Citrus Sinensis ID: 044854


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MGFSLSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTVRVNSFKKTDGSSNDHYHDDDETIKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK
ccccccccHHHHHHHHHHHccEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccEEEEEcccccccccccccHHHHHHHHcccccccccccEEEEEEccEEEEcccccEEEcccccEEEEEEcccccEEEEcccccccccccccccccEEEEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHccccccccc
cccccccccccHHHHHHcccEEEEEEEEEccccccEEEEEEccccccccccccccccccccccEEcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHHHccHHHHHHEEEEEEccEEEEEEccEEEEcccccEEEEEEEcccEEEEEEcccccEEcccHccccHEEEcEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHccccHHccc
MGFSLSLLLSAWEEILKHRIFSLAynisfdtkdgEVTVRVNSfkktdgssndhyhdddetikstkrtrslknykpenvkllennfsfknyvavednnkeimmgsntlkhvpmpslslpepaimfsprpvCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKrssvsffniekpeTAVSRWARARTRAAKvgkglskdDKAQKLALQHWLEAidprhryghnlhMYYDiwfdsestqpffywldvgdgkevnlekcpravLQRQCitylgpqerQVFEVVVENGKLlyrqsgipvettegsKWIFVLSTTRalyvgpkkkgsfqhssflsggattAAGRLVAHNGileaiwpysghyhpteeNFREFISFLEENhvdltnvk
MGFSLSLLLSAWEEILKHRIFSLAynisfdtkdgEVTVRVNSfkktdgssndhyhdddetikstkrtrslknykpenvkllennfsfKNYVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKrssvsffniekpetavsrWARARTRAakvgkglskddkAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLyrqsgipvettegskwiFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK
MGFSLSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTVRVNSFKKTDGSSNDHYHDDDETIKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK
****LSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTVRV*************************************VKLLENNFSFKNYVAVEDNN**I********************AIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETAVSRWARART***************QKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHV******
*GFSLSLLLSAWEEILKHRIFSLAYNISFDT*D*E******************************************************************************************************KLQKVYKSYRTRRNLADCAVVVEELWWKALDFAA***********************************************HWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVD*****
MGFSLSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTVRVNSFKKTDGSSNDHYHDDDETIKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETAVSRWARA***********SKDDKAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK
***SLSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTVRVNSFK******************STKRTRSLKNYKP*****************************************************VCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGFSLSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTVRVNSFKKTDGSSNDHYHDDDETIKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
225444875 535 PREDICTED: uncharacterized protein LOC10 0.974 0.715 0.727 1e-166
356561925 530 PREDICTED: uncharacterized protein LOC10 0.969 0.718 0.710 1e-160
255546139 541 calmodulin binding protein, putative [Ri 0.982 0.713 0.748 1e-159
147859065 544 hypothetical protein VITISV_024541 [Viti 0.865 0.625 0.701 1e-154
297743040 966 unnamed protein product [Vitis vinifera] 0.987 0.401 0.679 1e-152
147846155 958 hypothetical protein VITISV_000215 [Viti 0.987 0.405 0.689 1e-152
225442208 554 PREDICTED: uncharacterized protein LOC10 0.987 0.700 0.679 1e-152
449452739 535 PREDICTED: uncharacterized protein LOC10 0.964 0.708 0.695 1e-149
224142786 531 predicted protein [Populus trichocarpa] 0.974 0.721 0.661 1e-149
357449901 508 Calmodulin-binding protein [Medicago tru 0.921 0.712 0.689 1e-148
>gi|225444875|ref|XP_002279373.1| PREDICTED: uncharacterized protein LOC100256072 [Vitis vinifera] gi|297738645|emb|CBI27890.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/404 (72%), Positives = 335/404 (82%), Gaps = 21/404 (5%)

Query: 1   MGFSLSLLLSAWEEILKHRIFSLAYNISFDTKDGEVTV-RVNSFKKTDGSSNDHYHDDDE 59
           MG SLSLL SAWEEI+KHR FSL  NI+F +KDGE+T+ + +SFKKTD           E
Sbjct: 1   MGLSLSLLNSAWEEIVKHRFFSLRDNINFTSKDGEMTILKSDSFKKTDS----------E 50

Query: 60  TIKS-TKRTRSLKNYKPENV------KLLENNFSFKNYVAVEDN--NKEIMMGSNTLKHV 110
           TI + T  +R+LKN +PE V       +LE + SF + V  + N  +  +    N LK  
Sbjct: 51  TITTRTDNSRNLKNSRPEKVILERTLSMLERSLSFTSLVEDKQNLGSNNLDGKQNRLKSN 110

Query: 111 PMPSLSLPEP-AIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDF 169
            +P++SLPEP AI F PRPV +L+AAA+K+QK YKSYRTRRNLADCAVV+EELWWKALDF
Sbjct: 111 LIPTISLPEPPAIFFFPRPVSDLDAAAIKIQKFYKSYRTRRNLADCAVVIEELWWKALDF 170

Query: 170 AALKRSSVSFFNIEKPETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHR 229
           AAL+RSSVSFFN EKPETAVS+WARARTRAAKVGKGLSKD+KAQKLALQHWLEAIDPRHR
Sbjct: 171 AALRRSSVSFFNEEKPETAVSKWARARTRAAKVGKGLSKDEKAQKLALQHWLEAIDPRHR 230

Query: 230 YGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQVFE 289
           YGHNLH+YYDIWF S S+QPFFYWLDVGDGKE  LEKCPR VLQRQCI YLGP+ER+ +E
Sbjct: 231 YGHNLHLYYDIWFKSSSSQPFFYWLDVGDGKETYLEKCPRPVLQRQCIKYLGPKEREAYE 290

Query: 290 VVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAAG 349
           V+VENGKL++RQS + VETTEGSKWIFVLST RALYVG KKKG FQHSSFLSGGATTAAG
Sbjct: 291 VIVENGKLVFRQSRMLVETTEGSKWIFVLSTLRALYVGKKKKGEFQHSSFLSGGATTAAG 350

Query: 350 RLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK 393
           RLVAHNGI+EAIWPYSGHYHPTEENFREF+SFLEE++VDLTNVK
Sbjct: 351 RLVAHNGIIEAIWPYSGHYHPTEENFREFVSFLEEHNVDLTNVK 394




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561925|ref|XP_003549227.1| PREDICTED: uncharacterized protein LOC100776993 [Glycine max] Back     alignment and taxonomy information
>gi|255546139|ref|XP_002514129.1| calmodulin binding protein, putative [Ricinus communis] gi|223546585|gb|EEF48083.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147859065|emb|CAN80416.1| hypothetical protein VITISV_024541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743040|emb|CBI35907.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846155|emb|CAN81630.1| hypothetical protein VITISV_000215 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442208|ref|XP_002274686.1| PREDICTED: uncharacterized protein LOC100263563 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452739|ref|XP_004144116.1| PREDICTED: uncharacterized protein LOC101207749 [Cucumis sativus] gi|449489955|ref|XP_004158468.1| PREDICTED: uncharacterized LOC101207749 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142786|ref|XP_002324731.1| predicted protein [Populus trichocarpa] gi|222866165|gb|EEF03296.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357449901|ref|XP_003595227.1| Calmodulin-binding protein [Medicago truncatula] gi|355484275|gb|AES65478.1| Calmodulin-binding protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
TAIR|locus:2057765 532 AT2G26190 "AT2G26190" [Arabido 0.977 0.721 0.635 1.1e-124
TAIR|locus:2123817 526 EDA39 "AT4G33050" [Arabidopsis 0.445 0.332 0.75 1.9e-123
TAIR|locus:2164655 495 AT5G57010 "AT5G57010" [Arabido 0.877 0.696 0.654 3.6e-121
TAIR|locus:2086819 605 AT3G13600 "AT3G13600" [Arabido 0.849 0.552 0.601 3.5e-107
TAIR|locus:2076421 575 AT3G58480 "AT3G58480" [Arabido 0.659 0.450 0.713 2.5e-104
TAIR|locus:2085161 456 AT3G52870 "AT3G52870" [Arabido 0.659 0.567 0.599 1.3e-86
TAIR|locus:2057765 AT2G26190 "AT2G26190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 258/406 (63%), Positives = 298/406 (73%)

Query:     1 MGFSLSLLLSAWEEILKHRIFSLAYNI-SF-DT-------KDGEVTVRVNSFKKTDGSSN 51
             MG SLSLLLSAW+E++  + FS    + SF +T       K+G +T R NSFK    S N
Sbjct:     1 MGLSLSLLLSAWKEVVTTQFFSFKNPVESFLETRSFSLKLKEGGLTSRTNSFK----SEN 56

Query:    52 DHYHDDDETIKSTKRTRSLKNYKPENVKLLENN-FSFKNYVAVEDNN--KEIMMGSNTLK 108
                    E    T   RSL     E V  +E    + ++   VE     +  + G N  +
Sbjct:    57 PQ-----EKSPKTGMERSLSFNSWEIVTEVETEPMNKEDEEIVEPTKPARNSLNGRNCER 111

Query:   109 -HVPMPSLSLPEPAIMFSPRPVCELNAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKAL 167
               +  P+++ P P + FSPRPV EL+AAA  LQKVYKSYRTRRNLADCAVVVEELWWK L
Sbjct:   112 IQITKPTITPPTPFVFFSPRPVTELDAAATTLQKVYKSYRTRRNLADCAVVVEELWWKTL 171

Query:   168 DFAALKRSSVSFFNIEKPETAVSRWARARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPR 227
             D AAL  SSV+FF  EK ETAVS+WARARTRAAKVGKGLSKD+KAQKLALQHWLEAIDPR
Sbjct:   172 DAAALNLSSVAFFEEEKHETAVSKWARARTRAAKVGKGLSKDEKAQKLALQHWLEAIDPR 231

Query:   228 HRYGHNLHMYYDIWFDSESTQPFFYWLDVGDGKEVNLEKCPRAVLQRQCITYLGPQERQV 287
             HRYGHNLH YYD+W  S S QPFFYWLD+GDGK+VNLE  PR+VLQ+QCI YLGP ER+ 
Sbjct:   232 HRYGHNLHFYYDVWSASMSAQPFFYWLDIGDGKDVNLEHHPRSVLQKQCIKYLGPLEREA 291

Query:   288 FEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTA 347
             +EV+VE+GKL+ +QS   + +TE SK IFVLSTTR LYVG KKKG FQHSSFLSGGATTA
Sbjct:   292 YEVIVEDGKLMNKQSMTLINSTEDSKSIFVLSTTRTLYVGQKKKGRFQHSSFLSGGATTA 351

Query:   348 AGRLVAHNGILEAIWPYSGHYHPTEENFREFISFLEENHVDLTNVK 393
             AGRLVA  GILEAIWPYSGHY PTE+NF EFISFLEEN+VD+TNVK
Sbjct:   352 AGRLVAREGILEAIWPYSGHYLPTEDNFNEFISFLEENNVDMTNVK 397




GO:0005516 "calmodulin binding" evidence=ISS
TAIR|locus:2123817 EDA39 "AT4G33050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164655 AT5G57010 "AT5G57010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086819 AT3G13600 "AT3G13600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076421 AT3G58480 "AT3G58480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085161 AT3G52870 "AT3G52870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 95.53
smart0001526 IQ Short calmodulin-binding motif containing conse 94.72
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
Probab=95.53  E-value=0.0087  Score=37.30  Aligned_cols=20  Identities=25%  Similarity=0.522  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhhhhhhhhhcc
Q 044854          133 NAAAVKLQKVYKSYRTRRNL  152 (393)
Q Consensus       133 ~~AA~~iQk~Yr~yRtRR~l  152 (393)
                      ..||++||+.||+|..|+++
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            37999999999999999874



The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.96
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.88
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 92.01
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 91.48
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 83.17
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 82.79
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
Probab=95.96  E-value=0.0041  Score=41.21  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHhhhhhhhhhcc
Q 044854          131 ELNAAAVKLQKVYKSYRTRRNL  152 (393)
Q Consensus       131 ~~~~AA~~iQk~Yr~yRtRR~l  152 (393)
                      +.+.||+.||+.||+|..||.+
T Consensus         4 ~Ee~aA~vIQrA~R~yl~~~~~   25 (27)
T 2kxw_B            4 QEEVSAIVIQRAYRRYLLKQKV   25 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5678999999999999999875



>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00