EELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGK   97 (237)
T ss_dssp             HHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCE
Confidence            57899999987546789999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        98 v~~iD~~~  105 (237)
T 3c3y_A           98 ITAIDFDR  105 (237)
T ss_dssp             EEEEESCH
T ss_pred             EEEEECCH
Confidence            99999985

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.79  E-value=6.1e-19  Score=121.72  Aligned_cols=86  Identities=41%  Similarity=0.656  Sum_probs=80.1

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++++|+.++.  +++++.++++++.+.+.++|.|.+++.++++|..+++..++++|||||||+|++++++|++++++++
T Consensus        10 ~~~~~Y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~   87 (242)
T 3r3h_A           10 PELYKYLLDIS--LREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQ   87 (242)
T ss_dssp             HHHHHHHHHHH--CCCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCE
T ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCE
Confidence            47899999988  4788999999999988888888999999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        88 v~~iD~~~   95 (242)
T 3r3h_A           88 VITCDINE   95 (242)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCH
Confidence            99999986

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.77  E-value=2.3e-18  Score=117.54  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=75.8

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCC---eEEEEcccccHHHHHHHhhCCC
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAK---NTMEIGVYTGYSLLVTALAIPD   78 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~---~vLEiGt~~G~sal~la~~~~~   78 (90)
                      +++.+|+.++.   ++++.++++++++.+.++|.  ++|.++++|..+++..+++   +|||||||+|++++++|+++++
T Consensus         6 ~~~~~y~~~~~---~~~~~l~~~~~~a~~~~~p~--i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~   80 (221)
T 3dr5_A            6 EYLRTYVESTT---ETDAAVARAREDAAEFGLPA--PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLAD   80 (221)
T ss_dssp             HHHHHHHHTTS---CCCHHHHHHHHHHHHTTCCC--CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHcC---CCCHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCC
Confidence            56889999754   57999999999999999994  5799999999999999999   9999999999999999999988


Q ss_pred             CCEEEEEecCC
Q 044836           79 DGKVQWMNTNL   89 (90)
Q Consensus        79 ~~~v~~ie~~~   89 (90)
                      +++|+++|+++
T Consensus        81 ~~~v~~vD~~~   91 (221)
T 3dr5_A           81 NTTLTCIDPES   91 (221)
T ss_dssp             TSEEEEECSCH
T ss_pred             CCEEEEEECCH
Confidence            89999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.77  E-value=3.5e-18  Score=114.83  Aligned_cols=87  Identities=22%  Similarity=0.381  Sum_probs=80.7

Q ss_pred             ChhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC
Q 044836            1 MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG   80 (90)
Q Consensus         1 ~~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~   80 (90)
                      ++.+.+|+.++.  ++.++.++++++.+.+.++|.|.+++.+++++..+++..++++|||||||+|++++++|+.+++++
T Consensus         7 ~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (223)
T 3duw_A            7 WTAVDQYVSDVL--IPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG   84 (223)
T ss_dssp             HHHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCC
Confidence            357889999887  578899999999999999999989999999999999999999999999999999999999998789


Q ss_pred             EEEEEecCC
Q 044836           81 KVQWMNTNL   89 (90)
Q Consensus        81 ~v~~ie~~~   89 (90)
                      +|+++|+++
T Consensus        85 ~v~~vD~~~   93 (223)
T 3duw_A           85 RVVTLEASE   93 (223)
T ss_dssp             EEEEEESCH
T ss_pred             EEEEEECCH
Confidence            999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.76  E-value=4.5e-18  Score=116.10  Aligned_cols=86  Identities=34%  Similarity=0.558  Sum_probs=80.0

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+++|+.+++  +++++.+.++++.+.++++|.|.+++.+++++..+++..++++|||||||+|++++++++.++++++
T Consensus        22 ~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   99 (232)
T 3cbg_A           22 PSLYSYLQSIS--ADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQ   99 (232)
T ss_dssp             HHHHHHHHHTS--CCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCE
Confidence            57899999877  4788999999999999999999999999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus       100 v~~iD~~~  107 (232)
T 3cbg_A          100 IIACDQDP  107 (232)
T ss_dssp             EEEEESCH
T ss_pred             EEEEECCH
Confidence            99999985

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.72  E-value=8.2e-17  Score=107.55  Aligned_cols=84  Identities=13%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+++|+.++.  +.+++.++++++++.++++|  .+.+.+++++..+++..++++|||||||+|++++++++.++++++
T Consensus         8 ~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   83 (210)
T 3c3p_A            8 SRIGAYLDGLL--PEADPVVAAMEQIARERNIP--IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSR   83 (210)
T ss_dssp             HHHHHHHHHTS--CSCCHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHHcCCC--CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCE
Confidence            57899999877  57889999999999999988  567999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        84 v~~vD~~~   91 (210)
T 3c3p_A           84 VVMIDPDR   91 (210)
T ss_dssp             EEEEESCH
T ss_pred             EEEEECCH
Confidence            99999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.72  E-value=1.3e-16  Score=107.36  Aligned_cols=86  Identities=40%  Similarity=0.616  Sum_probs=78.6

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+.+|+.++.  +++++.++++++.+.+++++.+.+++.+++++..+++..++++|||||||+|++++++++.++++++
T Consensus        19 ~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   96 (229)
T 2avd_A           19 SRLWQYLLSRS--MREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR   96 (229)
T ss_dssp             SHHHHHHHHTT--CCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCE
Confidence            57889999877  4678999999999998777778899999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        97 v~~vD~~~  104 (229)
T 2avd_A           97 VVTCEVDA  104 (229)
T ss_dssp             EEEEESCS
T ss_pred             EEEEECCH
Confidence            99999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.71  E-value=1.1e-16  Score=107.49  Aligned_cols=86  Identities=38%  Similarity=0.624  Sum_probs=79.3

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHH-hCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC
Q 044836            2 INISQYILETTVYPREHECLKELRELTE-KHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG   80 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~-~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~   80 (90)
                      +++.+|+.++.  +..++.+.++++++. ++++|.+.+++..++++..+++..++++|||||||+|++++++++.+++++
T Consensus        13 ~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   90 (225)
T 3tr6_A           13 PELYQYLLQVS--LREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDG   90 (225)
T ss_dssp             HHHHHHHHHTT--CCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCC
Confidence            46889999877  478899999999998 899988899999999999999999999999999999999999999998789


Q ss_pred             EEEEEecCC
Q 044836           81 KVQWMNTNL   89 (90)
Q Consensus        81 ~v~~ie~~~   89 (90)
                      +|+++|+++
T Consensus        91 ~v~~vD~~~   99 (225)
T 3tr6_A           91 TLITCDVDE   99 (225)
T ss_dssp             EEEEEESCH
T ss_pred             EEEEEeCCH
Confidence            999999975

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.71  E-value=1e-16  Score=110.37  Aligned_cols=86  Identities=24%  Similarity=0.408  Sum_probs=79.1

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+.+|+.++.  +.+++.+.++++.+.+.++|.|.+++..+++|..++...++++|||||||+|++++++|+.++++++
T Consensus        13 ~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~   90 (248)
T 3tfw_A           13 SAVDNYLIKAL--IPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQ   90 (248)
T ss_dssp             HHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHhcC--CCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCE
Confidence            35789999877  4778999999999999999998899999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        91 v~~vD~s~   98 (248)
T 3tfw_A           91 LLTLEADA   98 (248)
T ss_dssp             EEEEECCH
T ss_pred             EEEEECCH
Confidence            99999975

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.70  E-value=1e-16  Score=108.09  Aligned_cols=87  Identities=16%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++++|+.+++....+..+++.+++++.+..++ +.+++..++++..+++..++++|||||||+|++++++|+.++++++
T Consensus         7 ~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   85 (221)
T 3u81_A            7 QRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGAR   85 (221)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTCG-GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCcC-cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCE
Confidence            368999999885323446889999999887765 5788999999999999999999999999999999999999987899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        86 v~~vD~~~   93 (221)
T 3u81_A           86 LLTMEINP   93 (221)
T ss_dssp             EEEEESCH
T ss_pred             EEEEeCCh
Confidence            99999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.70  E-value=2.2e-16  Score=107.59  Aligned_cols=86  Identities=37%  Similarity=0.585  Sum_probs=76.9

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++++|+.++.  +++++.+.++++++.++++|.|.+.|.+++++..+++..++++|||||||+|++++++++.++++++
T Consensus        10 ~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~   87 (239)
T 2hnk_A           10 ESLEEYIFRNS--VREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGK   87 (239)
T ss_dssp             HHHHHHHHHTT--CCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHcc--CCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCE
Confidence            57899999877  4788999999999999999988999999999999999999999999999999999999999987789


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        88 v~~vD~~~   95 (239)
T 2hnk_A           88 ILCCDVSE   95 (239)
T ss_dssp             EEEEESCH
T ss_pred             EEEEECCH
Confidence            99999975

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=1.5e-15  Score=103.42  Aligned_cols=83  Identities=23%  Similarity=0.303  Sum_probs=74.1

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++.+|+.++.  +.+++.++++++++.+.++|.  +.+..++++..+++..++++|||||||+|++++++|+..+ +++
T Consensus        23 ~~l~~yl~~~~--~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~   97 (232)
T 3ntv_A           23 DLNKKYLIDLH--QHQNSSIEVLREFAEVNEVPI--VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIH   97 (232)
T ss_dssp             HHHHHHHHHHH--GGGCCGGGGHHHHHHHTTCCC--CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCE
T ss_pred             HHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCCC--cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCE
Confidence            46889999877  466788899999999989984  4699999999999999999999999999999999999776 899


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        98 v~~vD~~~  105 (232)
T 3ntv_A           98 VTTIERNE  105 (232)
T ss_dssp             EEEEECCH
T ss_pred             EEEEECCH
Confidence            99999975

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.61  E-value=8.5e-15  Score=99.05  Aligned_cols=83  Identities=18%  Similarity=0.313  Sum_probs=75.4

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +.+++|+.++.  +++++.+.++++++.+.++|  .+.+..++++..++...++++|||||||+|++++++++.+| +++
T Consensus         6 ~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~   80 (233)
T 2gpy_A            6 ERLKHYLEKQI--PARDQYIEQMEREAHEQQVP--IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EAT   80 (233)
T ss_dssp             HHHHHHHHTTC--CCCCHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCE
T ss_pred             HHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCC--CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCE
Confidence            56899999876  47789999999999988888  56799999999999999999999999999999999999998 799


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        81 v~~vD~~~   88 (233)
T 2gpy_A           81 IVSIERDE   88 (233)
T ss_dssp             EEEECCCH
T ss_pred             EEEEECCH
Confidence            99999975

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.30  E-value=4.5e-12  Score=86.41  Aligned_cols=54  Identities=26%  Similarity=0.281  Sum_probs=46.0

Q ss_pred             hCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           30 KHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        30 ~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....|.+.+++++++||+.  ++.++++||||||  ||||+|+|+. + +++|+|||.|+
T Consensus         8 ~~~~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~   61 (202)
T 3cvo_A            8 DQMRPELTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDR   61 (202)
T ss_dssp             -CCCCCCCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCH
T ss_pred             CCCCCCccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCH
Confidence            3456666788999999998  6679999999998  7999999994 4 79999999885

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.13  E-value=1.9e-10  Score=78.81  Aligned_cols=50  Identities=26%  Similarity=0.321  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhh---CCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALA---IPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~---~~~~~~v~~ie~~~   89 (90)
                      |+++.++..++...++++|||||||+|++++++|+.   +.++++|+++|+++
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~  119 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL  119 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh
Confidence            888999998888889999999999999999999998   45589999999986

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.75  E-value=2.9e-08  Score=64.83  Aligned_cols=52  Identities=17%  Similarity=0.341  Sum_probs=42.7

Q ss_pred             cCCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+++..++..++..    .++.+|||+|||+|..++.+++..+ +++++++|+++
T Consensus         9 ~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~   64 (215)
T 4dzr_A            9 IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSM   64 (215)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-
T ss_pred             CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCH
Confidence            4557777777766655    5678999999999999999999986 78999999986

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.74  E-value=7.2e-08  Score=64.31  Aligned_cols=74  Identities=15%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             CChHHHHHHHHHHHhCCCc--------------cccCCHHHHHH-HHHHH-HhcCCCeEEEEcccccHHHHHHHhhCC--
Q 044836           16 REHECLKELRELTEKHPQN--------------FMFSAPDEAQF-LSMLL-KLINAKNTMEIGVYTGYSLLVTALAIP--   77 (90)
Q Consensus        16 ~~~~~l~~l~~~a~~~~~p--------------~m~~~~~~~~l-l~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~--   77 (90)
                      ..+.+.+.+++..++.-+|              ...+.|..... +..+. ...+..+|||||||+|+.+..+++..+  
T Consensus        26 ~~~~v~~~~~~~~r~~f~p~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~  105 (227)
T 2pbf_A           26 DDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVL  105 (227)
T ss_dssp             CCHHHHHHHHTSCGGGTCSSSTTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHhCCHHHcCCcccCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhccc
Confidence            3566667776554433222              11234544444 34433 456778999999999999999999885  


Q ss_pred             --CCCEEEEEecCC
Q 044836           78 --DDGKVQWMNTNL   89 (90)
Q Consensus        78 --~~~~v~~ie~~~   89 (90)
                        ++++|+++|+++
T Consensus       106 ~~~~~~v~~vD~~~  119 (227)
T 2pbf_A          106 ENKNSYVIGLERVK  119 (227)
T ss_dssp             TCTTCEEEEEESCH
T ss_pred             CCCCCEEEEEeCCH
Confidence              578999999875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.73  E-value=3.5e-08  Score=66.88  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|+.++.+|...+ +++|+++|+++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~  104 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLN  104 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCH
Confidence            4678999999999999999998766 78999999985

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.71  E-value=1.2e-08  Score=72.43  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEecC
Q 044836           38 SAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIP----DDGKVQWMNTN   88 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~----~~~~v~~ie~~   88 (90)
                      +++..+.+|+.+++.    ..|++|||+||+.|+|+++||++++    ++++|+++|..
T Consensus        86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dtf  144 (282)
T 2wk1_A           86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSF  144 (282)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECS
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECC
Confidence            567889999988886    3599999999999999999999885    37899999964

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.70  E-value=8.8e-08  Score=63.08  Aligned_cols=49  Identities=24%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|.....+...+...++.+|||||||+|+.+..+++.   .++|+++|+++
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~  109 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIK  109 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCH
Confidence            35665666666566778899999999999999999998   58999999975

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.64  E-value=6.4e-08  Score=62.72  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=39.5

Q ss_pred             cCCHHHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|++..++.. +..  .++++|||||||+|..++.+++..    +|+++|+++
T Consensus         5 ~P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~   54 (170)
T 3q87_B            5 EPGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNI   54 (170)
T ss_dssp             CCCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCH
T ss_pred             CcCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCH
Confidence            456777767666 555  678899999999999999999864    999999985

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.64  E-value=6.3e-08  Score=63.75  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+....+...+...++.+|||||||+|..++.+++..| +++|+++|+++
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~   74 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNP   74 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCH
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCH
Confidence            3445544444445667788999999999999999999976 78999999985

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.63  E-value=9.8e-08  Score=62.64  Aligned_cols=35  Identities=9%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++..| +++++++|+++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~   99 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLG   99 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCH
Confidence            378999999999999999999887 78999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.59  E-value=3.4e-08  Score=68.37  Aligned_cols=38  Identities=11%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.++.+|||+|||+|+.+..+|+.++++|+|+++|+++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~  112 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP  112 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCH
Confidence            46788999999999999999999998899999999875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.59  E-value=7.4e-08  Score=63.67  Aligned_cols=52  Identities=31%  Similarity=0.325  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|.....+...+...++.+|||||||+|+.+..+++..+++++|+++|+++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~  112 (215)
T 2yxe_A           61 SAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIP  112 (215)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCH
T ss_pred             CcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH
Confidence            3455555555555667788999999999999999999985568999999875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.59  E-value=4.4e-08  Score=62.59  Aligned_cols=45  Identities=11%  Similarity=0.017  Sum_probs=36.7

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+...+...++.+|||||||+|..++.+++..+ +++|+++|+++
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~   59 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISE   59 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCH
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCH
Confidence            3333334556677999999999999999999987 78999999985

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.58  E-value=5.1e-08  Score=65.55  Aligned_cols=36  Identities=11%  Similarity=0.150  Sum_probs=33.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|+.+..+++..+ +++|+++|+++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~   91 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSA   91 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCH
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCH
Confidence            4677999999999999999999988 78999999985

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.58  E-value=1.5e-07  Score=62.40  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+.+..++...++++|||||||+|..+..+++..+ ..+++++|+++
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~   63 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSY   63 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCH
Confidence            45555666666677899999999999999999999766 68999999975

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.58  E-value=1.6e-07  Score=62.24  Aligned_cols=49  Identities=14%  Similarity=0.111  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+.+..++...++++|||||||+|..+..+++..+ ..+|+++|+++
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~   63 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSY   63 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCH
Confidence            45555666666777899999999999999999999765 68999999975

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.56  E-value=9e-08  Score=64.84  Aligned_cols=51  Identities=20%  Similarity=0.222  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.....+...+...++.+|||+|||+|..++.+++.++++++|+++|+++
T Consensus        78 ~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~  128 (255)
T 3mb5_A           78 HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE  128 (255)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCH
Confidence            355566666667778889999999999999999999966689999999975

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.51  E-value=4e-07  Score=64.52  Aligned_cols=51  Identities=16%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|.....+...+...++.+|||||||+|+.++.+++..+++++|+++|+++
T Consensus        90 ~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~  140 (336)
T 2b25_A           90 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK  140 (336)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCH
Confidence            354344444445778889999999999999999999876579999999975

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.51  E-value=2.2e-07  Score=60.64  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+++.+++ +++|+++|+++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            45679999999999999999999875 68999999986

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.51  E-value=2.4e-07  Score=61.74  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++....+...+...++.+|||||||+|+.++.+|+.   +++|+++|+++
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~   87 (204)
T 3njr_A           39 TKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRA   87 (204)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCH
Confidence            34455555555566677889999999999999999997   68999999985

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.51  E-value=2.5e-07  Score=64.22  Aligned_cols=37  Identities=14%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..++.+++.++. +.+|+++|+++
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~  106 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP  106 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCH
Confidence            46779999999999999999998864 67999999985

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.51  E-value=1.6e-07  Score=61.02  Aligned_cols=37  Identities=14%  Similarity=0.040  Sum_probs=33.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCC--------CEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDD--------GKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~--------~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..++.+++.++..        ++|+++|+++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~   65 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH   65 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence            457899999999999999999998743        8999999986

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.50  E-value=1.6e-07  Score=62.21  Aligned_cols=38  Identities=13%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||||||+|..+..+++..| +++|+++|+++
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~   61 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADK   61 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCG
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCH
Confidence            456778999999999999999999876 79999999986

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.50  E-value=1.2e-07  Score=65.37  Aligned_cols=43  Identities=7%  Similarity=-0.011  Sum_probs=35.3

Q ss_pred             HHHHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |+.+.... ++.+|+|||||+|+.++.+|+..+ .++|+++|+|+
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~   49 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVE   49 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSH
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCH
Confidence            44555554 456999999999999999999765 78999999985

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.50  E-value=1.5e-07  Score=59.23  Aligned_cols=38  Identities=11%  Similarity=0.072  Sum_probs=33.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||+|||+|..+..+++.++++++++++|+++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~   57 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence            35677999999999999999999976578999999875

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.50  E-value=2.8e-07  Score=63.62  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             cCCHHHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...|++..++..++..  .++.+|||||||+|..++.+++..+ +.+|+++|+++
T Consensus        90 ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~  143 (276)
T 2b3t_A           90 IPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMP  143 (276)
T ss_dssp             CCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSH
T ss_pred             ccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCH
Confidence            3456777777777766  4577999999999999999999887 78999999975

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.49  E-value=2e-07  Score=62.06  Aligned_cols=46  Identities=20%  Similarity=0.220  Sum_probs=36.7

Q ss_pred             HHHHHHH-HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLL-KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++..+. ...++.+|||||||+|+.+..+++.+++.++|+++|+++
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~  112 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIK  112 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCH
Confidence            3444433 245678999999999999999999876568999999875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.49  E-value=1.9e-07  Score=60.33  Aligned_cols=34  Identities=12%  Similarity=-0.023  Sum_probs=30.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|+.++.+++.   .++|+++|+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~   54 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQE   54 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCH
Confidence            46789999999999999999987   68999999985

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.49  E-value=1.7e-07  Score=63.15  Aligned_cols=50  Identities=18%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.....+..++...++.+|||||||+|+.+..+++..+  ++|+++|+++
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~  124 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIP  124 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCH
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCH
Confidence            3455555555556677888999999999999999999876  7999999875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.49  E-value=8.1e-08  Score=66.51  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..++.+|||||||+|..+..+++..|++++|+++|+++
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~   57 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE   57 (284)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence            3456789999999999999999999998668999999975

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.47  E-value=1.1e-07  Score=65.51  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=34.7

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||+|||+|+.+..+|+.++++|+|+++|+++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~  111 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSP  111 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcH
Confidence            45778999999999999999999988799999999975

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.47  E-value=1.1e-07  Score=64.58  Aligned_cols=44  Identities=11%  Similarity=0.047  Sum_probs=35.1

Q ss_pred             HHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++..+++.  .++.+|||||||+|+++.++++..+  .++++||+++
T Consensus        48 ~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~   93 (236)
T 3orh_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECND   93 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCH
T ss_pred             HHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCH
Confidence            355555554  4667999999999999999998755  5899999986

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.46  E-value=1.7e-07  Score=63.39  Aligned_cols=35  Identities=29%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+|||||||+|..++.+|+..| +..|+++|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~   68 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHS   68 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecH
Confidence            678999999999999999999987 78999999875

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.46  E-value=4.1e-07  Score=57.88  Aligned_cols=48  Identities=13%  Similarity=-0.066  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.....+...+...++.+|||+|||+|..+..+++  + ..+++++|+++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~   67 (183)
T 2yxd_A           20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLD   67 (183)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSH
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCH
Confidence            344455555555666788999999999999999998  4 78999999875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.46  E-value=4.9e-07  Score=61.96  Aligned_cols=51  Identities=18%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.....+...+...++.+|||+|||+|..++.+++.+++.++|+++|+++
T Consensus        84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~  134 (280)
T 1i9g_A           84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA  134 (280)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCH
Confidence            454444444445667788999999999999999999876679999999875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.45  E-value=3.9e-07  Score=63.90  Aligned_cols=51  Identities=20%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             cCCHHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|++..++..+...   .++.+|||||||+|..++.+++. + +.+|+++|+++
T Consensus       103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~  156 (284)
T 1nv8_A          103 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSS  156 (284)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCH
T ss_pred             ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCH
Confidence            4566777777666553   36689999999999999999999 6 89999999985

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.45  E-value=1.9e-07  Score=62.49  Aligned_cols=36  Identities=17%  Similarity=0.021  Sum_probs=32.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..++.+|+..| +.+++++|+++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~   72 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFK   72 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCH
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEech
Confidence            3577999999999999999999987 78999999975

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.44  E-value=2.8e-07  Score=65.13  Aligned_cols=49  Identities=20%  Similarity=0.218  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .....+...+...++.+|||||||+|+.++.+++..+.+++|+++|+++
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~  110 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR  110 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCH
Confidence            3344444444556788999999999999999999877568999999875

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.44  E-value=1.6e-07  Score=61.25  Aligned_cols=39  Identities=10%  Similarity=0.098  Sum_probs=34.1

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+..+|||+|||+|..++.+++.+++.++|+++|+++
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~   57 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQD   57 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCH
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            345678999999999999999999986578999999985

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.44  E-value=1.4e-07  Score=64.99  Aligned_cols=35  Identities=11%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|+.++.+|...| +++|+++|+++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~  114 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATR  114 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCH
Confidence            567999999999999999999987 78999999875

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.44  E-value=1.1e-07  Score=65.51  Aligned_cols=46  Identities=17%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+|..++...++.+|||||||+|..++.+++..+ +.+|+++|+++
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~   70 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQ   70 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSH
T ss_pred             HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCH
Confidence            55677667777788999999999999999999987 78999999975

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.43  E-value=2.5e-07  Score=61.40  Aligned_cols=36  Identities=17%  Similarity=0.043  Sum_probs=32.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..++.+|+..| +++++++|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~   75 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQK   75 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCH
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCH
Confidence            3578999999999999999999988 78999999874

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.42  E-value=1.6e-07  Score=63.26  Aligned_cols=36  Identities=14%  Similarity=0.043  Sum_probs=32.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+++..+ .++|+++|+++
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~  108 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAP  108 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCH
Confidence            4677999999999999999999988 78999999985

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.42  E-value=2e-07  Score=65.65  Aligned_cols=53  Identities=8%  Similarity=0.016  Sum_probs=41.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..++...+-+...+...+..+|||||||+|..|..+++..+. +++|+++|+|+
T Consensus        25 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~   78 (279)
T 3uzu_A           25 LVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDR   78 (279)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCH
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCH
Confidence            456665555555556667889999999999999999998654 46799999985

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.41  E-value=5.1e-07  Score=61.53  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++++|||||||+|..+..+++..+++++|+++|+++
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~   78 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIAS   78 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCc
Confidence            345778999999999999999999875578999999986

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.41  E-value=2.7e-07  Score=64.26  Aligned_cols=50  Identities=10%  Similarity=-0.027  Sum_probs=40.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++...+-+...+...+..+|||||||+|..|..+++.   .++|+++|+|+
T Consensus        12 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~   61 (255)
T 3tqs_A           12 LHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDR   61 (255)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCH
T ss_pred             ccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCH
Confidence            345665655555566677889999999999999999986   47999999985

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.41  E-value=4.4e-07  Score=61.22  Aligned_cols=50  Identities=26%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.....+...+...+..+|||+|||+|..++.+++.+++.++|+++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~  131 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARP  131 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCH
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCH
Confidence            44444444445667888999999999999999999976578999999875

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.40  E-value=5e-07  Score=60.87  Aligned_cols=48  Identities=13%  Similarity=0.086  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.....+...+...++.+|||||||+|..+..+++..  +.+++++|+++
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~   69 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSS   69 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCH
Confidence            3334344444455678899999999999999999987  46899999875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.40  E-value=2.9e-07  Score=59.08  Aligned_cols=36  Identities=8%  Similarity=0.011  Sum_probs=31.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||+|||+|..++.+++. + .++|+++|+++
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~   64 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNR   64 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCH
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCH
Confidence            457889999999999999999987 4 57999999985

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.40  E-value=5.4e-07  Score=62.11  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.....+...+...++.+|||+|||+|..++.+++.+++.++|+++|+++
T Consensus        98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~  147 (277)
T 1o54_A           98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE  147 (277)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCH
Confidence            44444554556667788999999999999999999976689999999875

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.40  E-value=5.7e-07  Score=63.95  Aligned_cols=50  Identities=16%  Similarity=0.041  Sum_probs=39.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++...+-+...+...+..+|||||||+|+.|..+++.   .++|+++|+|+
T Consensus        33 L~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~   82 (295)
T 3gru_A           33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDK   82 (295)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCG
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCH
Confidence            445655555544455667789999999999999999997   57999999986

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.38  E-value=3.6e-07  Score=63.17  Aligned_cols=43  Identities=7%  Similarity=-0.051  Sum_probs=34.9

Q ss_pred             HHHHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |+.+.... ++.+|+|||||+|+.++.+|+.-+ .++|+++|+++
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~   55 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVN   55 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSH
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCH
Confidence            44445554 456999999999999999999755 67999999985

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.38  E-value=3.7e-07  Score=63.71  Aligned_cols=36  Identities=11%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..++.+++.++ ..+|+++|+++
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~   80 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDS   80 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCH
Confidence            4688999999999999999999987 67999999985

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.38  E-value=6.5e-07  Score=61.15  Aligned_cols=47  Identities=19%  Similarity=0.051  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+.+...+...++.+|||||||+|..+..+++  + +++|+++|+++
T Consensus        20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~   66 (261)
T 3ege_A           20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSI   66 (261)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCH
Confidence            44444444445556889999999999999999997  3 78999999985

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.38  E-value=3.5e-07  Score=63.72  Aligned_cols=43  Identities=12%  Similarity=-0.005  Sum_probs=34.8

Q ss_pred             HHHHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |+.+.... ++.+|||||||+|+.++.+|+..+ .++|+++|+|+
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~   55 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVD   55 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSH
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCH
Confidence            44445544 456999999999999999999755 67999999985

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.37  E-value=1.5e-06  Score=61.03  Aligned_cols=49  Identities=12%  Similarity=0.089  Sum_probs=38.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++...+-+...+...+. +|||||||+|..|..+++.   .++|+++|+|+
T Consensus        30 L~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~   78 (271)
T 3fut_A           30 LVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDL   78 (271)
T ss_dssp             ECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCG
T ss_pred             cCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCH
Confidence            4566555554444555666 9999999999999999986   47899999986

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.37  E-value=8.7e-07  Score=57.66  Aligned_cols=35  Identities=9%  Similarity=0.085  Sum_probs=30.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||+|||+|..++.+++. + ..+|+++|+|+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~   77 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQ   77 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCH
Confidence            57889999999999999988874 3 57899999985

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.37  E-value=3.1e-07  Score=61.49  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             CHHH-HHHHHHHH-HhcCCCeEEEEcccccHHHHHHHhhCCC-----CCEEEEEecCC
Q 044836           39 APDE-AQFLSMLL-KLINAKNTMEIGVYTGYSLLVTALAIPD-----DGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~-~~ll~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~~-----~~~v~~ie~~~   89 (90)
                      .|.. ..++..+. ...+..+|||||||+|+.+..+++..+.     .++|+++|+++
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~  124 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA  124 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH
Confidence            4443 33444433 3456789999999999999999997653     37999999875

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.37  E-value=8.1e-07  Score=61.65  Aligned_cols=37  Identities=14%  Similarity=0.057  Sum_probs=33.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+++.++...+|+++|+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~   71 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA   71 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCH
Confidence            4788999999999999999999874489999999975

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.36  E-value=7.3e-07  Score=59.40  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.....+...+...++.+|||||||+|+.+..+++..   ++|+++|+++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~  102 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINE  102 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCH
Confidence            345555555555566678899999999999999999974   7999999875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.36  E-value=7.7e-07  Score=59.90  Aligned_cols=45  Identities=9%  Similarity=0.032  Sum_probs=35.5

Q ss_pred             HHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ......+++.   .++.+|||||||+|..+..+++..  +.+|+++|+++
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~   88 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICS   88 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCH
Confidence            3344444443   467799999999999999999976  57999999975

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.36  E-value=2.6e-07  Score=61.65  Aligned_cols=37  Identities=11%  Similarity=0.160  Sum_probs=33.3

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++..| +.+++++|+++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~   78 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSE   78 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCH
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCH
Confidence            34678999999999999999999987 78999999975

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.36  E-value=4.1e-07  Score=61.73  Aligned_cols=49  Identities=6%  Similarity=0.011  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhc-----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~-----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++...++..++...     ++.+|||+|||+|..++.+++..+ +++|+++|+++
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~   99 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDD   99 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCH
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCH
Confidence            56666777766543     467999999999999999998876 68999999975

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.35  E-value=5.1e-07  Score=61.76  Aligned_cols=34  Identities=24%  Similarity=0.144  Sum_probs=29.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.++|||||||+|..+..+++. + ..+|+++|+++
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~   70 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGT   70 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCH
Confidence            4679999999999999999987 3 35999999986

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.34  E-value=3.4e-07  Score=61.49  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||+|||+|..+..+++..+++++|+++|+++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~  112 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSH  112 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCH
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCH
Confidence            34577999999999999999999985578999999974

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.33  E-value=3.8e-07  Score=62.32  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=31.9

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||||||+|..++.+|+..| +..|+++|+++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~   80 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRV   80 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCH
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCH
Confidence            34667999999999999999999887 78999999974

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.33  E-value=7.2e-07  Score=61.61  Aligned_cols=48  Identities=10%  Similarity=-0.158  Sum_probs=36.2

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+++..+....++.+|||+|||+|..+.+||+.   +.+|+++|+++
T Consensus        53 ~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~  100 (252)
T 2gb4_A           53 HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISE  100 (252)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCH
T ss_pred             CHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCH
Confidence            3444444443333347789999999999999999985   56999999985

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.33  E-value=5.5e-07  Score=61.10  Aligned_cols=36  Identities=8%  Similarity=0.032  Sum_probs=31.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+|+..+ +++|+++|+++
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~   58 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVK   58 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCC
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCH
Confidence            4677999999999999999998765 78999999984

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.33  E-value=8e-07  Score=60.58  Aligned_cols=43  Identities=26%  Similarity=0.185  Sum_probs=34.5

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+....++.+|||||||+|..+..+++. + .++|+++|+++
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~   79 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLS   79 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCH
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCH
Confidence            3333333456889999999999999999998 4 67999999975

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.33  E-value=8.4e-07  Score=58.11  Aligned_cols=45  Identities=16%  Similarity=0.040  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..+....+..+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~   78 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSA   78 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCH
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCH
Confidence            3455666555667789999999999999999998   57999999875

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.33  E-value=6.2e-07  Score=66.88  Aligned_cols=39  Identities=15%  Similarity=0.053  Sum_probs=33.9

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++.+|||||||+|+.++.+|+..+ ..+|+++|+++
T Consensus       238 l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~  276 (433)
T 1u2z_A          238 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMD  276 (433)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCH
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCH
Confidence            4556788999999999999999999876 57999999875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.33  E-value=9.1e-07  Score=58.67  Aligned_cols=34  Identities=3%  Similarity=-0.225  Sum_probs=30.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||+|||+|..+.+||+.   +.+|+++|+++
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~   54 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSE   54 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCH
Confidence            46789999999999999999986   56999999985

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.32  E-value=1.3e-06  Score=55.83  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ......+...+...++.+|||+|||+|..+..+++..   ++|+++|+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~   65 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNP   65 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCH
Confidence            4445555555566788899999999999999999875   7999999875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.32  E-value=6.2e-07  Score=60.06  Aligned_cols=49  Identities=16%  Similarity=0.140  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|+...++..+..  ..++.+|||||||+|+.+..+++.   +.+|+++|+++
T Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~   80 (226)
T 3m33_A           30 SGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSP   80 (226)
T ss_dssp             SSSCTTHHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCH
T ss_pred             CCCCHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCH
Confidence            34444555555444  356789999999999999999987   57999999975

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.32  E-value=7e-07  Score=63.34  Aligned_cols=49  Identities=10%  Similarity=0.108  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++..++...+..+|||+|||+|..++.+|+.+++.++|+++|+++
T Consensus       105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~  153 (315)
T 1ixk_A          105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE  153 (315)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCH
Confidence            3445555666667788999999999999999999998679999999985

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.32  E-value=3.7e-07  Score=61.52  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..+....++.+|||||||+|..+..+++..+  ++|+++|+++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~   79 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFP   79 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCH
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCH
Confidence            333444433455678999999999999999999986  4999999975

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.32  E-value=7.7e-07  Score=59.26  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++ .+++.......++.+|||+||| +|..++.+++..  +++|+++|+++
T Consensus        40 p~~~-~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~   89 (230)
T 3evz_A           40 TTPI-SRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDE   89 (230)
T ss_dssp             CCHH-HHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCH
T ss_pred             CCCc-hhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCH
Confidence            3344 3444332334678899999999 999999999986  58999999985

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.32  E-value=1.8e-06  Score=58.73  Aligned_cols=46  Identities=7%  Similarity=0.000  Sum_probs=37.1

Q ss_pred             HHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -.|...... +..+.+|||||||+|-.++.++...| +.+|+++|+|+
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~   83 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDR   83 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCH
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCH
Confidence            345444333 35689999999999999999999887 66999999985

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.31  E-value=4.6e-07  Score=61.99  Aligned_cols=51  Identities=14%  Similarity=0.074  Sum_probs=41.6

Q ss_pred             ccCCHHHHHHHHHHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.+ +.+|..++... ++.+|||+|||+|..++.+++..+  ++|+++|+++
T Consensus        31 ~~~~~d-~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~   82 (259)
T 3lpm_A           31 FSFSID-AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQE   82 (259)
T ss_dssp             BCCCHH-HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSH
T ss_pred             ccCcHH-HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCH
Confidence            344444 56777777777 889999999999999999999854  4999999985

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.31  E-value=1.1e-06  Score=59.02  Aligned_cols=44  Identities=9%  Similarity=0.027  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+....++.+|||+|||+|..++.+++.   +++|+++|+++
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~  110 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDP  110 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCH
Confidence            334444445558899999999999999999985   48999999985

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.31  E-value=4.7e-07  Score=61.52  Aligned_cols=36  Identities=17%  Similarity=0.196  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..++.+|+..+ +++|+++|+++
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~   83 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRV   83 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCH
Confidence            3567999999999999999999987 78999999874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.30  E-value=1.7e-06  Score=56.67  Aligned_cols=49  Identities=12%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+..+..++..   .++++|||+|||+|..++.+++. + ..+|+++|+++
T Consensus        33 ~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~   84 (200)
T 1ne2_A           33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDP   84 (200)
T ss_dssp             CHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCH
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCH
Confidence            34444444444432   36789999999999999999987 4 56899999985

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.30  E-value=4.9e-07  Score=60.31  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|||+|..++.+++.++++++|+++|+++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~  108 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP  108 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH
Confidence            4677999999999999999999886578999999875

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.29  E-value=1.3e-06  Score=60.00  Aligned_cols=47  Identities=13%  Similarity=0.135  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .....++..++...++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~   89 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASD   89 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCH
Confidence            445566777777788899999999999999999986   45999999985

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.28  E-value=6.8e-07  Score=57.37  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=30.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||+|||+|..++.+++. + ..+|+++|+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~   77 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNF   77 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCH
Confidence            46789999999999999998883 3 57999999985

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.28  E-value=6.6e-07  Score=58.99  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=37.4

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.. ....++.+|||||||+|..+..+++..+++++|+++|+++
T Consensus        28 ~~~~~-~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~   72 (219)
T 3dh0_A           28 KVLKE-FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQE   72 (219)
T ss_dssp             HHHHH-HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCH
T ss_pred             HHHHH-hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCH
Confidence            34444 4566788999999999999999999985578999999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.28  E-value=9.4e-07  Score=59.41  Aligned_cols=45  Identities=11%  Similarity=0.042  Sum_probs=34.5

Q ss_pred             HHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+++.  .+..+|||||||+|..+..+++.-  ..+|+++|+++
T Consensus        47 ~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~   93 (236)
T 1zx0_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECND   93 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCH
T ss_pred             HHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCH
Confidence            4455555554  456799999999999999997643  34899999985

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.27  E-value=7.7e-07  Score=61.56  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++...+-+...+...+..+|||||||+|..|..+++. + .++|+++|+|+
T Consensus        15 ~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~   64 (249)
T 3ftd_A           15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDR   64 (249)
T ss_dssp             ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCH
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCH
Confidence            44554444444445556789999999999999999986 3 58999999985

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.26  E-value=2.9e-06  Score=55.60  Aligned_cols=50  Identities=20%  Similarity=0.113  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.....+...+.   ..++++|||+|||+|..++.+++. + ..+|+++|+++
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~   82 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDK   82 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCH
Confidence            44555555444444   336789999999999999999986 3 45899999985

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.26  E-value=2.7e-06  Score=55.79  Aligned_cols=47  Identities=6%  Similarity=0.041  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++..+.. ..++.+|||||||+|..++.+++. + .++|+++|+++
T Consensus        46 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~   93 (205)
T 3grz_A           46 TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISD   93 (205)
T ss_dssp             HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCH
Confidence            34445555444 346789999999999999998874 4 57999999975

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.26  E-value=8.2e-07  Score=60.88  Aligned_cols=49  Identities=16%  Similarity=0.105  Sum_probs=36.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.....+...+...+..+|||||||+|..|..+++.   .++|+++|+|+
T Consensus        14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~   62 (244)
T 1qam_A           14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDH   62 (244)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCH
T ss_pred             CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCH
Confidence            34443333333333456789999999999999999987   37999999985

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.26  E-value=4.6e-07  Score=62.58  Aligned_cols=46  Identities=17%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++...+...+..+|||+|||+|..++.+++.+.++++|+++|+++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~  145 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE  145 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCH
Confidence            3444445566788999999999999999999865578999999875

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.25  E-value=1.1e-06  Score=58.30  Aligned_cols=46  Identities=15%  Similarity=0.086  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..-+++..+-+   ..++.+|||+|||+|..+..+++.   .++|+++|+++
T Consensus         9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~   57 (191)
T 3dou_A            9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQE   57 (191)
T ss_dssp             HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccc
Confidence            34445554443   246789999999999999999987   68999999986

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.25  E-value=6.9e-07  Score=62.53  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++.+|||||||+|..++.+|+.   +++|+++|+++
T Consensus        39 ~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~   77 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQ   77 (261)
T ss_dssp             HTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCH
T ss_pred             HhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCH
Confidence            3345667889999999999999999985   57999999985

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.25  E-value=8.2e-07  Score=61.69  Aligned_cols=51  Identities=14%  Similarity=-0.025  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ........+..+....+.++|||+|||+|..++.+|+..+ .++|+++|+++
T Consensus       103 ~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~  153 (272)
T 3a27_A          103 SQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNP  153 (272)
T ss_dssp             CGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCH
T ss_pred             CCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCH
Confidence            3344444455544556788999999999999999999876 78999999985

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.25  E-value=1e-06  Score=58.45  Aligned_cols=45  Identities=9%  Similarity=0.161  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..+.+..++.+|||||||+|..+..+++..   .+|+++|+++
T Consensus        30 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~   74 (250)
T 2p7i_A           30 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASE   74 (250)
T ss_dssp             HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCH
T ss_pred             HHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCH
Confidence            34455555556788899999999999999999863   4799999875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.25  E-value=1.5e-06  Score=56.18  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        28 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~   64 (199)
T 2xvm_A           28 VKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNA   64 (199)
T ss_dssp             TTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             hhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCH
Confidence            45567889999999999999999986   57999999875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.24  E-value=1e-06  Score=61.13  Aligned_cols=47  Identities=9%  Similarity=0.083  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..++...++.+|||+|||+|..++.+++.++..++|+++|+++
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~  118 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK  118 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCH
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCH
Confidence            34555556667788999999999999999999988569999999975

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.23  E-value=2e-06  Score=57.62  Aligned_cols=48  Identities=23%  Similarity=0.328  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|.....+...+...++.+|||+|||+|..++.+++.   .++|+++|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~  123 (248)
T 2yvl_A           76 YPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVE  123 (248)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCH
T ss_pred             cchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCH
Confidence            3555555555566678899999999999999999998   58999999875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.23  E-value=1.9e-06  Score=62.23  Aligned_cols=53  Identities=13%  Similarity=0.047  Sum_probs=41.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++....++..++...++.+|||+|||+|..++.+++..+...+|+++|+++
T Consensus        22 ~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~   74 (421)
T 2ih2_A           22 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP   74 (421)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCT
T ss_pred             eCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCH
Confidence            44555555555555444567999999999999999999874468999999987

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.23  E-value=2.7e-06  Score=55.74  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.. ....++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        44 ~~~~-~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~   84 (227)
T 3e8s_A           44 ILLA-ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDR   84 (227)
T ss_dssp             HHHH-HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCH
T ss_pred             HHHH-hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCH
Confidence            3443 44567799999999999999999987   57999999975

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.23  E-value=8.3e-07  Score=63.49  Aligned_cols=39  Identities=10%  Similarity=-0.003  Sum_probs=31.5

Q ss_pred             HHHhcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEecCC
Q 044836           49 LLKLINAKNTMEIGVYTG-YSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        49 l~~~~~~~~vLEiGt~~G-~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++..++++|||||||+| ++++.+|+. + +++|+++|+|+
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~-~-ga~V~gIDis~  156 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHV-Y-GMRVNVVEIEP  156 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHT-T-CCEEEEEESSH
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHc-c-CCEEEEEECCH
Confidence            456788999999999987 455666654 4 78999999986

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.23  E-value=1.5e-06  Score=55.66  Aligned_cols=44  Identities=11%  Similarity=0.061  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.+...+...++.+|||||||+|..+..+++.   ..+++++|+++
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~   84 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINR   84 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCH
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCH
Confidence            333433345557889999999999999999987   57999999875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.22  E-value=1.3e-06  Score=61.17  Aligned_cols=49  Identities=16%  Similarity=0.003  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.....+...+...+..+|||||||+|..+..+++.   .++|+++|+|+
T Consensus        12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~   60 (285)
T 1zq9_A           12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDP   60 (285)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCH
Confidence            45555544444455567789999999999999999987   46999999985

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.22  E-value=2.7e-06  Score=56.32  Aligned_cols=43  Identities=12%  Similarity=0.119  Sum_probs=32.9

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+....++.+|||+|||+|..++.+++. + .++|+++|+|+
T Consensus        44 l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~-~-~~~v~gvD~s~   86 (201)
T 2ift_A           44 LFNWLMPYIHQSECLDGFAGSGSLGFEALSR-Q-AKKVTFLELDK   86 (201)
T ss_dssp             HHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCH
T ss_pred             HHHHHHHhcCCCeEEEcCCccCHHHHHHHHc-c-CCEEEEEECCH
Confidence            3444333347889999999999999987765 2 36999999985

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.22  E-value=1e-06  Score=62.90  Aligned_cols=37  Identities=19%  Similarity=0.002  Sum_probs=32.9

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||||||+|+.+.++++..+ .++|+++|+|+
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~  142 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDE  142 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCH
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCH
Confidence            35789999999999999999998755 78999999985

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.22  E-value=1e-06  Score=61.49  Aligned_cols=63  Identities=13%  Similarity=-0.018  Sum_probs=44.4

Q ss_pred             CChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhC-------CC----CCEEEE
Q 044836           16 REHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAI-------PD----DGKVQW   84 (90)
Q Consensus        16 ~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~-------~~----~~~v~~   84 (90)
                      ......+.+..+....++|.        ++.   .+..++.+|||||+|+||++++++++.       |+    ..++++
T Consensus        33 ~~~~l~E~~~vF~~~~~lp~--------r~~---~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~is  101 (257)
T 2qy6_A           33 NDNGLEETRYVFLGGNQLEA--------RFP---EHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFIS  101 (257)
T ss_dssp             TTTHHHHHHHHHHHHTTHHH--------HGG---GCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEE
T ss_pred             CCCHHHHHHHHHHhccchHH--------HHH---hcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEE
Confidence            55666677777777666541        111   223456799999999999999988864       42    258999


Q ss_pred             EecCC
Q 044836           85 MNTNL   89 (90)
Q Consensus        85 ie~~~   89 (90)
                      +|.+|
T Consensus       102 iE~~p  106 (257)
T 2qy6_A          102 FEKFP  106 (257)
T ss_dssp             EESSC
T ss_pred             EECCc
Confidence            99876

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.21  E-value=1e-06  Score=59.27  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..++...    ++.+|||||||+|..+..+++..  ..+|+++|+++
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~  112 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITE  112 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCH
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCH
Confidence            445565555443    57899999999999999998875  46999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.21  E-value=8.7e-07  Score=63.79  Aligned_cols=36  Identities=19%  Similarity=0.091  Sum_probs=32.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|+.+..+++..+ ..+|+++|+|+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~  154 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDK  154 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCH
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCH
Confidence            5789999999999999999998755 78999999985

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.21  E-value=2.8e-06  Score=57.80  Aligned_cols=49  Identities=20%  Similarity=0.222  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +....+...+.+.  .++.+|||||||+|..+..+++.++ +++|+++|+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~  119 (269)
T 1p91_A           69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSK  119 (269)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCH
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCH
Confidence            4444455555544  4678999999999999999999886 68999999875

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.21  E-value=7.9e-07  Score=60.69  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++..| +++++++|+++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~   71 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISP   71 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCH
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCH
Confidence            35778999999999999999999976 78999999975

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.20  E-value=1.3e-06  Score=61.04  Aligned_cols=36  Identities=14%  Similarity=0.021  Sum_probs=32.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||||||+|..+..+++. + .++|+++|+|+
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~  108 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDE  108 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCH
Confidence            457899999999999999999998 5 78999999985

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.20  E-value=3.7e-06  Score=53.07  Aligned_cols=33  Identities=9%  Similarity=-0.137  Sum_probs=29.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++++|||+|||+|..++.+++.-+   +|+++|+++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~   73 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDP   73 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCH
Confidence            788999999999999999998743   499999975

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.19  E-value=8.6e-07  Score=58.39  Aligned_cols=42  Identities=19%  Similarity=0.110  Sum_probs=33.1

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+....++.+|||||||+|..+..+++.   ..+|+++|+++
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~   83 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMP   83 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCH
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCH
Confidence            3333344456779999999999999999986   46999999975

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.19  E-value=1.5e-06  Score=61.35  Aligned_cols=50  Identities=18%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++...+.+...+...+..+|||||||+|..+..+++.   .++|+++|+++
T Consensus        25 l~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~   74 (299)
T 2h1r_A           25 LKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDS   74 (299)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCH
T ss_pred             ecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCH
Confidence            345665555555566667889999999999999999985   57999999985

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.19  E-value=1e-06  Score=62.45  Aligned_cols=36  Identities=17%  Similarity=-0.004  Sum_probs=32.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..+ ..+|+++|+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~  129 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDE  129 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCH
Confidence            5789999999999999999998755 78999999985

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.18  E-value=1.9e-06  Score=61.29  Aligned_cols=47  Identities=17%  Similarity=0.073  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..-++...+-..   .+.++|||||||||+.|.++++. + .++|+++|+++
T Consensus        69 g~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~  118 (291)
T 3hp7_A           69 GGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGT  118 (291)
T ss_dssp             THHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSS
T ss_pred             hHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCH
Confidence            333444444333   25679999999999999999886 3 57999999986

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.17  E-value=5e-06  Score=55.84  Aligned_cols=45  Identities=18%  Similarity=0.201  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..+++.   .++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~   73 (252)
T 1wzn_A           26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHE   73 (252)
T ss_dssp             HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCH
Confidence            34455555544   35689999999999999999985   57999999975

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.17  E-value=1.8e-06  Score=64.89  Aligned_cols=49  Identities=14%  Similarity=0.102  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++..++...++.+|||+|||+|..|+.+|+.+++.++|+++|+++
T Consensus        88 ~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~  136 (464)
T 3m6w_A           88 PSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDG  136 (464)
T ss_dssp             TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             HHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCH
Confidence            3455666666777889999999999999999999998779999999985

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.16  E-value=3.7e-06  Score=54.78  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=34.1

Q ss_pred             HHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+++..  ++.+|||||||+|..+..+++. + +.+++++|+++
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~   76 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSK   76 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCH
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCH
Confidence            3444444433  3349999999999999999998 4 68999999875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.16  E-value=2.1e-06  Score=56.41  Aligned_cols=42  Identities=21%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             HHHHHH-HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLL-KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..++ ...++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        33 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~   75 (211)
T 3e23_A           33 TLTKFLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSP   75 (211)
T ss_dssp             HHHHHHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCH
Confidence            333333 4456789999999999999999986   57999999975

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.16  E-value=1.9e-06  Score=59.76  Aligned_cols=48  Identities=6%  Similarity=-0.098  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++...+-+...+...+..+|||||||+|+.|. +++. + .++|+++|+|+
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~~-~-~~~v~avEid~   53 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVGE-R-LDQLTVIELDR   53 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHHT-T-CSCEEEECCCH
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhhC-C-CCeEEEEECCH
Confidence            44444444444455667899999999999999 6642 2 34499999985

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.16  E-value=2.6e-06  Score=58.47  Aligned_cols=37  Identities=16%  Similarity=0.082  Sum_probs=32.4

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++.+|||||||+|..+..+++  + +++|+++|+++
T Consensus        53 l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~   89 (279)
T 3ccf_A           53 LNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAA   89 (279)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCH
T ss_pred             hCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCH
Confidence            4556788999999999999999998  3 78999999875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.15  E-value=3.9e-06  Score=58.23  Aligned_cols=46  Identities=11%  Similarity=-0.003  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+..+++.   .++.+|||||||+|..+..+++..+  .+|+++|+++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~  105 (302)
T 3hem_A           57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSE  105 (302)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCH
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCH
Confidence            33444455544   4667999999999999999999875  7999999975

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.15  E-value=3.2e-06  Score=55.96  Aligned_cols=35  Identities=9%  Similarity=-0.041  Sum_probs=29.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||+|||+|..++.+++.-  ..+|+++|+++
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~   87 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDR   87 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCH
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCH
Confidence            478899999999999999877652  35999999985

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.15  E-value=4.3e-06  Score=56.24  Aligned_cols=44  Identities=9%  Similarity=0.086  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..-+.......++.+|||||||+|..+..+++..   .+|+++|+++
T Consensus        10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~   53 (239)
T 1xxl_A           10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATK   53 (239)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCH
T ss_pred             cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCH
Confidence            3344444777889999999999999999999874   5899999875

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.15  E-value=1.8e-06  Score=62.48  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++..+++++|+++|+++
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~  118 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD  118 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCH
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCH
Confidence            45788999999999999999999986588999999975

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.15  E-value=2.9e-06  Score=60.83  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=32.6

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++++|||||||+|..++.+++. + ..+|+++|+++
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s~   99 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSS   99 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECST
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcHH
Confidence            4578899999999999999999997 4 57999999974

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.15  E-value=2e-06  Score=61.03  Aligned_cols=37  Identities=14%  Similarity=0.002  Sum_probs=32.8

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+|+
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~  111 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDG  111 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH
Confidence            35789999999999999999998755 78999999985

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.15  E-value=2.7e-06  Score=59.00  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             HHHHHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+.... ...+|||||||+|..+..|++.   ..+|+++|+++
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~   71 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGE   71 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCH
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcH
Confidence            555555554 3569999999999999999976   46899999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.14  E-value=4.9e-06  Score=53.18  Aligned_cols=43  Identities=12%  Similarity=0.055  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..+  ..++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        36 ~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~   78 (195)
T 3cgg_A           36 EARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDP   78 (195)
T ss_dssp             HHHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCH
Confidence            35566665  457889999999999999999987   57999999875

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.14  E-value=3e-06  Score=55.28  Aligned_cols=46  Identities=9%  Similarity=0.017  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +....++..+.... +.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        28 ~~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~   73 (203)
T 3h2b_A           28 DPDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPAT   73 (203)
T ss_dssp             CTTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCH
T ss_pred             HHHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCH
Confidence            33455666655544 889999999999999999987   56899999875

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.14  E-value=3e-06  Score=63.68  Aligned_cols=48  Identities=8%  Similarity=0.068  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..++...  ++.+|||+|||+|..|+.+|+.+++.++|+++|+++
T Consensus       103 ~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~  152 (479)
T 2frx_A          103 SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSA  152 (479)
T ss_dssp             HHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             HHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence            344444555555  788999999999999999999998779999999985

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.14  E-value=1.3e-06  Score=58.80  Aligned_cols=37  Identities=14%  Similarity=0.066  Sum_probs=32.9

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++..| +++++++|+++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~   67 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDD   67 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCH
Confidence            34678999999999999999999987 78999999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.13  E-value=2.2e-06  Score=62.43  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=32.8

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.+|||+|||+|..++.+++..| +.+|+++|+++
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~  256 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESP  256 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCH
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcH
Confidence            34458999999999999999999987 78999999985

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.13  E-value=3.7e-06  Score=58.46  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec-CC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT-NL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~-~~   89 (90)
                      .-.+...+...   .++++|||||||+|+.++.+++. + .++|+++|+ ++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~  113 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDP  113 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCH
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCH
Confidence            34444444433   46789999999999999999885 3 459999999 64

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.13  E-value=6.2e-06  Score=58.61  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++++|||||||+|..++.+++. + ..+|+++|+++
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s~   71 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS   71 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChHH
Confidence            45678899999999999999999986 4 56999999874

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.13  E-value=4.3e-06  Score=55.05  Aligned_cols=43  Identities=23%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+ ...++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        35 ~~~l~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~   77 (220)
T 3hnr_A           35 EDILEDV-VNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSR   77 (220)
T ss_dssp             HHHHHHH-HHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCH
T ss_pred             HHHHHHh-hccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCH
Confidence            4555553 4457889999999999999999986   57999999975

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.13  E-value=4.9e-06  Score=57.16  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=34.3

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.. +...++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus       111 ~~~~~-~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~  152 (286)
T 3m70_A          111 DVVDA-AKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNE  152 (286)
T ss_dssp             HHHHH-HHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHH-hhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCH
Confidence            34444 34458899999999999999999987   56999999985

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.12  E-value=3.5e-06  Score=57.06  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...++.. +...++.+|||||||+|..+..+++..   ++|+++|+++
T Consensus        25 ~~~~l~~~-l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~   69 (260)
T 1vl5_A           25 DLAKLMQI-AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTE   69 (260)
T ss_dssp             CHHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCH
T ss_pred             HHHHHHHH-hCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCH
Confidence            33434443 455678899999999999999999874   4999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.12  E-value=1.5e-06  Score=58.39  Aligned_cols=35  Identities=14%  Similarity=0.099  Sum_probs=30.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||||||+|..+..+++.   +.+|+++|+++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~   73 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINE   73 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCH
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCH
Confidence            456789999999999999999986   56899999875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.12  E-value=3.9e-06  Score=60.07  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++++|||||||+|..++.+++. + ..+|+++|+++
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~   97 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE   97 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH
Confidence            3467889999999999999999986 4 56999999874

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.12  E-value=2.8e-06  Score=55.33  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=32.8

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..++...++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        20 ~l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~   61 (202)
T 2kw5_A           20 FLVSVANQIPQGKILCLAEGEGRNACFLASL---GYEVTAVDQSS   61 (202)
T ss_dssp             SHHHHHHHSCSSEEEECCCSCTHHHHHHHTT---TCEEEEECSSH
T ss_pred             HHHHHHHhCCCCCEEEECCCCCHhHHHHHhC---CCeEEEEECCH
Confidence            4444444444449999999999999999985   56999999875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.11  E-value=1.3e-06  Score=60.92  Aligned_cols=38  Identities=8%  Similarity=-0.130  Sum_probs=32.1

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..++.+|....++++|+++|+++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~  153 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDP  153 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCH
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCH
Confidence            46788999999999999999974444488999999975

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.10  E-value=5.1e-06  Score=60.64  Aligned_cols=49  Identities=18%  Similarity=0.248  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHHHHhc-----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~-----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++....++..+....     ++.+|||+|||+|..++.+++.   +.+|+++|+|+
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~  265 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDL  265 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBH
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCH
Confidence            3566666777766654     6779999999999999999986   57999999975

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.09  E-value=2.7e-06  Score=57.08  Aligned_cols=35  Identities=9%  Similarity=0.072  Sum_probs=30.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||||||+|..+..+++..+   +|+++|+++
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~   88 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSK   88 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCH
Confidence            35667999999999999999999754   799999975

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.09  E-value=3.9e-06  Score=55.84  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=34.3

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..++...++++|||||||+|..+..+++. + ..+++++|+++
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~   76 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSE   76 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCH
Confidence            4444455567889999999999999999986 3 24999999874

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.09  E-value=5e-06  Score=56.47  Aligned_cols=47  Identities=15%  Similarity=0.200  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+...++..   .++.+|||||||+|..+..+++..  +++|+++|+++
T Consensus        45 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~   94 (273)
T 3bus_A           45 ATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISR   94 (273)
T ss_dssp             HHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCH
Confidence            344455555544   467799999999999999999876  47999999875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.08  E-value=4.8e-06  Score=54.29  Aligned_cols=48  Identities=15%  Similarity=0.028  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+++..+....++.+|||+|||+|..++.++...  +.+|+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~   56 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISD   56 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCH
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCH
Confidence            3445677776677778999999999999755544432  57999999875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.08  E-value=2.7e-06  Score=57.68  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             HHHHHHHHhc---CCCeEEEEcccccHHHHHHHhh--CCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLI---NAKNTMEIGVYTGYSLLVTALA--IPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~---~~~~vLEiGt~~G~sal~la~~--~~~~~~v~~ie~~~   89 (90)
                      .++..++...   ++.+|||+|||+|..++.+++.  .+ ..+|+++|+|+
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~   87 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDP   87 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCH
Confidence            4555555443   5679999999999999999998  34 67999999985

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.08  E-value=2.6e-06  Score=60.74  Aligned_cols=49  Identities=14%  Similarity=0.155  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++..++...+..+|||+|||+|..|+.+|+.+++.++|+++|+++
T Consensus        89 ~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~  137 (309)
T 2b9e_A           89 RASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA  137 (309)
T ss_dssp             TGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCH
Confidence            3445556666777888999999999999999999987679999999975

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.08  E-value=3.2e-06  Score=60.31  Aligned_cols=37  Identities=11%  Similarity=-0.015  Sum_probs=32.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+|+
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~  150 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE  150 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCH
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCH
Confidence            35789999999999999999998755 78999999985

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.08  E-value=2.6e-06  Score=63.81  Aligned_cols=49  Identities=8%  Similarity=-0.016  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++..++...++.+|||+|||+|..|+.+|+.+++.++|+++|+++
T Consensus        92 ~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~  140 (456)
T 3m4x_A           92 PSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFP  140 (456)
T ss_dssp             TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCH
Confidence            4455666667777889999999999999999999998779999999985

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.07  E-value=6.6e-06  Score=54.77  Aligned_cols=42  Identities=10%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             HHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+... .++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~   85 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISE   85 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCH
Confidence            44444443 46789999999999999999987   57999999875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.07  E-value=3.5e-06  Score=59.31  Aligned_cols=36  Identities=19%  Similarity=0.004  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..+ .++|+++|+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~  124 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDG  124 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH
Confidence            4788999999999999999998765 68999999985

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.07  E-value=1.2e-05  Score=55.03  Aligned_cols=46  Identities=13%  Similarity=0.158  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+..+.+. .++++|||+|||+|..++.+++. +  .+|+++|+++
T Consensus       106 tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~  152 (254)
T 2nxc_A          106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDP  152 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCG
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCH
Confidence            333445554443 56789999999999999998884 3  3999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.07  E-value=5.4e-06  Score=56.39  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=29.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~   86 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSK   86 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCH
Confidence            6789999999999999999986   57999999975

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.07  E-value=7.4e-06  Score=56.24  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=29.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~  100 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSA  100 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCH
Confidence            3569999999999999999987   57999999975

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.07  E-value=3.7e-06  Score=58.65  Aligned_cols=36  Identities=11%  Similarity=0.004  Sum_probs=31.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..+ ..+|+++|+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~  109 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDG  109 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCH
Confidence            4789999999999999999998644 68999999985

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.06  E-value=6.6e-06  Score=58.90  Aligned_cols=37  Identities=16%  Similarity=0.174  Sum_probs=31.7

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++++|||||||+|..++.+++. + .++|+++|+++
T Consensus        47 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~   83 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST   83 (348)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST
T ss_pred             ccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH
Confidence            3457889999999999999999985 3 57999999875

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.06  E-value=9.4e-07  Score=60.24  Aligned_cols=48  Identities=17%  Similarity=0.091  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.....+...+...+..+|||||||+|..+..+++.   .++|+++|+++
T Consensus        14 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~   61 (245)
T 1yub_A           14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDS   61 (245)
T ss_dssp             CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCH
Confidence            3433333333344556779999999999999999987   37999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.05  E-value=8.6e-06  Score=55.20  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+.... ++.+|||||||+|..+..+++.   ..+|+++|+++
T Consensus        38 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~   82 (263)
T 3pfg_A           38 ADLAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSA   82 (263)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCH
T ss_pred             HHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCH
Confidence            34444444443 4589999999999999999886   46899999975

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.05  E-value=7.3e-06  Score=65.90  Aligned_cols=42  Identities=10%  Similarity=-0.040  Sum_probs=35.6

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++...++.+|||||||+|+.+..+++..++..+|+++|+++
T Consensus       715 elL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~  756 (950)
T 3htx_A          715 KHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISP  756 (950)
T ss_dssp             HHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCH
T ss_pred             HHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCH
Confidence            334455899999999999999999999875568999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.04  E-value=6.3e-06  Score=54.34  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~   62 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINS   62 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCH
Confidence            346789999999999999999987   57999999975

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.04  E-value=6.9e-06  Score=60.35  Aligned_cols=49  Identities=14%  Similarity=0.075  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++..++...++.+|||+|||+|..+..+++.++ +++|+++|+++
T Consensus       232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~  280 (429)
T 1sqg_A          232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDE  280 (429)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESST
T ss_pred             CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCH
Confidence            35566666667777888999999999999999999988 59999999986

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.04  E-value=6.7e-06  Score=55.26  Aligned_cols=35  Identities=17%  Similarity=0.058  Sum_probs=30.7

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++.   +++|+++|+++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~   71 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADA   71 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCH
Confidence            356789999999999999999986   57999999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.04  E-value=6.9e-06  Score=54.49  Aligned_cols=45  Identities=7%  Similarity=-0.142  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.+..++...  ++.+|||||||+|..+..+++.   +.+++++|+++
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~   69 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQ   69 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCH
Confidence            344444444444  6789999999999999999986   46899999874

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.03  E-value=5.6e-06  Score=61.31  Aligned_cols=49  Identities=12%  Similarity=0.188  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~  294 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK  294 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCH
Confidence            4455666666777788999999999999999999998559999999975

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.03  E-value=3.1e-06  Score=58.91  Aligned_cols=34  Identities=3%  Similarity=-0.058  Sum_probs=30.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|+.+..+++. +  ++|+++|+|+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~  104 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADE  104 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCH
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCH
Confidence            46899999999999999999988 5  8999999985

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.03  E-value=7.8e-06  Score=56.33  Aligned_cols=37  Identities=11%  Similarity=0.075  Sum_probs=31.8

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++.+|||||||+|..+..+++..+  .+|+++|+++
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~  115 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAP  115 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCH
Confidence            345678999999999999999999763  6999999875

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.02  E-value=4.4e-06  Score=58.96  Aligned_cols=36  Identities=11%  Similarity=-0.049  Sum_probs=32.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..+ ..+|+++|+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~  129 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDG  129 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCH
Confidence            5788999999999999999998754 68999999985

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.01  E-value=8.6e-06  Score=58.57  Aligned_cols=36  Identities=11%  Similarity=0.001  Sum_probs=31.8

Q ss_pred             cCCC--eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAK--NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~--~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++  +||+||||+|..+.++++..| +.+|+++|+|+
T Consensus        86 p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp  123 (317)
T 3gjy_A           86 QDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDA  123 (317)
T ss_dssp             SCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCH
T ss_pred             CCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCH
Confidence            3455  999999999999999999887 67999999985

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.01  E-value=8.9e-06  Score=60.60  Aligned_cols=37  Identities=19%  Similarity=0.064  Sum_probs=31.0

Q ss_pred             cCCCeEEEEccc------ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVY------TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~------~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||      +|..++.+++...++++|+++|+++
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp  257 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMD  257 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            368899999999      7788888887653389999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.01  E-value=5.5e-06  Score=62.97  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+|.+|||||||.|..+..||+.   +++|++||.++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~   98 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQ   98 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCH
Confidence            347889999999999999999985   68999999874

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.00  E-value=1.3e-05  Score=52.76  Aligned_cols=34  Identities=6%  Similarity=-0.108  Sum_probs=29.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+++..+   +++++|+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~   70 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISE   70 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCH
Confidence            3478999999999999999998743   899999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.99  E-value=1.2e-05  Score=55.21  Aligned_cols=47  Identities=9%  Similarity=0.058  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+..+++.   .++.+|||||||+|..+..+++..+  .+|+++|+++
T Consensus        48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~   97 (287)
T 1kpg_A           48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSK   97 (287)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCH
Confidence            334455555544   4567999999999999999997665  5999999875

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.99  E-value=2.4e-06  Score=59.78  Aligned_cols=36  Identities=11%  Similarity=0.118  Sum_probs=31.1

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||||||+|..+..+++..  +++|+++|+++
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~  150 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSA  150 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCH
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCH
Confidence            3457799999999999999999975  47999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.99  E-value=8.4e-06  Score=58.00  Aligned_cols=38  Identities=13%  Similarity=0.045  Sum_probs=34.1

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+..+|||+|||+|..++.+++.++ +++|+++|+|+
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~   60 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDS   60 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCH
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCH
Confidence            445678999999999999999999998 79999999985

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.98  E-value=5e-06  Score=56.00  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++.-+  .+|+++|+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~   77 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSE   77 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCH
Confidence            3678999999999999999998733  3999999875

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.97  E-value=1.1e-05  Score=59.05  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=30.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++|||||||+|..++..|++ + ..+|++||.++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~  116 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASA  116 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChH
Confidence            458899999999999999888875 3 46899999875

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.96  E-value=1.2e-05  Score=58.16  Aligned_cols=49  Identities=14%  Similarity=0.083  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..++.+..++ ..+..+|||+|||+|..++.+|+..+ .++|+++|+|+
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~  251 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYR  251 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCH
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCH
Confidence            455566666666 67788999999999999999998765 67999999985

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.96  E-value=1.3e-05  Score=60.06  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=33.1

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+..+|||||||+|..++.+|...+ ..++++||+++
T Consensus       169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~  207 (438)
T 3uwp_A          169 IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKAD  207 (438)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCH
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCH
Confidence            3456778999999999999999998776 56899999985

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.96  E-value=5.3e-06  Score=57.99  Aligned_cols=36  Identities=11%  Similarity=0.004  Sum_probs=32.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++..+ ..+|+++|+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~  112 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE  112 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCH
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCH
Confidence            4789999999999999999998754 78999999985

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=97.96  E-value=1.7e-05  Score=52.53  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=32.9

Q ss_pred             HHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+.+. .++.+|||||||+|..+..+++..   .+++++|+++
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~   72 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSE   72 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCH
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCH
Confidence            33343333 467899999999999999999874   3899999875

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.94  E-value=9.5e-06  Score=58.75  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.1

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      ...++++|||||||+|..++.+++. + ..+|+++|++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s   95 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT   95 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH
Confidence            3467889999999999999999987 3 4599999987

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.94  E-value=6.5e-06  Score=54.17  Aligned_cols=42  Identities=7%  Similarity=-0.088  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..+....++.+|||||||+|..+..++      .+++++|+++
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~   96 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLAS   96 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSC
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCC
Confidence            34566666656677899999999999888773      6799999986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.93  E-value=4.5e-06  Score=55.74  Aligned_cols=33  Identities=12%  Similarity=0.042  Sum_probs=28.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++   .+.+|+++|+++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~   98 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISE   98 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCH
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCH
Confidence            466999999999999999976   278999999975

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.92  E-value=6.7e-06  Score=57.11  Aligned_cols=43  Identities=9%  Similarity=0.017  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++...+...+..+|||+|||+|..++.+|+.   +++|+++|+++
T Consensus        73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~  115 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHP  115 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCH
T ss_pred             HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECCh
Confidence            34444445556789999999999999999985   57999999986

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.92  E-value=7.1e-06  Score=57.20  Aligned_cols=46  Identities=13%  Similarity=0.060  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+..++..   .++.+|||||||+|..+..+++..  +.+|+++|+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~  123 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSK  123 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCH
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCH
Confidence            34455555543   456799999999999999999876  46999999975

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.91  E-value=4.8e-06  Score=52.85  Aligned_cols=37  Identities=11%  Similarity=0.029  Sum_probs=31.8

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+..+|||||||+|..+..+++..   .+++++|+++
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~   49 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINV   49 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCH
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCH
Confidence            345677899999999999999999875   4999999875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.91  E-value=6.4e-06  Score=55.18  Aligned_cols=35  Identities=6%  Similarity=0.001  Sum_probs=30.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+++..  ..+|+++|+++
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~  126 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVK  126 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCH
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCH
Confidence            357899999999999999999875  46899999875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.90  E-value=4.6e-06  Score=59.47  Aligned_cols=36  Identities=11%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.+|||||||+|..++.+++..+ +.+|+++|+++
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~  230 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSA  230 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBH
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCH
Confidence            4567999999999999999999876 67999999875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.90  E-value=1.4e-05  Score=52.00  Aligned_cols=43  Identities=12%  Similarity=-0.037  Sum_probs=33.7

Q ss_pred             HHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+.+. .++.+|||||||+|..+..+++.-+  .+|+++|+++
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~   75 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSS   75 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCH
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCH
Confidence            44444443 5677999999999999999998733  3899999875

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.90  E-value=9.7e-06  Score=56.31  Aligned_cols=35  Identities=14%  Similarity=-0.046  Sum_probs=30.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||+|||+|..++.+|+..+ . +|+++|+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~  158 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDP  158 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCH
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCH
Confidence            4488999999999999999999854 2 899999985

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.89  E-value=1.3e-05  Score=52.51  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=30.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+++. +  .+++++|+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~   64 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFP   64 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCH
Confidence            47889999999999999999987 4  8999999875

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.89  E-value=2.2e-05  Score=54.62  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=34.3

Q ss_pred             HHHHHHHHHh----cCCCeEEEEcccc---cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKL----INAKNTMEIGVYT---GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~----~~~~~vLEiGt~~---G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+++.    .+..+|||||||+   |..+..+++..| +++|+++|+++
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp  114 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDP  114 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSH
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECCh
Confidence            4455544432    3458999999999   988777776666 78999999985

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.88  E-value=2e-05  Score=57.55  Aligned_cols=39  Identities=23%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..++.+|||+|||+|..++.+|+.++ +.+|+++|+|+
T Consensus        43 l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~   81 (378)
T 2dul_A           43 LNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISE   81 (378)
T ss_dssp             HHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCH
T ss_pred             HHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCH
Confidence            3445889999999999999999999987 67899999985

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.87  E-value=1.3e-05  Score=57.16  Aligned_cols=50  Identities=18%  Similarity=-0.005  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..++.+..++...+..+|||+|||+|..++.+|...+++++|+++|+|+
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~  238 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDE  238 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCH
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCH
Confidence            44455555555566788999999999999999999873378999999985

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.87  E-value=1.6e-05  Score=52.86  Aligned_cols=41  Identities=22%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             HHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+.+. .+.++|||||||+|..+..+++.    .+++++|+++
T Consensus        23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~   64 (243)
T 3d2l_A           23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSE   64 (243)
T ss_dssp             HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCH
T ss_pred             HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCH
Confidence            44444444 34689999999999999999876    6899999875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.85  E-value=2.5e-05  Score=55.93  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||+|||+|..++.+|+.   +.+|+++|+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~  185 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASK  185 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCH
T ss_pred             CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCH
Confidence            35679999999999999999985   45999999985

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.85  E-value=1.5e-05  Score=55.19  Aligned_cols=33  Identities=9%  Similarity=-0.056  Sum_probs=29.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~  114 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELST  114 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCH
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCH
Confidence            4559999999999999999986   57899999975

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.84  E-value=6.7e-06  Score=56.74  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=25.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..++.++. .+ ..+|+++|+++
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~-~~-~~~v~gvD~s~  104 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSAC-SH-FEDITMTDFLE  104 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGG-GG-CSEEEEECSCH
T ss_pred             CCCeEEEECCCcChHHHHhhc-cC-CCeEEEeCCCH
Confidence            678999999999994443333 23 56999999975

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.83  E-value=5e-05  Score=49.63  Aligned_cols=43  Identities=5%  Similarity=-0.052  Sum_probs=33.2

Q ss_pred             HHHHHHHhc-CCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLI-NAKNTMEIGVYTGY-SLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~-~~~~vLEiGt~~G~-sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+.+-. .+.+|||||||.|+ .|.+|++..  +..|+++|+++
T Consensus        25 LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp   69 (153)
T 2k4m_A           25 LAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKP   69 (153)
T ss_dssp             HHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSC
T ss_pred             HHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCc
Confidence            444444444 46799999999994 999999753  57899999987

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.82  E-value=2.6e-05  Score=54.36  Aligned_cols=34  Identities=15%  Similarity=0.083  Sum_probs=29.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++. + ..+++++|+++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~   67 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIAD   67 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCH
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCH
Confidence            6789999999999999999983 3 67999999875

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.80  E-value=2.5e-05  Score=54.37  Aligned_cols=47  Identities=13%  Similarity=0.008  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +....++...+-+  ..+.++|||||||+|.-+..+++.    ++|+++|+++
T Consensus        57 sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~  105 (265)
T 2oxt_A           57 SRGTAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT  105 (265)
T ss_dssp             STHHHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC
T ss_pred             chHHHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch
Confidence            3444444444333  235679999999999999999986    7899999875

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.79  E-value=2.7e-05  Score=54.60  Aligned_cols=33  Identities=12%  Similarity=0.021  Sum_probs=29.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||||||+|..+..+++.    ++|+++|+++
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~  113 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT  113 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch
Confidence            35679999999999999999986    6899999875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.79  E-value=3.5e-05  Score=54.83  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=31.7

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ..++.+|||||||+|..+..+++..| +.+++++|+
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~  222 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL  222 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec
Confidence            34678999999999999999999988 789999998

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.79  E-value=4.7e-05  Score=57.07  Aligned_cols=35  Identities=17%  Similarity=0.221  Sum_probs=30.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..++.+++. + ..+|+++|+++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~  191 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST  191 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH
Confidence            46789999999999999999883 4 57999999864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.78  E-value=3.7e-05  Score=52.46  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=30.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+++. + .++++++|+++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~   97 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAE   97 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCH
Confidence            57789999999999999998876 3 56999999875

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.74  E-value=7.8e-05  Score=55.12  Aligned_cols=50  Identities=12%  Similarity=0.044  Sum_probs=37.7

Q ss_pred             cCCHHHHHH-HHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQF-LSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~l-l~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.+.+. +..+....+.++|||+|||+|..++.+|+.   ..+|+++|+++
T Consensus       272 q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~  322 (425)
T 2jjq_A          272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNE  322 (425)
T ss_dssp             CSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCH
T ss_pred             ccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCH
Confidence            334454444 344444567789999999999999999985   56999999985

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.73  E-value=4.7e-05  Score=56.06  Aligned_cols=45  Identities=11%  Similarity=0.023  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++..++..   .+..+|||+|||+|..++.+|+.   .++|+++|+++
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~  318 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVP  318 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCH
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCH
Confidence            44455544443   35679999999999999999987   57999999985

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.71  E-value=3.1e-05  Score=54.58  Aligned_cols=36  Identities=14%  Similarity=-0.011  Sum_probs=31.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++|||+|||+|+.++.+|+. + .++|+++|+||
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g-~~~V~avD~np  158 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDP  158 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-T-CCEEEEECCCH
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-c-CCeEEEEECCH
Confidence            356889999999999999999986 3 47999999986

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.70  E-value=8.9e-05  Score=51.77  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=31.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .++.+|||||||+|..+..+++..| +.+++++|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~  198 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA  198 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH
Confidence            5678999999999999999999987 7899999975

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.70  E-value=5e-05  Score=54.37  Aligned_cols=34  Identities=18%  Similarity=0.097  Sum_probs=31.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .++++|||||||+|..+..+++..| +.+++.+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  211 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL  211 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC
Confidence            5789999999999999999999988 789999997

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.69  E-value=5.1e-05  Score=55.64  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=31.5

Q ss_pred             HHHhcC-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           49 LLKLIN-AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        49 l~~~~~-~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +....+ +++|||+|||+|..++.+|+.   +++|+++|+|+
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~  246 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDL  246 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCH
Confidence            334445 889999999999999999985   45699999985

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.68  E-value=2.5e-05  Score=51.10  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=25.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+    + ..+++++|+++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~   66 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSE   66 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCH
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCH
Confidence            6789999999999988777    2 23899999875

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.67  E-value=8.4e-05  Score=53.43  Aligned_cols=34  Identities=12%  Similarity=0.062  Sum_probs=30.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+..+|||||||+|..+..+++..| +.+++.+|+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  235 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL  235 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh
Confidence            3468999999999999999999998 789999996

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.67  E-value=5.8e-05  Score=53.32  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=30.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      +.+|||||||+|..+..+++..| +.+++.+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  211 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL  211 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC
Confidence            88999999999999999999998 689999997

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.67  E-value=5.1e-05  Score=54.12  Aligned_cols=34  Identities=9%  Similarity=-0.028  Sum_probs=29.9

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++|||+|||+|..++. |+  + .++|+++|+|+
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~  226 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINP  226 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCH
T ss_pred             cCCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCH
Confidence            35788999999999999999 77  3 78999999985

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.67  E-value=9.6e-06  Score=54.55  Aligned_cols=35  Identities=11%  Similarity=0.037  Sum_probs=28.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..+..+++.-.  .+|+++|+++
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~   89 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTD   89 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCH
Confidence            4567999999999999998887532  5899999875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.67  E-value=0.00013  Score=52.35  Aligned_cols=34  Identities=15%  Similarity=0.075  Sum_probs=30.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+..+|||||||+|..+..+++..| +.+++.+|+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  233 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL  233 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC
Confidence            3578999999999999999999998 788999987

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.66  E-value=5.1e-05  Score=53.91  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .++.+|||||||+|..+..+++..| +.+++++|+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~  214 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL  214 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC
Confidence            4678999999999999999999987 789999996

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.66  E-value=3.2e-05  Score=53.95  Aligned_cols=39  Identities=13%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             HHHHhcCC--CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINA--KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~--~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++  .+|||+|||+|..++++|+.   +++|+++|+++
T Consensus        80 ~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~  120 (258)
T 2oyr_A           80 KAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNP  120 (258)
T ss_dssp             HHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCH
T ss_pred             HHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCH
Confidence            33445566  89999999999999999997   57899999986

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.65  E-value=9.5e-05  Score=53.74  Aligned_cols=35  Identities=11%  Similarity=0.062  Sum_probs=30.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||+|||+|..++.+|+. + ..+|+++|+++
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~  245 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAK  245 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCH
Confidence            67889999999999999999985 2 35899999986

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.64  E-value=3.4e-05  Score=54.87  Aligned_cols=52  Identities=8%  Similarity=-0.019  Sum_probs=39.2

Q ss_pred             CCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCC----CEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDD----GKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~----~~v~~ie~~~   89 (90)
                      .+.....++..++..    .+..+|||+|||+|..++.+++.+++.    .+++++|+++
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~  169 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD  169 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCH
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCH
Confidence            344555555554432    245799999999999999999988743    7999999985

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.64  E-value=5.5e-05  Score=53.73  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=31.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ..+..+|||||||+|..+..+++..| +.+++.+|+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  220 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR  220 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC
Confidence            34678999999999999999999988 789999997

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.61  E-value=6.9e-05  Score=52.54  Aligned_cols=33  Identities=9%  Similarity=-0.056  Sum_probs=29.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|.+|||||||+|-.++.+.   + ..+++++|+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~  136 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQ  136 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBH
T ss_pred             CCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCH
Confidence            579999999999999988877   4 89999999985

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.60  E-value=6.2e-05  Score=54.54  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=33.1

Q ss_pred             HHHHhc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLI-NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~-~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.... +.++|||+|||+|..++.+|+. + .++|+++|+++
T Consensus       210 ~~~~~~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~  250 (396)
T 2as0_A          210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSP  250 (396)
T ss_dssp             HHGGGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             HHHHHhhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCH
Confidence            334445 7889999999999999999986 3 56999999985

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.60  E-value=0.0001  Score=53.43  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=33.8

Q ss_pred             HHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           47 SMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        47 ~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+....++++|||+|||+|..++.+|+. + .++|+++|+++
T Consensus       213 ~~l~~~~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~  253 (396)
T 3c0k_A          213 LATRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQ  253 (396)
T ss_dssp             HHHHHHCTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCH
T ss_pred             HHHHHhhCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCH
Confidence            34445578899999999999999999985 2 46999999985

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.59  E-value=5.2e-05  Score=54.85  Aligned_cols=33  Identities=18%  Similarity=0.076  Sum_probs=29.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+|||||||+|..+..+++.   +.+++++|+++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~  139 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSS  139 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCH
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCH
Confidence            5679999999999999999985   56999999974

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.57  E-value=0.00011  Score=52.08  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=30.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .++.+|||||||+|..+..+++..+ +.+++.+|+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~  215 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM  215 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC
Confidence            4678999999999999999999987 689999996

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.57  E-value=6.4e-05  Score=52.86  Aligned_cols=33  Identities=15%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ++.+|||||||+|..+..+++..| +.+++.+|+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  201 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL  201 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC
Confidence            467999999999999999999998 789999997

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.57  E-value=5.7e-05  Score=55.99  Aligned_cols=32  Identities=6%  Similarity=0.097  Sum_probs=29.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++|||+|||+|+.++++|+.   .++|+++|+|+
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~  125 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERND  125 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCH
Confidence            789999999999999999986   57999999985

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.57  E-value=0.00015  Score=52.23  Aligned_cols=44  Identities=18%  Similarity=0.078  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++...+....  .+++|||+|||+|..++.+|+.   .++|+++|+++
T Consensus       200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~  245 (369)
T 3bt7_A          200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAK  245 (369)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCH
T ss_pred             HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCH
Confidence            34444444433  3579999999999999999984   46999999985

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.56  E-value=6.5e-05  Score=49.68  Aligned_cols=39  Identities=21%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+..+.+..++.+|||||||+|..+..+++.       +++|+++
T Consensus        37 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~   75 (219)
T 1vlm_A           37 SELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSE   75 (219)
T ss_dssp             HHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCH
T ss_pred             HHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCH
Confidence            34455566667899999999999999888754       8888764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.54  E-value=0.00011  Score=51.55  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=29.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+|||||||+|..+..+++..| +.+++++|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  199 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR  199 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc
Confidence            8999999999999999999987 789999998

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.54  E-value=9e-05  Score=52.44  Aligned_cols=50  Identities=10%  Similarity=0.227  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHh----cCCCeEEEEcccc--cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL----INAKNTMEIGVYT--GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~----~~~~~vLEiGt~~--G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...-.|+...++.    .+.++|||||||+  +-.+..+++...++++|+.+|.|+
T Consensus        60 ~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp  115 (277)
T 3giw_A           60 RANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP  115 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCCh
Confidence            3445666665553    3567999999997  334555655443389999999985

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.53  E-value=0.00011  Score=52.08  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=29.4

Q ss_pred             hcCCCeEEEEcccc------cHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           52 LINAKNTMEIGVYT------GYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        52 ~~~~~~vLEiGt~~------G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ..+..+|||+|||+      |.  ..+++.++++++|+++|+++.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            35677999999955      55  666778887799999999874

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.52  E-value=5.5e-05  Score=53.34  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=25.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|||||||+|..+..++.. + .++|+++|+++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~GiD~S~   81 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-E-IALLVATDPDA   81 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-T-CSEEEEEESCH
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-C-CCeEEEEECCH
Confidence            3679999999999755444442 2 57999999985

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.52  E-value=0.00013  Score=52.38  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .++.+|||||||+|..+..+++..| +.+++.+|+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  234 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER  234 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC
Confidence            4678999999999999999999988 789999997

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.49  E-value=0.00019  Score=56.12  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++...-..+....++++|||+|||+|..++.+|+. + ..+|+++|+|+
T Consensus       526 d~r~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~aVD~s~  572 (703)
T 3v97_A          526 DHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLG-G-ARSTTTVDMSR  572 (703)
T ss_dssp             GGHHHHHHHHHHCTTCEEEEESCTTCHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             cHHHHHHHHHHhcCCCcEEEeeechhHHHHHHHHC-C-CCEEEEEeCCH
Confidence            34444445556678999999999999999999984 2 46799999985

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.49  E-value=1.7e-05  Score=56.35  Aligned_cols=36  Identities=0%  Similarity=-0.271  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..|.+|||||||+|-.++.++...| ..+++++|+|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~  166 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDA  166 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCH
Confidence            4699999999999999999998665 89999999985

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.49  E-value=5.6e-05  Score=52.25  Aligned_cols=35  Identities=14%  Similarity=0.075  Sum_probs=25.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhh----CCCCCEE--EEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALA----IPDDGKV--QWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~----~~~~~~v--~~ie~~~   89 (90)
                      ++.+|||||||+|..+..+++.    .+ +.+|  +++|+++
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~   92 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSA   92 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCH
Confidence            4569999999999877654433    34 5655  9999874

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.47  E-value=6e-05  Score=54.50  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+... +.++|||+|||+|..++.+|+.   ..+|+++|+++
T Consensus       204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~  241 (382)
T 1wxx_A          204 YMERF-RGERALDVFSYAGGFALHLALG---FREVVAVDSSA  241 (382)
T ss_dssp             HGGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCH
T ss_pred             HHHhc-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCH
Confidence            34445 7789999999999999999997   57999999975

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.47  E-value=0.00011  Score=52.15  Aligned_cols=35  Identities=14%  Similarity=0.072  Sum_probs=31.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+..+|||||||+|..+..+++..| +.+++.+|++
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~  217 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRA  217 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECH
T ss_pred             cCCceEEEECCccCHHHHHHHHHCC-CCEEEEecCH
Confidence            4577999999999999999999998 7889999864

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.45  E-value=0.00043  Score=48.50  Aligned_cols=36  Identities=17%  Similarity=-0.027  Sum_probs=28.3

Q ss_pred             CCCeEEEEcccccH----HHHHHHhhCCC---CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGY----SLLVTALAIPD---DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~----sal~la~~~~~---~~~v~~ie~~~   89 (90)
                      ++.+|+++|||||.    .++.+++.++.   +.+|+++|+|+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~  147 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT  147 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH
Confidence            45799999999998    46667776553   35999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.44  E-value=0.00027  Score=50.21  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=31.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ..+..+|||||||+|..+..+++..| +.+++.+|+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~  225 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ  225 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc
Confidence            34678999999999999999999998 789999997

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.43  E-value=2.3e-05  Score=53.64  Aligned_cols=35  Identities=9%  Similarity=0.069  Sum_probs=26.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++++|||||||+|..++.++.. + ..+|+++|+++
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~-~-~~~v~g~D~s~   88 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD-S-FQDITLSDFTD   88 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-T-EEEEEEEESCH
T ss_pred             CCCceEEEeCCCccHHHHHHHHh-h-hcceeeccccH
Confidence            35679999999999776665543 1 24799999985

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.40  E-value=0.00018  Score=51.49  Aligned_cols=34  Identities=15%  Similarity=0.047  Sum_probs=30.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .++.+|||||||+|..+..+++..| +.+++.+|+
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~  241 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL  241 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh
Confidence            3578999999999999999999988 789999996

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.36  E-value=0.00013  Score=51.77  Aligned_cols=43  Identities=9%  Similarity=0.046  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           41 DEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        41 ~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ...++...+-+  ..+.++|||||||+|..+..+++.    ++|+++|+
T Consensus        67 ~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~  111 (305)
T 2p41_A           67 GSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKG  111 (305)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEec
Confidence            33444443332  234579999999999999999986    67999998

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.35  E-value=0.00016  Score=52.05  Aligned_cols=34  Identities=9%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++++||||| |+|..++.+++.-+ +++|+++|+++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~  205 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDE  205 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCH
Confidence            578999999 99999999998754 68999999975

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.09  E-value=0.00028  Score=51.88  Aligned_cols=36  Identities=8%  Similarity=-0.108  Sum_probs=31.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+|||++||+|..++.+|+..+..++|+++|+|+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~   87 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISS   87 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCH
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCH
Confidence            468999999999999999999876337999999985

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.09  E-value=0.001  Score=48.34  Aligned_cols=52  Identities=8%  Similarity=-0.032  Sum_probs=37.0

Q ss_pred             cCCHHHHHHHHHHHHhcC------CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLIN------AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~------~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++....=+-..+...+      ...|||||.|.|..|..|++... ..+|+++|+|+
T Consensus        35 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~   92 (353)
T 1i4w_A           35 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRS   92 (353)
T ss_dssp             BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCH
T ss_pred             cCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCH
Confidence            345554433333343332      47899999999999999998654 46899999984

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.02  E-value=0.00033  Score=51.60  Aligned_cols=53  Identities=13%  Similarity=0.035  Sum_probs=39.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCC------------CCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIP------------DDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~------------~~~~v~~ie~~~   89 (90)
                      ..++...+++..++......+|+|.|||+|...+.+++.+.            ...+++++|+++
T Consensus       154 yTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~  218 (445)
T 2okc_A          154 FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP  218 (445)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH
T ss_pred             cCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCH
Confidence            34455555655555555567999999999999999988752            146799999985

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.91  E-value=0.0009  Score=49.05  Aligned_cols=38  Identities=13%  Similarity=0.139  Sum_probs=32.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHH-hhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTA-LAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la-~~~~~~~~v~~ie~~~   89 (90)
                      ..+...|+|||++.|..++.++ +..++.++|+++|.+|
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p  262 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR  262 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            3567899999999999999999 5566458999999986

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.84  E-value=0.0069  Score=48.71  Aligned_cols=72  Identities=7%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHhC--CCccccCCHHHHHHHHHHHHh------cCCCeEEEEcccccHHHHHHHhhCCC--CCEEEEEec
Q 044836           18 HECLKELRELTEKH--PQNFMFSAPDEAQFLSMLLKL------INAKNTMEIGVYTGYSLLVTALAIPD--DGKVQWMNT   87 (90)
Q Consensus        18 ~~~l~~l~~~a~~~--~~p~m~~~~~~~~ll~~l~~~------~~~~~vLEiGt~~G~sal~la~~~~~--~~~v~~ie~   87 (90)
                      ++....+.+++.+.  .......+++.+.++..++..      ....+|||.|||+|...+.+++.++.  ..+++++|+
T Consensus       277 DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEI  356 (878)
T 3s1s_A          277 DELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDI  356 (878)
T ss_dssp             HHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECS
T ss_pred             HHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEEC
Confidence            44445556665432  222334567778887777332      13669999999999999999998862  468999999


Q ss_pred             CC
Q 044836           88 NL   89 (90)
Q Consensus        88 ~~   89 (90)
                      ++
T Consensus       357 Dp  358 (878)
T 3s1s_A          357 ET  358 (878)
T ss_dssp             CG
T ss_pred             CH
Confidence            86

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.79  E-value=0.0021  Score=44.88  Aligned_cols=43  Identities=12%  Similarity=0.076  Sum_probs=33.4

Q ss_pred             HHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++..++..  .+...|||++||+|..++..++.   +.+++++|+++
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~  267 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVP  267 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCH
Confidence            455555554  36779999999999988887763   57999999985

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=96.67  E-value=0.0024  Score=45.59  Aligned_cols=34  Identities=12%  Similarity=-0.012  Sum_probs=30.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+.++|||||||+|..+..+++..| +.+++..|.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl  211 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI  211 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC
Confidence            4678999999999999999999999 778888775

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.38  E-value=0.0026  Score=48.26  Aligned_cols=53  Identities=11%  Similarity=-0.033  Sum_probs=38.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCC-----------------CEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDD-----------------GKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~-----------------~~v~~ie~~~   89 (90)
                      ..++....++..++......+|+|.+||+|...+.+++.+.+.                 ..++++|+++
T Consensus       152 yTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~  221 (541)
T 2ar0_A          152 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP  221 (541)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred             eCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH
Confidence            3445555665555555556799999999999999888876432                 3799999985

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.24  E-value=0.014  Score=44.51  Aligned_cols=54  Identities=11%  Similarity=0.019  Sum_probs=43.4

Q ss_pred             ccCCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCC--CCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPD--DGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~--~~~v~~ie~~~   89 (90)
                      ...++....++..++..    ....+|+|.+||+|...+.+++.+..  ...++++|+++
T Consensus       199 fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~  258 (542)
T 3lkd_A          199 FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNT  258 (542)
T ss_dssp             CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCH
T ss_pred             ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcH
Confidence            35667778888877773    45679999999999999999988753  57899999985

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.24  E-value=0.0029  Score=46.05  Aligned_cols=25  Identities=12%  Similarity=0.011  Sum_probs=20.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAI   76 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~   76 (90)
                      ..+..+|||+|||+|..++..|...
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~  217 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIG  217 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999988887763

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.22  E-value=0.0038  Score=45.63  Aligned_cols=29  Identities=14%  Similarity=-0.016  Sum_probs=21.8

Q ss_pred             HHHHhcCCCeEEEEcccccHHHHHHHhhC
Q 044836           48 MLLKLINAKNTMEIGVYTGYSLLVTALAI   76 (90)
Q Consensus        48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~   76 (90)
                      .++...+...|||.+||+|..++..|...
T Consensus       195 ~l~~~~~~~~vlDp~CGSGt~~ieaa~~~  223 (393)
T 3k0b_A          195 LLTSWHPDRPFYDPVCGSGTIPIEAALIG  223 (393)
T ss_dssp             HHSCCCTTSCEEETTCTTSHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEEcCCCCCHHHHHHHHHh
Confidence            33444567799999999999987777653

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.04  E-value=0.0097  Score=42.30  Aligned_cols=37  Identities=16%  Similarity=0.038  Sum_probs=32.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+|++||-||-|.|..+..+.+.-+ ..+|+.+|+|+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~  117 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDA  117 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCH
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCH
Confidence            35899999999999999999988755 67999999986

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=95.99  E-value=0.003  Score=49.98  Aligned_cols=35  Identities=11%  Similarity=-0.171  Sum_probs=25.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhC---C---------CCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAI---P---------DDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~---~---------~~~~v~~ie~~~   89 (90)
                      .+.||+||||+|......+++.   +         ...+|++||.|+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp  456 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP  456 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence            5689999999999964333222   1         135999999875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.96  E-value=0.0095  Score=43.40  Aligned_cols=38  Identities=5%  Similarity=0.017  Sum_probs=34.3

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++|..+|.|.-|..+++.++++|+|+++|.|+
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp   92 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDP   92 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence            34567999999999999999999998899999999986

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=95.83  E-value=0.011  Score=41.95  Aligned_cols=36  Identities=6%  Similarity=-0.102  Sum_probs=32.0

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+...+||.+||.|.-|..|++.   +++|+++|.|+
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp   54 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDP   54 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCH
Confidence            3456779999999999999999997   68999999986

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.76  E-value=0.014  Score=42.85  Aligned_cols=35  Identities=14%  Similarity=0.051  Sum_probs=30.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||+|++.|.-|..+++.   +++|++||+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~  243 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP  243 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh
Confidence            457889999999999999999875   68999999764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.74  E-value=0.0064  Score=47.37  Aligned_cols=36  Identities=22%  Similarity=0.084  Sum_probs=25.7

Q ss_pred             CCCeEEEEcccccHH---HHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYS---LLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~s---al~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.||+||||+|..   ++..++......+|++||.|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp  395 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP  395 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            345799999999988   444444433234899999875

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.68  E-value=0.011  Score=43.19  Aligned_cols=34  Identities=15%  Similarity=0.056  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAI   76 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~   76 (90)
                      ++.+-.++...+...+||.+||+|...+..|...
T Consensus       183 Aaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a  216 (384)
T 3ldg_A          183 AAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIG  216 (384)
T ss_dssp             HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHh
Confidence            3333333444567799999999999888777543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=95.50  E-value=0.012  Score=44.79  Aligned_cols=52  Identities=10%  Similarity=0.073  Sum_probs=37.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC--------------CCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD--------------DGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~--------------~~~v~~ie~~~   89 (90)
                      ..++...+++..++...+ .+|+|.+||+|...+..++.+.+              ...++++|+++
T Consensus       228 yTP~~Vv~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~  293 (544)
T 3khk_A          228 YTPKSIVTLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP  293 (544)
T ss_dssp             CCCHHHHHHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCH
T ss_pred             eCCHHHHHHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCH
Confidence            456676777666654433 39999999999888877665431              35899999885

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.11  E-value=0.037  Score=38.58  Aligned_cols=35  Identities=23%  Similarity=0.065  Sum_probs=28.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhh------CCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALA------IPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~------~~~~~~v~~ie~   87 (90)
                      .-|..|+|+|++.|.|++.+|..      .+.+.+|+.+|.
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDT  108 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDT  108 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEEC
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence            45789999999999999998763      123689999994

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=94.64  E-value=0.026  Score=41.00  Aligned_cols=46  Identities=9%  Similarity=-0.050  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++...+..+|||+.++.|.-|+.||+.++ +++|+++|+++
T Consensus       137 S~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~  182 (359)
T 4fzv_A          137 SLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSP  182 (359)
T ss_dssp             GHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCH
T ss_pred             HHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCH
Confidence            34555555667778999999999999999998765 78999999874

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.62  E-value=0.069  Score=36.40  Aligned_cols=43  Identities=7%  Similarity=0.069  Sum_probs=32.7

Q ss_pred             HHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +|+..+++.  .+...|||..||+|..++...+.   +.+++++|+++
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~  244 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNA  244 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCH
Confidence            455555554  36679999999999977776653   57999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=93.73  E-value=0.05  Score=42.50  Aligned_cols=26  Identities=12%  Similarity=0.011  Sum_probs=20.5

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhh
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALA   75 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~   75 (90)
                      +...+...+||.+||+|...+..|..
T Consensus       186 ~~~~~~~~llDP~CGSGt~lIeAa~~  211 (703)
T 3v97_A          186 SGWQPGTPLLDPMCGSGTLLIEAAML  211 (703)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             hCCCCCCeEEecCCCCcHHHHHHHHH
Confidence            33345679999999999998877764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.49  E-value=0.065  Score=37.88  Aligned_cols=49  Identities=10%  Similarity=-0.044  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           38 SAPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+....+|+...-+.  .+..+|||+||+.|.-+-+.++..+ .++++++|+
T Consensus        56 rSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dV  106 (277)
T 3evf_A           56 VSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTL  106 (277)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECC
T ss_pred             cccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEE
Confidence            345666777765552  3566999999999999998887655 456666664

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.37  E-value=0.1  Score=38.30  Aligned_cols=35  Identities=14%  Similarity=0.065  Sum_probs=30.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||-||-|.|..+..+.+. + ..+|+.+|+|+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp  238 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQ  238 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCH
Confidence            36899999999999999888875 5 47999999986

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.36  E-value=0.069  Score=37.85  Aligned_cols=50  Identities=14%  Similarity=-0.009  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           38 SAPDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        38 ~~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+....+|+...-+  +.+..+|||+||+.|.-+-+.++..+ ...|+++|+.
T Consensus        72 rSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG  123 (282)
T 3gcz_A           72 VSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLG  123 (282)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCC
T ss_pred             ecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEec
Confidence            34566677765444  34666999999999999999887665 5677787763

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=93.36  E-value=0.033  Score=42.84  Aligned_cols=36  Identities=14%  Similarity=-0.001  Sum_probs=28.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-------C----CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIP-------D----DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~-------~----~~~v~~ie~~~   89 (90)
                      ++-+|+|+|.|+|++.+.+.+...       +    .-+++++|..|
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p  104 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYP  104 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCC
Confidence            456999999999999999887641       1    14789999855

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.27  E-value=0.21  Score=37.26  Aligned_cols=38  Identities=16%  Similarity=0.045  Sum_probs=30.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC----CCEEEEEecCCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD----DGKVQWMNTNLY   90 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~----~~~v~~ie~~~~   90 (90)
                      .++-+|+|+|.|.|..+.-+...+..    ..+++.||+|+.
T Consensus       136 ~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~  177 (432)
T 4f3n_A          136 SGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE  177 (432)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS
T ss_pred             cCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH
Confidence            45679999999999998888776542    348999999874

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=91.85  E-value=0.14  Score=35.88  Aligned_cols=50  Identities=12%  Similarity=0.048  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           38 SAPDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        38 ~~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+....+|....-+  +....+|||+||+.|--+-+.+...+ ..+|+++|+-
T Consensus        60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG  111 (267)
T 3p8z_A           60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKG  111 (267)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCC
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecC
Confidence            34566666665443  34666999999999999998888766 5689999974

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=91.68  E-value=0.21  Score=35.30  Aligned_cols=36  Identities=14%  Similarity=0.046  Sum_probs=24.6

Q ss_pred             CCeEEEEccccc-HHHHHHHhhCCCCCEEEEEecCCC
Q 044836           55 AKNTMEIGVYTG-YSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        55 ~~~vLEiGt~~G-~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      +|||+-||.|.+ ++++.-.+....+.+|+-||.+++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            689999999864 443332233334689999998764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=91.64  E-value=0.25  Score=37.37  Aligned_cols=54  Identities=7%  Similarity=0.080  Sum_probs=41.2

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC------------CCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD------------DGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~------------~~~v~~ie~~~   89 (90)
                      ...++...+++..++......+|+|-.||||..-+...+.+..            ...++++|+++
T Consensus       199 fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~  264 (530)
T 3ufb_A          199 FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKS  264 (530)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSH
T ss_pred             ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccH
Confidence            3556777888877777777779999999999988877765543            24689999874

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=91.43  E-value=0.12  Score=37.12  Aligned_cols=50  Identities=12%  Similarity=0.054  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           38 SAPDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        38 ~~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+....+|....-+  +....+||||||++|--+-+.+...+ ..+|+++|+-
T Consensus        76 ~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG  127 (321)
T 3lkz_A           76 VSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKG  127 (321)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCC
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcC
Confidence            34566777766544  23566999999999999998887765 5589999974

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=91.32  E-value=0.31  Score=35.31  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=25.9

Q ss_pred             CCCeEEEEcc------cccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           54 NAKNTMEIGV------YTGYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        54 ~~~~vLEiGt------~~G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ...+||++|.      .-|-  ..+.+..|.++.|+++|+++|
T Consensus       109 ~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~  149 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  149 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccc
Confidence            4569999995      6665  344555664579999999986

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=91.15  E-value=0.1  Score=38.04  Aligned_cols=20  Identities=10%  Similarity=0.165  Sum_probs=17.3

Q ss_pred             CCeEEEEcccccHHHHHHHh
Q 044836           55 AKNTMEIGVYTGYSLLVTAL   74 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~   74 (90)
                      +-+|+|+||++|..|+.+++
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~   72 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIID   72 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHH
Confidence            56899999999999998843

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=90.51  E-value=0.22  Score=35.56  Aligned_cols=49  Identities=12%  Similarity=-0.005  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           39 APDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        39 ~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +...-+|+...-+  ..+.++|||+||+.|.-+-.+++..+ ...|+++|+.
T Consensus        64 SRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg  114 (300)
T 3eld_A           64 SRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLG  114 (300)
T ss_dssp             STTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCC
T ss_pred             chHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEec
Confidence            3455666665544  23577999999999999999998655 4567777763

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.40  E-value=0.48  Score=33.85  Aligned_cols=39  Identities=13%  Similarity=-0.035  Sum_probs=31.2

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..+.++||.+|+|. |..++.+|+..+ ..+|+++|.++
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~  220 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNP  220 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCH
Confidence            4556788999999875 888999999875 34899998764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.97  E-value=0.76  Score=32.27  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=30.0

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||.+|+|. |..++.+|+.++ ..+|+++|.++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~  206 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSA  206 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCH
Confidence            445778999999874 888899999876 34899998764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=87.94  E-value=0.6  Score=33.32  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             CCeEEEEcccccHHHHHHHh---hCCCCCEE--EEEecC
Q 044836           55 AKNTMEIGVYTGYSLLVTAL---AIPDDGKV--QWMNTN   88 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~---~~~~~~~v--~~ie~~   88 (90)
                      .-+|||+|-|||+.++....   ..++..++  +++|.+
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~  135 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKE  135 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESS
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHH
Confidence            34899999999998754332   22335554  666643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=87.93  E-value=0.36  Score=34.12  Aligned_cols=38  Identities=18%  Similarity=0.118  Sum_probs=29.6

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||.+|+|. |..++.+|+.++ ..+|+++|.++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~  225 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVE  225 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCH
Confidence            345678999999875 888899999875 33799998763

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=87.77  E-value=0.27  Score=36.04  Aligned_cols=21  Identities=14%  Similarity=0.162  Sum_probs=19.1

Q ss_pred             CCeEEEEcccccHHHHHHHhh
Q 044836           55 AKNTMEIGVYTGYSLLVTALA   75 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~   75 (90)
                      +-+|+|+||++|..|+.+.+.
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            568999999999999998877

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=87.54  E-value=0.086  Score=37.13  Aligned_cols=48  Identities=10%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             CHHHHHHHHHHHH--hcCCCeEEEEcccccHHHHHHHhh--CCC-CCEEEEEe
Q 044836           39 APDEAQFLSMLLK--LINAKNTMEIGVYTGYSLLVTALA--IPD-DGKVQWMN   86 (90)
Q Consensus        39 ~~~~~~ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~--~~~-~~~v~~ie   86 (90)
                      +....+|+..--+  +.+..+|||+||+-|-=+.+.++.  +++ .|.++++|
T Consensus        56 SRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D  108 (269)
T 2px2_A           56 SRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP  108 (269)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST
T ss_pred             cHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc
Confidence            4566666665333  245779999999999999999887  432 46777777

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=87.10  E-value=0.98  Score=33.10  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=26.9

Q ss_pred             eEEEEcccccHHHHHHHhhCC------CCCEEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIP------DDGKVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~------~~~~v~~ie~~~   89 (90)
                      +|+|+|.|.|..+.-+.+.+.      +..+++.||+++
T Consensus        83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp  121 (387)
T 1zkd_A           83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP  121 (387)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred             EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence            799999999999988877653      134899999886

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=86.72  E-value=0.65  Score=33.46  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=23.6

Q ss_pred             CCeEEEEcccccH-HHHHHHhhCCCCCEEEEEecCCC
Q 044836           55 AKNTMEIGVYTGY-SLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        55 ~~~vLEiGt~~G~-sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      .|+|+-||.|.|- +++.-.+...++.+|+-||.++|
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            3689999997643 33322222333789999998875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.62  E-value=1.2  Score=31.57  Aligned_cols=39  Identities=13%  Similarity=-0.010  Sum_probs=30.3

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|+|. |..++.+|++++ ..+|+++|.++
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~  220 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNP  220 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCH
Confidence            3556778999999754 888899999876 34799998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=86.56  E-value=0.84  Score=34.12  Aligned_cols=59  Identities=10%  Similarity=0.094  Sum_probs=25.1

Q ss_pred             CCccccCCHHHHHHHHHH--HHhcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEecCCC
Q 044836           32 PQNFMFSAPDEAQFLSML--LKLINAKNTMEIGVYTG-YSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        32 ~~p~m~~~~~~~~ll~~l--~~~~~~~~vLEiGt~~G-~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      +...|...|..|+-+...  ......++|+-||.|.+ .+++.-++....+.+|+-+|.+++
T Consensus        11 ~~~~~~~np~~g~e~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           11 GMASMTGGQQMGRTLYDDDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             -----------------------CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cccccccchhcCccccCcccCCcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            334456667667665542  23345679999999754 343333333333679999998764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=85.91  E-value=0.94  Score=31.47  Aligned_cols=37  Identities=14%  Similarity=-0.003  Sum_probs=30.0

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+|. |..++.+|+..+  ++|+++|.++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~  200 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDD  200 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence            445778999999864 999999999875  5999998763

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=85.81  E-value=1.3  Score=32.95  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY   90 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~   90 (90)
                      ++|+-||.  |+.++.+|+.+.. +.+|+-||.++|
T Consensus        43 prVVIIGg--G~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           43 PNVLILGS--GWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CEEEEECS--SHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCEEEECC--cHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            48999998  5667778888865 579999998875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=85.56  E-value=0.78  Score=31.94  Aligned_cols=38  Identities=18%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++||-+|+|. |..++.+|+..+ ..+|+++|.++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~  206 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDD  206 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCH
Confidence            456788999999764 888899999885 67999998764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=85.49  E-value=1.8  Score=30.16  Aligned_cols=37  Identities=19%  Similarity=0.134  Sum_probs=30.2

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+|. |..++.+|+..+  ++|++++.++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~  210 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNE  210 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence            456788999999865 888889999875  5899998765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.25  E-value=1.1  Score=31.42  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=30.1

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|+|. |..++.+|+..+ ..+|+++|.++
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~  201 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRK  201 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCH
Confidence            3456788999999765 888888998875 34899998763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=85.07  E-value=0.38  Score=30.73  Aligned_cols=37  Identities=11%  Similarity=0.016  Sum_probs=27.6

Q ss_pred             HhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||.+|  .|.|..++.+++..+  ++|++++.++
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~   73 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSD   73 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCH
Confidence            345678999999  467777777777654  6899988763

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=84.44  E-value=1.8  Score=30.26  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=29.1

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|+|. |..++.+|+.++  ++|++++.++
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~  202 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSP  202 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCH
Confidence            3456778999999764 788888888875  5699888653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=84.39  E-value=1.1  Score=32.66  Aligned_cols=60  Identities=13%  Similarity=-0.012  Sum_probs=23.1

Q ss_pred             CCCccccCCHHHHHHHHHHHHhcC--CCeEEEEccccc-HHHHHHHhhCCCCCEEEEEecCCC
Q 044836           31 HPQNFMFSAPDEAQFLSMLLKLIN--AKNTMEIGVYTG-YSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        31 ~~~p~m~~~~~~~~ll~~l~~~~~--~~~vLEiGt~~G-~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      |+...|.+.|..++-...-....+  .++|+-||.|.+ ++++.-+.....+.+|+-+|.+++
T Consensus        10 ~~~~~~~~np~~g~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           10 HGMASMTGGQQMGRTLYDDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             ---------------------------CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cccccccchhhhcccccCCCCcCccccceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            445566777777665433111111  258999999864 444433333323679999998753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=84.35  E-value=1  Score=31.69  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             hcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++||-+|+|. |..++.+|+.++ ..+|++++.++
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~  226 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK  226 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence            45678999999764 778888888875 33899998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=84.28  E-value=1.1  Score=31.66  Aligned_cols=37  Identities=8%  Similarity=0.103  Sum_probs=28.4

Q ss_pred             hcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++||.+|+|. |..++.+|+.++ ..+|++++.++
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~  227 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNP  227 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCH
Confidence            45678999999753 778888998875 33899998764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=84.04  E-value=1.4  Score=31.21  Aligned_cols=37  Identities=19%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||.+|+|. |..++.+|+..+  ++|++++.++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~  228 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSE  228 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            445678999999874 888889998875  6799998764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=84.02  E-value=1.5  Score=31.09  Aligned_cols=39  Identities=10%  Similarity=-0.051  Sum_probs=30.4

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|+|. |..++.+|+..+ ..+|++++.++
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~  217 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQA  217 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCH
Confidence            4556788999999865 888889999876 34899988653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=84.02  E-value=1  Score=31.78  Aligned_cols=37  Identities=11%  Similarity=0.139  Sum_probs=28.6

Q ss_pred             hcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++||-+|+| .|..++.+|+.++ ..+|+++|.++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~  230 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDING  230 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence            3467899999976 4788889999875 34899998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=83.92  E-value=0.83  Score=32.23  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+| .|..++.+|++++ ..+|+++|.++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~  226 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHK  226 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCH
Confidence            34567899999975 3788888898875 34899998764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=83.36  E-value=2.8  Score=28.96  Aligned_cols=38  Identities=16%  Similarity=0.040  Sum_probs=28.3

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++||-+|+|. |..++.+++.+. .++|+++|.++
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~  198 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQ  198 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCH
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcH
Confidence            345678999999875 456667777666 68999999764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=82.58  E-value=0.9  Score=31.61  Aligned_cols=37  Identities=8%  Similarity=-0.076  Sum_probs=29.5

Q ss_pred             HhcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY--TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~--~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|++  .|..++.+|+..+  ++|++++.++
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~  179 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNN  179 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSS
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCH
Confidence            44567899999975  7888888888765  6999998765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=82.51  E-value=2.7  Score=29.92  Aligned_cols=63  Identities=19%  Similarity=0.170  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcC-----------------CCeEEEEc-ccccHHHHHHHhhCCCCCEE
Q 044836           21 LKELRELTEKHPQNFMFSAPDEAQFLSMLLKLIN-----------------AKNTMEIG-VYTGYSLLVTALAIPDDGKV   82 (90)
Q Consensus        21 l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~-----------------~~~vLEiG-t~~G~sal~la~~~~~~~~v   82 (90)
                      .+++.+.+++.++|.+.++..+.+++..+....+                 ++-||=.| +|+|=|++.++..-. +.++
T Consensus        93 peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~l  171 (314)
T 1ko7_A           93 PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHRL  171 (314)
T ss_dssp             CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred             CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence            3456677888899988888888888777654332                 55677777 899999988776533 4455


Q ss_pred             EE
Q 044836           83 QW   84 (90)
Q Consensus        83 ~~   84 (90)
                      ++
T Consensus       172 v~  173 (314)
T 1ko7_A          172 VA  173 (314)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=82.18  E-value=1.1  Score=30.96  Aligned_cols=38  Identities=13%  Similarity=-0.080  Sum_probs=30.0

Q ss_pred             HHhcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGV--YTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt--~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|+  +.|..++.+++..+  ++|++++.++
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~  184 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGA  184 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            34567889999997  67888888888765  5999998763

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.16  E-value=1.2  Score=27.38  Aligned_cols=35  Identities=17%  Similarity=0.063  Sum_probs=26.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ...++|+-+|+  |..+..+++.+.. +.+|+.+|.++
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCH
Confidence            45679999986  7777777776653 45899998864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=81.99  E-value=4.7  Score=24.33  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=28.3

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      +....+++|+-||+  |..+..+++.+.. +.+|+.+|.++
T Consensus        16 ~~~~~~~~v~iiG~--G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           16 VRKNGGNKILLVGN--GMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             HHHHCCCEEEEECC--SHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             HHhccCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            44445899999997  7788888888765 44688777753

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=81.92  E-value=0.3  Score=35.40  Aligned_cols=22  Identities=14%  Similarity=0.223  Sum_probs=18.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhh
Q 044836           54 NAKNTMEIGVYTGYSLLVTALA   75 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~   75 (90)
                      ++-+|+|+||++|..|+.+.+.
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~   72 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTE   72 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGT
T ss_pred             CceEEEecCCCCCcchHHHHHH
Confidence            3458999999999999887766

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=81.79  E-value=1  Score=31.69  Aligned_cols=37  Identities=16%  Similarity=-0.004  Sum_probs=29.0

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+|. |..++.+|+..+  ++|++++.++
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~  223 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSR  223 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCc
Confidence            345678999999765 888888888875  6899988763

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=81.79  E-value=1.9  Score=30.15  Aligned_cols=38  Identities=11%  Similarity=0.012  Sum_probs=28.6

Q ss_pred             HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+|. |..++.+|+.++ ..+|+++|.++
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~  214 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDE  214 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCH
Confidence            445788999999754 888889999875 33488888653

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=81.74  E-value=1.1  Score=31.46  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=28.0

Q ss_pred             hcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++||-+|+|. |..++.+|++++ ..+|++++.++
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~  225 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINK  225 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence            35678999999754 778888888875 33899998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=81.52  E-value=0.84  Score=32.29  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=29.7

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+| .|..++.+|+.++ ..+|+++|.++
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~  228 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDS  228 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence            34567899999986 4888889998876 34899999765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=81.50  E-value=0.92  Score=25.97  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=24.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCC--CEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDD--GKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~--~~v~~ie~~~   89 (90)
                      .++|+-+|+  |..+..+++.+...  .+|+.+|.++
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999998  77777777766543  4788888763

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=80.88  E-value=2.2  Score=29.88  Aligned_cols=37  Identities=11%  Similarity=-0.018  Sum_probs=29.1

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+| .|..++.+|+.++  ++|++++.++
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~  213 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSS  213 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCH
Confidence            45577899999964 5788888888865  6899998765

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=80.68  E-value=1.6  Score=31.62  Aligned_cols=34  Identities=6%  Similarity=0.132  Sum_probs=24.0

Q ss_pred             eEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCCC
Q 044836           57 NTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNLY   90 (90)
Q Consensus        57 ~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~~   90 (90)
                      ||+-||.|. |++++.-++.++.+.+|+-+|.+++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~   36 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   36 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            588899985 4555555555555788999997753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=80.55  E-value=2  Score=30.26  Aligned_cols=38  Identities=13%  Similarity=-0.100  Sum_probs=30.7

Q ss_pred             HHhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|  .+.|..++.+|+..+  ++|++++.++
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~  198 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSD  198 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSH
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCH
Confidence            3556788999999  678899999999875  6899988763

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.29  E-value=2.6  Score=31.08  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+|+-||+| .|..++.++.+++  ++|+.+|+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCH
Confidence            67899999998 5788888888886  6899999875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=80.05  E-value=1.6  Score=33.28  Aligned_cols=34  Identities=21%  Similarity=0.042  Sum_probs=25.6

Q ss_pred             CeEEEEcccccHHHHHHHhhC-------CC--C--CEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAI-------PD--D--GKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~-------~~--~--~~v~~ie~~~   89 (90)
                      -+|+|+|-|+|+..+...+..       |+  .  -+++++|..|
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p  112 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  112 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCC
Confidence            499999999999998887764       21  1  3588888743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	6e-25
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	7e-18
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	2e-13
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	1e-04

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 91.0 bits (225), Expect = 6e-25
 Identities = 61/79 (77%), Positives = 70/79 (88%)

Query: 4  ISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGV 63
          + QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGV
Sbjct: 9  LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 68

Query: 64 YTGYSLLVTALAIPDDGKV 82
          YTGYSLL TALAIP+DGK+
Sbjct: 69 YTGYSLLATALAIPEDGKI 87

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 7e-18
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 3  NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
           + QY+L  ++  REH  L+ LR LT + PQ       ++AQ L+ L +LI AK  +++G
Sbjct: 10 RLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLG 67

Query: 63 VYTGYSLLVTALAIPDDGKV 82
           +TGYS L  ALA+P DG+V
Sbjct: 68 TFTGYSALALALALPADGRV 87

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.6 bits (146), Expect = 2e-13
 Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 6  QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
          +Y+ +    P + + + E  +      +  M     + Q +  +++  +    +E+G Y 
Sbjct: 9  RYVQQNA-KPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYC 67

Query: 66 GYSLLVTALAIPDDGKV 82
          GYS +  A  +    ++
Sbjct: 68 GYSAVRMARLLQPGARL 84

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 36  MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTA---LAIPDDGKVQWMNTN 88
           M   PD       +L  +  +  +E+GVY G SL         +  D +V  ++ +
Sbjct: 62  MLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRD 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.94
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.93
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.87
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.13
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.09
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.06
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.03
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.0
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.98
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.96
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.9
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.87
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.81
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.78
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.76
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.76
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.71
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.69
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.68
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.67
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.65
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.58
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.52
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.51
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.51
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.5
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.5
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.49
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.45
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.44
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.42
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.39
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.39
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.33
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.33
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.3
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.26
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.23
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.21
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.21
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.2
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.19
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.18
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.17
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.15
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.12
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.1
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.09
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.08
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.08
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.04
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.03
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.01
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.01
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.94
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.92
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.91
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.89
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.84
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.82
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	97.82
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.82
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.79
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.78
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.76
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.49
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.43
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.42
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.29
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.26
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.23
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.16
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.06
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.99
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.97
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.94
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.84
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.53
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.51
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.43
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.25
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.24
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.24
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.06
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.93
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.85
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.78
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.68
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.63
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.53
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	95.32
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.23
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.1
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.0
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.87
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	94.63
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.46
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.78
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.53
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.26
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.01
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.95
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	92.84
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.41
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.08
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.5
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.4
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.9
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.26
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.57
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.53
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	88.15
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.07
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	87.98
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	87.74
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	87.67
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	87.51
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	87.41
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.38
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.17
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	86.78
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	86.76
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	86.53
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.42
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.12
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	86.07
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.05
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.98
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	84.81
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	84.81
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.52
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	83.93
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.9
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.16
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	82.93
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.54
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	81.32
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	81.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	81.07
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	80.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	80.15

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.94  E-value=9.2e-27  Score=159.79  Aligned_cols=89  Identities=71%  Similarity=1.020  Sum_probs=85.4

Q ss_pred             ChhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC
Q 044836            1 MINISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG   80 (90)
Q Consensus         1 ~~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~   80 (90)
                      .|.+++|+.+|++.|++++.++++|+++.++++|.|.++|++|+||++|++..+|++||||||++||||+|||+++|++|
T Consensus         6 ~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g   85 (227)
T d1susa1           6 SDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDG   85 (227)
T ss_dssp             CHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTC
T ss_pred             cHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCc
Confidence            37899999999887889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC
Q 044836           81 KVQWMNTNL   89 (90)
Q Consensus        81 ~v~~ie~~~   89 (90)
                      +|+|+|.++
T Consensus        86 ~v~tie~~~   94 (227)
T d1susa1          86 KILAMDINK   94 (227)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEEeccc
Confidence            999999987

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=152.81  Aligned_cols=86  Identities=40%  Similarity=0.616  Sum_probs=81.7

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      +++++|+.+|+  ++++++++++++.+.+++++.|.++|++|+||.+|++..+|++|||||||+||||+|||++++++|+
T Consensus         9 ~~l~~Y~~~~~--~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~   86 (219)
T d2avda1           9 SRLWQYLLSRS--MREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR   86 (219)
T ss_dssp             SHHHHHHHHTT--CCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHHHhC--CCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCce
Confidence            57999999997  5888999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|.++
T Consensus        87 i~tie~~~   94 (219)
T d2avda1          87 VVTCEVDA   94 (219)
T ss_dssp             EEEEESCS
T ss_pred             EEEEeech
Confidence            99999987

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=3.7e-22  Score=135.22  Aligned_cols=87  Identities=16%  Similarity=0.263  Sum_probs=77.5

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK   81 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~   81 (90)
                      .++++|+.+|+....+.++++.+++++.+..++ |.++|++|++|..+++..+|++|||||||+|+||++||++++++++
T Consensus         5 ~~~~~yv~~~~~~~~p~~vl~~~~~~~~~~~~~-m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~   83 (214)
T d2cl5a1           5 QRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGAR   83 (214)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCCC-CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCE
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCc-cccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccE
Confidence            478999999986222357899999999887665 7899999999999999999999999999999999999999998999


Q ss_pred             EEEEecCC
Q 044836           82 VQWMNTNL   89 (90)
Q Consensus        82 v~~ie~~~   89 (90)
                      |+++|+++
T Consensus        84 v~sid~~~   91 (214)
T d2cl5a1          84 LLTMEMNP   91 (214)
T ss_dssp             EEEEESCH
T ss_pred             EEEEeccH
Confidence            99999875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=8.6e-11  Score=78.24  Aligned_cols=52  Identities=23%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.|.....+-.++...+..+|||||||+||.+++||+.++++++|+++|+++
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~  110 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR  110 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecch
Confidence            3455444444556788899999999999999999999998899999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=77.70  Aligned_cols=52  Identities=25%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             CCHH-HHHHHHHHH-HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPD-EAQFLSMLL-KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~-~~~ll~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.|. .+++|+.|. ...++.+|||||||+||.|..||+.+++.++|+++|+++
T Consensus        58 s~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~  111 (224)
T d1i1na_          58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIK  111 (224)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH
T ss_pred             hhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCH
Confidence            3454 456666544 456788999999999999999999998899999999875

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.06  E-value=2.6e-10  Score=77.33  Aligned_cols=57  Identities=23%  Similarity=0.252  Sum_probs=47.8

Q ss_pred             CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhC---CCCCEEEEEecCC
Q 044836           32 PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAI---PDDGKVQWMNTNL   89 (90)
Q Consensus        32 ~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~---~~~~~v~~ie~~~   89 (90)
                      |.|++. .|....+++.++...+|++||||||+.|+|++++|+.+   +.+++|+++|+++
T Consensus        59 G~p~~k-~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~  118 (232)
T d2bm8a1          59 GLRMLK-DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL  118 (232)
T ss_dssp             TEECCS-CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC
T ss_pred             ceeccc-CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcCh
Confidence            445443 46677899999999999999999999999999998654   4589999999975

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=1e-10  Score=78.72  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=57.8

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHHhC----------CCc----cccCCH-HHHHHHHHHH-HhcCCCeEEEEcccc
Q 044836            2 INISQYILETTVYPREHECLKELRELTEKH----------PQN----FMFSAP-DEAQFLSMLL-KLINAKNTMEIGVYT   65 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~----------~~p----~m~~~~-~~~~ll~~l~-~~~~~~~vLEiGt~~   65 (90)
                      +++.+.+..... -..+.+++.+++.-++.          .+|    ...+.| -.+++|+.|. .+.+..+|||||||+
T Consensus        13 ~~lv~~l~~~gv-i~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGs   91 (223)
T d1r18a_          13 EDLIRQLKDHGV-IASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGS   91 (223)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTT
T ss_pred             HHHHHHHHHcCC-CCCHHHHHHHHhCCHHHcCCccccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCC
Confidence            345556665443 14566777776554432          222    123445 4566666653 567789999999999


Q ss_pred             cHHHHHHHhhCCC-----CCEEEEEecCC
Q 044836           66 GYSLLVTALAIPD-----DGKVQWMNTNL   89 (90)
Q Consensus        66 G~sal~la~~~~~-----~~~v~~ie~~~   89 (90)
                      ||.|..+|+.+++     +++|+++|+++
T Consensus        92 GY~ta~la~l~g~~g~~~~~~V~~iE~~~  120 (223)
T d1r18a_          92 GYLTACFYRYIKAKGVDADTRIVGIEHQA  120 (223)
T ss_dssp             SHHHHHHHHHHHHSCCCTTCEEEEEESCH
T ss_pred             CHHHHHHHHHhhhccCCcccEEEEEecCH
Confidence            9999999998754     35999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=4e-10  Score=77.72  Aligned_cols=51  Identities=18%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -|.-..++..++.+.++.+|||+|||+|+.|++||+++.++|+|+++|+++
T Consensus        81 ypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~  131 (264)
T d1i9ga_          81 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA  131 (264)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             chHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCH
Confidence            354556777779999999999999999999999999998899999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=7.9e-10  Score=76.04  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |.-..++..++.+.++.+|||+|||+|+.|+++|+.++++|+|+++|+++
T Consensus        89 pkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~  138 (266)
T d1o54a_          89 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE  138 (266)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH
T ss_pred             hHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCH
Confidence            44555777779999999999999999999999999998899999999985

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-09  Score=77.30  Aligned_cols=52  Identities=15%  Similarity=0.176  Sum_probs=44.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+++.+ ++-.++.+.++.+|||+|||+|+.|++||++++++|+|+++|+++
T Consensus        82 iypkD~~-~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~  133 (324)
T d2b25a1          82 TFPKDIN-MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK  133 (324)
T ss_dssp             CCHHHHH-HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH
T ss_pred             cccccHH-HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCH
Confidence            3445555 555558999999999999999999999999998899999999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=3.1e-10  Score=77.69  Aligned_cols=51  Identities=20%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++.+.++ ..+.+.++.+|||+|||+|+.|++||++++++|+|+++|+++
T Consensus        70 ypkD~~~Ii-~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e  120 (250)
T d1yb2a1          70 SEIDASYII-MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE  120 (250)
T ss_dssp             ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH
T ss_pred             CHHHHHHHH-HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCH
Confidence            345655444 447888999999999999999999999998899999999875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.87  E-value=2.7e-09  Score=71.43  Aligned_cols=51  Identities=18%  Similarity=0.235  Sum_probs=41.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|..-..+-.++...+..+|||||||+||+|..+|+.++  ++|+++|+++
T Consensus        61 is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~  111 (215)
T d1jg1a_          61 VSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIP  111 (215)
T ss_dssp             ECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCH
T ss_pred             hhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccH
Confidence            45676544444457889999999999999999999998764  7899999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.81  E-value=3.2e-09  Score=71.45  Aligned_cols=50  Identities=26%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|.....+-..+.+.+..+|||||||+||.|..||+.   .++|+++|+++
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~  102 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINE  102 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCH
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccH
Confidence            345655444445567889999999999999999999987   47899999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.80  E-value=3.3e-09  Score=67.05  Aligned_cols=47  Identities=11%  Similarity=-0.054  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .|.--+++.. ....++.+|||||||+|..+++||+.   +.+|+++|+|+
T Consensus         6 ~~~~~~~~~~-l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~   52 (201)
T d1pjza_           6 NKDLQQYWSS-LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSE   52 (201)
T ss_dssp             THHHHHHHHH-HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECH
T ss_pred             HHHHHHHHHH-cCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccH
Confidence            3544445555 35667889999999999999999986   78999999884

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=9.4e-09  Score=68.35  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++....|...+++.++++|||||||+|..+..+++..+  ++|+++|+++
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~   66 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSS   66 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCH
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEeccc
Confidence            3566677777777888999999999999999999998754  7999999985

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.76  E-value=7.1e-09  Score=66.90  Aligned_cols=55  Identities=16%  Similarity=0.012  Sum_probs=43.3

Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           31 HPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        31 ~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++|.+ ...+...++-..++..+..+|||||||+|+.++++|+.   .++|+++|+++
T Consensus        11 ~~~~~~-t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~   65 (186)
T d1l3ia_          11 PSVPGP-TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNP   65 (186)
T ss_dssp             TTSCCC-CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCH
T ss_pred             CCCCCC-ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCH
Confidence            345532 34556566666678889999999999999999999875   56999999985

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.76  E-value=3.8e-09  Score=69.06  Aligned_cols=45  Identities=16%  Similarity=0.094  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.++++.. +.+.+.++|||||||+|..+..+++.   .++|+++|+|+
T Consensus         3 ~~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~   47 (231)
T d1vl5a_           3 DLAKLMQI-AALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTE   47 (231)
T ss_dssp             CHHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCH
T ss_pred             hHHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCH
Confidence            45666766 78888999999999999999999876   46899999975

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=1.1e-08  Score=67.45  Aligned_cols=46  Identities=9%  Similarity=0.043  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+|...+.+.+..+|||||||+|..+..+++.   .++|+++|+++
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~   48 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATK   48 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCH
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCCh
Confidence            44567777788899999999999999999999986   36899999974

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.69  E-value=6.6e-09  Score=68.88  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+..+|||||||+|+.+..+|+.+| +++|+++|+++
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~   90 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSA   90 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCH
Confidence            45778999999999999999999998 68999999985

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.2e-07  Score=65.28  Aligned_cols=53  Identities=19%  Similarity=0.225  Sum_probs=43.7

Q ss_pred             ccCCHHHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.|++..++......  .++.+|||+|||+|+.++.+|...| +.+|+++|+++
T Consensus        88 lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~  142 (274)
T d2b3ta1          88 LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMP  142 (274)
T ss_dssp             CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSH
T ss_pred             cccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchh
Confidence            45668888777765544  3466899999999999999999998 78999999985

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.67  E-value=9.7e-09  Score=69.04  Aligned_cols=37  Identities=14%  Similarity=0.067  Sum_probs=33.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+..+|||||||+|+++..+|...| +|+|+++|+++
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~  108 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAP  108 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcH
Confidence            45678999999999999999999877 79999999986

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.65  E-value=5.4e-09  Score=71.42  Aligned_cols=39  Identities=21%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+|.+|||||||+|..+..+++..+++++|+++|+++
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~   62 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE   62 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCH
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecch
Confidence            457899999999999999999999998788999999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.58  E-value=1.6e-08  Score=68.02  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++.+|||+|||+|+.+..+|..++++|+|+++|+++
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~  108 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP  108 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcH
Confidence            45788999999999999999999998899999999985

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.8e-08  Score=63.74  Aligned_cols=49  Identities=10%  Similarity=-0.156  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.|.-.+++..+....++.+|||+|||+|..+.+||+.   +.+|++||+++
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~   77 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISE   77 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCH
Confidence            34555556666666678889999999999999999984   67999999985

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.51  E-value=1.2e-07  Score=62.01  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIP-DDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~-~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+++.+. ++.+|+++|+++
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~   75 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ   75 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCH
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCH
Confidence            4667999999999999999999875 378999999985

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.51  E-value=7.3e-08  Score=62.13  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.. ++..++.+|||||||+|..+.++++.   +.+|+++|+++
T Consensus        22 ~~~~-~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~   62 (198)
T d2i6ga1          22 VLAA-AKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNP   62 (198)
T ss_dssp             HHHH-HTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHH-cccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcH
Confidence            4443 56678889999999999999999985   56899999985

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.8e-08  Score=65.89  Aligned_cols=44  Identities=11%  Similarity=0.047  Sum_probs=34.2

Q ss_pred             HHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++..++..  .++++|||||||+|+++.++++..+  ++|++||+|+
T Consensus        41 ~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~   86 (229)
T d1zx0a1          41 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECND   86 (229)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCH
T ss_pred             HHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCH
Confidence            344444443  3567999999999999999998643  6899999985

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=1.6e-07  Score=63.91  Aligned_cols=47  Identities=13%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      |.+.-.|..+.+. .++++|||+|||+|..++++++.   +++|+++|+|+
T Consensus       105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~  152 (254)
T d2nxca1         105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDP  152 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCG
T ss_pred             chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECCh
Confidence            3455566666554 56789999999999999988763   57999999987

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1.2e-07  Score=64.47  Aligned_cols=47  Identities=13%  Similarity=0.135  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .....++..+++..+.++|||||||+|..+..||+.   +.+|+++|+++
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~   88 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASD   88 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCch
Confidence            344567777788888999999999999999999985   56999999985

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.45  E-value=1.6e-07  Score=61.71  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             HHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+.+.   .++++|||||||+|..++.|++.   +.+|+++|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~   73 (251)
T d1wzna1          27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHE   73 (251)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCH
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeecc
Confidence            3345444432   45679999999999999999985   57899999985

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=8.8e-08  Score=62.42  Aligned_cols=34  Identities=18%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~   74 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSK   74 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCH
T ss_pred             CCCCEEEEECCCCchhccccccc---ceEEEEeeccc
Confidence            36789999999999999999975   57999999985

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.42  E-value=1e-07  Score=61.54  Aligned_cols=44  Identities=11%  Similarity=0.106  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++|...+...+.++|||||||+|+.++.+|+..   .+|+++|+|+
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~   84 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINR   84 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCH
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeecc
Confidence            3455444566788999999999999999999864   5799999985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.39  E-value=1.1e-07  Score=62.47  Aligned_cols=42  Identities=10%  Similarity=0.143  Sum_probs=35.1

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++.+.+..++++|||||||+|..+..+++.   +.+|+++|+++
T Consensus        11 ~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~   52 (225)
T d2p7ia1          11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASE   52 (225)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCH
T ss_pred             HHHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcH
Confidence            4456667788999999999999999999875   45799999985

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.39  E-value=3.5e-07  Score=58.77  Aligned_cols=34  Identities=6%  Similarity=-0.077  Sum_probs=29.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..+++.   +.+|+++|+|+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~   69 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISE   69 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccc
Confidence            45569999999999999999974   67999999985

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.33  E-value=3.2e-07  Score=60.54  Aligned_cols=46  Identities=7%  Similarity=-0.095  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++..++..  .++++|||||||+|..+..+++.   +.+|+++|.|+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~   69 (246)
T d1y8ca_          22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQ   69 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCH
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccch
Confidence            345555555544  35689999999999999999986   46899999985

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.33  E-value=1.8e-07  Score=63.22  Aligned_cols=36  Identities=11%  Similarity=0.109  Sum_probs=31.2

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.++.+|||||||+|..+..||+..  +.+|+++|+++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~  100 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAP  100 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccc
Confidence            3567899999999999999999865  47899999975

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.3e-07  Score=62.78  Aligned_cols=46  Identities=20%  Similarity=0.207  Sum_probs=36.8

Q ss_pred             HHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -.+...+...  .++.+|||||||+|+.+..+++..+ +.+++++|+++
T Consensus        71 ~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~  118 (268)
T d1p91a_          71 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSK  118 (268)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCH
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchH
Confidence            3344444433  4678999999999999999999987 78999999975

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=1.1e-06  Score=57.76  Aligned_cols=50  Identities=10%  Similarity=0.102  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHHHHhc---CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~---~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++.++-+...+...   .+++|||+|||+|..++.+++. + ..+|+++|+|+
T Consensus        29 T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~   81 (197)
T d1ne2a_          29 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDP   81 (197)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCH
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCH
Confidence            3455555554445443   6899999999999998877764 3 46899999985

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=6.2e-07  Score=59.01  Aligned_cols=35  Identities=17%  Similarity=0.048  Sum_probs=31.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...|||||||+|..++.+|+..| +..++++|+++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~   63 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFK   63 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCH
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecch
Confidence            345899999999999999999988 78999999863

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=3.1e-07  Score=62.97  Aligned_cols=42  Identities=14%  Similarity=0.103  Sum_probs=34.3

Q ss_pred             HHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+++   +.++.+|||||||.|..+.++++..+  .+|+++|+++
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~   85 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSK   85 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCH
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchH
Confidence            444443   45788999999999999999998765  6999999885

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.21  E-value=2.2e-06  Score=55.99  Aligned_cols=50  Identities=20%  Similarity=0.125  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++..+.-+..++..   ..+++|||+|||+|..++.+++. + ..+|+++|+|+
T Consensus        27 Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~   79 (201)
T d1wy7a1          27 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDK   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcH
Confidence            445556555554554   36789999999999999887764 3 46999999985

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9.8e-07  Score=60.50  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++|||||||+|..++++|++ + ..+|+++|.++
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~-G-a~~V~aid~s~   68 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE   68 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHc-C-CCEEEEEeCHH
Confidence            3457899999999999999999986 3 36899999886

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.19  E-value=3.9e-06  Score=55.89  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=32.8

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      ...+.++|||||||+|..+..+++..| +.+++.+|+.
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~~  113 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEMA  113 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECT
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccCH
Confidence            346788999999999999999999998 7899999964

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.3e-06  Score=58.87  Aligned_cols=35  Identities=6%  Similarity=-0.006  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..++||||||+|+.++.+|+..+ +.+++++|+++
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~   95 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDD   95 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCH
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCH
Confidence            345999999999999999999998 89999999985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1.3e-06  Score=60.16  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+.++|||||||+|..++++|++ + ..+|+++|.++
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~   66 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSS   66 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcH
Confidence            3458899999999999999998885 3 35899999876

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=6.8e-07  Score=61.70  Aligned_cols=45  Identities=13%  Similarity=0.031  Sum_probs=35.9

Q ss_pred             HHHHHHHH---HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLL---KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~---~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -..+..++   .+.++.+|||||||.|..++++|+..+  ++|+++++++
T Consensus        47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~   94 (291)
T d1kpia_          47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSE   94 (291)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchH
Confidence            33444444   456788999999999999999998865  7999999875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.12  E-value=1.2e-06  Score=58.75  Aligned_cols=36  Identities=22%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+..+|||||+|+|..|..|++.   ..+|+++|+|+
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~   53 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDH   53 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCH
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeecc
Confidence            3457889999999999999999986   47899999985

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.10  E-value=1.7e-06  Score=56.84  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=31.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....|||||||+|-.++.+|+..| +..++++|+++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~   65 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQK   65 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCH
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccH
Confidence            445899999999999999999998 78999999864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=3.7e-06  Score=58.08  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+.++|||||||+|..++.+|++ + ..+|+++|.++
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s~   71 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS   71 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCCH
Confidence            34568999999999999999988875 3 35999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.09  E-value=3.1e-06  Score=54.42  Aligned_cols=52  Identities=13%  Similarity=0.073  Sum_probs=45.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++..++++..++...+..+|||.|||+|.....+.+..+...+++++|+++
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~   54 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP   54 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCT
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCH
Confidence            4577888888888888899999999999999888888888788999999986

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=9.3e-07  Score=60.83  Aligned_cols=46  Identities=11%  Similarity=0.105  Sum_probs=36.7

Q ss_pred             HHHHHHHHH---HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLL---KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~---~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +-+.+..++   .+.++.+|||||||.|..++++|+.-+  ++|++|.+++
T Consensus        47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~   95 (285)
T d1kpga_          47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSK   95 (285)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccH
Confidence            334445444   456788999999999999999999864  8999999875

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5.7e-07  Score=58.73  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=29.6

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.++|||||||+|..+..+++..+  .+|+++|+++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~   93 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITE   93 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCH
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCH
Confidence            34668999999999999988876543  5899999875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=3.1e-06  Score=61.00  Aligned_cols=39  Identities=15%  Similarity=0.053  Sum_probs=34.5

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.+..+|||||||+|..++.+|+..+ .+++++||+++
T Consensus       212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~  250 (406)
T d1u2za_         212 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMD  250 (406)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCH
T ss_pred             hCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCH
Confidence            4567788999999999999999999987 67999999985

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.03  E-value=1.8e-06  Score=57.27  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=29.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||||||+|.-+..+++. + .++|+++|+++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~-~-~~~v~GiD~S~   57 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAE   57 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCH
T ss_pred             CCcCEEEEecccCcHHHHHHHHc-C-CCeEEEecCCH
Confidence            46789999999999988888886 2 46899999986

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.6e-06  Score=57.75  Aligned_cols=48  Identities=6%  Similarity=-0.095  Sum_probs=36.2

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++....-+...+...+.+.|||||+|+|..|..|++.   ..+|++||+|+
T Consensus         6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~   53 (252)
T d1qyra_           6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDR   53 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCH
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEecc
Confidence            3333333333345567889999999999999999986   46899999985

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.7e-06  Score=57.87  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=34.1

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.+..+|||||||+|..++.+|+..+ ..++++||+++
T Consensus       147 ~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~  185 (328)
T d1nw3a_         147 IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKAD  185 (328)
T ss_dssp             SCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSH
T ss_pred             cCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCH
Confidence            3456788999999999999999999887 67999999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=4.7e-06  Score=56.50  Aligned_cols=37  Identities=14%  Similarity=-0.026  Sum_probs=32.2

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++++|||+|||+|+.++.+|+. + .++|+++|+|+
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~  140 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDP  140 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCH
T ss_pred             hcCCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCH
Confidence            3467899999999999999999986 3 57999999986

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.92  E-value=1.2e-06  Score=59.26  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=32.1

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+..+|||||+|+|..|..|++.   ..+|++||+|+
T Consensus        25 ~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~   61 (245)
T d1yuba_          25 LNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDS   61 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSC
T ss_pred             cCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecc
Confidence            44557789999999999999999987   46899999986

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.91  E-value=6.5e-06  Score=51.25  Aligned_cols=43  Identities=9%  Similarity=0.056  Sum_probs=33.8

Q ss_pred             HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..|....+.++|||+|||+|..++..++. + ..+|+++|.|+
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~r-g-a~~v~~ve~~~   47 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNR   47 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCH
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHHh-C-cceeeeehhch
Confidence            4455545568999999999999999987764 2 35999999874

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.4e-05  Score=54.65  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             cccCCHHHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           35 FMFSAPDEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        35 ~m~~~~~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++.+.|++..++.....   ..+..+++|+|||+|..++.+++. | +++|+++|+|+
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~  143 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSS  143 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCH
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhh
Confidence            35677888877775554   356789999999999999999864 5 79999999986

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=1.3e-05  Score=52.14  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           31 HPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        31 ~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.|+|.     -+++.. +...+...+||++||+|.-|..+++.+| +++|+++|.|+
T Consensus         6 ~H~pVll-----~evi~~-l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~   57 (192)
T d1m6ya2           6 RHIPVMV-----REVIEF-LKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDS   57 (192)
T ss_dssp             SCCCTTH-----HHHHHH-HCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCH
T ss_pred             CCCchHH-----HHHHHh-hCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechH
Confidence            4677764     224444 3556778999999999999999999997 79999999985

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.7e-06  Score=58.03  Aligned_cols=37  Identities=11%  Similarity=-0.042  Sum_probs=28.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-----CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-----DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-----~~~v~~ie~~~   89 (90)
                      .+..+|||||||+|..+..++..+.+     ..+++++|+++
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~   80 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA   80 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcH
Confidence            34448999999999999999876531     35789999874

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=5.1e-06  Score=53.10  Aligned_cols=37  Identities=22%  Similarity=0.112  Sum_probs=27.1

Q ss_pred             HHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           46 LSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        46 l~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+....+..+|||||||+|..+..++       +++++|+++
T Consensus        28 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~   64 (208)
T d1vlma_          28 LQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSE   64 (208)
T ss_dssp             HHHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCH
T ss_pred             HHHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCCh
Confidence            3444455566689999999998777663       368999875

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.4e-05  Score=49.75  Aligned_cols=86  Identities=7%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             ChhHHHHHHhhcCCCCChHHHHHHHHHHH-------hCCCccccCCH--HHHHHHHHH--HHhcCCCeEEEEcccccHHH
Q 044836            1 MINISQYILETTVYPREHECLKELRELTE-------KHPQNFMFSAP--DEAQFLSML--LKLINAKNTMEIGVYTGYSL   69 (90)
Q Consensus         1 ~~~~~~Yi~~~~~~~~~~~~l~~l~~~a~-------~~~~p~m~~~~--~~~~ll~~l--~~~~~~~~vLEiGt~~G~sa   69 (90)
                      |+++..++.++.. .-.++-.+++..+..       .+++-......  -.-.++..+  +...++++|+|||||.|+=+
T Consensus         2 ~~~l~~~l~~~g~-~ls~~q~~~L~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~ilDiGsGaG~PG   80 (207)
T d1jsxa_           2 LNKLSLLLKDAGI-SLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPG   80 (207)
T ss_dssp             HHHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTH
T ss_pred             hHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhhhhhhcCCceeeeeccCCcee
Confidence            6788888888775 345566666666654       22221111000  122333322  24457889999999999999


Q ss_pred             HHHHhhCCCCCEEEEEecC
Q 044836           70 LVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        70 l~la~~~~~~~~v~~ie~~   88 (90)
                      +-+|-..| +.+++-+|.+
T Consensus        81 i~laI~~p-~~~~~Lves~   98 (207)
T d1jsxa_          81 IPLSIVRP-EAHFTLLDSL   98 (207)
T ss_dssp             HHHHHHCT-TSEEEEEESC
T ss_pred             eehhhhcc-cceEEEEecc
Confidence            99999888 7999999975

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=2.5e-05  Score=49.56  Aligned_cols=43  Identities=9%  Similarity=-0.052  Sum_probs=33.0

Q ss_pred             HHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           44 QFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        44 ~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+.. ..+..+|||+|||+|..++..++.   +++++++|.|+
T Consensus        30 ~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~   73 (171)
T d1ws6a1          30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDP   73 (171)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCH
T ss_pred             HHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCH
Confidence            34444443 357889999999999999876664   57899999985

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.4e-05  Score=54.89  Aligned_cols=37  Identities=19%  Similarity=0.060  Sum_probs=31.6

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.......|||||+|.|..|..|++.   ..+|+++|+|+
T Consensus        17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~   53 (278)
T d1zq9a1          17 AALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDP   53 (278)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCH
T ss_pred             hCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEcc
Confidence            34456779999999999999999987   46999999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.76  E-value=1.8e-05  Score=52.99  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      ..+.++|||||||+|..+..++++.| +.+++.+|+.
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dlp  114 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELA  114 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECH
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecCh
Confidence            35778999999999999999999998 7899999963

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.75  E-value=7.9e-06  Score=54.68  Aligned_cols=35  Identities=6%  Similarity=-0.002  Sum_probs=29.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+.++|||+|||+|..|..++....  .+|+++|+++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~  126 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVK  126 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCH
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCH
Confidence            4677999999999999998886543  4899999875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.49  E-value=0.00016  Score=47.86  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=31.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~   88 (90)
                      .+.++|||||+|+|..++.++++.| +.+++.+|..
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp  114 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLP  114 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccH
Confidence            3467999999999999999999999 7899999864

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=4.9e-05  Score=52.52  Aligned_cols=40  Identities=15%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             HHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           47 SMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        47 ~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+++..+.++|||++||+|..++++|..   .++|+++|+|+
T Consensus       138 r~~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~  177 (318)
T d1wxxa2         138 RLYMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSA  177 (318)
T ss_dssp             HHHGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCH
T ss_pred             HHHHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchH
Confidence            44566678999999999999999998864   57999999985

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=6.9e-06  Score=53.76  Aligned_cols=34  Identities=9%  Similarity=0.022  Sum_probs=26.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++++|||||||+|.-++.+++.-  ..+|+++|+++
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~   84 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTD   84 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCH
Confidence            46699999999998777776542  34799999875

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.29  E-value=0.00012  Score=50.45  Aligned_cols=47  Identities=19%  Similarity=0.167  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ++..--..+... .+.++|||+|||+|..++.+|+. + ..+|+++|+++
T Consensus       131 Dqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~  178 (324)
T d2as0a2         131 DQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSP  178 (324)
T ss_dssp             TTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             chhhHHHHHHhhcCCCCeeecccCcccchhhhhhhc-C-CcEEEeecCCH
Confidence            344444444554 45789999999999999999876 3 46899999985

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.26  E-value=0.00021  Score=49.50  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++++||++.||+|..++.+|.+   +++|++||.++
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~  164 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASK  164 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCH
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChH
Confidence            457889999999999999998875   57999999874

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.23  E-value=0.00071  Score=44.89  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+.++|||||+|+|..+..++++.| +.+++.+|.
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl  112 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR  112 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC
Confidence            4678999999999999999999999 789998885

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=3.8e-05  Score=51.31  Aligned_cols=35  Identities=11%  Similarity=0.094  Sum_probs=26.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++++||||||+|..++..+...  ..+|+++|.++
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~   87 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLE   87 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCH
Confidence            367899999999997665555432  35899999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.0002  Score=49.41  Aligned_cols=38  Identities=13%  Similarity=0.003  Sum_probs=32.7

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+|++||.||.|.|..+.++.+.-+ ..+|+.+|+|+
T Consensus        74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~  111 (312)
T d1uira_          74 THPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDG  111 (312)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCH
T ss_pred             hCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCH
Confidence            346899999999999999988887644 78999999986

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.06  E-value=0.0016  Score=43.46  Aligned_cols=84  Identities=12%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             hhHHHHHHhhcCCCCChHHHHHHHHHHH-------hCCCccccCCHHH---HHHHHHHH--H---hcCCCeEEEEccccc
Q 044836            2 INISQYILETTVYPREHECLKELRELTE-------KHPQNFMFSAPDE---AQFLSMLL--K---LINAKNTMEIGVYTG   66 (90)
Q Consensus         2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~-------~~~~p~m~~~~~~---~~ll~~l~--~---~~~~~~vLEiGt~~G   66 (90)
                      +.+.+.+.++.. .-.++..+++..+.+       .+++-.. .+.+.   -.++..+.  .   ..++++++|||||.|
T Consensus         5 e~l~~~l~~~g~-~ls~~~~~~l~~y~~lL~~wN~~~NLts~-~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaG   82 (239)
T d1xdza_           5 EEFTSGLAEKGI-SLSPRQLEQFELYYDMLVEWNEKINLTSI-TEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAG   82 (239)
T ss_dssp             HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHSCCCSC-CSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSC
T ss_pred             HHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhcCceEEEec-CCHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCc
Confidence            456667766654 345555666655543       3444211 12211   22333322  1   125789999999999


Q ss_pred             HHHHHHHhhCCCCCEEEEEecC
Q 044836           67 YSLLVTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        67 ~sal~la~~~~~~~~v~~ie~~   88 (90)
                      +=++-+|-..| +.+++-+|.+
T Consensus        83 fPGi~laI~~p-~~~v~Lves~  103 (239)
T d1xdza_          83 FPSLPIKICFP-HLHVTIVDSL  103 (239)
T ss_dssp             TTHHHHHHHCT-TCEEEEEESC
T ss_pred             hHHHHHHHhCC-Cccceeecch
Confidence            99999999998 7899999975

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00068  Score=42.98  Aligned_cols=45  Identities=9%  Similarity=0.009  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..++..+-......+|||++||+|..++..++. + ..+|+.+|.|+
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsr-G-a~~v~~VE~~~   76 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSR-Y-AAGATLIEMDR   76 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCH
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEec-C-cceeEEEEEee
Confidence            445555556678899999999999999976664 1 35899999874

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.97  E-value=0.00045  Score=43.96  Aligned_cols=46  Identities=9%  Similarity=0.086  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      -.+++..|....+.++|||+.||+|..++..++. + ..+|+.+|.|+
T Consensus        29 realFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-G-a~~v~~ve~~~   74 (182)
T d2fhpa1          29 KESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNF   74 (182)
T ss_dssp             HHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCH
T ss_pred             HHHHHHHHHHhcCCCEEEEcccccccccceeeec-c-hhHHHHHHHHH
Confidence            3445556555678899999999999999977764 1 35899999875

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.94  E-value=0.00062  Score=45.24  Aligned_cols=34  Identities=15%  Similarity=0.047  Sum_probs=30.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      .+.++|||||+|+|..++.++++.| +.+++.+|.
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl  113 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL  113 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc
Confidence            4568999999999999999999998 789998885

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.0012  Score=45.43  Aligned_cols=52  Identities=8%  Similarity=-0.031  Sum_probs=36.6

Q ss_pred             cCCHHHHHHHHHHHHhc------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLI------NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~------~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+++...+-+-..+.+.      ....|||||.|.|..|..|..... ..+|+++|+|+
T Consensus        20 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~   77 (322)
T d1i4wa_          20 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRS   77 (322)
T ss_dssp             BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCH
T ss_pred             cCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCH
Confidence            34565444333333332      456899999999999999998643 36899999985

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.53  E-value=0.002  Score=44.24  Aligned_cols=48  Identities=15%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .++...-..+++ ..++++||++.||+|..+++++.+ + ..+|+++|+++
T Consensus       129 lDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~-g-a~~V~~vD~s~  177 (317)
T d2b78a2         129 LDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAK  177 (317)
T ss_dssp             GGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCT
T ss_pred             HHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhC-C-CceEEEecCCH
Confidence            345444444444 467899999999999999987764 2 45899999986

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0014  Score=44.89  Aligned_cols=37  Identities=19%  Similarity=-0.013  Sum_probs=32.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+|++||-||.|.|..+..+.+..+ ..+|+.+|+|+
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp  123 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDG  123 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCH
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCH
Confidence            35899999999999998888887655 78999999986

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.43  E-value=0.0017  Score=43.85  Aligned_cols=38  Identities=11%  Similarity=-0.011  Sum_probs=32.9

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+|++||-||-|.|..+.++.+.-+ ..+|+.+|+|+
T Consensus        72 ~~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~  109 (274)
T d1iy9a_          72 THPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDG  109 (274)
T ss_dssp             HSSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCH
T ss_pred             ccCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCH
Confidence            346899999999999999999887655 78999999986

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0018  Score=43.91  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+...++...+..+|||+.++.|.-|+.+|+.+.+.++|+++|+++
T Consensus        83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~  129 (293)
T d2b9ea1          83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA  129 (293)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCH
Confidence            33444555667788999999999999999999998889999999874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.25  E-value=0.0025  Score=42.89  Aligned_cols=37  Identities=14%  Similarity=0.017  Sum_probs=30.8

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+|++||.||.|.|..+..+.+. + ..+|+.+|+|+
T Consensus        69 ~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~  105 (276)
T d1mjfa_          69 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDE  105 (276)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCH
T ss_pred             cCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCH
Confidence            4568999999999999988777763 4 46999999986

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0085  Score=37.86  Aligned_cols=37  Identities=11%  Similarity=0.056  Sum_probs=33.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+|||+|++.|.-+-++++..+..++++++|..+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            4678999999999999999999888889999999875

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0025  Score=43.52  Aligned_cols=51  Identities=10%  Similarity=-0.075  Sum_probs=39.2

Q ss_pred             ccCCHHHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           36 MFSAPDEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        36 m~~~~~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ..+.+.+.+.|...+.    ..+..+|||+-||+|..|+.||+.   .++|+++|.++
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~  244 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVP  244 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCH
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcH
Confidence            4556666666664443    336779999999999999999985   57999999874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.06  E-value=0.0021  Score=43.53  Aligned_cols=53  Identities=9%  Similarity=0.018  Sum_probs=37.5

Q ss_pred             cCCHHHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCC----CCEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPD----DGKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~----~~~v~~ie~~~   89 (90)
                      ..++..+.++..++.    ..+..+|||.|||+|...+.+...+..    +.+++++|+++
T Consensus        96 ~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~  156 (328)
T d2f8la1          96 MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD  156 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCH
T ss_pred             ECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccH
Confidence            345556666665542    345568999999999998888765432    45899999975

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.93  E-value=0.0038  Score=43.02  Aligned_cols=38  Identities=18%  Similarity=-0.002  Sum_probs=32.5

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+|++||-||.|.|..+..+.+.-+ ..+|+.+|+|+
T Consensus       103 ~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~  140 (312)
T d2b2ca1         103 AHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDE  140 (312)
T ss_dssp             HSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCH
T ss_pred             cCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccH
Confidence            346899999999999999888887644 67999999986

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.85  E-value=0.0035  Score=42.57  Aligned_cols=36  Identities=19%  Similarity=0.091  Sum_probs=31.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|++||-||.|.|..+..+.+.-+ ..+|+.+|+|+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~  114 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDK  114 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCH
T ss_pred             CCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCH
Confidence            5899999999999999888887655 67999999986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0038  Score=42.36  Aligned_cols=38  Identities=16%  Similarity=-0.019  Sum_probs=32.3

Q ss_pred             HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+|++||-||.|.|..+..+.+.-+ ..+|+.+|+|+
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~  112 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDE  112 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCH
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCH
Confidence            345899999999999998888887654 68999999985

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.011  Score=39.67  Aligned_cols=48  Identities=15%  Similarity=0.081  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...++...++...+..+|||+.++-|.=|+.+|+.+. +++|+++|+++
T Consensus        89 ~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~  136 (284)
T d1sqga2          89 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDE  136 (284)
T ss_dssp             HHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESST
T ss_pred             ccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcch
Confidence            4455555566667888999999999999999999876 69999999986

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.63  E-value=0.008  Score=42.17  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             HHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           49 LLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        49 l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +++..++++|||..++||.-++..|...+ ..+|++.|+|+
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~   79 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISE   79 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCH
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCH
Confidence            45667999999999999999998888777 67999999986

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.53  E-value=0.013  Score=39.86  Aligned_cols=48  Identities=10%  Similarity=0.113  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ...+...++...+..+|||+.++.|.=|..++..+...|.|+++|+++
T Consensus       104 aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~  151 (313)
T d1ixka_         104 SSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE  151 (313)
T ss_dssp             HHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH
T ss_pred             cccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCH
Confidence            344555555667788999999999999999999999899999999874

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=95.32  E-value=0.03  Score=34.96  Aligned_cols=48  Identities=10%  Similarity=0.089  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .--..++..+-......+|||+-+|||..++-.++. + ..+++.||.|.
T Consensus        29 ~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSR-G-A~~v~fVE~~~   76 (183)
T d2ifta1          29 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSR-Q-AKKVTFLELDK   76 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCH
T ss_pred             HHHHHHHHHhhhhcccceEeecccCccceeeeeeee-c-ceeeEEeeccc
Confidence            344556666666678889999999999999988875 2 45999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.23  E-value=0.022  Score=34.51  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=30.8

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ......+||-+|+| .|..++.+|+..+  ++|+.+|.++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~   60 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSP   60 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHH
Confidence            45677899999988 7888899998875  6999999874

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.10  E-value=0.021  Score=35.96  Aligned_cols=37  Identities=16%  Similarity=-0.066  Sum_probs=25.5

Q ss_pred             cCCCeEEEEcccccHHHHHHH----hhCCC---CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTA----LAIPD---DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la----~~~~~---~~~v~~ie~~~   89 (90)
                      .++-+|+.+||++|-.+-.||    ++...   .-+|++.|+|+
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~   66 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT   66 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCCh
Confidence            456699999999997544433    33221   34799999985

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.00  E-value=0.009  Score=42.18  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=32.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..+...++|||+..|.++.++++..+. .++|+++|+++
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p  248 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR  248 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCH
Confidence            346669999999999999999887764 47999999886

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.87  E-value=0.027  Score=35.58  Aligned_cols=40  Identities=13%  Similarity=-0.021  Sum_probs=33.9

Q ss_pred             HHHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           49 LLKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        49 l~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+...+..+||.+|+|. |..++.+|+..+ .++|+++|.++
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~   60 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNP   60 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccc
Confidence            35678899999999987 778899999887 67999999875

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.63  E-value=0.031  Score=35.26  Aligned_cols=37  Identities=8%  Similarity=-0.063  Sum_probs=31.1

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+...++|..+|.|.-+..+.+.   +|+|+++|.++
T Consensus        14 l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~   50 (182)
T d1wg8a2          14 LAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDP   50 (182)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCH
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhh
Confidence            34577889999999999888888774   78999999986

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.46  E-value=0.022  Score=34.79  Aligned_cols=38  Identities=11%  Similarity=-0.044  Sum_probs=31.5

Q ss_pred             HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+.++||.+|+| .|..++.+|+.++  ++|+++|.++
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~   61 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSS   61 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSS
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccch
Confidence            345678899999988 7888888988864  7999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.78  E-value=0.038  Score=34.20  Aligned_cols=39  Identities=13%  Similarity=0.145  Sum_probs=33.1

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+..+||-+|+|. |..++.+|++++ ..+|+..|.++
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~   63 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDING   63 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-Cceeeeeccch
Confidence            3456778999999987 999999999987 67899999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.53  E-value=0.022  Score=35.07  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=30.3

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-+|+| .|..++.+|+..+ ..+|+.+|.++
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~   63 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSP   63 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCH
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-ccccccccccc
Confidence            34567899999987 4888899999876 34899999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.26  E-value=0.066  Score=34.10  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|.+||-||.| .|..++..|.+++  ++|+.+|+++
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~   62 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRA   62 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCS
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccH
Confidence            579999999998 5899999999996  8999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.01  E-value=0.039  Score=34.06  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +...+..+||-+|+|. |..++.+|+.++ ..+|+++|.++
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~   62 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRP   62 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchh
Confidence            4567788999999886 889999999876 45799999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.15  Score=30.71  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=30.0

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+..+||-+|+| .|..++.+++..+ ..+|+.+|.++
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~   61 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSA   61 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCH
Confidence            44567899999985 5778888888876 45899999874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=92.84  E-value=0.1  Score=36.30  Aligned_cols=56  Identities=11%  Similarity=-0.001  Sum_probs=42.9

Q ss_pred             ccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCC------------CEEEEEecCC
Q 044836           34 NFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDD------------GKVQWMNTNL   89 (90)
Q Consensus        34 p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~------------~~v~~ie~~~   89 (90)
                      .....+....+++..++.-....+|+|-.||+|...+...+.+...            ..++++|+++
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~  209 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP  209 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccH
Confidence            3446677778888777776777899999999999998888876532            2488888774

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.41  E-value=0.099  Score=35.81  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=26.9

Q ss_pred             CeEEEEcccccHHHHHHHhhCC------CCCEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIP------DDGKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~------~~~~v~~ie~~~   89 (90)
                      -+|+|+|.|.|..+.-+.+.+.      +..+++.+|.++
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~  120 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP  120 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccch
Confidence            4799999999999988877654      245688888775

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.08  E-value=0.098  Score=32.82  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|.+|+-||.| .|..++..|.+++  ++|+.+|.++
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~   65 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINV   65 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcH
Confidence            579999999998 5999999999996  8999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.50  E-value=0.077  Score=31.15  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=24.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC---CCCEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIP---DDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~---~~~~v~~ie~~~   89 (90)
                      +|||+-||.  |+.++.+|..+.   .+.+|+.+|.++
T Consensus         2 gkrivIvGg--G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG--GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc--cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999998  555566665553   367999999876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.40  E-value=0.11  Score=29.98  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=29.4

Q ss_pred             HHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           49 LLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        49 l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      +.++.+|++|+-||.  |+.++-+|..+.. +.+|+-++..+
T Consensus        16 ~~~l~~p~~v~IiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          16 FFNIKESKKIGIVGS--GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             HTTCCCCSEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             HhccCCCCEEEEECC--chHHHHHHHHHHhccccceeeehhc
Confidence            345677999999998  6777777777654 57999988653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.25  E-value=0.088  Score=31.82  Aligned_cols=39  Identities=10%  Similarity=0.115  Sum_probs=29.9

Q ss_pred             HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+..+|+-+|+|. |.+++.+++... ..+|+++|.++
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~   63 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNP   63 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchH
Confidence            3456778999999877 666676777766 77999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.90  E-value=0.095  Score=31.80  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             HHhcCCCeEEEEcc-cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGV-YTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt-~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+..+||-+|+ |.|.+++.+++.+. ..+|+++|.++
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~   63 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK   63 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcH
Confidence            45667789999987 56667788888876 68999999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.26  E-value=0.1  Score=31.42  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=30.0

Q ss_pred             HHhcCCCeEEEEcc-cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGV-YTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt-~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+..+||-+|+ |.|..++.+|+.++ ..+|+++|.++
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~   63 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINK   63 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCG
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccH
Confidence            34567889998875 56777788888887 67899998775

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.90  E-value=0.13  Score=29.76  Aligned_cols=35  Identities=20%  Similarity=0.124  Sum_probs=29.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .-|++++-||.  ||.++-+|..+.. +.+|+-++.++
T Consensus        23 ~~p~~~viiG~--G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGA--GYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCC--SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEEcc--chHHHHHHHHHHhcCCeEEEEEEcc
Confidence            46899999998  8888888888775 67999998765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.57  E-value=0.23  Score=30.35  Aligned_cols=38  Identities=13%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+..+|+-+|+| .|.+++.+++.++ ..+|+++|.++
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~   64 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNK   64 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcH
Confidence            34567799999976 5677778888776 67999999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.53  E-value=0.2  Score=28.50  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=27.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..|++|+-||.  |+.++-+|..+.. +.+|+-+|..+
T Consensus        20 ~~p~~v~IiGg--G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGG--GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hcCCeEEEECC--CccceeeeeeecccccEEEEEEecc
Confidence            46899999998  7777777777654 57899888654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.15  E-value=0.17  Score=29.88  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=26.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCC-CEEEEEecCC
Q 044836           55 AKNTMEIGVYTGYSLLVTALAIPDD-GKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~~G~sal~la~~~~~~-~~v~~ie~~~   89 (90)
                      .|+||-||+  |..+..+|+.+.+. -+|+.+|++.
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECCh
Confidence            479999987  77888888887764 5899999874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.07  E-value=0.25  Score=30.37  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=25.0

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +|--||  .||.++.+|..+..+-+|+++|+|+
T Consensus         2 kI~ViG--lG~vGl~~a~~~a~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAG--SGYVGLSLGVLLSLQNEVTIVDILP   32 (196)
T ss_dssp             EEEEEC--CSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEEC--CChhHHHHHHHHHCCCcEEEEECCH
Confidence            566776  5888888888777677999999885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.98  E-value=0.29  Score=32.45  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=24.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      +.|+|+-||+|  .|++..|..+.+ +-+|+-+|.++
T Consensus         1 k~KKI~IIGaG--~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAG--FSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCc--HHHHHHHHHHHhCCCCEEEEECCC
Confidence            35899999984  455666655554 45899999764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=87.74  E-value=0.24  Score=31.08  Aligned_cols=36  Identities=11%  Similarity=0.053  Sum_probs=23.5

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..+|++|+-||.|.+..+.+.  .+.+ +-+|+-+|.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~--~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAY--VLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHH--HHHHHTCEEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHH--HHHHCCCCEEEEeCCC
Confidence            467899999999754333332  2222 46899998764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=87.67  E-value=1.4  Score=29.14  Aligned_cols=49  Identities=8%  Similarity=-0.018  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836           38 SAPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT   87 (90)
Q Consensus        38 ~~~~~~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~   87 (90)
                      ++....+|....-+-  .+..+|+|+||+.|.=+-.++...+ ..++.++++
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~i   98 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTK   98 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECC
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEe
Confidence            456677776655442  3455999999999999988887654 556666654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.23  Score=28.37  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=26.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .-|++|+-||.  |+.++-+|..+.+ +.+|+-+|..+
T Consensus        19 ~~p~~vvIiGg--G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          19 ALPERVAVVGA--GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hCCCEEEEECC--ChhhHHHHHHhhccccEEEEEeecc
Confidence            35899999987  7777777777664 56899888754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=87.41  E-value=0.21  Score=28.30  Aligned_cols=38  Identities=5%  Similarity=-0.010  Sum_probs=28.8

Q ss_pred             HHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      +...++++|+-||.  |+.++-+|..+.. +.+++.++..+
T Consensus        17 l~~~~~~~vvVvGg--G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          17 LDYEPGSTVVVVGG--SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSCCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             HhhCCCCEEEEECC--CHHHHHHHHHHHhcchhheEeeccc
Confidence            34556899999998  7888888877764 57888888654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.22  Score=30.05  Aligned_cols=38  Identities=13%  Similarity=-0.045  Sum_probs=29.2

Q ss_pred             HHhcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGV--YTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt--~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-.|.  +.|..++.+|+.++  .++++++.++
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~   63 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTE   63 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSH
T ss_pred             hCCCCCCEEEEEeccccccccccccccccC--cccccccccc
Confidence            34567789999994  68888999999885  6788777553

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.28  E-value=0.4  Score=26.79  Aligned_cols=37  Identities=14%  Similarity=-0.001  Sum_probs=27.0

Q ss_pred             hcCCCeEEEEc-ccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           52 LINAKNTMEIG-VYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiG-t~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +.+.++|.=|| +|+|.|+++....-. +.+|++-|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            35678999999 899999964443322 67999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.17  E-value=0.26  Score=27.98  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..|++++-||.  |+.++-+|..+.+ +.+|+-+|..+
T Consensus        19 ~~p~~vvIiGg--G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGG--GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCCeEEEECC--CHHHHHHHHHHhhcccceEEEeeec
Confidence            45899999987  7788888887775 57899888764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.78  E-value=0.65  Score=26.57  Aligned_cols=45  Identities=24%  Similarity=0.129  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      +.=+...+...++++|+-||.  |+.++-+|..+.. +.+|+-+|..+
T Consensus        18 a~~i~~~~~~~~~k~vvViGg--G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          18 AIKLKQKTVDPEVNNVVVIGS--GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             HHHHHHHHTCTTCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HHHHHHHhhccCCCEEEEECC--hHHHHHHHHHhhccceEEEEEEecC
Confidence            333444444557889999976  7777877777664 56899888764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=86.76  E-value=0.23  Score=32.78  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+|||.-+|.|.=++.+|+.   +++|+.+|.++
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p  120 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNP  120 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCH
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCH
Confidence            38999999999999999986   68999999886

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=86.53  E-value=0.59  Score=28.39  Aligned_cols=33  Identities=18%  Similarity=0.067  Sum_probs=22.3

Q ss_pred             CCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           55 AKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        55 ~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +|||+-||.| .|.++.+.+...  +-+|+-+|.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence            5899999997 444444444332  46899999764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.42  E-value=0.31  Score=32.02  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCC---CEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPDD---GKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~~---~~v~~ie~~~   89 (90)
                      +-|+|+-||.  |.|++.+|..+...   -+|+.+|.+.
T Consensus         3 ~~KrVaIIGa--G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           3 TIRKIAIIGA--GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             SCCEEEEECC--SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCeEEEECc--CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            3479999998  55555555544322   3899999764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.12  E-value=0.57  Score=27.32  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=25.2

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ||+-||.  |+.++.+|..+...++|+-++..+
T Consensus         2 rVvIIGg--G~~G~e~A~~l~~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN--GPGGFELAKQLSQTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSSS
T ss_pred             eEEEECC--cHHHHHHHHHHHcCCCEEEEeccc
Confidence            6788887  688888888888788999988654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=0.32  Score=29.96  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=23.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .+..+|+-||.|  .++|..|..|.+ +-+|+-+|.+.
T Consensus         3 ~~~~kViVIGaG--~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSG--VSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCB--HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCcEEEECCC--HHHHHHHHHHHhCCCCEEEEeCCC
Confidence            356789999985  444444444443 45899888654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.25  E-value=0.34  Score=27.86  Aligned_cols=35  Identities=20%  Similarity=0.034  Sum_probs=24.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..|++++-||.  |+.++-+|..+.+ +.+|+-+|..+
T Consensus        21 ~~p~~~vIiG~--G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          21 EIPKRLTIIGG--GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCCeEEEECC--CchHHHHHHHHHhhCcceeEEEecc
Confidence            45899999998  5555555555443 57899888754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.05  E-value=0.34  Score=29.45  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+..+||-+|+| .|..++.++++++ ..+|+++|.++
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~   62 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHK   62 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCG
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChH
Confidence            345677899999976 5677788888877 67999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.98  E-value=0.45  Score=27.39  Aligned_cols=36  Identities=19%  Similarity=0.095  Sum_probs=29.0

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..++++|+-||.  |+.++-+|..+.. +.+|+-+|.++
T Consensus        27 ~~~~~~vvIIGg--G~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGG--GVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hhcCCeEEEECc--chhHHHHHHHhhcccceEEEEeecc
Confidence            456899999987  7888888888765 67899998765

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.81  E-value=0.23  Score=29.73  Aligned_cols=35  Identities=6%  Similarity=-0.025  Sum_probs=22.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CC-EEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DG-KVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~-~v~~ie~~~   89 (90)
                      .+++||+-||.|  .+++..|..+.. +. .|+.+|.++
T Consensus         2 ~~~~kVaIIGaG--paGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           2 AYSAKIALLGAG--PASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GGGCCEEEECCS--HHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCCEEEEECCh--HHHHHHHHHHHHCCCCeEEEEEecC
Confidence            368999999985  444444444433 33 488888765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.37  Score=27.75  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=27.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      -|++|+-||.  |+.++-+|..+.. +.+|+-++.++
T Consensus        21 ~pk~vvIvGg--G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGA--GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEEcC--CccHHHHHHHHhcCCcEEEEEeecc
Confidence            4799999998  6788888887665 56899988764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.60  E-value=0.54  Score=27.39  Aligned_cols=36  Identities=28%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             hcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           52 LINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        52 ~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..++++|+-||.  |+.++-+|..+.. +.+|+-+|..+
T Consensus        32 ~~~~k~v~VIGg--G~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          32 LIADNRLVVIGG--GYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             CCTTCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hccCCEEEEECC--chHHHHHHHHHHhhCcceeeeeecc
Confidence            457899999987  7788888877754 57899888764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.52  E-value=0.58  Score=27.71  Aligned_cols=38  Identities=13%  Similarity=-0.043  Sum_probs=30.6

Q ss_pred             HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....+.++||-+|+| .|..++.+++..+  .+|+++|.++
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~   61 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDD   61 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcC--Cccceecchh
Confidence            456778899999975 5788888888875  7999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=83.93  E-value=0.81  Score=27.22  Aligned_cols=38  Identities=18%  Similarity=0.047  Sum_probs=28.6

Q ss_pred             HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-+|+| .|..++.+|++++  ++++.+|.++
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~   64 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSE   64 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccch
Confidence            456678899999975 4778888888874  6777777653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.90  E-value=0.73  Score=27.33  Aligned_cols=39  Identities=15%  Similarity=0.120  Sum_probs=30.1

Q ss_pred             HHhcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIGV--YTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiGt--~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      ....++.+||-+|+  +.|..++.++++.+ ..+|+++|.++
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~   63 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVRE   63 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSH
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccch
Confidence            34567789999995  47777888888876 56899998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.16  E-value=0.53  Score=26.84  Aligned_cols=35  Identities=14%  Similarity=-0.031  Sum_probs=27.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..|++++-||.  |+.++-+|+.+.. +.+|+.++.++
T Consensus        20 ~~p~~i~IiG~--G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA--GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCeEEEECC--ChHHHHHHHHHHHcCCceEEEEeec
Confidence            46899999997  7788887777765 57899888654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.54  Score=33.41  Aligned_cols=53  Identities=11%  Similarity=-0.033  Sum_probs=39.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCC-----------------CEEEEEecCC
Q 044836           37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDD-----------------GKVQWMNTNL   89 (90)
Q Consensus        37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~-----------------~~v~~ie~~~   89 (90)
                      ..+....+++..++......+|+|-.||+|...+...+.+.+.                 ..++++|+++
T Consensus       147 yTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~  216 (524)
T d2ar0a1         147 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP  216 (524)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred             ccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence            4566777777777766667799999999999888777665431                 2578888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.54  E-value=0.33  Score=29.13  Aligned_cols=37  Identities=11%  Similarity=-0.074  Sum_probs=28.1

Q ss_pred             HhcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           51 KLINAKNTMEIGVY--TGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        51 ~~~~~~~vLEiGt~--~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      +..+.++||-.|.+  .|..++.+|+..+  ++|++++.++
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~   63 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTA   63 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccch
Confidence            44567899998544  6778888888864  7999988764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.66  E-value=1.1  Score=26.76  Aligned_cols=38  Identities=11%  Similarity=-0.046  Sum_probs=29.4

Q ss_pred             HHhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836           50 LKLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTNL   89 (90)
Q Consensus        50 ~~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~~   89 (90)
                      .+..+.++||-.|  .+.|..++.+|+..+  ++|++++.++
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~   62 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRP   62 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccc
Confidence            4566788999988  356788888999875  6888888664

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=81.32  E-value=4.7  Score=26.74  Aligned_cols=47  Identities=13%  Similarity=0.145  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEc-ccccHHHH--HHHhhCCCCCEEEEEecC
Q 044836           40 PDEAQFLSMLLKLINAKNTMEIG-VYTGYSLL--VTALAIPDDGKVQWMNTN   88 (90)
Q Consensus        40 ~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal--~la~~~~~~~~v~~ie~~   88 (90)
                      ++...+|..+++..  ++||-.| ||+|=+|+  +|+..+|++.+++++|-.
T Consensus       153 ~~~~~~l~~~v~~~--~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~  202 (323)
T d1g6oa_         153 EQAISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  202 (323)
T ss_dssp             HHHHHHHHHHHHHT--CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             HHHHHHHHHHHHhC--CCEEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence            45667777766544  4577676 79999885  466678888899999854

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.08  E-value=0.63  Score=26.92  Aligned_cols=35  Identities=11%  Similarity=0.006  Sum_probs=28.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      ..|++++-||.  |+.++-+|..+.. +.+|+-+|..+
T Consensus        24 ~~p~~vvIiGg--G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG--GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC--SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECC--CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            46899999998  7888888888776 67899888654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=81.07  E-value=0.41  Score=28.26  Aligned_cols=31  Identities=10%  Similarity=0.179  Sum_probs=18.0

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCC--EEEEEecCC
Q 044836           57 NTMEIGVYTGYSLLVTALAIPDDG--KVQWMNTNL   89 (90)
Q Consensus        57 ~vLEiGt~~G~sal~la~~~~~~~--~v~~ie~~~   89 (90)
                      +|+-||.|.+.  +..|..+.+.|  .|+-+|.++
T Consensus         2 ~V~IIGaG~aG--L~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSG--ISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHH--HHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHH--HHHHHHHHhCCCCcEEEEECCC
Confidence            48888886543  33333333333  488888764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.64  E-value=0.73  Score=26.21  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=27.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836           53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL   89 (90)
Q Consensus        53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~   89 (90)
                      .++++|+-||.  |+.++-+|..+.. +.+|+-+|.++
T Consensus        30 ~~~~~vvIiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGG--GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEEC--SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEECC--cHHHHHHHHHhhcccceEEEEeccc
Confidence            45789999887  8888888888775 56899888765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.15  E-value=0.74  Score=27.04  Aligned_cols=31  Identities=10%  Similarity=0.005  Sum_probs=19.5

Q ss_pred             EEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836           58 TMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY   90 (90)
Q Consensus        58 vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~   90 (90)
                      |+-||+|.+.  +..|..+.. +-+|+-+|.+++
T Consensus         8 viViGaG~~G--l~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITE--CILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHH--HHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHH--HHHHHHHHHCCCCEEEEcCCCC
Confidence            7888876544  333333322 568999998753