Citrus Sinensis ID: 044863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MPKNKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSKQS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccEEEEEEccccEEEEEEEcHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mpknkivkdeairsrapkghFVVYVGTEMkrfvvptsylknpiFQQLLDKAAEEygfhnkqnkiilpcdesTFQRLSIILSKQS
Flexible Loop (DISEMBL)
mpknkivkdeairsrapkghfVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNkqnkiilpcdesTFQRLSIILSKQS
Low Complexity Region (SEG)
MPKNKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSKQS
Disordered region (IsUnstruct)
*****************KGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIIL****
Disordered Region (DISOPRED)
******************GHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILS***
Disordered Region (DISEMBL)
MPKNKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSKQS
Disordered Region (DISPRO)
***********IRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIIL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPKNKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSKQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.809	0.739	0.485	7e-15
P33082	82	Auxin-induced protein X15	no	no	0.785	0.804	0.484	1e-14
P33083	90	Auxin-induced protein 6B	no	no	0.761	0.711	0.468	1e-13
P33081	82	Auxin-induced protein 15A	no	no	0.809	0.829	0.455	2e-13
P33080	92	Auxin-induced protein X10	no	no	0.678	0.619	0.491	3e-12
P33079	93	Auxin-induced protein 10A	no	no	0.833	0.752	0.414	1e-11

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%)

Query: 16 APKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQR 75
          APKG+  VYVG  MKRFV+P S+L  P+FQ LL +A EE+G+ +    + +PC E  FQ 
Sbjct: 25 APKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQH 84

Query: 76 LSIILSKQ 83
          ++  LS Q
Sbjct: 85 ITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 16 APKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQR 75
          APKG+  VYVG +MKRFV+P SY+  P FQ LL +A EE+G+ +    + +PC E  FQR
Sbjct: 17 APKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQR 76

Query: 76 LSIILS 81
          ++  L+
Sbjct: 77 ITCCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 18 KGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLS 77
          KG+  VYVG +M+RFV+P SYL  P FQ LL +A EE+G+H+    + +PC E  FQ ++
Sbjct: 27 KGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHIT 86

Query: 78 IILS 81
            L+
Sbjct: 87 SFLN 90

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 14 SRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTF 73
          + APKG+  VYVG ++KRFV+P SYL  P FQ LL +A EE+G+ +    + +PC E  F
Sbjct: 15 ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVF 74

Query: 74 QRLSIILS 81
          Q ++  L+
Sbjct: 75 QCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 17 PKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTF 73
          PKG+ VVYVG +M+RF++P SYL  P FQ LL++A EE+G+ +    + +PC E  F
Sbjct: 26 PKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF 82

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%)

Query: 13 RSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDEST 72
          R   PKG+  VYVG +M+RF +P SYL  P FQ+LL +A EE+G+ +    + +PC E  
Sbjct: 23 RVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 82

Query: 73 FQRLSIILSK 82
          F  ++  L++
Sbjct: 83 FLNVTAHLNE 92

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
224135575	81	SAUR family protein [Populus trichocarpa	0.833	0.864	0.816	2e-26
359493164	81	PREDICTED: auxin-induced protein X15-lik	0.964	1.0	0.678	2e-25
359480917	80	PREDICTED: auxin-induced protein X15-lik	0.904	0.95	0.662	7e-23
224146373	177	SAUR family protein [Populus trichocarpa	0.75	0.355	0.75	3e-21
15233907	103	SAUR-like auxin-responsive protein [Arab	0.833	0.679	0.561	2e-16
297813377	98	hypothetical protein ARALYDRAFT_489807 [	0.785	0.673	0.579	2e-15
224080550	89	SAUR family protein [Populus trichocarpa	0.869	0.820	0.520	1e-14
449525547	113	PREDICTED: auxin-induced protein 10A5-li	0.928	0.690	0.518	1e-14
449454173	113	PREDICTED: auxin-induced protein X10A-li	0.869	0.646	0.539	2e-14
224097550	89	SAUR family protein [Populus trichocarpa	0.869	0.820	0.506	2e-14

>gi|224135575|ref|XP_002327252.1| SAUR family protein [Populus trichocarpa] gi|222835622|gb|EEE74057.1| SAUR family protein [Populus trichocarpa]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 13 RSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDEST 72
          RSRAPKGHFVVYVG EMKRFVVPTSYLK+PIFQQLLDKAAEE+GF N QN I+LPCDEST
Sbjct: 10 RSRAPKGHFVVYVGNEMKRFVVPTSYLKSPIFQQLLDKAAEEFGFDN-QNGIVLPCDEST 68

Query: 73 FQRLSIILSKQ 83
          F RL+  L+K 
Sbjct: 69 FNRLTAFLAKH 79

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493164|ref|XP_003634529.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 71/84 (84%), Gaps = 3/84 (3%)

Query: 1  MPKNKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNK 60
          MPK K+  D++ R RAPKGHFVVYVG+ M RFVVPTSYLKNP+FQQLL+KAA+EYG+ + 
Sbjct: 1  MPK-KVELDQS-RRRAPKGHFVVYVGSRMTRFVVPTSYLKNPVFQQLLEKAADEYGY-DS 57

Query: 61 QNKIILPCDESTFQRLSIILSKQS 84
           N+I+LPCDESTFQRL+  L+K +
Sbjct: 58 HNRIVLPCDESTFQRLTTFLAKHT 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480917|ref|XP_003632542.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  110 bits (276), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 8  KDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILP 67
          +D   R RAPKGHFVVYVG EMKRFVVP SYLKNP+ QQLL +AAEE+GF + Q +I+LP
Sbjct: 5  QDSETRRRAPKGHFVVYVGEEMKRFVVPISYLKNPMLQQLLAEAAEEFGF-DSQKRIVLP 63

Query: 68 CDESTFQRLSIILSKQS 84
          CDESTFQR++  + K +
Sbjct: 64 CDESTFQRITDFMIKST 80

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146373|ref|XP_002325984.1| SAUR family protein [Populus trichocarpa] gi|222862859|gb|EEF00366.1| SAUR family protein [Populus trichocarpa]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 20  HFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSII 79
           HFVVYVG+EMKRFVVPTSYLKNP+F QLLDK+AEEYGF N+ N I+LPCDESTF+ L+  
Sbjct: 115 HFVVYVGSEMKRFVVPTSYLKNPVFLQLLDKSAEEYGFDNR-NGIVLPCDESTFKSLTAF 173

Query: 80  LSKQ 83
           L+K 
Sbjct: 174 LAKH 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233907|ref|NP_192691.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|7267648|emb|CAB78076.1| putative protein [Arabidopsis thaliana] gi|332657362|gb|AEE82762.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 58/73 (79%), Gaps = 3/73 (4%)

Query: 14 SRAPKGHFVVYVGTE--MKRFVVPTSYLKNPIFQQLLDKAAEEYGF-HNKQNKIILPCDE 70
          SR P+GHFVVYVGT+  ++RFV+PT++LK+P FQ+LLD AAEE+G+    ++KI+LPCD 
Sbjct: 26 SRTPRGHFVVYVGTKKKLERFVIPTTFLKSPSFQKLLDNAAEEFGYAEAHRDKIVLPCDV 85

Query: 71 STFQRLSIILSKQ 83
          STF+ L + L+  
Sbjct: 86 STFRSLVMFLTSH 98

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813377|ref|XP_002874572.1| hypothetical protein ARALYDRAFT_489807 [Arabidopsis lyrata subsp. lyrata] gi|297320409|gb|EFH50831.1| hypothetical protein ARALYDRAFT_489807 [Arabidopsis lyrata subsp. lyrata]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 3/69 (4%)

Query: 16 APKGHFVVYVGT--EMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNK-QNKIILPCDEST 72
           P+GHFVVYVGT  +++RFV+PT +LK+P FQ+LLD AAEE+G+    QNKI+LPCD S+
Sbjct: 29 TPRGHFVVYVGTNKKLERFVIPTKFLKSPSFQKLLDNAAEEFGYAEAYQNKIVLPCDVSS 88

Query: 73 FQRLSIILS 81
          F+ L + L+
Sbjct: 89 FRSLVMFLT 97

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080550|ref|XP_002306159.1| SAUR family protein [Populus trichocarpa] gi|222849123|gb|EEE86670.1| SAUR family protein [Populus trichocarpa]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 47/73 (64%)

Query: 5  KIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKI 64
          +I+      S  PKGHFVVYVG  +KRFVVP SYLKNP FQ+LL    EEYGF++    +
Sbjct: 14 RILLSPETSSIVPKGHFVVYVGETLKRFVVPISYLKNPSFQKLLSHVEEEYGFNHPMGGL 73

Query: 65 ILPCDESTFQRLS 77
           +PC E  F  L+
Sbjct: 74 TIPCSEEVFTSLT 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525547|ref|XP_004169778.1| PREDICTED: auxin-induced protein 10A5-like [Cucumis sativus]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 5   KIVKDEAIRSRAPKGHFVVYVGTE---MKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQ 61
           ++ K  +  S  PKGHFVVYVG E    KRFVVP SYLKNP+FQ+LL KAA+E+GF N  
Sbjct: 30  EVTKHRSSFSDVPKGHFVVYVGEEEEDRKRFVVPLSYLKNPLFQELLSKAADEFGFDNHF 89

Query: 62  NKIILPCDESTFQRLSIILSK 82
             I +PC +  F  L+  L++
Sbjct: 90  GGITIPCAQDQFLGLTSRLNR 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454173|ref|XP_004144830.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 5   KIVKDEAIRSRAPKGHFVVYVGTE---MKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQ 61
           ++ K  +  S  PKGHFVVYVG E    KRFVVP SYLKNP+FQ+LL KAA+E+GF N  
Sbjct: 30  EVTKHRSSFSDVPKGHFVVYVGEEEEDRKRFVVPLSYLKNPLFQELLSKAADEFGFDNHF 89

Query: 62  NKIILPCDESTFQRLS 77
             I +PC +  F  L+
Sbjct: 90  GGITIPCAQDQFLGLT 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097550|ref|XP_002334603.1| SAUR family protein [Populus trichocarpa] gi|222873489|gb|EEF10620.1| SAUR family protein [Populus trichocarpa]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 5  KIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKI 64
          +I+      S  PKGHFVVYVG  +KRFVVP S+LKNP FQ+LL    EEYGF++    +
Sbjct: 14 RILLSPETSSVVPKGHFVVYVGETLKRFVVPISFLKNPSFQKLLSHVEEEYGFNHPMGGL 73

Query: 65 ILPCDESTFQRLS 77
           +PC E  F  L+
Sbjct: 74 TIPCSEEVFTSLT 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2133757	103	AT4G09530 "AT4G09530" [Arabido	0.809	0.660	0.591	9.5e-18
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.726	0.648	0.562	7.9e-14
TAIR|locus:2057971	124	AT2G37030 "AT2G37030" [Arabido	0.75	0.508	0.531	1.3e-13
TAIR|locus:2116875	108	AT4G34790 "AT4G34790" [Arabido	0.773	0.601	0.507	2.1e-13
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.702	0.595	0.533	7.1e-13
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.809	0.653	0.485	9.1e-13
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.75	0.588	0.484	1.2e-12
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.940	0.759	0.375	1.2e-12
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.809	0.693	0.5	1.5e-12
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.702	0.310	0.483	1.5e-12

TAIR|locus:2133757 AT4G09530 "AT4G09530" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 42/71 (59%), Positives = 57/71 (80%)

Query:    14 SRAPKGHFVVYVGTEMK--RFVVPTSYLKNPIFQQLLDKAAEEYGFHNK-QNKIILPCDE 70
             SR P+GHFVVYVGT+ K  RFV+PT++LK+P FQ+LLD AAEE+G+    ++KI+LPCD 
Sbjct:    26 SRTPRGHFVVYVGTKKKLERFVIPTTFLKSPSFQKLLDNAAEEFGYAEAHRDKIVLPCDV 85

Query:    71 STFQRLSIILS 81
             STF+ L + L+
Sbjct:    86 STFRSLVMFLT 96

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 36/64 (56%), Positives = 44/64 (68%)

Query:    13 RSRAPKGHFVVYVGTEM---KRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCD 69
             +SR PKGH  VYVG EM   KRFVVP SYL +P FQ LL +A EE+GF++    + +PC 
Sbjct:    18 QSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLTIPCR 77

Query:    70 ESTF 73
             E TF
Sbjct:    78 EETF 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2057971 AT2G37030 "AT2G37030" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/64 (53%), Positives = 46/64 (71%)

Query:    10 EAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCD 69
             E I    PKGH VVYVG E KRFV+  + LK+P+FQ LLD+A + YGF +  +++ +PC+
Sbjct:    43 EVIPRDVPKGHLVVYVGEEYKRFVININLLKHPLFQALLDQAQDAYGF-SADSRLWIPCN 101

Query:    70 ESTF 73
             ESTF
Sbjct:   102 ESTF 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116875 AT4G34790 "AT4G34790" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 35/69 (50%), Positives = 47/69 (68%)

Query:    17 PKGHFVVYVGTEM--KRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQ 74
             PKGH  VYVG +M  KRFVVP SYL +P+F++ L++A EE GFH+    + +PC E +F 
Sbjct:    40 PKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF- 98

Query:    75 RLSIILSKQ 83
              L +I S Q
Sbjct:    99 -LYLITSHQ 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query:    17 PKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRL 76
             PKGHFVVYVG    R V+P S+L +PIFQ LL ++ EE+GF  + N + +PCDE  F+ L
Sbjct:    35 PKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFF-QDNGLTIPCDEHFFRAL 93

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 34/70 (48%), Positives = 44/70 (62%)

Query:    14 SRAPKGHFVVYVGT--EMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDES 71
             +  PKGH  VYVG     KRFV+P SYL +P+FQ LL+ A EE+GF +    + +PC E 
Sbjct:    33 NNVPKGHVAVYVGETYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTED 92

Query:    72 TFQRLSIILS 81
              F  L+ ILS
Sbjct:    93 YFTALASILS 102

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 31/64 (48%), Positives = 43/64 (67%)

Query:    17 PKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRL 76
             PKGHF VYVG    R++VP S+L +P FQ LL +A EE+GF +    + +PCDE  FQ L
Sbjct:    44 PKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMG-LTIPCDELVFQTL 102

Query:    77 SIIL 80
             + ++
Sbjct:   103 TSMI 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/80 (37%), Positives = 52/80 (65%)

Query:     1 MPKNKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNK 60
             + KN+   ++ +    PKGHF VYVG +  R++VP S+L +P F+ LL +A EE+GF++ 
Sbjct:    25 LAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHD 84

Query:    61 QNKIILPCDESTFQRLSIIL 80
                + +PC+E  F+ L+ ++
Sbjct:    85 MG-LTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/70 (50%), Positives = 44/70 (62%)

Query:    17 PKGHFVVYVGTEM--KRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQ 74
             PKGH  VYVG  M  +RFVVP +YL +P FQ+LL KA EE+GF +    + +PC E  F 
Sbjct:    29 PKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGLTIPCTEQIFI 88

Query:    75 RLSIILSKQS 84
              L+  LS  S
Sbjct:    89 DLASRLSTSS 98

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query:    17 PKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRL 76
             PKG+  VYVG E++RF++PTSYL + +F+ LL+KA EE+GF ++   + +PC+  TF+ L
Sbjct:    80 PKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF-DQSGALTIPCEVETFKYL 138

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-31
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	8e-18
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-17
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-14

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  105 bits (264), Expect = 1e-31
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 4  NKIVKDEAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNK 63
          ++    ++  +  PKGHF VYVG E +RFVVP SYL +P+FQ+LLD+A EE+GF      
Sbjct: 23 SRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQD-GG 81

Query: 64 IILPCDESTFQRL 76
          + +PCD   F+ L
Sbjct: 82 LTIPCDVVVFEHL 94

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 70.6 bits (173), Expect = 8e-18
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 17 PKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRL 76
          PKGHF VYVG    R++VP S+L +P FQ LL +A EE+GF +     I PC+E  F+ L
Sbjct: 41 PKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTI-PCEEVVFRSL 99

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 70.5 bits (172), Expect = 1e-17
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 17  PKGHFVVYVGTEM--KRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQ 74
           PKGH  VYVG +M  KRFVVP SYL +P+F++ L++A EE GFH+    + +PC E +F 
Sbjct: 40  PKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF- 98

Query: 75  RLSIILSKQ 83
            L +I S Q
Sbjct: 99  -LHLITSHQ 106

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 62.1 bits (150), Expect = 2e-14
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 17  PKGHFVVYVG----TEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDEST 72
           PKGH  VYVG     E KRFVVP S+L +P F++ L +A EE+GF++    + +PC E  
Sbjct: 36  PKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEV 95

Query: 73  FQRLSIILSK 82
           F  L +I S+
Sbjct: 96  F--LDLIASR 103

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	92.27
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	85.88
PRK02899	197	adaptor protein; Provisional	85.84
PRK02315	233	adaptor protein; Provisional	81.31

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=5e-36  Score=201.40  Aligned_cols=70  Identities=41%  Similarity=0.889  Sum_probs=67.2

Q ss_pred             ccccCCCCCCeEEEEEcCCCeEEEEeccCCCcHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHH
Q 044863           10 EAIRSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIIL   80 (84)
Q Consensus        10 ~~~~~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l   80 (84)
                      +..+.+|||||||||||++++||+||++|||||.|++||++|||||||+|+ |+|+|||+++.|++++|+|
T Consensus        34 ~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         34 DGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             ccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-CcEEEeCCHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999999999999998 9999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=8.5e-36  Score=197.96  Aligned_cols=68  Identities=51%  Similarity=1.006  Sum_probs=65.7

Q ss_pred             cCCCCCCeEEEEEcCCCeEEEEeccCCCcHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHHh
Q 044863           13 RSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILS   81 (84)
Q Consensus        13 ~~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~   81 (84)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++ |+|+|||+++.|++++|+|+
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHhC
Confidence            478999999999999999999999999999999999999999999997 99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=7.8e-35  Score=195.87  Aligned_cols=70  Identities=43%  Similarity=0.834  Sum_probs=64.7

Q ss_pred             ccccCCCCCCeEEEEEcC----CCeEEEEeccCCCcHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHH
Q 044863           10 EAIRSRAPKGHFVVYVGT----EMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSII   79 (84)
Q Consensus        10 ~~~~~~vpkG~~aVyVG~----e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~   79 (84)
                      ...+.+|||||||||||+    +++||+||++|||||.|++||++|||||||+|++|+|+|||+++.|++++..
T Consensus        29 ~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         29 SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            346678999999999997    5899999999999999999999999999999855999999999999999864

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=6.1e-34  Score=192.33  Aligned_cols=70  Identities=46%  Similarity=0.869  Sum_probs=64.7

Q ss_pred             cccCCCCCCeEEEEEcC--CCeEEEEeccCCCcHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHH
Q 044863           11 AIRSRAPKGHFVVYVGT--EMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIIL   80 (84)
Q Consensus        11 ~~~~~vpkG~~aVyVG~--e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l   80 (84)
                      +.+.+|||||||||||+  +++||+||++|||||+|++||++|||||||++++|+|+|||+++.|+++++.-
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            44578999999999997  59999999999999999999999999999998569999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=92.27  E-value=0.19  Score=31.39  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=42.9

Q ss_pred             EEEEcCCCeEEEEeccCCC-c--HHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHHhc
Q 044863           22 VVYVGTEMKRFVVPTSYLK-N--PIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSK   82 (84)
Q Consensus        22 aVyVG~e~~RfvVp~~~L~-h--P~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~   82 (84)
                      ..-||  .++|.++.+-|. +  ..|..+++.......-+. .|.+-|-++...|++||..+++
T Consensus         2 ~lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~-~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    2 RLNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDD-DGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETT-TTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCc-cceEEeccChhhhhHHHHHHhh
Confidence            45688  599999998877 4  478888886522222223 3899999999999999998875

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00666 PB1 PB1 domain

Probab=85.88  E-value=4  Score=24.53  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=40.1

Q ss_pred             EEcCCCeEEEEeccCCCcHHHHHHHHhHHHhhCCc----------CCCCcEEecccHHHHHHHHHHHhc
Q 044863           24 YVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFH----------NKQNKIILPCDESTFQRLSIILSK   82 (84)
Q Consensus        24 yVG~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~~   82 (84)
                      +-|++.+||.+|-    ...|.+|..+..+-|+..          .++..++|.++ +.++.++.+...
T Consensus         7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd-~Dl~~a~~~~~~   70 (81)
T smart00666        7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD-EDLEEAIEEYDS   70 (81)
T ss_pred             EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH-HHHHHHHHHHHH
Confidence            3377899999985    778999999999999874          23236888887 466777766653

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PRK02899 adaptor protein; Provisional

Probab=85.84  E-value=0.73  Score=33.61  Aligned_cols=24  Identities=25%  Similarity=0.634  Sum_probs=20.7

Q ss_pred             HHHHHHHHhHHHhhCCcCCCCcEEe
Q 044863           42 PIFQQLLDKAAEEYGFHNKQNKIIL   66 (84)
Q Consensus        42 P~F~~LL~~aeeEfG~~~~~G~L~I   66 (84)
                      -+|.++|++|..|+||..+ |+|+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            4677779999999999987 99876

>PRK02315 adaptor protein; Provisional

Probab=81.31  E-value=1.3  Score=33.00  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             cHHHHHHHHhHHHhhCCcCCCCcEEe
Q 044863           41 NPIFQQLLDKAAEEYGFHNKQNKIIL   66 (84)
Q Consensus        41 hP~F~~LL~~aeeEfG~~~~~G~L~I   66 (84)
                      +-.|.++|++|..|+||..+ |+|+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~-~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADE-GPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccC-CeEEE
Confidence            35799999999999999986 99986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00