Citrus Sinensis ID: 044850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MPDFQVLELEVGDDDGTLLLEEKDTLDEEKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQARERILEERFSPENRLPILTEEI
Secondary Structure (PSIPRED)
ccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHcc
Coil and Loop (DISEMBL)
MPDFQVLElevgdddgtlLLEEKDTLDEEKKEESLREGNVALFFSGSEELLTLLSgflpnpkletsapsvclATVYtlntipdglgAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFklrgpapwiglqAGAFLQTILLFIITNRTNWEKQARERILEerfspenrlpilteei
Flexible Loop (DISEMBL)
mpdfqvlelevgdddgtllleekdtldeekkeeslregNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQARErileerfspenrlpilteei
Low Complexity Region (SEG)
MPDFQVlelevgdddgtllleekdtldeekkeeSLREGNVAlffsgseelltllsgflPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTlgagklkaasvavkavIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQARERILEERFSPENRLPILTEEI
Disordered region (IsUnstruct)
**************************************NVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ***********************
Disordered Region (DISOPRED)
*PDFQVLELEVGDDDGTLLLEEKDTLDEEKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQAR**************PI*****
Disordered Region (DISEMBL)
MPDFQVLELEVGDDDGTLLLEEKDT**********REGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQARERILEERFSPENRLPILTEEI
Disordered Region (DISPRO)
*PDFQVLELEVGDDDGTLLLEEKDTLDEEKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQARERILEERFSPENRLPI*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDFQVLELEVGDDDGTLLLEEKDTLDEEKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQARERILEERFSPENRLPILTEEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q9SIA1	477	MATE efflux family protei	no	no	0.74	0.387	0.432	9e-34
Q8RWF5	483	MATE efflux family protei	no	no	0.78	0.403	0.411	5e-32
Q9SIA4	476	MATE efflux family protei	no	no	0.776	0.407	0.407	1e-30
Q8GXM8	476	MATE efflux family protei	no	no	0.76	0.399	0.419	1e-30
Q9SIA5	476	MATE efflux family protei	no	no	0.76	0.399	0.404	2e-28
Q9SIA3	476	MATE efflux family protei	no	no	0.764	0.401	0.406	3e-28
Q9LUH2	477	MATE efflux family protei	no	no	0.712	0.373	0.317	8e-18
Q9LUH3	469	MATE efflux family protei	no	no	0.712	0.379	0.306	1e-17
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.716	0.353	0.331	8e-17
A1L1P9	590	Multidrug and toxin extru	no	no	0.74	0.313	0.25	2e-09

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  143 bits (361), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 116/199 (58%), Gaps = 14/199 (7%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           ELL L SG LPNPKLETS  S+CL T      IP G+GAA   R SN LGAG  + A +A
Sbjct: 274 ELLILSSGLLPNPKLETSVLSICLTTSSLHCVIPMGIGAAGSTRISNELGAGNPEVARLA 333

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
           V A IFL   E+ I    L   +++F Y  SN+KEVVD+V  +++L+CLS ++D   +VL
Sbjct: 334 VFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVVDYVTELSSLLCLSFMVDGFSSVL 393

Query: 167 SA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
                      + A+ ++  YY+ G PV   LGF   + G   WIG+  G+  Q I+L I
Sbjct: 394 DGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGHMNGKGLWIGVIVGSTAQGIILAI 453

Query: 218 ITNRTNWEKQ---ARERIL 233
           +T   +WE+Q   ARERI+
Sbjct: 454 VTACLSWEEQAAKARERIV 472

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 114/209 (54%), Gaps = 14/209 (6%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           E L L SG LPNPKLETS  S+CL T      IP G+GAA   R SN LGAG  + A +A
Sbjct: 274 EFLILSSGLLPNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSNELGAGNPEVARLA 333

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
           V A IFL   E+ I    L   R +F Y  SN+KEVVD+V  ++ L+C+S ++D    VL
Sbjct: 334 VFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVTELSPLLCISFLVDGFSAVL 393

Query: 167 SA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
                      + A+ ++  YY+ G PV   LGF   + G   WIG+  G+  Q I+L I
Sbjct: 394 GGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGVVVGSTAQGIILAI 453

Query: 218 ITNRTNWEKQ---ARERILEERFSPENRL 243
           +T   +W +Q   AR+RI+    S  N L
Sbjct: 454 VTACMSWNEQAAKARQRIVVRTSSFGNGL 482

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 111/206 (53%), Gaps = 12/206 (5%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           ELL L SG LPNPKLETS  S+CL T      IP G+ AA   R SN LGAG  + A V+
Sbjct: 271 ELLILCSGLLPNPKLETSVLSICLTTASLHYVIPGGVAAAVSTRVSNKLGAGIPQVARVS 330

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
           V A + L   ES      L   R++  Y  SN+KEVVD+V  +  L+CLS +LD    VL
Sbjct: 331 VLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKEVVDYVANLTPLLCLSFILDGFTAVL 390

Query: 167 SAL---RAYVDLG------TYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
           + +     +  +G       YY+ G PV   L F  +L G   W G+  G+ +Q I+L  
Sbjct: 391 NGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFNRELNGKGLWCGVVVGSAVQAIILAF 450

Query: 218 ITNRTNWEKQARERILEERFSPENRL 243
           +T   NW++QA E+  +   S ENRL
Sbjct: 451 VTASINWKEQA-EKARKRMVSSENRL 475

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 118/210 (56%), Gaps = 20/210 (9%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKLKAASV 105
           ELL L SG LPNPKLETS  S+CL T+ TL+  IP G+ AA   R SN LGAG  + A V
Sbjct: 271 ELLILCSGLLPNPKLETSVLSICL-TIGTLHYVIPSGVAAAVSTRVSNKLGAGNPQVARV 329

Query: 106 AVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV 165
           +V A + L   ES      L   R++  Y  SN+KEVVD+V  ++ L+CLS +LD L  V
Sbjct: 330 SVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLCLSFILDGLTAV 389

Query: 166 LSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLF 216
           L+          + A +++  YY+ G PV   L F  +  G   W G+  G+ +Q  LL 
Sbjct: 390 LNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVGSAVQATLLA 449

Query: 217 IITNRTNWEKQ---ARERILEERFSPENRL 243
           I+T   NW++Q   AR+RI+    S EN L
Sbjct: 450 IVTASMNWKEQAEKARKRII----STENGL 475

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 117/210 (55%), Gaps = 20/210 (9%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKLKAASV 105
           E+L L SG LPNPKLETS  S+CL T+ TL+  I  G+ AA   R SN LGAG  + A V
Sbjct: 271 EILILCSGLLPNPKLETSVLSICL-TIETLHYVISAGVAAAVSTRVSNNLGAGNPQVARV 329

Query: 106 AVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV 165
           +V A + L   ES      L   R++  Y  SN+KEV+D+V  +  L+CLS +LD    V
Sbjct: 330 SVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTPLLCLSFILDGFTAV 389

Query: 166 LSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLF 216
           L+          + A+ +  +YY+ G PV   L F  +L G   W G+  G+ +Q  +L 
Sbjct: 390 LNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGKGLWCGVVVGSTVQATILA 449

Query: 217 IITNRTNWEKQ---ARERILEERFSPENRL 243
           I+T   NW++Q   AR+RI+    S ENRL
Sbjct: 450 IVTASINWKEQAEKARKRIV----STENRL 475

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 113/209 (54%), Gaps = 18/209 (8%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           ELL L SG L NPKLETS  S+CL T      IP G+ AA   R SN LGAG  + A V+
Sbjct: 271 ELLILCSGLLQNPKLETSVLSICLTTATLHYVIPVGVAAAVSTRVSNKLGAGIPQVARVS 330

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
           V A + L   ES      L   R++  Y  SN+KEVVD+V  ++ L+CLS VLD    VL
Sbjct: 331 VLAGLCLWLVESSFFSILLFAFRNIIGYAFSNSKEVVDYVADLSPLLCLSFVLDGFTAVL 390

Query: 167 SA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
           +          + A  ++  YY+ G PV   L F  +L G   W G+  G+ +Q I+L I
Sbjct: 391 NGVARGCGWQHIGALNNVVAYYLVGAPVGIYLAFSCELNGKGLWCGVVVGSAVQAIILAI 450

Query: 218 ITNRTNWE---KQARERILEERFSPENRL 243
           +T   NW+   K+AR+R++    S EN L
Sbjct: 451 VTASMNWKEQAKKARKRLI----SSENGL 475

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 11/189 (5%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           E+L  L+G +PNP++ TS  ++C+ T      +  GL AAA  R SN LGAG +K A  A
Sbjct: 283 EILVFLAGVMPNPEINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKA 342

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
               + L+   ++ V+  LL     +  + S++  + +   ++   +  S+ LDS++ VL
Sbjct: 343 TSVSVKLSLVLALGVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVL 402

Query: 167 SA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
           S          L   ++L T+Y+ G+P+AA  GF  K      WIGL  G F Q+  L +
Sbjct: 403 SGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLL 462

Query: 218 ITNRTNWEK 226
           +T    W K
Sbjct: 463 MTIFRKWTK 471

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           E+L  L+G + NP++ TS  ++C+ T      +  GL AA   R SN LGAG +K A  A
Sbjct: 275 EILVFLAGLMRNPEITTSLVAICVNTESISYMLTCGLSAATSTRVSNELGAGNVKGAKKA 334

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
               + L+   ++ V+  +L     +  + SN+  + +   ++   +  S+ LDS++ VL
Sbjct: 335 TSVSVKLSLVLALGVVIAILVGHDAWVGLFSNSHVIKEGFASLRFFLAASITLDSIQGVL 394

Query: 167 SA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
           S          L   ++LGT+Y+ G+P++   GF  KL     WIGL  G F Q+  L +
Sbjct: 395 SGVARGCGWQRLATVINLGTFYLIGMPISVLCGFKLKLHAKGLWIGLICGMFCQSASLLL 454

Query: 218 ITNRTNWEK 226
           +T    W K
Sbjct: 455 MTIFRKWTK 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 100/199 (50%), Gaps = 20/199 (10%)

Query: 51  LTLLSGFLPNPKLETSAPSVCLATVYTLN---TIPDGLGAA--ARFSNTLGAGKLKAASV 105
           L ++SG L NP +   A S+C+   Y LN       GL AA   R SN LGAG  + A +
Sbjct: 297 LVIISGLLSNPTISLDAISICM---YYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAML 353

Query: 106 AVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV 165
           +V  V       S ++   +L  R       ++  EV+  V  +  L+ +S+ L+ ++ +
Sbjct: 354 SVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPI 413

Query: 166 LS---------ALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLF 216
           LS         A+ AYV+L TYYV G+P+   LGF   L     W G+ AG  LQT+ L 
Sbjct: 414 LSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLI 473

Query: 217 IITNRTNWEKQ---ARERI 232
           ++T +TNW  +   A +R+
Sbjct: 474 VLTLKTNWTSEVENAAQRV 492

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 31/216 (14%)

Query: 54  LSGFLPN--PKLETSAPSVCLATVYTLNTI----PDGLGAAA--RFSNTLGAGKLKAASV 105
           + GFL     + E  A SV    VY L TI    P G   AA  R  N LGAG  + A +
Sbjct: 297 IGGFLAGLISETELGAQSV----VYELATIAYMFPLGFAVAASVRVGNALGAGNTERAKL 352

Query: 106 AVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV 165
           + K  +      S +V   +  ++ V  Y+ +  +E+V  V  +  +     + D++  +
Sbjct: 353 SAKVALVCGVLVSCVVATLIGCTKDVIAYIFTTEEEIVSRVSQVMIMYGFFHLFDAIAGI 412

Query: 166 LSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLF 216
                       L A  ++  YY  G P   +L F   +     WIG     FLQ++   
Sbjct: 413 TGGIVRGAGKQLLGALCNIVGYYFVGFPTGVSLMFALSMGIIGLWIGFFGCVFLQSLFFI 472

Query: 217 IITNRTNWEKQARERIL----------EERFSPENR 242
           I+  + +W+K  +E ++          +E F  EN+
Sbjct: 473 ILIYKLDWKKATQEALIRAGVQLTETKDESFGLENK 508

Solute transporter for tetraethylammonium (TEA), cimetidine, metformin, guanidine, N-methylnicotinamide (NMN) and also the zwitterionic cephalosporin cephalexin. Responsible for the secretion of cationic drugs across the brush border membranes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
255582923	477	TRANSPARENT TESTA 12 protein, putative [	0.752	0.394	0.589	3e-53
224108371	482	predicted protein [Populus trichocarpa]	0.752	0.390	0.579	8e-52
224108375	486	predicted protein [Populus trichocarpa]	0.78	0.401	0.526	6e-49
255582921	490	TRANSPARENT TESTA 12 protein, putative [	0.788	0.402	0.516	2e-48
225424132	481	PREDICTED: MATE efflux family protein 5	0.74	0.384	0.537	3e-48
297737740	443	unnamed protein product [Vitis vinifera]	0.74	0.417	0.537	3e-48
224101797	456	predicted protein [Populus trichocarpa]	0.768	0.421	0.524	5e-48
147787625	481	hypothetical protein VITISV_022104 [Viti	0.74	0.384	0.532	9e-48
356536254	475	PREDICTED: MATE efflux family protein 7-	0.74	0.389	0.542	5e-47
255582915	476	TRANSPARENT TESTA 12 protein, putative [	0.676	0.355	0.566	2e-46

>gi|255582923|ref|XP_002532233.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528090|gb|EEF30164.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 141/202 (69%), Gaps = 14/202 (6%)

Query: 47  SEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAAS 104
           S ELLT+LSG LPNP+LETS  SVCLAT+ TL TIPDG+GAAA  R SN LGAG  KAA 
Sbjct: 265 SFELLTMLSGLLPNPRLETSVLSVCLATITTLYTIPDGVGAAASTRVSNELGAGNAKAAY 324

Query: 105 VAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKT 164
           VAV   + +A  +S+ V A LL +RHVF YV SN KEVVD+V  MA L+ LSV+LDSL+ 
Sbjct: 325 VAVWCAMVVATIQSIAVSAILLVTRHVFGYVFSNEKEVVDYVTAMAPLVSLSVILDSLQG 384

Query: 165 VLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILL 215
            LS          L AYV+L  YY+ GIPVAA LGF   LRG   WIG+Q G+F+Q +LL
Sbjct: 385 TLSGIARGCGWQNLGAYVNLVAYYICGIPVAAVLGFWLNLRGKGLWIGIQVGSFVQIVLL 444

Query: 216 FIITNRTNWEKQ---ARERILE 234
            IIT  TNWE+Q   A+ER+LE
Sbjct: 445 AIITRSTNWEQQAMKAKERVLE 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 141/202 (69%), Gaps = 14/202 (6%)

Query: 47  SEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAAS 104
           S ELL LLSGFLPNP+LETS  SVCL T+ TL  IP GLGAAA  R +N LGAG  +AA 
Sbjct: 274 SFELLILLSGFLPNPQLETSVLSVCLMTISTLYGIPFGLGAAASTRVANELGAGNPRAAR 333

Query: 105 VAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKT 164
           +AV A +FLA SE++IV + L  SR VF Y+ SN KEV+D+V TMA L+CLSV++DSL+ 
Sbjct: 334 LAVYAAMFLAVSETIIVTSALFASRRVFGYLFSNEKEVIDYVTTMAPLVCLSVIMDSLQG 393

Query: 165 VLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILL 215
           VLS          + AY++LG +Y+ GIP AA L F   L G   WIG+Q GAF QTILL
Sbjct: 394 VLSGVARGCGWQHIGAYINLGAFYLCGIPAAALLAFWLNLGGMGLWIGIQTGAFTQTILL 453

Query: 216 FIITNRTNWEKQ---ARERILE 234
            I+T+ TNWEKQ   ARERI E
Sbjct: 454 SIVTSCTNWEKQARMARERIFE 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108375|ref|XP_002314826.1| predicted protein [Populus trichocarpa] gi|222863866|gb|EEF00997.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 139/209 (66%), Gaps = 14/209 (6%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           E++ LLSG L NP+LETS  SVCL T  TL +IP G+GAA   R SN LGAG+ +AA +A
Sbjct: 276 EIVVLLSGLLSNPQLETSVLSVCLTTTSTLYSIPYGIGAAVSTRVSNELGAGRPQAARIA 335

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
           V  V+ LA  E +IV  TL  +R +F Y  SN KEVVD+V  M  L+CLSV+LD L+ VL
Sbjct: 336 VYTVMILAIIEVIIVSGTLFGTRDIFGYSFSNEKEVVDYVSNMTPLVCLSVILDGLQVVL 395

Query: 167 SA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
           S          + AYV+L  +Y+ G+PVAA LG   +L+    WIG+Q GA LQT+LL +
Sbjct: 396 SGVARGCGWQHIGAYVNLAAFYLCGVPVAAILGLWLRLKARGLWIGIQVGAILQTVLLTL 455

Query: 218 ITNRTNWEKQ---ARERILEERFSPENRL 243
           IT+ TNWEKQ   ARERI EER+S E+ L
Sbjct: 456 ITSCTNWEKQASDARERIFEERYSVESVL 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582921|ref|XP_002532232.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528089|gb|EEF30163.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 138/211 (65%), Gaps = 14/211 (6%)

Query: 47  SEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAAS 104
           S E + LLSG LPNP+LETS  SVCL T+ TL  IP GL AA   R SN LGAG  + A 
Sbjct: 279 SYEFVILLSGLLPNPQLETSVLSVCLTTIATLYAIPYGLSAAVSTRVSNELGAGNPRVAK 338

Query: 105 VAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKT 164
            AV +V+F+  +E ++V  TL  +RHVF Y  SN KEVVD V TMA L+CLSV++D L+ 
Sbjct: 339 NAVYSVMFITVAELILVSGTLFTTRHVFGYTFSNEKEVVDSVSTMAPLVCLSVIVDGLQG 398

Query: 165 VLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILL 215
           VLS          + AYV+LG  Y+ G+P AA LGF  +L+G   WIG+  GA LQT+LL
Sbjct: 399 VLSGVARGCGWQHIGAYVNLGALYLCGVPAAAILGFWLQLKGRGLWIGICIGAILQTVLL 458

Query: 216 FIITNRTNWEKQ---ARERILEERFSPENRL 243
           +++T  TNW++Q   AR+RI E R S EN L
Sbjct: 459 YVVTCHTNWKEQANKARKRIFEGRSSVENLL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/199 (53%), Positives = 137/199 (68%), Gaps = 14/199 (7%)

Query: 59  PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANS 116
           PNP+LETS  SVCL T+ TL TIP GLGAA   R SN LGAG  + A +AV A++FLA +
Sbjct: 282 PNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVT 341

Query: 117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------- 168
           E+ +V  TL  SR VF Y+ SN KEVVD+V  M+ L+CLSV+LDS++ VLS         
Sbjct: 342 ETALVSTTLFASRRVFGYLFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQ 401

Query: 169 -LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK- 226
            + A+++LG +Y+ GIPVAA L F  +LRG   WIG+Q GA LQT LL ++T  TNWEK 
Sbjct: 402 HIGAFINLGAFYLCGIPVAATLAFWLQLRGRGLWIGIQTGALLQTTLLCVMTGFTNWEKL 461

Query: 227 --QARERILEERFSPENRL 243
             +AR+RI E R+S E+RL
Sbjct: 462 ATKARQRIFEGRYSVEDRL 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/199 (53%), Positives = 137/199 (68%), Gaps = 14/199 (7%)

Query: 59  PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANS 116
           PNP+LETS  SVCL T+ TL TIP GLGAA   R SN LGAG  + A +AV A++FLA +
Sbjct: 244 PNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVT 303

Query: 117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------- 168
           E+ +V  TL  SR VF Y+ SN KEVVD+V  M+ L+CLSV+LDS++ VLS         
Sbjct: 304 ETALVSTTLFASRRVFGYLFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQ 363

Query: 169 -LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK- 226
            + A+++LG +Y+ GIPVAA L F  +LRG   WIG+Q GA LQT LL ++T  TNWEK 
Sbjct: 364 HIGAFINLGAFYLCGIPVAATLAFWLQLRGRGLWIGIQTGALLQTTLLCVMTGFTNWEKL 423

Query: 227 --QARERILEERFSPENRL 243
             +AR+RI E R+S E+RL
Sbjct: 424 ATKARQRIFEGRYSVEDRL 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101797|ref|XP_002312424.1| predicted protein [Populus trichocarpa] gi|222852244|gb|EEE89791.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 140/206 (67%), Gaps = 14/206 (6%)

Query: 47  SEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAAS 104
           S E++ LLSG L NP+LETS  SVCL T+ TL +IP GLGAAA  R SN LGAG+ +AA 
Sbjct: 250 SYEIVILLSGLLSNPRLETSVLSVCLTTIGTLYSIPYGLGAAASTRVSNELGAGRPQAAR 309

Query: 105 VAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKT 164
           +A  +V+ LA  E  +V  TL  +RH+F Y  SN +EVVD+V  MA L+CLSV++D L+ 
Sbjct: 310 IAAYSVMILAIIELFVVSGTLFATRHIFGYSFSNEREVVDYVSNMAPLVCLSVIIDGLQG 369

Query: 165 VLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILL 215
           VLS          + A V+L   Y+ G+PVAA LG+ F+L+    WIG+QAGA LQT+LL
Sbjct: 370 VLSGVARGCGWQHIGASVNLAALYLCGVPVAAILGYWFQLKARGLWIGIQAGAILQTVLL 429

Query: 216 FIITNRTNWEK---QARERILEERFS 238
            ++T+ TNWEK   QARER+ EER S
Sbjct: 430 SLVTSCTNWEKQARQARERVFEERSS 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera]

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 136/199 (68%), Gaps = 14/199 (7%)

Query: 59  PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANS 116
           PNP+LETS  SVCL T+ TL TIP GLGAA   R SN LGAG  + A +AV A++FLA +
Sbjct: 282 PNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVT 341

Query: 117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------- 168
           E+ +V  T   SR VF Y+ SN KEVVD+V  M+ L+CLSV+LDS++ VLS         
Sbjct: 342 ETALVSTTXFASRRVFGYLFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQ 401

Query: 169 -LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK- 226
            + A+++LG +Y+ GIPVAA L F  +LRG   WIG+Q GA LQT LL ++T  TNWEK 
Sbjct: 402 HIGAFINLGAFYLCGIPVAATLAFWLQLRGRGLWIGIQTGALLQTTLLCVMTGFTNWEKL 461

Query: 227 --QARERILEERFSPENRL 243
             +AR+RI E R+S E+RL
Sbjct: 462 ATKARQRIFEGRYSVEDRL 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536254|ref|XP_003536654.1| PREDICTED: MATE efflux family protein 7-like [Glycine max]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 108/199 (54%), Positives = 135/199 (67%), Gaps = 14/199 (7%)

Query: 59  PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANS 116
           PNP+LETS  SVCL T+ TL TIP G+GAAA  R SN LGAG   AA VAV A + LA  
Sbjct: 276 PNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRVSNELGAGNSHAARVAVLAAMSLAVI 335

Query: 117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------- 168
           E+ IV ATL   R+VF Y+ SN KEVVD+V  MA L+C+SV+LDS++ VL+         
Sbjct: 336 ETSIVSATLFACRNVFGYIFSNEKEVVDYVTAMAPLVCISVILDSIQGVLTGIARGCGWQ 395

Query: 169 -LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
            L  YV+LG +Y+ GIP+AA L FL +L G   WIG+Q+GAF+Q ILL IIT   NWEKQ
Sbjct: 396 HLGVYVNLGAFYLCGIPMAALLAFLVRLGGKGLWIGIQSGAFVQCILLSIITGCINWEKQ 455

Query: 228 ---ARERILEERFSPENRL 243
              AR+R+ +E+ S +N L
Sbjct: 456 AIKARKRLFDEKISADNIL 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 126/180 (70%), Gaps = 11/180 (6%)

Query: 59  PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANS 116
           PNP+LETS  SVCL T+ TL +IP G GAA   R SN LGAGK +AA +AV AV+FLA  
Sbjct: 285 PNPQLETSVLSVCLQTISTLYSIPYGFGAAVSTRVSNELGAGKPQAARIAVFAVLFLAVV 344

Query: 117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------- 168
           E+ IV + L   RHVF Y+ SN KEVVD+V TM+ L+ LSV++DSL+ VLS         
Sbjct: 345 ETAIVSSALFACRHVFGYLFSNEKEVVDYVTTMSPLVALSVIMDSLQGVLSGVARGCGWQ 404

Query: 169 -LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
            + AYV+LG +Y+ GIPVAA LGF  KLRG   WIG+Q GAF QT+LL I+T+R NW+ Q
Sbjct: 405 HIGAYVNLGAFYLCGIPVAAVLGFWLKLRGMGLWIGIQVGAFTQTVLLSIVTSRVNWDNQ 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.68	0.353	0.425	6e-32
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.716	0.369	0.414	2e-31
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.68	0.352	0.430	6.9e-31
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.748	0.383	0.389	1.1e-30
TAIR|locus:2037848	487	AT1G15160 "AT1G15160" [Arabido	0.688	0.353	0.398	5.5e-28
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.7	0.360	0.387	1.7e-26
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.712	0.369	0.380	3.5e-26
TAIR|locus:2050230	483	AT2G04100 "AT2G04100" [Arabido	0.74	0.383	0.361	6.3e-23
TAIR|locus:2050180	476	AT2G04050 "AT2G04050" [Arabido	0.736	0.386	0.352	9.9e-23
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.732	0.384	0.360	1.3e-22

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 77/181 (42%), Positives = 113/181 (62%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNP+LETS  SVCL T+ T+ +IP  + AAA  R SN                 + LA  
Sbjct:   288 PNPQLETSVLSVCLQTISTMYSIPLAIAAAASTRISNELGAGNSRAAHIVVYAAMSLAVI 347

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR------ 170
             +++IV  +LL  R++F ++ S+ KE +D+V  MA L+ +S++LD+L+ VLS +       
Sbjct:   348 DALIVSMSLLIGRNLFGHIFSSDKETIDYVAKMAPLVSISLMLDALQGVLSGIARGCGWQ 407

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                AY++LG +Y++GIP+AA+L F   L+G   WIG+QAGA LQT+LL ++T  TNWE Q
Sbjct:   408 HIGAYINLGAFYLWGIPIAASLAFWIHLKGVGLWIGIQAGAVLQTLLLALVTGCTNWESQ 467

Query:   228 A 228
             A
Sbjct:   468 A 468

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 80/193 (41%), Positives = 113/193 (58%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNPKLE S  SVCL+T  +L  IP+ LGAAA  R +N                 + +   
Sbjct:   280 PNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANELGAGNPKQARMAVYTAMVITGV 339

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR------ 170
             ES++V A +  +R+VF Y+ S+  EVVD+V++MA L+ LSV+ D+L   LS +       
Sbjct:   340 ESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAPLLSLSVIFDALHAALSGVARGSGRQ 399

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                AYV+L  YY+FGIP A  L F FK+RG   WIG+  G+ +Q +LL +I   TNW+KQ
Sbjct:   400 DIGAYVNLAAYYLFGIPTAILLAFGFKMRGRGLWIGITVGSCVQAVLLGLIVILTNWKKQ 459

Query:   228 AR---ERILEERF 237
             AR   ER++ + +
Sbjct:   460 ARKARERVMGDEY 472

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 78/181 (43%), Positives = 109/181 (60%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNP+LETS  SVCL T  T+ +I   + AAA  R SN                 + LA  
Sbjct:   289 PNPQLETSVLSVCLQTTATVYSIHLAIAAAASTRISNELGAGNSRAANIVVYAAMSLAVV 348

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR------ 170
             E +I+  +LL  R+VF +V S+ KE +D+V  MA L+ +S++LD L+ VLS +       
Sbjct:   349 EILILSTSLLVGRNVFGHVFSSDKETIDYVAKMAPLVSISLILDGLQGVLSGIARGCGWQ 408

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                AY++LG +Y++GIP+AA+L F   L+G   WIG+QAGA LQT+LL ++T  TNWE Q
Sbjct:   409 HIGAYINLGAFYLWGIPIAASLAFWIHLKGVGLWIGIQAGAVLQTLLLTLVTGCTNWESQ 468

Query:   228 A 228
             A
Sbjct:   469 A 469

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 79/203 (38%), Positives = 117/203 (57%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNP+LETS  S+C  T+    +IP  + AAA  R SN                 + LA  
Sbjct:   285 PNPQLETSVLSICFETLSITYSIPLAIAAAASTRISNELGAGNSRAAHIVVYAAMSLAVM 344

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR------ 170
             ++++V  +LL  RHVF +V S+ K+ +++V  MA L+ +S++LDSL+ VLS +       
Sbjct:   345 DALMVSMSLLAGRHVFGHVFSSDKKTIEYVAKMAPLVSISIILDSLQGVLSGVASGCGWQ 404

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                AY++ G +Y++GIP+AA+L F   L+G   WIG+ AGA LQT+LL ++T  TNW+ Q
Sbjct:   405 HIGAYINFGAFYLWGIPIAASLAFWVHLKGVGLWIGILAGAVLQTLLLALVTGCTNWKTQ 464

Query:   228 ARER-----ILEERFSPENRLPI 245
             ARE      +  E    E+ LPI
Sbjct:   465 AREARERMAVAHESELTESELPI 487

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 5.5e-28, P = 5.5e-28
 Identities = 73/183 (39%), Positives = 107/183 (58%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNP+LETS  SVCL T+    +IP  + AAA  R SN                 + LA  
Sbjct:   285 PNPQLETSVLSVCLQTLSMTYSIPLAIAAAASTRISNELGAGNSRAAHIVVYAAMSLAVV 344

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR------ 170
             ++++V  +LL  +++   V S+ K  +D+V  MA L+ +S++LDSL+ VLS +       
Sbjct:   345 DALMVGTSLLAGKNLLGQVFSSDKNTIDYVAKMAPLVSISLILDSLQGVLSGVASGCGWQ 404

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                AY++ G +Y++GIP+AA+L F   L+G   WIG+ AGA LQT+LL ++T   NWE Q
Sbjct:   405 HIGAYINFGAFYLWGIPIAASLAFWVHLKGVGLWIGIIAGAVLQTLLLALVTGCINWENQ 464

Query:   228 ARE 230
             ARE
Sbjct:   465 ARE 467

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 74/191 (38%), Positives = 108/191 (56%)

Query:    59 PNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLAN 115
             PN KLETS  S+CL T+ +L+  I + +GAAA    SN                 IFL  
Sbjct:   289 PNSKLETSVLSICL-TMSSLHYVIVNAIGAAASTHVSNKLGAGNPKAARSAANSAIFLGM 347

Query:   116 SESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR----- 170
              ++ IV  +L + R  + Y+ SN  EV D+V  +   +CLS+ +DS   VLS +      
Sbjct:   348 IDAAIVSISLYSYRRNWAYIFSNESEVADYVTQITPFLCLSIGVDSFLAVLSGVARGTGW 407

Query:   171 ----AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK 226
                 AY ++G+YY+ GIPV + L F+ KLRG   WIG+  G+ LQTI+L ++T  TNWE+
Sbjct:   408 QHIGAYANIGSYYLVGIPVGSILCFVVKLRGKGLWIGILVGSTLQTIVLALVTFFTNWEQ 467

Query:   227 Q---ARERILE 234
             +   AR+R++E
Sbjct:   468 EVAKARDRVIE 478

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 73/192 (38%), Positives = 105/192 (54%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PN KLETS  S+CL T      + +G+G AA    +N                 I +A  
Sbjct:   282 PNSKLETSVISICLTTSSLHYNLVNGIGDAASTNVANELGAGNPRGARDSAAAAIIIAAV 341

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSAL-R----- 170
             ES+IV ++L  SR V+ Y  SN +EV+ +V  +  ++C+S+++DS  TVLS + R     
Sbjct:   342 ESVIVSSSLFLSRSVWPYAYSNVEEVISYVTDITPILCISILMDSFLTVLSGIVRGTGWQ 401

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                AYV++ +YYV GIPV   L F     G   W GL  G+ LQT++LF++   TNW K+
Sbjct:   402 KIGAYVNITSYYVIGIPVGLLLCFHLHFNGKGLWAGLVTGSTLQTLILFLVIGFTNWSKE 461

Query:   228 A---RERILEER 236
             A   RERI +E+
Sbjct:   462 AIKARERIGDEK 473

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 6.3e-23, P = 6.3e-23
 Identities = 72/199 (36%), Positives = 98/199 (49%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNPKLETS  S+CL T      IP G+GAA   R SN                 IFL   
Sbjct:   284 PNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSNELGAGNPEVARLAVFAGIFLWFL 343

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR------ 170
             E+ I    L   R +F Y  SN+KEVVD+V  ++ L+C+S ++D    VL  +       
Sbjct:   344 EATICSTLLFICRDIFGYAFSNSKEVVDYVTELSPLLCISFLVDGFSAVLGGVARGSGWQ 403

Query:   171 ---AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
                A+ ++  YY+ G PV   LGF   + G   WIG+  G+  Q I+L I+T   +W +Q
Sbjct:   404 HIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGVVVGSTAQGIILAIVTACMSWNEQ 463

Query:   228 A---RERILEERFSPENRL 243
             A   R+RI+    S  N L
Sbjct:   464 AAKARQRIVVRTSSFGNGL 482

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 9.9e-23, P = 9.9e-23
 Identities = 69/196 (35%), Positives = 94/196 (47%)

Query:    59 PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLANS 116
             PNPKLETS  S+CL T      IP G+ AA   R SN                 + L   
Sbjct:   281 PNPKLETSVLSICLTTASLHYVIPGGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLV 340

Query:   117 ESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR---AYV 173
             ES      L   R++  Y  SN+KEVVD+V  +  L+CLS +LD    VL+ +     + 
Sbjct:   341 ESAFFSTLLFTCRNIIGYAFSNSKEVVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQ 400

Query:   174 DLGT------YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227
              +G       YY+ G PV   L F  +L G   W G+  G+ +Q I+L  +T   NW++Q
Sbjct:   401 HIGALNNVVAYYLVGAPVGVYLAFNRELNGKGLWCGVVVGSAVQAIILAFVTASINWKEQ 460

Query:   228 ARERILEERFSPENRL 243
             A E+  +   S ENRL
Sbjct:   461 A-EKARKRMVSSENRL 475

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 71/197 (36%), Positives = 99/197 (50%)

Query:    59 PNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTXXXXXXXXXXXXXXXXIFLAN 115
             PNPKLETS  S+CL T+ TL+  IP G+ AA   R SN                 + L  
Sbjct:   281 PNPKLETSVLSICL-TIGTLHYVIPSGVAAAVSTRVSNKLGAGNPQVARVSVLAGLCLWL 339

Query:   116 SESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSALR----- 170
              ES      L   R++  Y  SN+KEVVD+V  ++ L+CLS +LD L  VL+ +      
Sbjct:   340 VESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLCLSFILDGLTAVLNGVARGCGW 399

Query:   171 ----AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK 226
                 A +++  YY+ G PV   L F  +  G   W G+  G+ +Q  LL I+T   NW++
Sbjct:   400 QHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVGSAVQATLLAIVTASMNWKE 459

Query:   227 QARERILEERFSPENRL 243
             QA E+  +   S EN L
Sbjct:   460 QA-EKARKRIISTENGL 475

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	8e-44
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	5e-10
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	1e-07
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-07
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	2e-06
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	0.001
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  152 bits (387), Expect = 8e-44
 Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 12/193 (6%)

Query: 49  ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106
           E+L LL+G LP   +  +A S+CL T   L  IP G+  AA  R  N LGAG  K A +A
Sbjct: 245 EILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLA 303

Query: 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166
               + L+    ++V   LL  R V+ Y+ ++ +EV+  V  +  ++ L  + D L+ VL
Sbjct: 304 AIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGLQAVL 363

Query: 167 S---------ALRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFI 217
           S          L AYV+L  YY+ G+PV   L F+  L     WIGL AG  LQ ++L +
Sbjct: 364 SGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAVILLL 423

Query: 218 ITNRTNWEKQARE 230
           I  RT+W+K+A +
Sbjct: 424 IILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 14/204 (6%)

Query: 42  LFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGK 99
           L  S    LLTL    L    L  +A  + L     +   P G+  A        LGAG 
Sbjct: 255 LSESLGFLLLTLFVARLGTVAL--AAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGN 312

Query: 100 LKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVL 159
            K A  A +  + L+   ++++   LL  R     + +   EV+     +  +  L    
Sbjct: 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPF 372

Query: 160 DSLKTVL-SALRA--------YVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFL 210
           D ++ VL   LR          + L +Y+ F +P+A  LGF F L     WIG      L
Sbjct: 373 DGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLIL 431

Query: 211 QTILLFIITNRTNWEKQARERILE 234
           + ILL +   R  W ++A     +
Sbjct: 432 RAILLLLRLRRGRWRRKAVAAASK 455

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 81  IPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSN 138
           +P G+  AA  R    LGAG    A  A    + L    + +    LL        + +N
Sbjct: 280 VPLGISMAATVRVGFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTN 339

Query: 139 TKEVVDHVRTMATLMCLSVVLDSLKTVLS-ALRAYVD--------LGTYYVFGIPVAAAL 189
              V+    ++     L  + D ++ V + ALR Y D        L +Y+  G+P+   L
Sbjct: 340 DPAVIALAASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPLGYLL 399

Query: 190 GFLFKLRGPAPWIGLQAGAFLQTILLFI 217
            F   L     WIGL  G  L  ILL  
Sbjct: 400 AFTTGLGAFGVWIGLIIGLALAAILLLW 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 84  GLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNS-RHVFFYVLSNTKEV 142
            + A+      LGAG    A    K  + L     M ++  LL         + +   EV
Sbjct: 282 SMAASTLVGQNLGAGDPDEARRYGKRALRLG-VLFMGLLGLLLFIFAPPLASLFTPDPEV 340

Query: 143 VDHVRTMATLMCLSVVLDSLKTVLS-ALRA--------YVDLGTYYVFGIPVAAALGFLF 193
           ++       ++ LS    ++  VLS ALR          ++L + ++  +P+A  LGF+ 
Sbjct: 341 IELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFVL 400

Query: 194 KLRGPAPWIGLQAGAFLQTILLFIITNRTNW 224
            L     W+ +     ++ ILL     +  W
Sbjct: 401 GLGLTGIWLAMFVDTIVRAILLLYRFRKGKW 431

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 42  LFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAA--ARFSNTLGAGK 99
           +  S S  LL LL   L    +  +A  + L     L     G G A        LGAG 
Sbjct: 230 ILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGD 287

Query: 100 LKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVR 147
            K A    +  + L+    +++   L+  R     + +N  EV++   
Sbjct: 288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAA 335

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 15/146 (10%)

Query: 95  LGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMC 154
           +GAG    A   V   + +    S+ V   L   R     + ++  E++       TL+ 
Sbjct: 295 VGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEII---ALGKTLLL 351

Query: 155 LSVVLDSLKTV----LSALRA--------YVDLGTYYVFGIPVAAALGFLFKLRGPAPWI 202
           +S++L+  +      + +LRA         + + + +   +P+A  LG +  L     WI
Sbjct: 352 ISILLEPGRAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLGLLGVWI 411

Query: 203 GLQAGAFLQTILLFIITNRTNWEKQA 228
              A  +++ I++        W K+A
Sbjct: 412 AFAADEWVRGIIMLWRWRSGKWIKKA 437

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 21/153 (13%)

Query: 81  IPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSN 138
           +P  L  A   R    LGAG+   A       + +    +++    L+  R     + ++
Sbjct: 290 LPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD 349

Query: 139 TKEVVDHVRTMA-TLMCLSVVL---DSLKTVLS-ALRAYVD--------LGTYYVFGIPV 185
             EVV     +A  L+  + +    D+++ + S ALR Y D           Y+V G+P+
Sbjct: 350 DPEVV----ALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPL 405

Query: 186 AAALGFLFKLRGPAP-WIGLQAGAFLQTILLFI 217
              L     + GP   WIGL  G     ILL +
Sbjct: 406 GYILALTDPM-GPFGFWIGLIIGLTAAAILLLL 437

Length = 456

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.96
PRK10189	478	MATE family multidrug exporter; Provisional	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.95
PRK01766	456	multidrug efflux protein; Reviewed	99.94
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.92
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.92
PRK10189	478	MATE family multidrug exporter; Provisional	99.89
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.88
PRK00187	464	multidrug efflux protein NorA; Provisional	99.88
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.88
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.87
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.86
PRK01766	456	multidrug efflux protein; Reviewed	99.83
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.78
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.74
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.64
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.43
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.35
PRK15099	416	O-antigen translocase; Provisional	99.35
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.25
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.1
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.07
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.03
PRK15099	416	O-antigen translocase; Provisional	98.81
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.67
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.55
PRK10459	492	colanic acid exporter; Provisional	98.46
COG2244	480	RfbX Membrane protein involved in the export of O-	98.34
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	97.44
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	97.22
COG0728	518	MviN Uncharacterized membrane protein, putative vi	97.03
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	96.1
PRK10459	492	colanic acid exporter; Provisional	96.01
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	95.89
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	95.22
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	92.62
COG2244	480	RfbX Membrane protein involved in the export of O-	90.02

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.96  E-value=6.3e-28  Score=222.79  Aligned_cols=194  Identities=26%  Similarity=0.344  Sum_probs=180.1

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      +.+.|.++....+..++.+.+.+++++|  ++++|||+++.++.++.++++.|+++|+  ++||++||||++|+|+..+.
T Consensus       245 ~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~  322 (455)
T COG0534         245 RLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARL  322 (455)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4555555555566667888899999999  5689999999999999999999999999  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV  180 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~  180 (250)
                      ++.++..++++.+++++++++++.++|++|+|+.+.+.+++++.++++++++++.+..|         .+++.++.++|+
T Consensus       323 ~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~  402 (455)
T COG0534         323 ALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWG  402 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888766         899999999999


Q ss_pred             hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 044850          181 FGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA  228 (250)
Q Consensus       181 i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~  228 (250)
                      +++|+.|++.+.. +|..|+|+++..++.++.++..+++++.+|+++.
T Consensus       403 ~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (455)
T COG0534         403 FRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA  449 (455)
T ss_pred             HHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999998765 9999999999999999999999999999999886

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.96  E-value=7.9e-28  Score=223.52  Aligned_cols=200  Identities=15%  Similarity=0.129  Sum_probs=182.2

Q ss_pred             chhHHHHHHhHhHHHHHHHHHHHHH----HHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCC
Q 044850           26 LDEEKKEESLREGNVALFFSGSEEL----LTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGK   99 (250)
Q Consensus        26 ~~~~~~~~~l~~g~~~~l~~~~~~i----~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~   99 (250)
                      +|....+..++.|+|..+|...+.+    .+.+++++|  +.++||++++.++.++.+++..|+++|+  ++||++||||
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~  330 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQ  330 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3555556777888888777766554    455678899  5689999999999999999999999999  9999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HH
Q 044850          100 LKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LR  170 (250)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~  170 (250)
                      ++|+|+..+.+..++.++++..+++++++++++.++|++|+|+++.+..++++.++++++++++.+..+         .+
T Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~  410 (478)
T PRK10189        331 IAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYA  410 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999887665         88


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 044850          171 AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ  227 (250)
Q Consensus       171 ~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~  227 (250)
                      +.+++.++|++++|+.|++.+..++|+.|+|++..+++.+++++..+++++++|+++
T Consensus       411 ~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~  467 (478)
T PRK10189        411 MWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK  467 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence            999999999999999999988888999999999999999999999999999999984

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.95  E-value=2.3e-25  Score=206.39  Aligned_cols=202  Identities=19%  Similarity=0.231  Sum_probs=175.2

Q ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850           31 KEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVK  108 (250)
Q Consensus        31 ~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~  108 (250)
                      .+.++|.+++..++...+.+.+.+++++|  +.++||++++.++..+.+++..|+++|+  ++||++|+||++|++++.+
T Consensus       239 l~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~  316 (464)
T PRK00187        239 WRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGR  316 (464)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            34555555656667777888899999999  5689999999999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHhHhhhCC--cH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHH
Q 044850          109 AVIFLANSESMIVIATLLNSRHVFFYVLSN--TK---EVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVD  174 (250)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~--~~---ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~  174 (250)
                      .++.++.+++++.+++++++++++.++|++  |+   |+.+.+..++++.+.++++++++.++++         .++.++
T Consensus       317 ~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~  396 (464)
T PRK00187        317 VGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIG  396 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHH
Confidence            999999999999999999999999999974  44   7899999999999999999998887765         899999


Q ss_pred             HHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh--ccHHHHH--HHHHhh
Q 044850          175 LGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR--TNWEKQA--RERILE  234 (250)
Q Consensus       175 ~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~--~~W~~~~--~~r~~~  234 (250)
                      +.+.|++++|+.|++.+++++|+.|+|+++.+++++.+++...+++.  .+|++++  ||.++-
T Consensus       397 ~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (464)
T PRK00187        397 LACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKARASEAVAL  460 (464)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence            99999999999999998888999999999999999998887766643  2333333  555543

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.94  E-value=1.7e-24  Score=199.81  Aligned_cols=195  Identities=21%  Similarity=0.253  Sum_probs=176.0

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      +.++|..+...++...+.+.+.+++++|  +.++||++++.++.++.++++.|++.|.  ++||++|+||++++|+..+.
T Consensus       243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~  320 (456)
T PRK01766        243 KLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYI  320 (456)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3444555555666666777888899999  4579999999999999999999999998  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV  180 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~  180 (250)
                      ++.++..++++.+++++.+++++.++|++|+|+.+.+..++++..++.++++++.+.++         .++.++..+.|+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~  400 (456)
T PRK01766        321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV  400 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887766         889999999999


Q ss_pred             hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 044850          181 FGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA  228 (250)
Q Consensus       181 i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~  228 (250)
                      +++|..|++.+.+++|+.|+|+++.+++++.+++..+++++.+|+...
T Consensus       401 ~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (456)
T PRK01766        401 LGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQPSA  448 (456)
T ss_pred             HHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999887889999999999999999999999998888877543

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.92  E-value=3.7e-23  Score=190.52  Aligned_cols=185  Identities=13%  Similarity=0.063  Sum_probs=153.1

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      +.+.|.+++...+..++.+.+.+++++|  +.++|||+++.++.++.+++..|+++|+  ++||++|+||++|+|+..+.
T Consensus       236 ~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~  313 (441)
T PRK10367        236 ALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRA  313 (441)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3455555555666677888899999999  4589999999999999999999999999  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHH-------HHHH-HHHhhh----HHHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVV-------LDSL-KTVLSA----LRAYVDLGT  177 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~-------~~~i-~~~~~g----~~~~~~~~~  177 (250)
                      +..++.+++++.+++++.+++.+.++|++|+|+++.+.+++++.++..+       ++++ +...+|    .++.++.++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~  393 (441)
T PRK10367        314 ACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAG  393 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998875422       2332 111221    777888887


Q ss_pred             HHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 044850          178 YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK  226 (250)
Q Consensus       178 ~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~  226 (250)
                      .|+..++.       +.+|+.|+|++..+++.++++++.++++|. |+|
T Consensus       394 ~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~  434 (441)
T PRK10367        394 FALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN  434 (441)
T ss_pred             HHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence            77432221       257999999999999999999998877765 865

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.92  E-value=9.7e-23  Score=188.28  Aligned_cols=196  Identities=12%  Similarity=0.133  Sum_probs=166.0

Q ss_pred             cchhHHHHHHhHhHHHHHHHHHHH----HHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCC
Q 044850           25 TLDEEKKEESLREGNVALFFSGSE----ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAG   98 (250)
Q Consensus        25 ~~~~~~~~~~l~~g~~~~l~~~~~----~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag   98 (250)
                      ++|....+..++.|.|..++...+    .+.+.+.+++|+ +.++|+++++.++..+.+++..|+++|+  ++||++|||
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~  305 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGAR  305 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence            455555566778888887776554    444556778884 3579999999999999999999999999  999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 044850           99 KLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSN-TKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------  168 (250)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~-~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------  168 (250)
                      |+||+|+..+.++.+++.++++.+++++.+++++.++|++ |+|+++.+..|+++.++++++++++.+..+         
T Consensus       306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~  385 (453)
T PRK09575        306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG  385 (453)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            9999999999999999999999999999999999999995 899999999999999999999998876654         


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHH
Q 044850          169 LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWE  225 (250)
Q Consensus       169 ~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~  225 (250)
                      .++..+..+ +++.+|..|++..  .+|+.|+|+++.+++++..++..+++++ +|+
T Consensus       386 ~~~~~~~~~-~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~  438 (453)
T PRK09575        386 KALFISIGN-MLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR-DVK  438 (453)
T ss_pred             HHHHHHHHh-HHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence            677777654 5678999988754  3799999999999999998888776654 444

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.89  E-value=3.4e-21  Score=179.16  Aligned_cols=187  Identities=12%  Similarity=0.082  Sum_probs=161.1

Q ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850           31 KEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVK  108 (250)
Q Consensus        31 ~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~  108 (250)
                      .+.++|..+.+.++.....+++.+++++|  +.++||++++.++..+.+.+..|+++|+  ++||++|+||++|++++.+
T Consensus        32 l~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~  109 (478)
T PRK10189         32 TPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAAR  109 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            34555555555566666778889999999  5689999999999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHhHhhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850          109 AVIFLANSESMIVIATLLNSRHVFFYVLS--NTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT  177 (250)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~--~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~  177 (250)
                      .++.+++.++++.+++.+++++++.++|+  .|+|+.+.+.+|+++..++.++.++..++++         .++.+++. 
T Consensus       110 ~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~-  188 (478)
T PRK10189        110 QSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGG-  188 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHH-
Confidence            99999999999999999999999999995  7999999999999999999999887766554         67777766 


Q ss_pred             HHHhhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 044850          178 YYVFGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITN  220 (250)
Q Consensus       178 ~~~i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~  220 (250)
                      .+++.+++.+++.+.    +++|+.|+|+|+.+++++..++..+++.
T Consensus       189 ~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~  235 (478)
T PRK10189        189 MNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM  235 (478)
T ss_pred             HHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446778888888764    3789999999999999999888766554

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.88  E-value=1.8e-20  Score=172.64  Aligned_cols=191  Identities=11%  Similarity=0.041  Sum_probs=168.6

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHH
Q 044850           29 EKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA  106 (250)
Q Consensus        29 ~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~  106 (250)
                      +..+...|..+.+.++.....+++.+++++|. ++++||.+++.++.++.+.+..|++.++  ++||++|+||++|+++.
T Consensus        10 ~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~   88 (441)
T PRK10367         10 ALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARA   88 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34567778888888888888899999999953 5579999999999999999999999998  99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850          107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT  177 (250)
Q Consensus       107 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~  177 (250)
                      .+.++.++.+.+++..++...+.+++.++++.|+|+.+.+.+|+++..++.++..+..++++         .++..+.++
T Consensus        89 ~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~  168 (441)
T PRK10367         89 LVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVG  168 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            99999999999999988888889999999999999999999999999999888777665544         778888777


Q ss_pred             HHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          178 YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       178 ~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      . ++.++++|++.+.+++|+.|+|+|+.+++++..++..++++|
T Consensus       169 ~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        169 N-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             H-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 678999999988889999999999999999998887776654

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.88  E-value=1.5e-20  Score=174.32  Aligned_cols=186  Identities=15%  Similarity=-0.014  Sum_probs=158.8

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      +.++|..+....+.....+++.+++++|  ++++||++++.++.++.+++..|+++|+  ++||++|+||++|++++.+.
T Consensus        14 ~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~   91 (464)
T PRK00187         14 RLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQA   91 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            4566666666677777888899999999  5689999999999999999999999998  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV  180 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~  180 (250)
                      ++.++++++++..++.+ +.+++.++|+.|+|+.+.+.+|+++..++.++.++...+++         .+++.++++.. 
T Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~-  169 (464)
T PRK00187         92 GLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAV-  169 (464)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-
Confidence            99999999998887766 56889999999999999999999999998888777666544         66777766554 


Q ss_pred             hhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          181 FGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       181 i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      +.++++|++.+.    +++|+.|+|+|++++++...++..+++++
T Consensus       170 ~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~  214 (464)
T PRK00187        170 ANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR  214 (464)
T ss_pred             HHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            488999888764    25899999999999998888777666654

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.88  E-value=1.5e-22  Score=187.09  Aligned_cols=211  Identities=35%  Similarity=0.487  Sum_probs=197.0

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHH
Q 044850           29 EKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA  106 (250)
Q Consensus        29 ~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~  106 (250)
                      ...+..+|.+++.++|+|.+++..+..+.+++.+.++++.+|+.++....++++.|++.|+  ++++.+|+||++++|..
T Consensus       248 ~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~  327 (473)
T KOG1347|consen  248 PFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVS  327 (473)
T ss_pred             HHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhH
Confidence            4457889999999999999999999999999977899999999999999999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850          107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT  177 (250)
Q Consensus       107 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~  177 (250)
                      .+.+...++..+...+..++.+++.+..+|++|+|+.+...+..++++.+.+.++.+.+..|         ++.++|...
T Consensus       328 ~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~  407 (473)
T KOG1347|consen  328 AKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVA  407 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999887         888999999


Q ss_pred             HHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH---HHHHhhccCCC
Q 044850          178 YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA---RERILEERFSP  239 (250)
Q Consensus       178 ~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~---~~r~~~~~~~~  239 (250)
                      ++++++|+...+.+..++|+.|+|.++..+..+....+.....+.||+++.   ++|...+.+.+
T Consensus       408 yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~  472 (473)
T KOG1347|consen  408 YYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV  472 (473)
T ss_pred             eeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence            999999999999988899999999999999888888888888899999998   66666665543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.87  E-value=4.4e-20  Score=170.60  Aligned_cols=194  Identities=10%  Similarity=-0.015  Sum_probs=167.9

Q ss_pred             chhHHHHHHhHhHHHHHHHHHHHHHHHHHhhcC-CCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHH
Q 044850           26 LDEEKKEESLREGNVALFFSGSEELLTLLSGFL-PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKA  102 (250)
Q Consensus        26 ~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~-G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~  102 (250)
                      ..++..+..+|..+.+..+.....+++.+++++ |  ++++|+++++.++.++.+.+..|++.|.  ++||++|+||+||
T Consensus        10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   87 (453)
T PRK09575         10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK   87 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence            334445566777777777777788899999996 7  5689999999999999999999998888  9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHH
Q 044850          103 ASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYV  173 (250)
Q Consensus       103 a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~  173 (250)
                      +++..+.++.++.+++++.+++.+.+++++..+|+.|+|+.+.+.+|+++..++.++.++....++         .++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~  167 (453)
T PRK09575         88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL  167 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888776654433         67777


Q ss_pred             HHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          174 DLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       174 ~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      +..+. ++.++++|++.+.+++|+.|+|+++.+++++..++.+++++++
T Consensus       168 ~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~  215 (453)
T PRK09575        168 MVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS  215 (453)
T ss_pred             HHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77664 7789999999888889999999999999999998877776543

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.86  E-value=1.5e-19  Score=167.11  Aligned_cols=195  Identities=19%  Similarity=0.169  Sum_probs=171.5

Q ss_pred             chhHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHH
Q 044850           26 LDEEKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAA  103 (250)
Q Consensus        26 ~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a  103 (250)
                      ..+...+...|+-+.+..+.....+++++++++|  ++++||.++++++..+.+.+..|++.|+  +++|++||||++++
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~   92 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA   92 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence            3344445666666666677777888999999999  6799999999999999999999999999  99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHH
Q 044850          104 SVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVD  174 (250)
Q Consensus       104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~  174 (250)
                      ++..+.++.+++.++++.+++.+.+++++..+++.++|+.+.+.+|+++...+.++..+..++++         .+++++
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~  172 (455)
T COG0534          93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL  172 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888776655         677777


Q ss_pred             HHHHHHhhHHHHHHHHHH-hC-CCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 044850          175 LGTYYVFGIPVAAALGFL-FK-LRGPAPWIGLQAGAFLQTILLFIITNRTN  223 (250)
Q Consensus       175 ~~~~~~i~ipl~~ll~~~-~~-~g~~G~w~a~~~~~~~~~i~~~~~~~~~~  223 (250)
                      .++. +..+.++|++.+. ++ +|+.|+.+|+.+++++..++.+++++|.+
T Consensus       173 ~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~  222 (455)
T COG0534         173 LLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK  222 (455)
T ss_pred             HHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6655 4677888998887 46 99999999999999999999999888765

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.83  E-value=5.9e-18  Score=156.29  Aligned_cols=188  Identities=15%  Similarity=0.111  Sum_probs=161.4

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      +.+.|..+....++....+++.+++++|  +.++||++++.++..+.+.+..|++.|.  ++||++|+||++++++..+.
T Consensus        16 ~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~   93 (456)
T PRK01766         16 ALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQ   93 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4556666666666667778889999999  5589999999999988889999999988  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV  180 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~  180 (250)
                      ++.+++.++++++++++++++++.++|+.|+|+.+.+..|+++..++.++.++..++++         .++..+.++. +
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-i  172 (456)
T PRK01766         94 GLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGL-L  172 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-H
Confidence            99999999999999999999999999999999999999999999998888877666554         6677776665 5


Q ss_pred             hhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          181 FGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       181 i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      +.+++++++.+.    +.+|+.|+|+++.+++++..++..++++|.
T Consensus       173 vni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~  218 (456)
T PRK01766        173 INIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA  218 (456)
T ss_pred             HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            688888887753    468999999999999999999887777654

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.78  E-value=4.1e-19  Score=141.13  Aligned_cols=151  Identities=21%  Similarity=0.264  Sum_probs=142.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHH
Q 044850           36 REGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFL  113 (250)
Q Consensus        36 ~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~  113 (250)
                      |+.++..++...+.+.+.+++++|  ++++|+++++.++.++...+..|+++|.  ++||++|+||++|+++..+.++.+
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~   78 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL   78 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence            677888899999999999999998  5689999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHH
Q 044850          114 ANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIP  184 (250)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ip  184 (250)
                      +++++++.+++.+.+++++.++|++|+|+.+.+.+|+++..++.++.++....++         .+++.++.+.|++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  158 (162)
T PF01554_consen   79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP  158 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred             chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999988877665         7889999999999999


Q ss_pred             HHHH
Q 044850          185 VAAA  188 (250)
Q Consensus       185 l~~l  188 (250)
                      ++|+
T Consensus       159 l~yl  162 (162)
T PF01554_consen  159 LAYL  162 (162)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9874

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.74  E-value=1.3e-15  Score=135.00  Aligned_cols=183  Identities=19%  Similarity=0.162  Sum_probs=155.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHH
Q 044850           36 REGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFL  113 (250)
Q Consensus        36 ~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~  113 (250)
                      |..+..........+.+.+++++|  +.++++++++.++..+...+..|++++.  .+++++|+||++++++..+.+..+
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~   78 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL   78 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            345566667777788899999999  4579999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHH
Q 044850          114 ANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIP  184 (250)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ip  184 (250)
                      ...++++.+++.+++++++..+|+.|++..+.+..++++..+..++.+++.++.+         .++..+.++. ++.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~  157 (342)
T TIGR00797        79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII  157 (342)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence            9999999999999999999999998999999999999999999998887665544         5555555544 45667


Q ss_pred             HHHHHHH-HhC-CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          185 VAAALGF-LFK-LRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       185 l~~ll~~-~~~-~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      ..+++.+ .++ +|..|+++++.+++++..++..++++|
T Consensus       158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777665 456 789999999999999998887766654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.64  E-value=9.4e-14  Score=129.36  Aligned_cols=186  Identities=17%  Similarity=0.048  Sum_probs=151.2

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHH-hHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNT-IPDGLGAAA--RFSNTLGAGKLKAASVAVK  108 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~-~~~gl~~a~--lvg~~~Gag~~~~a~~~~~  108 (250)
                      +.+.|..+....+.....+...+.+.+|.  .++++++.+.++..+... +..+++++.  .+||++|+||++++|+..+
T Consensus       227 ~~~~p~~~~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~  304 (502)
T TIGR01695       227 KLFLPTTLGSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLN  304 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34444444444555666677777777774  478999999999988765 567889888  9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHhHhhhCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHH
Q 044850          109 AVIFLANSESMIVIATLLNSRHVFFYVLSN----TKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDL  175 (250)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~----~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~  175 (250)
                      +++.....+++..++.++.+++++..+|..    |+|..+.+..++++.++..++.+++.++.+         .++..+.
T Consensus       305 ~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~  384 (502)
T TIGR01695       305 QGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSV  384 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHH
Confidence            999999999999999999999999999865    678888899999999999999888776554         5666666


Q ss_pred             HHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          176 GTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       176 ~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      ... ++.+|+.+++..  .+|..|+|+++.+++.+..++..++++|.
T Consensus       385 ~~~-~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       385 ISV-VLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             HHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            654 567888877753  57999999999999999998887777653

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.43  E-value=3.6e-11  Score=111.59  Aligned_cols=186  Identities=13%  Similarity=0.002  Sum_probs=136.5

Q ss_pred             HHHHhHhHHHHHH----HHHHHHHHHHHhhcC----CCc-hhhhhHH----HHHHHHHHHHHHhHHhHHHHH--HHHHHh
Q 044850           31 KEESLREGNVALF----FSGSEELLTLLSGFL----PNP-KLETSAP----SVCLATVYTLNTIPDGLGAAA--RFSNTL   95 (250)
Q Consensus        31 ~~~~l~~g~~~~l----~~~~~~i~~~~~~~~----G~~-~~avAa~----~i~~~i~~~~~~~~~gl~~a~--lvg~~~   95 (250)
                      .+..++.+.|..+    ......+++.++++.    |.. ..+.+.+    +++.++..+...+..+++.+.  .+++++
T Consensus       224 ~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~  303 (488)
T TIGR02900       224 LFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAM  303 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555554    444556666666543    210 1122222    234456666666778888888  999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------
Q 044850           96 GAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------  168 (250)
Q Consensus        96 Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g-------  168 (250)
                      |+||.+++++..++++..+..+++..++.+..+++++.++|..+++    +..++++.+...++.+++.+.++       
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  379 (488)
T TIGR02900       304 AKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGK  379 (488)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999876544    46678888888888877665443       


Q ss_pred             --HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          169 --LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       169 --~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                        ..+..+.... ++.+++.+++...+.+|..|+|+++.+++.+..++..++.+|
T Consensus       380 ~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~  433 (488)
T TIGR02900       380 QKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK  433 (488)
T ss_pred             chHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              5666666654 567777777654467899999999999999999888887765

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.35  E-value=2.8e-11  Score=107.14  Aligned_cols=125  Identities=23%  Similarity=0.209  Sum_probs=107.9

Q ss_pred             hhHHHHHHhHhHHHHH----HHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCCh
Q 044850           27 DEEKKEESLREGNVAL----FFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKL  100 (250)
Q Consensus        27 ~~~~~~~~l~~g~~~~----l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~  100 (250)
                      +....+..++.++|.+    .....+.+.+.+++.+|  +.++++|+++.++.++...+..+++++.  .+++++|+||.
T Consensus       211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (342)
T TIGR00797       211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDP  288 (342)
T ss_pred             CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            3333445555555554    44555667777888898  4589999999999999999999999999  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHH
Q 044850          101 KAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLM  153 (250)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~  153 (250)
                      +++++..++++.....+++...+.++++++++.++|++|+++.+.+..++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       289 KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998875

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK15099 O-antigen translocase; Provisional

Probab=99.35  E-value=5.5e-10  Score=102.06  Aligned_cols=185  Identities=11%  Similarity=-0.068  Sum_probs=134.2

Q ss_pred             cchhHHHHHHhHhHHHHHHHH----HHHHHHHHHhh-cCCCchhhhhHHHHHHHHHH-HHHHhHHhHHHHH--HHHHHhc
Q 044850           25 TLDEEKKEESLREGNVALFFS----GSEELLTLLSG-FLPNPKLETSAPSVCLATVY-TLNTIPDGLGAAA--RFSNTLG   96 (250)
Q Consensus        25 ~~~~~~~~~~l~~g~~~~l~~----~~~~i~~~~~~-~~G~~~~avAa~~i~~~i~~-~~~~~~~gl~~a~--lvg~~~G   96 (250)
                      ++|....+..++.|.|...+.    ......+.+++ .+|  +.+++.|+++.++.. +...+..+++++.  .++|+  
T Consensus       208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~--  283 (416)
T PRK15099        208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL--  283 (416)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            445554456667777765554    34555666674 888  558999999999977 4588999999999  99994  


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcH--HHHHHHHHHHHHHHHHHH------HHHHHHHhhh
Q 044850           97 AGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTK--EVVDHVRTMATLMCLSVV------LDSLKTVLSA  168 (250)
Q Consensus        97 ag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~--ev~~~~~~~l~i~~~~~~------~~~i~~~~~g  168 (250)
                       +|.+|.++..++.......+++..++.+++++++++++|..|+  +..+    ++++.++..+      +.+......+
T Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~----~~~~l~~~~~l~~~~~~~g~~~~~~~  358 (416)
T PRK15099        284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRD----LFAWQLVGDVLKVGAYVFGYLVIAKA  358 (416)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             7889999999999999999999999999999999999997665  3333    3333333322      2233333333


Q ss_pred             --HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 044850          169 --LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITN  220 (250)
Q Consensus       169 --~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~  220 (250)
                        .....+.....++.+|+.+++.  +.+|..|+++++.+++.+..++......
T Consensus       359 ~~~~~~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        359 SLRFYILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3444444555667778887765  4679999999999999999987765554

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.25  E-value=5.7e-10  Score=103.62  Aligned_cols=187  Identities=17%  Similarity=0.076  Sum_probs=150.3

Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHH-HHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           33 ESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYT-LNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        33 ~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~-~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      ...|..+....+.....+.+.+++++|  +..+|+.+++++..+. .+.+..|++.+.  ++||++|++++++...+.++
T Consensus        33 ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqr  110 (473)
T KOG1347|consen   33 LALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQR  110 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchhhHHHHH
Confidence            344444444566666778889999999  4589999999877776 588999999999  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh----HHHHHHHHHHHHh
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV----LSA----LRAYVDLGTYYVF  181 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~----~~g----~~~~~~~~~~~~i  181 (250)
                      +..+-...++....+ +.+.+++...+++|+++...+..|.+...+..+..+....    +++    .+.........++
T Consensus       111 s~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~l  189 (473)
T KOG1347|consen  111 SGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVL  189 (473)
T ss_pred             HHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            999999999988855 5567999999999999999999998887766655554332    223    3433333344467


Q ss_pred             hHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          182 GIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       182 ~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      ++|+.|++++..++|..|..++..+++++...+...+....
T Consensus       190 hi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~  230 (473)
T KOG1347|consen  190 HILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS  230 (473)
T ss_pred             HHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence            89999999999999999999999999999999988877643

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.10  E-value=2.7e-08  Score=92.31  Aligned_cols=184  Identities=13%  Similarity=0.148  Sum_probs=124.2

Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHhhc-CCCchhhhhHHHHHHHHHHHHHHhH-HhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850           33 ESLREGNVALFFSGSEELLTLLSGF-LPNPKLETSAPSVCLATVYTLNTIP-DGLGAAA--RFSNTLGAGKLKAASVAVK  108 (250)
Q Consensus        33 ~~l~~g~~~~l~~~~~~i~~~~~~~-~G~~~~avAa~~i~~~i~~~~~~~~-~gl~~a~--lvg~~~Gag~~~~a~~~~~  108 (250)
                      ...+..+....+.....+.+.+.++ +|  +++.++++.+.++..+...+. .|++++.  .++|+.|+||++++++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         4 GTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            3455556666666655666777776 58  457899999999888877765 5899888  9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh-----HHHHHHHHHHH
Q 044850          109 AVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV----LSA-----LRAYVDLGTYY  179 (250)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~----~~g-----~~~~~~~~~~~  179 (250)
                      .+..+++..+++.+++++.+.+.+...+.+|++..    .++++..+..++.++..+    +++     ..+..+.....
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            99999999999999999999999888776666543    345555555555554433    333     33333333321


Q ss_pred             H---hhHHHHHHH-HHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          180 V---FGIPVAAAL-GFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       180 ~---i~ipl~~ll-~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      +   ..+.+.+.+ .+..+.++.|..+++.++.++..++..++++|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~  204 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK  204 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   111111111 111234566777788888888888776655543

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.07  E-value=1.2e-07  Score=87.83  Aligned_cols=185  Identities=13%  Similarity=0.064  Sum_probs=144.5

Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           33 ESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        33 ~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      ...|.-+..........+...+++.++.+  ++++.+.+.++.++.. .+..++++..  ..+++.-+||.++.++..++
T Consensus       203 ~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~  280 (451)
T PF03023_consen  203 LAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRK  280 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            33344333344444555667778888854  7999999999999876 4566888888  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLS----NTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLG  176 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~----~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~  176 (250)
                      ++...+.+++..++.+..++++++++.-    -|+|-.+...+.+.+++++.++.+++.++.-         .++..+..
T Consensus       281 ~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~  360 (451)
T PF03023_consen  281 ALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVI  360 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHH
Confidence            9999999999999999999999998764    3666688888999999999999998766543         44554444


Q ss_pred             HHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          177 TYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       177 ~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      .. ++.+.+.+++  .+.+|..|+.+++.++.++.+++..++++|.
T Consensus       361 ~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  361 SV-VLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             HH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 4555566544  3468999999999999999999988877653

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR01695 mviN integral membrane protein MviN

Probab=99.03  E-value=1.1e-07  Score=88.53  Aligned_cols=179  Identities=15%  Similarity=0.030  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhc-CCCchhhh-hHHHHHHHHHHHHHHhHHhHHHHH-HHHHHhcCCCh-HHHHHHHHHHHHH
Q 044850           38 GNVALFFSGSEELLTLLSGF-LPNPKLET-SAPSVCLATVYTLNTIPDGLGAAA-RFSNTLGAGKL-KAASVAVKAVIFL  113 (250)
Q Consensus        38 g~~~~l~~~~~~i~~~~~~~-~G~~~~av-Aa~~i~~~i~~~~~~~~~gl~~a~-lvg~~~Gag~~-~~a~~~~~~~~~~  113 (250)
                      .+...++.....+...++++ +|+  .+. ++++++.++..+...+..+.|.+. .+.+..|+++. +++++....+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~a~~lG~--~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~~~~~~~   87 (502)
T TIGR01695        10 SLGTLFSRITGFVRDAIIASAFGA--GLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKEARRAFANTVTT   87 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--ChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33344444444466666777 784  467 799999998877766655233333 66666666665 5888877777776


Q ss_pred             HHHHHH-HHHHHHHhchhHhHhhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHh
Q 044850          114 ANSESM-IVIATLLNSRHVFFYVL--SNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVF  181 (250)
Q Consensus       114 ~~~~~i-~~~~~~~~~~~~i~~lf--~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i  181 (250)
                      ....+. +..++.+++.+++..++  +.|++..+.+..|+++..++.++.++..+.++         .++..+.....+ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~-  166 (502)
T TIGR01695        88 LLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIG-  166 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHH-
Confidence            665544 45677888999999988  45778889999999999999999888776655         566666665532 


Q ss_pred             hHHHHHHHHHHhCCCchhHH--HHHHHHHHHHHHHHHHHHhh
Q 044850          182 GIPVAAALGFLFKLRGPAPW--IGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       182 ~ipl~~ll~~~~~~g~~G~w--~a~~~~~~~~~i~~~~~~~~  221 (250)
                      .+.  .++...+++|..|..  +++.++..+..++..++++|
T Consensus       167 ~i~--~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  206 (502)
T TIGR01695       167 VIL--SLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK  206 (502)
T ss_pred             HHH--HHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222  222334678999988  99999999888887766654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=98.81  E-value=1.8e-06  Score=78.96  Aligned_cols=166  Identities=12%  Similarity=0.034  Sum_probs=107.7

Q ss_pred             HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHh-HHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850           48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTI-PDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIAT  124 (250)
Q Consensus        48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~-~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~  124 (250)
                      +...-++...+|  +.+.+..+....+..+...+ ..|+++|.  .++|+  ++|.+++++....+..+++..+++.+++
T Consensus        22 ~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~   97 (416)
T PRK15099         22 LLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALV   97 (416)
T ss_pred             HHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            434445566667  44677777777766655554 66666666  78888  7899999999999999999999999999


Q ss_pred             HHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh-----HHHHHHHHHHHHhhHHHHHHHHHHhCCCch
Q 044850          125 LLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSV-VLDSLKTVLSA-----LRAYVDLGTYYVFGIPVAAALGFLFKLRGP  198 (250)
Q Consensus       125 ~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~-~~~~i~~~~~g-----~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~  198 (250)
                      .+.+.+++...+..+++. .....++.+..+.. +....+.++++     .++..+.... ++.+.+ +++.+. ..|+.
T Consensus        98 ~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~-~~Gv~  173 (416)
T PRK15099         98 FLLAAAPISQGLFGHTDY-QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYR-LGGYE  173 (416)
T ss_pred             HHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHH-Hhcch
Confidence            999999998888777763 33333333322222 22233444444     3333333332 222222 223222 23999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Q 044850          199 APWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       199 G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      |..+++.+++.+..++.+++++|
T Consensus       174 Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        174 GALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988776655543

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.67  E-value=2.3e-05  Score=73.32  Aligned_cols=175  Identities=15%  Similarity=0.036  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 044850           42 LFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSES  118 (250)
Q Consensus        42 ~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~  118 (250)
                      ........+.+.+++.+.++  +++.+..+.++.++-. .+..++++..  ..+++..++|.++.++..+.++.++..++
T Consensus       246 sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~  323 (518)
T COG0728         246 SISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLT  323 (518)
T ss_pred             HHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence            34444556778888888754  6888888888888776 5666777777  99999999999999999999999999999


Q ss_pred             HHHHHHHHhchhHhHhhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--------HHHHHHHHHHHHhhHHH
Q 044850          119 MIVIATLLNSRHVFFYVLS----NTKEVVDHVRTMATLMCLSVVLDSLKTVLS-A--------LRAYVDLGTYYVFGIPV  185 (250)
Q Consensus       119 i~~~~~~~~~~~~i~~lf~----~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~-g--------~~~~~~~~~~~~i~ipl  185 (250)
                      +..++.+..++++++++.-    -+++=.....+.+..++++.++.++.-++. +        .|+.+.++.. ++.+-+
T Consensus       324 lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l  402 (518)
T COG0728         324 LPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILL  402 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHH
Confidence            9999999999999998763    255556777888899998888887754432 2        5555554443 334445


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          186 AAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       186 ~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      ++.+  .+.++..|+.+++.++.++.+.++++.++|
T Consensus       403 ~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k  436 (518)
T COG0728         403 NLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRK  436 (518)
T ss_pred             HHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5333  356788899999999988888888777765

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.55  E-value=1.7e-05  Score=73.69  Aligned_cols=164  Identities=18%  Similarity=0.128  Sum_probs=125.8

Q ss_pred             hhcCCCchhhhhHHHHHHHHHHHHHHhHH-h-HHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 044850           55 SGFLPNPKLETSAPSVCLATVYTLNTIPD-G-LGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRH  130 (250)
Q Consensus        55 ~~~~G~~~~avAa~~i~~~i~~~~~~~~~-g-l~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~  130 (250)
                      +..+|++ ....|+.++.++-.+...... | ++++.  ...+.. +++.+++++..+.........++.++++.+++++
T Consensus         2 A~~fG~s-~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~   79 (451)
T PF03023_consen    2 AYFFGAS-AEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAP   79 (451)
T ss_pred             cHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456764 356789999999999986654 3 56666  777777 8999999999999999999999999999999999


Q ss_pred             HhHhhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHHHHHHHHHHhCCC---
Q 044850          131 VFFYVLS--NTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLR---  196 (250)
Q Consensus       131 ~i~~lf~--~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ipl~~ll~~~~~~g---  196 (250)
                      +++.++.  .|++..+.+.+.+++..++.++.++..++.+         .+.......+..+ +.  .++......|   
T Consensus        80 ~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~-I~--~~~~~~~~~~~~~  156 (451)
T PF03023_consen   80 PIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI-IL--SLLLLSNSWGQEN  156 (451)
T ss_pred             HHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HH--HHHHHHHhcCchH
Confidence            9999995  5789999999999999999999998877766         4444444433221 11  1222233456   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 044850          197 GPAPWIGLQAGAFLQTILLFIITNRTN  223 (250)
Q Consensus       197 ~~G~w~a~~~~~~~~~i~~~~~~~~~~  223 (250)
                      ..++.+|..++..+..++.+...+|..
T Consensus       157 i~~la~g~~~g~~~~~l~~l~~~~~~~  183 (451)
T PF03023_consen  157 IYALAWGVLIGAIIQFLIQLPYLRRFG  183 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            778889999999999988888777643

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10459 colanic acid exporter; Provisional

Probab=98.46  E-value=9.4e-05  Score=68.98  Aligned_cols=180  Identities=13%  Similarity=0.084  Sum_probs=119.6

Q ss_pred             HHHhHhHHHHHHHH----HHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHH-hHHHHH--HHHHHhcCCChHHHH
Q 044850           32 EESLREGNVALFFS----GSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPD-GLGAAA--RFSNTLGAGKLKAAS  104 (250)
Q Consensus        32 ~~~l~~g~~~~l~~----~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~-gl~~a~--lvg~~~Gag~~~~a~  104 (250)
                      +..++.+.|.....    ....++.++++++.. +.+++.|+.+.++.+....... .++...  ..++.  ++|.++.+
T Consensus       207 k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~  283 (492)
T PRK10459        207 KPNLSFGAWQTAERIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLR  283 (492)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHH
Confidence            44555566665443    455667777776643 4578999999988776443333 344444  55654  67889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh-----HHHHHHH
Q 044850          105 VAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL----SA-----LRAYVDL  175 (250)
Q Consensus       105 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~----~g-----~~~~~~~  175 (250)
                      +..++.......+++...+.+...+++++.++-.++  -..+...+.+.++..++..+....    .+     ..+..+.
T Consensus       284 ~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~  361 (492)
T PRK10459        284 VGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNV  361 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHH
Confidence            999999999998988888888888888776654332  234556677766666555444332    22     4455555


Q ss_pred             HHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 044850          176 GTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIIT  219 (250)
Q Consensus       176 ~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~  219 (250)
                      ... ++.+|..+.+.  ..+|..|+.+++.+++.+...+..++.
T Consensus       362 ~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~  402 (492)
T PRK10459        362 FKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLM  402 (492)
T ss_pred             HHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443 34456554443  357999999999999988888777766

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.34  E-value=0.0001  Score=68.50  Aligned_cols=167  Identities=18%  Similarity=0.098  Sum_probs=116.8

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850           32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA  109 (250)
Q Consensus        32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~  109 (250)
                      +.++|..+..........+++++++++-. +..++-|+.+.++......+..+++...  ..++...+|+.++.++..+.
T Consensus       217 ~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~  295 (480)
T COG2244         217 RFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQ  295 (480)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            45566666666666677888888877743 4578899988999999999999999999  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh-----HHHHHHHHHHHH
Q 044850          110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKT----VLSA-----LRAYVDLGTYYV  180 (250)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~----~~~g-----~~~~~~~~~~~~  180 (250)
                      ........++...+.+..+++++..++-.++...  +...+.+.++..++..+..    .+++     ..+..+..+. +
T Consensus       296 ~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i  372 (480)
T COG2244         296 SLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-L  372 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-H
Confidence            9999999999999999999988887665443321  3444444444444433332    2333     3333333322 2


Q ss_pred             hhHHHHHHHHHHhCCCchhHHHHH
Q 044850          181 FGIPVAAALGFLFKLRGPAPWIGL  204 (250)
Q Consensus       181 i~ipl~~ll~~~~~~g~~G~w~a~  204 (250)
                      +.+.+.+++  .+.+|..|...++
T Consensus       373 ~~~~l~~~l--i~~~g~~g~~~a~  394 (480)
T COG2244         373 LNLILNLLL--IPRFGLIGAAIAT  394 (480)
T ss_pred             HHHHHHhHH--HHhhhhhhHHHHH
Confidence            223344443  3467888888887

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=97.44  E-value=0.071  Score=46.91  Aligned_cols=136  Identities=7%  Similarity=-0.014  Sum_probs=92.7

Q ss_pred             hHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHHHHHH
Q 044850           28 EEKKEESLREGNVALFFSGSEELLTLLSGFLPNP-KLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVA  106 (250)
Q Consensus        28 ~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~-~~avAa~~i~~~i~~~~~~~~~gl~~a~lvg~~~Gag~~~~a~~~  106 (250)
                      ..+.+...|.++.......+-.+.+.-+++-... ...+|+|+++..+.-++-.+...+-+..   -+++.++.+  ++.
T Consensus        11 ~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~ig---l~~V~s~rs--rr~   85 (345)
T PF07260_consen   11 WPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIG---LVFVNSKRS--RRK   85 (345)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHH---HHHhcchhh--hHH
Confidence            3444577888888888888888888888775422 2449999999999988887877776665   333333322  333


Q ss_pred             HHHHHHHHHHHHHHH-HHHHH-hchh-HhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044850          107 VKAVIFLANSESMIV-IATLL-NSRH-VFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA  168 (250)
Q Consensus       107 ~~~~~~~~~~~~i~~-~~~~~-~~~~-~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g  168 (250)
                      ...++..+.++...+ .++-+ .... .+-.+|..|+++.+.+...+.+..+..++++++.+.+|
T Consensus        86 ~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qG  150 (345)
T PF07260_consen   86 AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQG  150 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444443333333222 22222 1222 34557789999999999999999999999999999998

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=97.22  E-value=0.038  Score=52.68  Aligned_cols=192  Identities=10%  Similarity=0.027  Sum_probs=125.4

Q ss_pred             chhHHHHHHhHhHHHHHHHHHHHHHHHHHhhc--CCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH--HHHHHhcCCCh
Q 044850           26 LDEEKKEESLREGNVALFFSGSEELLTLLSGF--LPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKL  100 (250)
Q Consensus        26 ~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~--~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~--lvg~~~Gag~~  100 (250)
                      +|.+..........+.++.....+-..+++..  +.+ ..+.+.|++++|.-+++- .+..=+-.+.  +-++....++.
T Consensus       251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~  329 (549)
T PF04506_consen  251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS  329 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence            56777666666666777777666666666666  554 335678999999888762 2222255555  55665554433


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 044850          101 ---------KAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---  168 (250)
Q Consensus       101 ---------~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---  168 (250)
                               +++.+.....+++...+++++..+.....+.+..++..+.=.-..+...++.++.+.++.++|.+..+   
T Consensus       330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~  409 (549)
T PF04506_consen  330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF  409 (549)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence                     45666777777777777777776766777777777643221222236678888999999999888766   


Q ss_pred             ----------HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          169 ----------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       169 ----------~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                                ..-.....  -++.+..+|++..+ ++|..|.-+|-.+.+.++-+....+.+|
T Consensus       410 s~a~~~~l~~~~~~m~~~--S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~  469 (549)
T PF04506_consen  410 SVASESQLDRYNYWMVVF--SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR  469 (549)
T ss_pred             HhCCHHHHHHHHHHHHHH--HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11111111  12233455666554 7899999999999999998888776654

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=97.03  E-value=0.31  Score=46.09  Aligned_cols=173  Identities=14%  Similarity=0.035  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHh--HHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 044850           44 FSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDG--LGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESM  119 (250)
Q Consensus        44 ~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~g--l~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i  119 (250)
                      .-.++.=..+++..+|.+ ....|+.++.++=+++--+.-+  ++++-  .-.+...++..+++++...........+.+
T Consensus        24 Ri~G~vRd~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll  102 (518)
T COG0728          24 RILGFVRDVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLL  102 (518)
T ss_pred             HHHHHHHHHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHH
Confidence            344566667888899975 3578999999999998665554  44555  778888888788888888888877777888


Q ss_pred             HHHHHHHhchhHhH-hhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHhhH
Q 044850          120 IVIATLLNSRHVFF-YVLSN--TKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------------LRAYVDLGTYYVFGI  183 (250)
Q Consensus       120 ~~~~~~~~~~~~i~-~lf~~--~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g-------------~~~~~~~~~~~~i~i  183 (250)
                      ..+++..++.++++ .++..  |++....+....++..++.++.++..+..+             .|...|+..     +
T Consensus       103 ~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~-----I  177 (518)
T COG0728         103 LVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSV-----I  177 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHH-----H
Confidence            88888889999999 55554  344444778888888888888887766655             333444321     1


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          184 PVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       184 pl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      ...+.+..+......+..+|+.++-+....+.+..++|.
T Consensus       178 ~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~  216 (518)
T COG0728         178 GLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA  216 (518)
T ss_pred             HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            122222222111245667778888888888888887764

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=96.10  E-value=0.69  Score=38.69  Aligned_cols=163  Identities=17%  Similarity=0.158  Sum_probs=77.5

Q ss_pred             HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHh-HHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850           48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTI-PDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIAT  124 (250)
Q Consensus        48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~-~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~  124 (250)
                      +...-++...+|  +++.+-++...++..+...+ -.|++++.  .++++..+  .++.+++........+..+++....
T Consensus        20 ~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~   95 (273)
T PF01943_consen   20 FITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLI   95 (273)
T ss_pred             HHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455566  44677788888887776654 67788887  66665554  3444444444444444444433333


Q ss_pred             HHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhHHHHHHHHHHhCCCchh
Q 044850          125 LLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-----LRAYVDLGTYYVFGIPVAAALGFLFKLRGPA  199 (250)
Q Consensus       125 ~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g-----~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G  199 (250)
                      .....     .+.+++..........................++     .....++..... .+....++ ...+.+..+
T Consensus        96 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~  168 (273)
T PF01943_consen   96 LLIAS-----FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL-SLLLILLL-LFLGSSLWG  168 (273)
T ss_pred             HHHHH-----HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHhhhHHH
Confidence            32222     3333332222211111111111111222233333     222333332221 12122222 222334777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 044850          200 PWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       200 ~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      ..++..++..+..++...+.+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~  190 (273)
T PF01943_consen  169 FLLGLVISSLVSLIISLFYLRR  190 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887777766654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=96.01  E-value=1.3  Score=41.18  Aligned_cols=151  Identities=16%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHHHHHH-hHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 044850           51 LTLLSGFLPNPKLETSAPSVCLATVYTLNT-IPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSR  129 (250)
Q Consensus        51 ~~~~~~~~G~~~~avAa~~i~~~i~~~~~~-~~~gl~~a~lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~  129 (250)
                      ...+...+|  +.+...++.+..+..+... .-.|++++. +-+    ++.  .++.......+....+++..++.+.+.
T Consensus        29 ~~ilaR~L~--p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai-i~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (492)
T PRK10459         29 LTVLARILD--NHQFGLLTMSLVIIGFADTLSDMGIGASI-IQR----QDI--SHLQLSTLYWLNVGLGIVVFVLVFLLS   99 (492)
T ss_pred             HHHHHHhCC--HHHccHHHHHHHHHHHHHHHHHcCHHHHH-Hhc----ccC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455567  3456667777777666543 334566654 221    111  122333444555666666666777777


Q ss_pred             hHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhH
Q 044850          130 HVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAP  200 (250)
Q Consensus       130 ~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~  200 (250)
                      +.+..+|.+ ++..    ..+++.++..++.++.....+         .....+...... ...+...+. ..+.|..+.
T Consensus       100 ~~i~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~-~~~~~i~~~-~~~~g~~~l  172 (492)
T PRK10459        100 PLIADFYHN-PELA----PLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVA-GFTFAVVSA-FFWPGALAA  172 (492)
T ss_pred             HHHHHHcCC-hhhH----HHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHH-HHCCcHHHH
Confidence            777776654 4432    234444444444443332222         222333333221 222222222 346788888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 044850          201 WIGLQAGAFLQTILLFI  217 (250)
Q Consensus       201 w~a~~~~~~~~~i~~~~  217 (250)
                      .++..++..+..++...
T Consensus       173 ~~~~~~~~~~~~l~~~~  189 (492)
T PRK10459        173 ILGYLVNSSVRTLLFGY  189 (492)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888887776655433

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.89  E-value=0.51  Score=43.61  Aligned_cols=203  Identities=10%  Similarity=-0.037  Sum_probs=114.0

Q ss_pred             hcccCCcceeeecccc-----chhHHHHHHhHhHHHHHHHHHHHHHHHHHhh---cCCCchhhhhHHHHHHHHHHHHHH-
Q 044850           10 EVGDDDGTLLLEEKDT-----LDEEKKEESLREGNVALFFSGSEELLTLLSG---FLPNPKLETSAPSVCLATVYTLNT-   80 (250)
Q Consensus        10 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~---~~G~~~~avAa~~i~~~i~~~~~~-   80 (250)
                      +...+..+++....+.     +|.+..+.....--+.++......-.-.+++   -...++  -+.|.+.+|+-+++-= 
T Consensus       216 ~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~--QgvYd~v~n~GSLlaR~  293 (530)
T KOG2864|consen  216 EPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGD--QGVYDLVSNYGSLLARL  293 (530)
T ss_pred             cchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcch--hhHHHHHHhhhhHHHHH
Confidence            3444444444444443     5666655555555555555544332222322   122123  3457777776665522 


Q ss_pred             hHHhHHHHH--HHHHHhcCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHH
Q 044850           81 IPDGLGAAA--RFSNTLGAGKLKAASV---AVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCL  155 (250)
Q Consensus        81 ~~~gl~~a~--lvg~~~Gag~~~~a~~---~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~  155 (250)
                      +.-=+-...  .-+|-.-.++.|+.|+   .....++....+++++..+....+..+..++..+.=.-.-+...+++++.
T Consensus       294 iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~Ycl  373 (530)
T KOG2864|consen  294 IFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCL  373 (530)
T ss_pred             HhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHH
Confidence            222344444  5555555555555544   45666667777777766666667777777776433222334567899999


Q ss_pred             HHHHHHHHHHhhh---------------HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 044850          156 SVVLDSLKTVLSA---------------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITN  220 (250)
Q Consensus       156 ~~~~~~i~~~~~g---------------~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~  220 (250)
                      +.++.+++.+..|               .-+.+..+    +.+.++|++.-  .+|..|.-.|-.+.+.++-.....+++
T Consensus       374 YI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSv----iflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~  447 (530)
T KOG2864|consen  374 YIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSV----IFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIR  447 (530)
T ss_pred             HHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHH----HHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888776               22222222    23446677755  456777777777766666555544443

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=95.22  E-value=1.5  Score=36.35  Aligned_cols=156  Identities=15%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHh-HHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850           48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTI-PDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLL  126 (250)
Q Consensus        48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~-~~gl~~a~lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~  126 (250)
                      +....++...+|  ..+.+.++....+..+...+ ..|+.+.. +-  ..+++.++.++..+......++.++....+..
T Consensus         5 f~~~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (251)
T PF13440_consen    5 FLFLILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSL-VR--SAARDKQDIRSLLRFSLLVSLLLAVILAILAI   79 (251)
T ss_pred             HHHHHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555666  44678888888888777665 45555554 22  34466777888877777766666555544322


Q ss_pred             hchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHhhh-----HHHHHHHHHHHHhhHHHHHHHHHHhCCCc
Q 044850          127 NSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSL----KTVLSA-----LRAYVDLGTYYVFGIPVAAALGFLFKLRG  197 (250)
Q Consensus       127 ~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i----~~~~~g-----~~~~~~~~~~~~i~ipl~~ll~~~~~~g~  197 (250)
                      ....    .+ .+++...    ++....+..+..+.    +..+.+     .....+....... +....++ ...+.+.
T Consensus        80 ~~~~----~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~  148 (251)
T PF13440_consen   80 LIAY----FF-GDPELFW----LLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLR-LLLLVLL-LYLGLNL  148 (251)
T ss_pred             HHHH----Hh-CChhHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHHHHHH-HHHHhhH
Confidence            2222    33 3444322    22233323333333    333333     2233333322111 1111111 2233477


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 044850          198 PAPWIGLQAGAFLQTILLFIIT  219 (250)
Q Consensus       198 ~G~w~a~~~~~~~~~i~~~~~~  219 (250)
                      .+..++..++..+..++.....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~  170 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLL  170 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            7888888888877776655533

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=92.62  E-value=1  Score=34.43  Aligned_cols=41  Identities=12%  Similarity=0.071  Sum_probs=33.1

Q ss_pred             HHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850          179 YVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR  221 (250)
Q Consensus       179 ~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~  221 (250)
                      .++.+++.+++  .+++|..|+.+++.+++.....+..++.+|
T Consensus        39 ~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen   39 AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677666  457899999999999999999888887776

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=90.02  E-value=16  Score=33.76  Aligned_cols=80  Identities=16%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhH-HhHHHHH--HHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHHHH
Q 044850           48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIP-DGLGAAA--RFSNTLGAGKLKAASVA-VKAVIFLANSESMIVIA  123 (250)
Q Consensus        48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~-~gl~~a~--lvg~~~Gag~~~~a~~~-~~~~~~~~~~~~i~~~~  123 (250)
                      +.....+...+|.  .+.+.++.+..+..+...+. .|+..+.  .++++...++....+.. ...+.......+++...
T Consensus        27 ~i~~~~lar~lg~--~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  104 (480)
T COG2244          27 LITIPLLARLLGP--EGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLL  104 (480)
T ss_pred             HHHHHHHHHHhCc--ccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555666773  35677888888888877766 7888888  89999998888888887 66666666666666555


Q ss_pred             HHHhch
Q 044850          124 TLLNSR  129 (250)
Q Consensus       124 ~~~~~~  129 (250)
                      ..+...
T Consensus       105 ~~~~~~  110 (480)
T COG2244         105 IAYLLA  110 (480)
T ss_pred             HHHHhc
Confidence            544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	8e-15

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 26/213 (12%)

Query: 40  VALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGA 97
           V LF      ++ LL   L +  +  +A  V L     +   P  +GAA   R  + LG 
Sbjct: 255 VTLF-----AVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 307

Query: 98  GKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSV 157
              K A++A    +    + + I     +  R     + +  + VV     +     +  
Sbjct: 308 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQ 367

Query: 158 VLDSLKTVLS-ALRAYVD--------LGTYYVFGIPVAAALGFL-----FKLRGPAPWIG 203
            +D+++ V + +LR Y D          +Y+V G+P    LG         L     W+G
Sbjct: 368 CMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLG 427

Query: 204 LQAGAFLQTILLFIITNRTNWEKQARERILEER 236
              G     ++L     R  W ++  + +    
Sbjct: 428 FIIGLSAAALMLGQ---RLYWLQKQSDDVQLHL 457

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.85
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.61

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.85  E-value=2.1e-20  Score=169.80  Aligned_cols=192  Identities=18%  Similarity=0.202  Sum_probs=172.7

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHH
Q 044850           29 EKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA  106 (250)
Q Consensus        29 ~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~  106 (250)
                      +..+.+.|..+....+...+.+.+.+++++|  +.++|+|+++.++.++.+++..|++++.  .+|+++|+||.+|+++.
T Consensus       239 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~  316 (460)
T 3mkt_A          239 RLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIA  316 (460)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            3345677777777778888888999999998  4589999999999999999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850          107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT  177 (250)
Q Consensus       107 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~  177 (250)
                      .+.+...+..+++..++.++++++++..+|++|+++.+.+..++++.+++.++++++.+..+         .++..++.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  396 (460)
T 3mkt_A          317 ANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFIS  396 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998876554         778999999


Q ss_pred             HHHhhHHHHHHHHHH----hC-CCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          178 YYVFGIPVAAALGFL----FK-LRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       178 ~~~i~ipl~~ll~~~----~~-~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      .|++.+|+.+++...    ++ +|..|+|+++.+++++.+++..++++|.
T Consensus       397 ~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          397 YWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876    56 9999999999999999998887766654

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.61  E-value=1.6e-14  Score=130.94  Aligned_cols=188  Identities=14%  Similarity=0.096  Sum_probs=154.7

Q ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850           31 KEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVK  108 (250)
Q Consensus        31 ~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~  108 (250)
                      .+..+|..+....+.....+.+.+++++|  +.++++++++.++..+...+..|++.+.  .++|++|+||.+++++..+
T Consensus        15 ~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~   92 (460)
T 3mkt_A           15 IKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVH   92 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence            34555666666666666777888899998  5579999999999998889999999998  9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHH
Q 044850          109 AVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYY  179 (250)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~  179 (250)
                      .++.+....+++.+++ +.+.+++..+++.|+++.+.+..|+++..++.++.++....++         .++..+.... 
T Consensus        93 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-  170 (460)
T 3mkt_A           93 QGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGL-  170 (460)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-
Confidence            9999999999987765 6788889999999999999999999999999888888776655         4555555443 


Q ss_pred             HhhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850          180 VFGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITNRT  222 (250)
Q Consensus       180 ~i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~  222 (250)
                      ++.+++.+++.+.    +++|+.|+.+++.+++++..++..++++|.
T Consensus       171 ~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          171 LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3556677777653    268999999999999999998887777653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00